Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58590.t1 | XP_003613413.2 | 86.1 | 1043 | 134 | 2 | 1 | 1043 | 21 | 1052 | 0.00E+00 | 1649.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58590.t1 | Q9LFS8 | 55.0 | 1042 | 459 | 1 | 1 | 1042 | 19 | 1050 | 7.3e-309 | 1061.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58590.t1 | G7K5K8 | 86.1 | 1043 | 134 | 2 | 1 | 1043 | 21 | 1052 | 0.0e+00 | 1649.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064353 | MS.gene58590 | PPI |
| MS.gene035825 | MS.gene58590 | PPI |
| MS.gene73093 | MS.gene58590 | PPI |
| MS.gene043643 | MS.gene58590 | PPI |
| MS.gene035826 | MS.gene58590 | PPI |
| MS.gene064351 | MS.gene58590 | PPI |
| MS.gene035828 | MS.gene58590 | PPI |
| MS.gene99872 | MS.gene58590 | PPI |
| MS.gene043595 | MS.gene58590 | PPI |
| MS.gene043645 | MS.gene58590 | PPI |
| MS.gene043593 | MS.gene58590 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58590.t1 | MTR_5g036370 | 91.083 | 1043 | 82 | 2 | 1 | 1043 | 21 | 1052 | 0.0 | 1939 |
| MS.gene58590.t1 | MTR_4g115050 | 80.345 | 1043 | 195 | 1 | 1 | 1043 | 9 | 1041 | 0.0 | 1680 |
| MS.gene58590.t1 | MTR_3g033470 | 79.770 | 1043 | 201 | 1 | 1 | 1043 | 20 | 1052 | 0.0 | 1666 |
| MS.gene58590.t1 | MTR_5g036330 | 88.048 | 251 | 20 | 1 | 793 | 1043 | 1 | 241 | 9.99e-157 | 463 |
| MS.gene58590.t1 | MTR_5g036300 | 73.387 | 124 | 19 | 2 | 903 | 1023 | 2 | 114 | 2.85e-49 | 170 |
| MS.gene58590.t1 | MTR_4g036760 | 21.558 | 552 | 335 | 19 | 3 | 492 | 23 | 538 | 5.80e-14 | 77.0 |
| MS.gene58590.t1 | MTR_4g061050 | 22.611 | 429 | 261 | 13 | 3 | 373 | 22 | 437 | 8.02e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58590.t1 | AT5G15920 | 58.333 | 1032 | 420 | 1 | 1 | 1032 | 19 | 1040 | 0.0 | 1186 |
| MS.gene58590.t1 | AT5G61460 | 20.826 | 1066 | 721 | 33 | 3 | 995 | 20 | 1035 | 9.25e-20 | 96.3 |
| MS.gene58590.t1 | AT5G07660 | 22.753 | 523 | 323 | 18 | 3 | 473 | 21 | 514 | 4.96e-12 | 70.9 |
| MS.gene58590.t1 | AT3G47460 | 24.045 | 445 | 273 | 18 | 4 | 405 | 2 | 424 | 1.35e-11 | 69.7 |
| MS.gene58590.t1 | AT3G47460 | 24.045 | 445 | 273 | 18 | 4 | 405 | 2 | 424 | 1.43e-11 | 69.3 |
Find 199 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTGGGAATTTCTAGTTTA+TGG | 0.067075 | 5.3:-24796380 | MS.gene58590:CDS |
| AACATCTTCCTTTCATTTAT+TGG | 0.110482 | 5.3:+24789475 | None:intergenic |
| ATGTTTGCAATTCAGTTTAT+TGG | 0.153564 | 5.3:-24796441 | MS.gene58590:intron |
| ATCTCATCAACAACTCTAAA+TGG | 0.179796 | 5.3:+24789597 | None:intergenic |
| TTACTTGCGCTGCAAAATTC+TGG | 0.196368 | 5.3:-24797913 | MS.gene58590:CDS |
| GAATTCAACAAGGAGGTTTA+TGG | 0.219115 | 5.3:-24797841 | MS.gene58590:CDS |
| CCTTAGCTTTAATTGCATTA+TGG | 0.226251 | 5.3:+24795552 | None:intergenic |
| AAACTAGAAATTCCCAAGTT+TGG | 0.243306 | 5.3:+24796384 | None:intergenic |
| GATCAGGATGATTTAGATAC+TGG | 0.252553 | 5.3:-24795623 | MS.gene58590:CDS |
