AlfalfaGEDB | MS.gene61050

M. sativa cultivar XinJiangDaYe / MS.gene61050

KEGG: K09716
GO: GO:0002161 GO:0003674 GO:0003824 GO:0016787 GO:0016788 GO:0051499 GO:0052689 GO:0140098 GO:0140101
PFAM: PF04414.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61050.t1	XP_004509954.1	96.5	113	4	0	36	148	249	361	1.40E-58	235.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61050.t1	Q9ZPQ3	69.6	115	31	1	37	147	202	316	3.6e-44	179.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61050.t1	A0A1S2YU38	96.5	113	4	0	36	148	249	361	9.8e-59	235.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene61050	0.817962	2.51E-52	-1.69E-46
MS.gene050026	MS.gene61050	0.800549	1.37E-48	-1.69E-46
MS.gene050355	MS.gene61050	0.805981	1.03E-49	-1.69E-46
MS.gene052519	MS.gene61050	0.816903	4.35E-52	-1.69E-46
MS.gene052867	MS.gene61050	0.809056	2.28E-50	-1.69E-46
MS.gene05415	MS.gene61050	0.814714	1.34E-51	-1.69E-46
MS.gene054236	MS.gene61050	0.815826	7.57E-52	-1.69E-46
MS.gene055586	MS.gene61050	0.813371	2.65E-51	-1.69E-46
MS.gene055818	MS.gene61050	0.819201	1.32E-52	-1.69E-46
MS.gene057026	MS.gene61050	0.818049	2.40E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61050.t1	MTR_8g066120	95.575	113	5	0	36	148	201	313	2.20e-75	227

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61050.t1	AT2G03800	69.565	115	31	1	37	147	202	316	1.30e-54	174
MS.gene61050.t1	AT2G03800	69.565	115	31	1	37	147	246	360	2.45e-54	175

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Find 36 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCCTTCTTGGGATAGG+CGG	0.642444	8.1:+38355407	MS.gene61050:CDS
AACACTACATCCATATGCCG+AGG	0.663300	8.1:-38355443	None:intergenic
AACACTCAATAAAAGTAATT+TGG	0.197331	8.1:-38356310	None:intergenic
AAGAAAGTCCTTCTTGGGAT+AGG	0.543921	8.1:+38355404	MS.gene61050:CDS
AATATAGGAAAGATGATGTT+TGG	0.316445	8.1:+38355822	MS.gene61050:intron
AATGAACCAAACCTAAATAT+TGG	0.350210	8.1:-38355293	None:intergenic
AATTTACTGCAGGAGTTTCA+AGG	0.417491	8.1:+38356228	MS.gene61050:intron
ACATTATGTGCCTCGGCATA+TGG	0.407678	8.1:+38355433	MS.gene61050:CDS
ACGGAGCAGAATATTAAAAT+TGG	0.260579	8.1:+38356283	MS.gene61050:CDS
ACTGCAGGAGTTTCAAGGGC+TGG	0.545446	8.1:+38356233	MS.gene61050:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACGGAGCAGAATATTAAAAT+TGG	+	chr8.1:38356283-38356302	MS.gene61050:CDS	30.0%
ATAAGAAGAAAGTCCTTCTT+GGG	+	chr8.1:38355399-38355418	MS.gene61050:CDS	30.0%
ATGCACATTAAACTTACCTT+TGG	-	chr8.1:38356003-38356022	None:intergenic	30.0%
CTGCACACTTAAATAGATTA+TGG	+	chr8.1:38355527-38355546	MS.gene61050:intron	30.0%
TGCAAACAATTGATTACAGA+AGG	-	chr8.1:38356029-38356048	None:intergenic	30.0%
AATTTACTGCAGGAGTTTCA+AGG	+	chr8.1:38356228-38356247	MS.gene61050:intron	35.0%
ATTTACTGCAGGAGTTTCAA+GGG	+	chr8.1:38356229-38356248	MS.gene61050:intron	35.0%
CACCTTTATCTTCATTCCAA+TGG	-	chr8.1:38355591-38355610	None:intergenic	35.0%
CATTGGAATGAAGATAAAGG+TGG	+	chr8.1:38355589-38355608	MS.gene61050:intron	35.0%
CTCCATTGGAATGAAGATAA+AGG	+	chr8.1:38355586-38355605	MS.gene61050:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	38355197	38356327	38355197	ID=MS.gene61050
chr8.1	mRNA	38355197	38356327	38355197	ID=MS.gene61050.t1;Parent=MS.gene61050
chr8.1	exon	38355197	38355303	38355197	ID=MS.gene61050.t1.exon1;Parent=MS.gene61050.t1
chr8.1	CDS	38355197	38355303	38355197	ID=cds.MS.gene61050.t1;Parent=MS.gene61050.t1
chr8.1	exon	38355391	38355465	38355391	ID=MS.gene61050.t1.exon2;Parent=MS.gene61050.t1
chr8.1	CDS	38355391	38355465	38355391	ID=cds.MS.gene61050.t1;Parent=MS.gene61050.t1
chr8.1	exon	38355829	38356005	38355829	ID=MS.gene61050.t1.exon3;Parent=MS.gene61050.t1
chr8.1	CDS	38355829	38356005	38355829	ID=cds.MS.gene61050.t1;Parent=MS.gene61050.t1
chr8.1	exon	38356240	38356327	38356240	ID=MS.gene61050.t1.exon4;Parent=MS.gene61050.t1
chr8.1	CDS	38356240	38356327	38356240	ID=cds.MS.gene61050.t1;Parent=MS.gene61050.t1

