Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58497.t1 | XP_024625385.1 | 98.3 | 59 | 1 | 0 | 1 | 59 | 1 | 59 | 9.10E-23 | 116.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58497.t1 | Q8LCW9 | 62.1 | 58 | 22 | 0 | 2 | 59 | 3 | 60 | 1.0e-14 | 80.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58497.t1 | G7L532 | 98.3 | 59 | 1 | 0 | 1 | 59 | 1 | 59 | 6.5e-23 | 116.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050134 | MS.gene58497 | 0.833835 | 4.24E-56 | -1.69E-46 |
MS.gene050683 | MS.gene58497 | 0.87867 | 2.33E-69 | -1.69E-46 |
MS.gene050684 | MS.gene58497 | 0.911872 | 3.72E-83 | -1.69E-46 |
MS.gene050791 | MS.gene58497 | 0.805935 | 1.05E-49 | -1.69E-46 |
MS.gene052666 | MS.gene58497 | 0.801614 | 8.29E-49 | -1.69E-46 |
MS.gene057641 | MS.gene58497 | 0.815099 | 1.10E-51 | -1.69E-46 |
MS.gene060483 | MS.gene58497 | 0.814354 | 1.61E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58497.t1 | MTR_7g118060 | 93.913 | 115 | 2 | 2 | 1 | 112 | 1 | 113 | 2.05e-67 | 198 |
MS.gene58497.t1 | MTR_8g024350 | 58.559 | 111 | 43 | 1 | 1 | 111 | 1 | 108 | 8.10e-33 | 110 |
MS.gene58497.t1 | MTR_3g092600 | 54.054 | 111 | 50 | 1 | 1 | 111 | 1 | 110 | 3.48e-22 | 84.0 |
MS.gene58497.t1 | MTR_2g066750 | 54.054 | 111 | 50 | 1 | 1 | 111 | 1 | 110 | 3.48e-22 | 84.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58497.t1 | AT5G24510 | 52.542 | 118 | 42 | 4 | 1 | 111 | 1 | 111 | 6.50e-31 | 106 |
MS.gene58497.t1 | AT1G01100 | 54.545 | 110 | 50 | 0 | 2 | 111 | 3 | 112 | 8.19e-28 | 98.6 |
MS.gene58497.t1 | AT1G01100 | 54.545 | 110 | 50 | 0 | 2 | 111 | 3 | 112 | 8.19e-28 | 98.6 |
MS.gene58497.t1 | AT1G01100 | 54.545 | 110 | 50 | 0 | 2 | 111 | 3 | 112 | 8.19e-28 | 98.6 |
MS.gene58497.t1 | AT5G47700 | 54.955 | 111 | 49 | 1 | 2 | 111 | 3 | 113 | 2.06e-26 | 95.1 |
MS.gene58497.t1 | AT5G47700 | 54.955 | 111 | 49 | 1 | 2 | 111 | 3 | 113 | 2.06e-26 | 95.1 |
MS.gene58497.t1 | AT4G00810 | 54.464 | 112 | 48 | 2 | 2 | 111 | 3 | 113 | 2.27e-26 | 94.7 |
MS.gene58497.t1 | AT4G00810 | 54.464 | 112 | 48 | 2 | 2 | 111 | 3 | 113 | 2.27e-26 | 94.7 |
MS.gene58497.t1 | AT1G01100 | 47.273 | 110 | 42 | 1 | 2 | 111 | 3 | 96 | 3.07e-26 | 94.0 |
Find 29 sgRNAs with CRISPR-Local
Find 30 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTCTTCTTCCTCTGGCTC+TGG | 0.293967 | 7.4:-540757 | None:intergenic |
AGCAGCAGCTGGAGCAGCAG+CGG | 0.297502 | 7.4:-540719 | None:intergenic |