| ACATCTTCCTTTCATTTATT+GGG | 0.259944 | 5.3:+24789476 | None:intergenic |
| ATGTATACCTCAACTAATAC+TGG | 0.262216 | 5.3:+24797817 | None:intergenic |
| AGGAAATATTGTGTCCAAAA+AGG | 0.267057 | 5.3:-24802328 | MS.gene58590:CDS |
| CCGCGTTTGAATCTTGTAAT+TGG | 0.267743 | 5.3:-24802798 | MS.gene58590:CDS |
| GTTAACTCCCGTGCAACTTC+TGG | 0.268408 | 5.3:-24801221 | MS.gene58590:CDS |
| AAGATGAGGAGAAAAGATTA+AGG | 0.270960 | 5.3:-24796063 | MS.gene58590:CDS |
| TACTATTCACTAGAAGTTTC+GGG | 0.314446 | 5.3:+24796280 | None:intergenic |
| GTAATTGGACCCAATGGTTC+TGG | 0.314801 | 5.3:-24802783 | MS.gene58590:CDS |
| TACTTGCGCTGCAAAATTCT+GGG | 0.322152 | 5.3:-24797912 | MS.gene58590:CDS |
| ATACTATTCACTAGAAGTTT+CGG | 0.327797 | 5.3:+24796279 | None:intergenic |
| CTTGAGTCAAATTATTTACT+TGG | 0.327965 | 5.3:+24802274 | None:intergenic |
| AACTAGAAATTCCCAAGTTT+GGG | 0.332368 | 5.3:+24796385 | None:intergenic |
| CTCTTTATGCTCCCCTCTTA+AGG | 0.334118 | 5.3:+24802548 | None:intergenic |
| GATATGGACTATGATCAATT+TGG | 0.340290 | 5.3:-24790807 | MS.gene58590:CDS |
| CTTGTATGTGCTATTGCTCT+TGG | 0.346157 | 5.3:-24802750 | MS.gene58590:CDS |
| AAGATACATTAGCTGCAAAA+TGG | 0.348349 | 5.3:-24800381 | MS.gene58590:CDS |
| CTCCTCAGATGAGCATGATA+TGG | 0.361625 | 5.3:-24790823 | MS.gene58590:intron |
| CACCAGAAAATCACTATTAC+TGG | 0.367078 | 5.3:-24796356 | MS.gene58590:CDS |
| TCTTACCAGATGCGTGCTAT+TGG | 0.370437 | 5.3:-24796702 | MS.gene58590:intron |
| CCTGTCTTTACAATTATTCA+AGG | 0.379548 | 5.3:+24798053 | None:intergenic |
| TGCTGAATTGGAAATCATTA+AGG | 0.381376 | 5.3:-24791787 | MS.gene58590:intron |
| TACAAAGTGTCGTGCTGAAT+TGG | 0.382540 | 5.3:-24791799 | MS.gene58590:CDS |
| CACATTAAGATTACCTTAAG+AGG | 0.382832 | 5.3:-24802561 | MS.gene58590:CDS |
| AGTACTCACTGTGGTGTGTT+TGG | 0.383421 | 5.3:+24789424 | None:intergenic |
| TCTAGCTCTATAATGTTTCC+AGG | 0.386752 | 5.3:+24802867 | None:intergenic |
| TTTCAGAAGGCTCTCTTTGT+TGG | 0.391226 | 5.3:+24796801 | None:intergenic |
| TACTTATAAAAGTCAAATTC+AGG | 0.393258 | 5.3:-24790782 | MS.gene58590:intron |
| AAGACTGGTAGATGAAATTT+CGG | 0.393753 | 5.3:-24798151 | MS.gene58590:CDS |
| CTTGTTGAAGCTGCGCGTTA+CGG | 0.393825 | 5.3:-24795213 | MS.gene58590:CDS |
| TTTCAACAGATGGCTGTTGC+CGG | 0.399444 | 5.3:-24790930 | MS.gene58590:CDS |
| TACTGGTCGAAGTCTAGATA+TGG | 0.407251 | 5.3:-24796339 | MS.gene58590:CDS |
| GCCTCACTATATTGCAGATC+TGG | 0.407453 | 5.3:+24788642 | None:intergenic |
| CCGAATGATCAAGTTTAGAT+TGG | 0.407807 | 5.3:+24796616 | None:intergenic |
| CCAATCTAAACTTGATCATT+CGG | 0.408806 | 5.3:-24796616 | MS.gene58590:intron |
| CGACCAGTATAATTTAAAAC+TGG | 0.411645 | 5.3:+24796830 | None:intergenic |
| TGCAGATCTGGTAACAGCTT+TGG | 0.415021 | 5.3:+24788654 | None:intergenic |
| GTCAAGTTGCTTGGTACACT+TGG | 0.416024 | 5.3:-24797678 | MS.gene58590:CDS |
| AAATTTGGTCCAAACGGAAA+TGG | 0.420361 | 5.3:+24796676 | None:intergenic |
| CAATAGTCTGCTTCTCGTAT+TGG | 0.423911 | 5.3:+24800327 | None:intergenic |