Gene Sequence

>MS.gene61050

ATGTCCCTTTTGAGCATTGAGGCCTTCTCATTTTTCATTATAGAAATAGCTTATACATGCTATAAGCGCCAAGTTAAATTTTTTATCAATGCAGAGCCAATATTTAGGTTTGGTTCATTTATGTGATTAAAGTTTCCTTCTAAAATCGGTGAAAATTTTCTAAAGTGAATCTGATTCTCACACTCTTCCTGCAGGGAGAATGATAAGAAGAAAGTCCTTCTTGGGATAGGCGGTGGACATTATGTGCCTCGGCATATGGATGTAGTGTTGTAAGTAGCCATTTCAGTGACTTTATAATTGAATTTTCTGATTGATGAAAGGGTATATAAACTGCACACTTAAATAGATTATGGGAATAAATTACATTGGTGAAAAACATGGGAGTTAAACTCCATTGGAATGAAGATAAAGGTGGCTTTTTCTTAGTTAGACTACTTTCGCATGATTTCATATGCAATGTATCTTGATTTTGTGTGAACAATCTTCTACTTAAGCCTTTTTTTTACTCGAGTTCTAATACACTTTGAGAAAATGTTGCTTACATAAAATTTTGCGATTGTCAAAATTATTTTTAAACCTTGTTACCTTGAATAAAAAAAATTAACTTACTTGCTTTGCTTTTTGCAATATAGGAAAGATGATGTTTGGGTTGGTCACCTACTTTCTGGATATTCGGTGCCAATGGAAGATCCAAAAGGAGAAACAAATGTAGAGATTGGAGGAACTTGGAAACAGTCTATAAAAGCTGCATATGAGGCAACTAAATCTGCTTTTCCTGGTGGCGAAATTATTGCGCATCTTGACCAAAGGTAAGTTTAATGTGCATTATCCTTCTGTAATCAATTGTTTGCATGCGTGCAAACAACTGAATGATATTTGTTTGTTGAGTGATAAACAGTTCATAAAAAATCATCTGCAACTGCAAGACATGAAAGTTTGATATATATATTTTTTTGGGTCTGAAATACGATTTGAAACTGATAATAGGCTGTAATGCTTTTACTTTACGCTCAAGTTAATGTTTACTCTAAAATTTACTGCAGGAGTTTCAAGGGCTGGCAGAAGAATGCCATCACAGGATTCCTCACGGAGCAGAATATTAAAATTGGAAAGCCAAATTACTTTTATTGA

Protein sequence

>MS.gene61050.t1

MSLLSIEAFSFFIIEIAYTCYKRQVKFFINAEPIFRENDKKKVLLGIGGGHYVPRHMDVVLKDDVWVGHLLSGYSVPMEDPKGETNVEIGGTWKQSIKAAYEATKSAFPGGEIIAHLDQRSFKGWQKNAITGFLTEQNIKIGKPNYFY