AGAAGAGAGTGACGAAGAAA+TGG | 0.327092 | 7.4:+540771 | MS.gene58497:CDS |
ATTCGGCTTGTTCGATGAAT+AGG | 0.347729 | 7.4:+540795 | MS.gene58497:CDS |
AGGTTGATGTTGAATCCTTC+TGG | 0.358591 | 7.4:+540581 | MS.gene58497:CDS |
CCACCACCTGATGCTGCAAC+TGG | 0.368389 | 7.4:-540694 | None:intergenic |
GCTGCTCCAGTTGCAGCATC+AGG | 0.384530 | 7.4:+540688 | MS.gene58497:CDS |
TGCTCCACCTCCAGCAGCAC+TGG | 0.392502 | 7.4:-540656 | None:intergenic |
TCGTCACTCTCTTCTTCCTC+TGG | 0.392693 | 7.4:-540763 | None:intergenic |
GATTTGATTGCCAGTGCTGC+TGG | 0.422177 | 7.4:+540646 | MS.gene58497:CDS |
CAACAAAGTTGTGATGTTGT+CGG | 0.447259 | 7.4:-540548 | None:intergenic |
ATTGCCAGTGCTGCTGGAGG+TGG | 0.452006 | 7.4:+540652 | MS.gene58497:CDS |
GAAGAGAGTGACGAAGAAAT+GGG | 0.472727 | 7.4:+540772 | MS.gene58497:CDS |
GTGATGTTGTCGGCAGTTGC+TGG | 0.481555 | 7.4:-540538 | None:intergenic |
CCAGTTGCAGCATCAGGTGG+TGG | 0.493184 | 7.4:+540694 | MS.gene58497:CDS |
GGATTCAACATCAACCTTTG+CGG | 0.496398 | 7.4:-540575 | None:intergenic |
CTGGAATGTTGTCATCTTCG+AGG | 0.500813 | 7.4:-540519 | None:intergenic |
AGTGACGAAGAAATGGGATT+CGG | 0.508982 | 7.4:+540778 | MS.gene58497:CDS |
GCAAGTTTAGCGAATAAAGC+GGG | 0.558481 | 7.4:-540604 | None:intergenic |
TGTCATCTTCGAGGATGAGA+AGG | 0.559827 | 7.4:-540510 | None:intergenic |
GCTCCAGTTGCAGCATCAGG+TGG | 0.561855 | 7.4:+540691 | MS.gene58497:CDS |
AACTTTGTTGAAATCCGCAA+AGG | 0.566474 | 7.4:+540561 | MS.gene58497:CDS |
AGCGAATAAAGCGGGCCAGA+AGG | 0.567952 | 7.4:-540596 | None:intergenic |
AGCAAGTTTAGCGAATAAAG+CGG | 0.583424 | 7.4:-540605 | None:intergenic |
TGGAGGTGGAGCAGCTGTTG+CGG | 0.612651 | 7.4:+540666 | MS.gene58497:CDS |
GTCATCTTCGAGGATGAGAA+GGG | 0.616441 | 7.4:-540509 | None:intergenic |
TGAGAAGAAACCAGAGCCAG+AGG | 0.638704 | 7.4:+540747 | MS.gene58497:CDS |
TTGATTGCCAGTGCTGCTGG+AGG | 0.642263 | 7.4:+540649 | MS.gene58497:CDS |
TGTAGTGTGAAAATGTCGCT+CGG | 0.684963 | 7.4:+540466 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | TGCTGAGAAGAAAAATATTA+GGG | + | chr7.4:540624-540643 | MS.gene58497:CDS | 25.0% |
! | TTGCTGAGAAGAAAAATATT+AGG | + | chr7.4:540623-540642 | MS.gene58497:CDS | 25.0% |
AACTTTGTTGAAATCCGCAA+AGG | + | chr7.4:540561-540580 | MS.gene58497:CDS | 35.0% | |
AGCAAGTTTAGCGAATAAAG+CGG | - | chr7.4:540608-540627 | None:intergenic | 35.0% | |
CAACAAAGTTGTGATGTTGT+CGG | - | chr7.4:540551-540570 | None:intergenic | 35.0% | |
AGAAGAGAGTGACGAAGAAA+TGG | + | chr7.4:540771-540790 | MS.gene58497:CDS | 40.0% | |