| TGTAAATCAGCCTGGGCTAC+TGG | 0.424941 | 5.3:-24788491 | MS.gene58590:intron |
| TTGTAAAATTTGCAGGTTGA+AGG | 0.428383 | 5.3:-24797962 | MS.gene58590:intron |
| GGTAGATGAAATTTCGGACT+TGG | 0.429052 | 5.3:-24798145 | MS.gene58590:CDS |
| AGCCGTAGAGGTCCCAAACT+TGG | 0.429409 | 5.3:-24796397 | MS.gene58590:CDS |
| CTCAGTGCCCATCATCAATC+TGG | 0.429551 | 5.3:-24789765 | MS.gene58590:CDS |
| TCAACCGTGGGAGGTACATA+AGG | 0.432832 | 5.3:+24800063 | None:intergenic |
| TATTTAGCATGAGACTGATC+TGG | 0.433236 | 5.3:+24797709 | None:intergenic |
| ACTGAAATCGATGGAAGATC+AGG | 0.437608 | 5.3:-24795639 | MS.gene58590:CDS |
| GTTAGCGAAGCTTGTTGATC+AGG | 0.437658 | 5.3:-24795600 | MS.gene58590:CDS |
| TGAATTCATGACGATGCGCC+TGG | 0.438945 | 5.3:+24797857 | None:intergenic |
| TCACATATTGCAACAATATG+AGG | 0.445148 | 5.3:-24791949 | MS.gene58590:CDS |
| TGGCTTATGCGGCGAGCCCC+AGG | 0.449171 | 5.3:-24802730 | MS.gene58590:intron |
| TTCTGTAGGTCAGGTGTAAG+AGG | 0.453874 | 5.3:+24793154 | None:intergenic |
| CAGGCAATCATTAGGCGTAT+TGG | 0.455990 | 5.3:-24795777 | MS.gene58590:intron |
| CGGACAAAGTTATGTTGTAC+AGG | 0.456419 | 5.3:-24795193 | MS.gene58590:CDS |
| CAATACGAGAAGCAGACTAT+TGG | 0.457096 | 5.3:-24800326 | MS.gene58590:CDS |
| GTGAAGCGGGGAGAAGAGTC+TGG | 0.460974 | 5.3:-24802585 | MS.gene58590:CDS |
| TGATGCTTCTGATGCTGTCA+AGG | 0.462891 | 5.3:-24796652 | MS.gene58590:CDS |
| GCCTACTACAATTGAGGAGT+TGG | 0.468182 | 5.3:-24792027 | MS.gene58590:CDS |
| TGAATGTAATGAATGGGCCT+TGG | 0.469077 | 5.3:-24788608 | MS.gene58590:CDS |
| GGAGAGGATGATTATATGCC+TGG | 0.475819 | 5.3:-24802885 | None:intergenic |
| GGAGAAAAGATTAAGGAGTC+AGG | 0.476921 | 5.3:-24796056 | MS.gene58590:CDS |
| AGAAATTCCTTCTGTAGGTC+AGG | 0.478076 | 5.3:+24793145 | None:intergenic |
| AGAACTCTTTCCAGAACCAT+TGG | 0.478943 | 5.3:+24802773 | None:intergenic |
| GATTACCTAAAATGTAAACC+TGG | 0.479900 | 5.3:-24802822 | MS.gene58590:CDS |
| TGTTGCAGAATTTGTGAAGC+GGG | 0.480606 | 5.3:-24802598 | MS.gene58590:CDS |
| TAAAGTGCTCTGATGCTTGA+CGG | 0.484337 | 5.3:+24793337 | None:intergenic |
| CATTCAGTGCTGTCGTACTA+AGG | 0.486679 | 5.3:+24795814 | None:intergenic |
| ATCAGTGCACGATGTTGCTC+AGG | 0.487689 | 5.3:+24801163 | None:intergenic |
| TTTCATTGAATTTGCTGCAA+AGG | 0.487955 | 5.3:-24795163 | MS.gene58590:intron |
| TATTGGTATCCATTTCCGTT+TGG | 0.489737 | 5.3:-24796685 | MS.gene58590:CDS |
| GGAAAGTTCTGCTAATGAAG+TGG | 0.491325 | 5.3:-24798124 | MS.gene58590:CDS |
| TCTCATCAACAACTCTAAAT+GGG | 0.495363 | 5.3:+24789598 | None:intergenic |
| TGCAATTCAGTTTATTGGAT+CGG | 0.495503 | 5.3:-24796436 | MS.gene58590:intron |
| ACAAGATTCAAACGCGGCCC+AGG | 0.496865 | 5.3:+24802804 | None:intergenic |
| ATCTAGAGGGTCAAGTTGCT+TGG | 0.497651 | 5.3:-24797687 | MS.gene58590:CDS |
| AAAGTGCTCTGATGCTTGAC+GGG | 0.499208 | 5.3:+24793338 | None:intergenic |
| GTATGAGAAATTACCCTTCG+AGG | 0.502354 | 5.3:+24788575 | None:intergenic |
| GAGCCTTCTGAAATTTCACC+TGG | 0.502414 | 5.3:-24796791 | MS.gene58590:CDS |
| AAGTTATGTTGTACAGGGAA+TGG | 0.506397 | 5.3:-24795187 | MS.gene58590:CDS |
| GGCAGTTTGTAAGATCTTGA+AGG | 0.506438 | 5.3:+24789619 | None:intergenic |
| CCCATGAGGAAAGTATCAAA+AGG | 0.509551 | 5.3:-24796090 | MS.gene58590:CDS |
| CATACCTAGTGAAATTTCTC+CGG | 0.509754 | 5.3:+24790911 | None:intergenic |
| CTTGCAGCTCCCTTTCCTTG+AGG | 0.511868 | 5.3:+24796125 | None:intergenic |
| CCTTGAATAATTGTAAAGAC+AGG | 0.512386 | 5.3:-24798053 | MS.gene58590:intron |
| AGCCACAAGATTCTGAGAGT+TGG | 0.513654 | 5.3:+24790980 | None:intergenic |
| TCCAACTCCTCAATTGTAGT+AGG | 0.515741 | 5.3:+24792026 | None:intergenic |
| GGTCTCTTCCAGAAGTTGCA+CGG | 0.517180 | 5.3:+24801213 | None:intergenic |
| TTCGAGGGCTGCTCAATCCA+AGG | 0.520046 | 5.3:+24788591 | None:intergenic |
| AGGAACATTAAATCAGTTGA+AGG | 0.520533 | 5.3:-24801000 | MS.gene58590:CDS |
| AAGTTCTTCTGCAGGAAAAG+TGG | 0.520746 | 5.3:-24791006 | MS.gene58590:CDS |
| AGCCTTCTCAGATTCCTTTG+CGG | 0.522678 | 5.3:+24800587 | None:intergenic |
| AATCTTGTAATTGGACCCAA+TGG | 0.527767 | 5.3:-24802789 | MS.gene58590:CDS |
| CAACCGTGGGAGGTACATAA+GGG | 0.528103 | 5.3:+24800064 | None:intergenic |
| GAACTCTTTCCAGAACCATT+GGG | 0.528548 | 5.3:+24802774 | None:intergenic |
| GAATCTGAGCCTCAAGGAAA+GGG | 0.528864 | 5.3:-24796134 | MS.gene58590:CDS |
| GTACCCCTCCAGATTGATGA+TGG | 0.532979 | 5.3:+24789757 | None:intergenic |
| GTCTCTTCCAGAAGTTGCAC+GGG | 0.533502 | 5.3:+24801214 | None:intergenic |
| AAAACTTGACACGGACAAGA+AGG | 0.536122 | 5.3:-24791826 | MS.gene58590:CDS |
| ATTAGCTGCAAAATGGAGAA+AGG | 0.536947 | 5.3:-24800374 | MS.gene58590:CDS |
| TCCCAAGTTTGGGACCTCTA+CGG | 0.537205 | 5.3:+24796395 | None:intergenic |
| CCATAATGCAATTAAAGCTA+AGG | 0.539964 | 5.3:-24795552 | MS.gene58590:intron |
| ATCAGGATGATTTAGATACT+GGG | 0.542003 | 5.3:-24795622 | MS.gene58590:CDS |
| ATTTAGCATGAGACTGATCT+GGG | 0.545071 | 5.3:+24797710 | None:intergenic |
| GGCTGAATATCGTGAAGCTA+AGG | 0.546055 | 5.3:-24800625 | MS.gene58590:CDS |
| GTATCAGCAACAAGTCTGAA+TGG | 0.546894 | 5.3:-24802497 | MS.gene58590:CDS |
| GCCGTAGAGGTCCCAAACTT+GGG | 0.551598 | 5.3:-24796396 | MS.gene58590:CDS |
| TCTGTAGGTCAGGTGTAAGA+GGG | 0.552413 | 5.3:+24793155 | None:intergenic |
| ATTGGAGAAAGAGAGCCAAT+TGG | 0.554157 | 5.3:-24800308 | MS.gene58590:intron |
| TTCCAACTCTCAGAATCTTG+TGG | 0.555471 | 5.3:-24790982 | MS.gene58590:CDS |
| GTAGATGCCTACTACAATTG+AGG | 0.555634 | 5.3:-24792033 | MS.gene58590:intron |
| AGTATTATCACTGGACATGT+TGG | 0.556987 | 5.3:-24788458 | MS.gene58590:CDS |
| CCATCGATCACCAGTAGCCC+AGG | 0.557003 | 5.3:+24788481 | None:intergenic |
| ACATTAAGATTACCTTAAGA+GGG | 0.557216 | 5.3:-24802560 | MS.gene58590:CDS |
| TAATAAAGATTTAAATGTGA+GGG | 0.557358 | 5.3:-24796164 | MS.gene58590:intron |
| TATCAAAAGGTTTCAAGATG+AGG | 0.558989 | 5.3:-24796077 | MS.gene58590:CDS |
| GTATATTGAATGTAATGAAT+GGG | 0.559079 | 5.3:-24788614 | MS.gene58590:CDS |