AGTGACGAAGAAATGGGATT+CGG | + | chr7.4:540778-540797 | MS.gene58497:CDS | 40.0% | |
GAAGAGAGTGACGAAGAAAT+GGG | + | chr7.4:540772-540791 | MS.gene58497:CDS | 40.0% | |
GCAAGTTTAGCGAATAAAGC+GGG | - | chr7.4:540607-540626 | None:intergenic | 40.0% | |
GGATTCAACATCAACCTTTG+CGG | - | chr7.4:540578-540597 | None:intergenic | 40.0% | |
!! | AGGTTGATGTTGAATCCTTC+TGG | + | chr7.4:540581-540600 | MS.gene58497:CDS | 40.0% |
CTGGAATGTTGTCATCTTCG+AGG | - | chr7.4:540522-540541 | None:intergenic | 45.0% | |
GTCATCTTCGAGGATGAGAA+GGG | - | chr7.4:540512-540531 | None:intergenic | 45.0% | |
TGTCATCTTCGAGGATGAGA+AGG | - | chr7.4:540513-540532 | None:intergenic | 45.0% | |
GATTTGATTGCCAGTGCTGC+TGG | + | chr7.4:540646-540665 | MS.gene58497:CDS | 50.0% | |
TCGTCACTCTCTTCTTCCTC+TGG | - | chr7.4:540766-540785 | None:intergenic | 50.0% | |
TGAGAAGAAACCAGAGCCAG+AGG | + | chr7.4:540747-540766 | MS.gene58497:CDS | 50.0% | |
AGCGAATAAAGCGGGCCAGA+AGG | - | chr7.4:540599-540618 | None:intergenic | 55.0% | |
GTGATGTTGTCGGCAGTTGC+TGG | - | chr7.4:540541-540560 | None:intergenic | 55.0% | |
! | CTCTCTTCTTCCTCTGGCTC+TGG | - | chr7.4:540760-540779 | None:intergenic | 55.0% |
! | TTGATTGCCAGTGCTGCTGG+AGG | + | chr7.4:540649-540668 | MS.gene58497:CDS | 55.0% |
CCACCACCTGATGCTGCAAC+TGG | - | chr7.4:540697-540716 | None:intergenic | 60.0% | |
CCAGTTGCAGCATCAGGTGG+TGG | + | chr7.4:540694-540713 | MS.gene58497:CDS | 60.0% | |
GCTCCAGTTGCAGCATCAGG+TGG | + | chr7.4:540691-540710 | MS.gene58497:CDS | 60.0% | |
GCTGCTCCAGTTGCAGCATC+AGG | + | chr7.4:540688-540707 | MS.gene58497:CDS | 60.0% | |
TGGAGGTGGAGCAGCTGTTG+CGG | + | chr7.4:540666-540685 | MS.gene58497:CDS | 60.0% | |
TTCTCAGCAGCAGCAGCAGC+TGG | - | chr7.4:540733-540752 | None:intergenic | 60.0% | |
! | ATTGCCAGTGCTGCTGGAGG+TGG | + | chr7.4:540652-540671 | MS.gene58497:CDS | 60.0% |
AGCAGCAGCTGGAGCAGCAG+CGG | - | chr7.4:540722-540741 | None:intergenic | 65.0% | |
TGCTCCACCTCCAGCAGCAC+TGG | - | chr7.4:540659-540678 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 540478 | 540816 | 540478 | ID=MS.gene58497 |
chr7.4 | mRNA | 540478 | 540816 | 540478 | ID=MS.gene58497.t1;Parent=MS.gene58497 |
chr7.4 | exon | 540478 | 540816 | 540478 | ID=MS.gene58497.t1.exon1;Parent=MS.gene58497.t1 |
chr7.4 | CDS | 540478 | 540816 | 540478 | ID=cds.MS.gene58497.t1;Parent=MS.gene58497.t1 |
Gene Sequence |
Protein sequence |