| CACAAATTCTGCAACACTCG+TGG | 0.559652 | 5.3:+24802605 | None:intergenic |
| TTATAGGAAGTGGAATTACA+AGG | 0.560138 | 5.3:-24800198 | MS.gene58590:intron |
| TTCTCCTTACCAGAAAAGAC+TGG | 0.560319 | 5.3:-24798166 | MS.gene58590:intron |
| AGAATCTGAGCCTCAAGGAA+AGG | 0.561845 | 5.3:-24796135 | MS.gene58590:CDS |
| CCTGGGCTACTGGTGATCGA+TGG | 0.564603 | 5.3:-24788481 | MS.gene58590:CDS |
| AGTATATTGAATGTAATGAA+TGG | 0.565339 | 5.3:-24788615 | MS.gene58590:CDS |
| ACAAGGAAATTACAAAGAGA+TGG | 0.566474 | 5.3:-24800181 | MS.gene58590:CDS |
| GAAAGTGATACTGAAATCGA+TGG | 0.566809 | 5.3:-24795648 | MS.gene58590:CDS |
| GAAAGGTCAGCATACTCGAT+AGG | 0.567610 | 5.3:+24800537 | None:intergenic |
| CCTACAGAAGGAATTTCTTG+AGG | 0.569225 | 5.3:-24793140 | MS.gene58590:intron |
| TTGGATTGAGCAGCCCTCGA+AGG | 0.570162 | 5.3:-24788589 | MS.gene58590:CDS |
| GATCGATGGAGTATTATCAC+TGG | 0.573187 | 5.3:-24788467 | MS.gene58590:CDS |
| GAAAGTTCTGCTAATGAAGT+GGG | 0.573294 | 5.3:-24798123 | MS.gene58590:CDS |
| TCTTTAGATTGGAGATATGG+AGG | 0.574183 | 5.3:-24793388 | MS.gene58590:intron |
| ACTTCTGGAAGAGACCGAAA+AGG | 0.576075 | 5.3:-24801206 | MS.gene58590:CDS |
| CTTAAGAGGGGAGCATAAAG+AGG | 0.576232 | 5.3:-24802547 | MS.gene58590:CDS |
| AGCAGAAACTTAGAAAAGCT+AGG | 0.578280 | 5.3:-24800128 | MS.gene58590:CDS |
| CCTCAAGAAATTCCTTCTGT+AGG | 0.579781 | 5.3:+24793140 | None:intergenic |
| TGCTAATCTTCGTAAACAGA+AGG | 0.579946 | 5.3:-24796032 | MS.gene58590:intron |
| AGTTGCTTGGTACACTTGGA+AGG | 0.581959 | 5.3:-24797674 | MS.gene58590:intron |
| ATTACCTAAAATGTAAACCT+GGG | 0.582947 | 5.3:-24802821 | MS.gene58590:CDS |
| TATGAGAAATTACCCTTCGA+GGG | 0.583430 | 5.3:+24788576 | None:intergenic |
| ATATGAGGATCGTCAAAGAC+AGG | 0.583532 | 5.3:-24791934 | MS.gene58590:intron |
| GCAGTTTGTAAGATCTTGAA+GGG | 0.585493 | 5.3:+24789620 | None:intergenic |
| AAGAGATGGACGAGTTGAGA+AGG | 0.587096 | 5.3:-24800167 | MS.gene58590:CDS |
| GGATGGACCCAATAAATGAA+AGG | 0.587763 | 5.3:-24789483 | MS.gene58590:CDS |
| TGGATTGAGCAGCCCTCGAA+GGG | 0.588060 | 5.3:-24788588 | MS.gene58590:intron |
| AAACTTGACACGGACAAGAA+GGG | 0.590843 | 5.3:-24791825 | MS.gene58590:CDS |
| GTCTCATGCTAAATATCTAG+AGG | 0.591424 | 5.3:-24797701 | MS.gene58590:CDS |
| AAGAGATGAACTTCGTGCCA+AGG | 0.592884 | 5.3:-24800934 | MS.gene58590:intron |
| GCAGAAACTTAGAAAAGCTA+GGG | 0.593127 | 5.3:-24800127 | MS.gene58590:CDS |
| GAAGAGACCGAAAAGGCTGT+TGG | 0.597377 | 5.3:-24801199 | MS.gene58590:CDS |
| ACTTGCGCTGCAAAATTCTG+GGG | 0.600069 | 5.3:-24797911 | MS.gene58590:CDS |
| GCGTGAGAAGACTGCCGCAA+AGG | 0.600363 | 5.3:-24800601 | MS.gene58590:CDS |
| TGTATACCTCAACTAATACT+GGG | 0.601780 | 5.3:+24797818 | None:intergenic |
| CTCTTAAGGTAATCTTAATG+TGG | 0.602368 | 5.3:+24802562 | None:intergenic |
| ACTCCAGGTGAAATTTCAGA+AGG | 0.602563 | 5.3:+24796788 | None:intergenic |
| CTGGCACATCATAATGTCGT+AGG | 0.602967 | 5.3:+24796849 | None:intergenic |
| CATTGAGAATCTGAGCCTCA+AGG | 0.604983 | 5.3:-24796140 | MS.gene58590:CDS |
| GCTATTGCTCTTGGCTTATG+CGG | 0.605682 | 5.3:-24802741 | MS.gene58590:CDS |
| TTCATATCATACTTCAGCCA+TGG | 0.606096 | 5.3:+24800651 | None:intergenic |
| TTATGGCCCAGTATTAGTTG+AGG | 0.607413 | 5.3:-24797824 | MS.gene58590:intron |
| AGTGCCCATCATCAATCTGG+AGG | 0.608837 | 5.3:-24789762 | MS.gene58590:CDS |
| GTAATAAAGATTTAAATGTG+AGG | 0.609425 | 5.3:-24796165 | MS.gene58590:intron |
| GTGCCCATCATCAATCTGGA+GGG | 0.610882 | 5.3:-24789761 | MS.gene58590:CDS |
| TGCCGCAAAGGAATCTGAGA+AGG | 0.611242 | 5.3:-24800589 | MS.gene58590:CDS |
| TCATATTGTTGCAATATGTG+AGG | 0.613373 | 5.3:+24791951 | None:intergenic |
| ACATAATGCTGAATTAGAGA+AGG | 0.617880 | 5.3:-24800976 | MS.gene58590:CDS |
| GTGTTGCAGAATTTGTGAAG+CGG | 0.620426 | 5.3:-24802599 | MS.gene58590:CDS |
| TAATGGAAAAGAAATTGCCA+TGG | 0.622641 | 5.3:-24800668 | MS.gene58590:CDS |
| GCTGAAGTATGATATGAAGC+AGG | 0.623097 | 5.3:-24800646 | MS.gene58590:CDS |
| AACTCACAGACCCTGTCTTG+CGG | 0.625196 | 5.3:+24801250 | None:intergenic |
| TACCCCTCCAGATTGATGAT+GGG | 0.628595 | 5.3:+24789758 | None:intergenic |
| TACACTTACAATCTCAACCG+TGG | 0.631615 | 5.3:+24800050 | None:intergenic |
| TGCCCATCATCAATCTGGAG+GGG | 0.633194 | 5.3:-24789760 | MS.gene58590:intron |
| AAACCCTTATGTACCTCCCA+CGG | 0.634116 | 5.3:-24800067 | MS.gene58590:CDS |
| TGAGAAGGCAAGAACAAACT+CGG | 0.635074 | 5.3:-24800152 | MS.gene58590:CDS |
| ACCAGATCTGCAATATAGTG+AGG | 0.635581 | 5.3:-24788643 | MS.gene58590:CDS |
| AACTGATCAGAAAGCCGTAG+AGG | 0.640166 | 5.3:-24796409 | MS.gene58590:CDS |
| GTTGCAGAATTTGTGAAGCG+GGG | 0.641632 | 5.3:-24802597 | MS.gene58590:CDS |
| TCTTACACCTGACCTACAGA+AGG | 0.643706 | 5.3:-24793152 | MS.gene58590:CDS |
| GGACAAAGTTATGTTGTACA+GGG | 0.644678 | 5.3:-24795192 | MS.gene58590:CDS |
| GTTGCCGGAGAAATTTCACT+AGG | 0.647563 | 5.3:-24790915 | MS.gene58590:intron |
| TGCTTCTGATGCTGTCAAGG+AGG | 0.648261 | 5.3:-24796649 | MS.gene58590:CDS |
| ACACTTACAATCTCAACCGT+GGG | 0.657809 | 5.3:+24800051 | None:intergenic |
| TCTCATGCTAAATATCTAGA+GGG | 0.663581 | 5.3:-24797700 | MS.gene58590:CDS |
| CTGTAGGTCAGGTGTAAGAG+GGG | 0.666378 | 5.3:+24793156 | None:intergenic |
| CTTACAATCTCAACCGTGGG+AGG | 0.666634 | 5.3:+24800054 | None:intergenic |
| CATTAAGATTACCTTAAGAG+GGG | 0.675090 | 5.3:-24802559 | MS.gene58590:CDS |
| GTTGTTGATGAGATCAACCA+AGG | 0.681196 | 5.3:-24789588 | MS.gene58590:intron |
| CCAATTACAAGATTCAAACG+CGG | 0.697229 | 5.3:+24802798 | None:intergenic |
| AGAACAAATTGCTTCCCATG+AGG | 0.706195 | 5.3:-24796104 | MS.gene58590:CDS |
| TCGTCATGAATTCAACAAGG+AGG | 0.707524 | 5.3:-24797848 | MS.gene58590:CDS |
| GCATCGTCATGAATTCAACA+AGG | 0.720677 | 5.3:-24797851 | MS.gene58590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 24788442 | 24802892 | 24788442 | ID=MS.gene58590 |
| chr5.3 | mRNA | 24788442 | 24802892 | 24788442 | ID=MS.gene58590.t1;Parent=MS.gene58590 |
| chr5.3 | exon | 24802731 | 24802892 | 24802731 | ID=MS.gene58590.t1.exon1;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24802731 | 24802892 | 24802731 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24802487 | 24802640 | 24802487 | ID=MS.gene58590.t1.exon2;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24802487 | 24802640 | 24802487 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24802275 | 24802348 | 24802275 | ID=MS.gene58590.t1.exon3;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24802275 | 24802348 | 24802275 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24801129 | 24801278 | 24801129 | ID=MS.gene58590.t1.exon4;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24801129 | 24801278 | 24801129 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24800935 | 24801039 | 24800935 | ID=MS.gene58590.t1.exon5;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24800935 | 24801039 | 24800935 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24800552 | 24800697 | 24800552 | ID=MS.gene58590.t1.exon6;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24800552 | 24800697 | 24800552 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24800309 | 24800420 | 24800309 | ID=MS.gene58590.t1.exon7;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24800309 | 24800420 | 24800309 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24800059 | 24800214 | 24800059 | ID=MS.gene58590.t1.exon8;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24800059 | 24800214 | 24800059 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24798054 | 24798175 | 24798054 | ID=MS.gene58590.t1.exon9;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24798054 | 24798175 | 24798054 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24797825 | 24797969 | 24797825 | ID=MS.gene58590.t1.exon10;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24797825 | 24797969 | 24797825 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24797675 | 24797740 | 24797675 | ID=MS.gene58590.t1.exon11;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24797675 | 24797740 | 24797675 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24796790 | 24796918 | 24796790 | ID=MS.gene58590.t1.exon12;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24796790 | 24796918 | 24796790 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24796617 | 24796715 | 24796617 | ID=MS.gene58590.t1.exon13;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24796617 | 24796715 | 24796617 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24796283 | 24796448 | 24796283 | ID=MS.gene58590.t1.exon14;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24796283 | 24796448 | 24796283 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24796033 | 24796178 | 24796033 | ID=MS.gene58590.t1.exon15;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24796033 | 24796178 | 24796033 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24795778 | 24795841 | 24795778 | ID=MS.gene58590.t1.exon16;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24795778 | 24795841 | 24795778 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24795553 | 24795677 | 24795553 | ID=MS.gene58590.t1.exon17;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24795553 | 24795677 | 24795553 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24795164 | 24795241 | 24795164 | ID=MS.gene58590.t1.exon18;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24795164 | 24795241 | 24795164 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24793331 | 24793403 | 24793331 | ID=MS.gene58590.t1.exon19;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24793331 | 24793403 | 24793331 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24793141 | 24793244 | 24793141 | ID=MS.gene58590.t1.exon20;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24793141 | 24793244 | 24793141 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24791935 | 24792051 | 24791935 | ID=MS.gene58590.t1.exon21;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24791935 | 24792051 | 24791935 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24791788 | 24791865 | 24791788 | ID=MS.gene58590.t1.exon22;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24791788 | 24791865 | 24791788 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24790916 | 24791045 | 24790916 | ID=MS.gene58590.t1.exon23;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24790916 | 24791045 | 24790916 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24790783 | 24790837 | 24790783 | ID=MS.gene58590.t1.exon24;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24790783 | 24790837 | 24790783 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24789761 | 24789809 | 24789761 | ID=MS.gene58590.t1.exon25;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24789761 | 24789809 | 24789761 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24789589 | 24789676 | 24789589 | ID=MS.gene58590.t1.exon26;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24789589 | 24789676 | 24789589 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24789433 | 24789505 | 24789433 | ID=MS.gene58590.t1.exon27;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24789433 | 24789505 | 24789433 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24788589 | 24788692 | 24788589 | ID=MS.gene58590.t1.exon28;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24788589 | 24788692 | 24788589 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| chr5.3 | exon | 24788442 | 24788503 | 24788442 | ID=MS.gene58590.t1.exon29;Parent=MS.gene58590.t1 |
| chr5.3 | CDS | 24788442 | 24788503 | 24788442 | ID=cds.MS.gene58590.t1;Parent=MS.gene58590.t1 |
| Gene Sequence |
| Protein sequence |
