AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055586


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055586.t1 MTR_3g110260 94.954 218 8 1 1 215 1 218 5.03e-155 430
MS.gene055586.t1 MTR_8g061040 36.923 260 125 6 1 227 1 254 3.12e-53 176
MS.gene055586.t1 MTR_8g014075 35.498 231 124 4 8 215 7 235 8.52e-38 133
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055586.t1 AT1G15215 41.423 239 106 5 12 218 11 247 9.98e-54 174
MS.gene055586.t1 AT1G15215 41.102 236 105 5 12 215 11 244 7.77e-53 172
MS.gene055586.t1 AT1G15215 41.102 236 105 5 12 215 11 244 1.21e-52 171
MS.gene055586.t1 AT3G18380 36.101 277 119 6 1 227 1 269 1.26e-49 166
MS.gene055586.t1 AT3G18380 36.101 277 118 6 1 227 1 268 2.57e-49 165
MS.gene055586.t1 AT3G18380 36.531 271 123 8 1 227 1 266 1.03e-48 164
MS.gene055586.t1 AT1G15215 36.054 147 63 4 12 129 11 155 3.75e-18 79.3

Find 47 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTTCAGATTGAGAAAA+TGG 0.159542 3.2:-24646388 MS.gene055586:intron
GAACATAGTCTCCAACTTTC+AGG 0.226239 3.2:+24644404 None:intergenic
GAAAACAGACTTGAAACTTT+TGG 0.264857 3.2:+24646302 None:intergenic
CGAAAGGAACTGAGCGTTCC+CGG 0.320535 3.2:+24644446 None:intergenic
CAGAGTCAGATTTGTTGGTT+TGG 0.361976 3.2:-24644508 MS.gene055586:CDS
AGCTTATCATCTGGTCGTGC+TGG 0.372792 3.2:-24646207 MS.gene055586:CDS
AGACTATGTTCTGTGCTTCC+AGG 0.376950 3.2:-24644392 MS.gene055586:intron
AAAAGTACCTCAAAATGAAT+TGG 0.377374 3.2:-24646003 MS.gene055586:CDS
GGATATCATGCATTCTCCTT+TGG 0.380382 3.2:+24644240 None:intergenic
GAAGTCAGAGTCAGATTTGT+TGG 0.406019 3.2:-24644513 MS.gene055586:intron
AAATGTGACACCTGCAACCT+CGG 0.422569 3.2:+24644219 None:intergenic
TATTTCTTTGACGTTCCAGC+TGG 0.431113 3.2:-24644022 MS.gene055586:CDS
CTGGGAAACCTGTCATCAAA+TGG 0.437508 3.2:-24646188 MS.gene055586:CDS
GTCATGTATATCTAAGATCT+TGG 0.438432 3.2:+24644047 None:intergenic
GTAGGAAGGTACCTCAGAAT+TGG 0.440658 3.2:+24646474 None:intergenic
ACCTGAGTCCATTTGATGAC+AGG 0.456466 3.2:+24646180 None:intergenic
TTCCAACTCTGATGAGTCTC+GGG 0.471097 3.2:+24645521 None:intergenic
TTGTCTTGTAGCTTATCATC+TGG 0.483456 3.2:-24646216 MS.gene055586:intron
CTCTGACCTTCCTTGCATTG+AGG 0.498752 3.2:+24645975 None:intergenic
GCACACAGATTTCTTAGCAC+AGG 0.502053 3.2:-24644631 MS.gene055586:CDS
CACACAGATTTCTTAGCACA+GGG 0.505636 3.2:-24644630 MS.gene055586:CDS
GATTTGTTGGTTTGGAGCTG+AGG 0.509918 3.2:-24644500 MS.gene055586:CDS
TTGCTAAGGGAATCATCAAA+AGG 0.520977 3.2:-24646360 MS.gene055586:CDS
ATTCCAACTCTGATGAGTCT+CGG 0.521550 3.2:+24645520 None:intergenic
CTCAGTTCCTTTCGAGAACA+CGG 0.527058 3.2:-24644437 MS.gene055586:CDS
TGCATGATATCCGAGGTTGC+AGG 0.537901 3.2:-24644229 MS.gene055586:CDS
GCATATGTGCTCACCATGCT+TGG 0.545702 3.2:+24645475 None:intergenic
CACCCGAGACTCATCAGAGT+TGG 0.547609 3.2:-24645523 MS.gene055586:CDS
GCTTATCATCTGGTCGTGCT+GGG 0.552961 3.2:-24646206 MS.gene055586:CDS
TTCTGGATTCACCAATTCTG+AGG 0.559706 3.2:-24646485 MS.gene055586:intron
GAGTGTTCCAACCTGAAAGT+TGG 0.564740 3.2:-24644415 MS.gene055586:CDS
ATAGTCTCCAACTTTCAGGT+TGG 0.570305 3.2:+24644408 None:intergenic
ATTGGTTTCTCCTCAATGCA+AGG 0.583252 3.2:-24645985 MS.gene055586:CDS
TCTAGGAAAGAGTTCGCTTG+AGG 0.588698 3.2:-24644085 MS.gene055586:intron
GAACACTCCGTGTTCTCGAA+AGG 0.592495 3.2:+24644430 None:intergenic
ACCTGTCATCAAATGGACTC+AGG 0.592515 3.2:-24646181 MS.gene055586:intron
TGGAAAGCTACTTACCCAGC+TGG 0.592982 3.2:+24644007 None:intergenic
CTCACATTGTAGAGATCCAA+AGG 0.594628 3.2:-24644256 MS.gene055586:CDS
ATTTCTTTGACGTTCCAGCT+GGG 0.595424 3.2:-24644021 None:intergenic
TGGAGCTGAGGAAGATGAGT+GGG 0.595934 3.2:-24644488 MS.gene055586:CDS
GATCTTCGAAAGACCAAGCA+TGG 0.600049 3.2:-24645488 MS.gene055586:intron
GTTTCTCCTCAATGCAAGGA+AGG 0.620933 3.2:-24645981 MS.gene055586:intron
ATATCTAAGATCTTGGTCTG+TGG 0.670538 3.2:+24644054 None:intergenic
AGGAGAATGCATGATATCCG+AGG 0.689625 3.2:-24644236 MS.gene055586:CDS
TTGGAGCTGAGGAAGATGAG+TGG 0.717943 3.2:-24644489 MS.gene055586:CDS
ACACAGATTTCTTAGCACAG+GGG 0.750555 3.2:-24644629 MS.gene055586:CDS
ATATGATCACGACAACAACG+AGG 0.764532 3.2:-24644189 MS.gene055586:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAATTTAATGATTTAGT+TGG + chr3.2:24645760-24645779 None:intergenic 15.0%
!! ATATAATTGTAAAAACTTAC+AGG + chr3.2:24645941-24645960 None:intergenic 15.0%
!! ATATATACAACTTAAATGAA+TGG + chr3.2:24645624-24645643 None:intergenic 15.0%
!! CTAACTAAATAAAAAAGTAA+AGG + chr3.2:24644906-24644925 None:intergenic 15.0%
!! TAAAAAATAACAATTTAGTG+TGG + chr3.2:24645219-24645238 None:intergenic 15.0%
!! TAAAATTCCCATAAAAATAA+AGG + chr3.2:24644480-24644499 None:intergenic 15.0%
!! TTATGGTTTATAGTTAAAAT+TGG + chr3.2:24645679-24645698 None:intergenic 15.0%
!!! AATTGTTCCTTTATTTTTAT+GGG - chr3.2:24644470-24644489 MS.gene055586:CDS 15.0%
!!! TAATTGTTCCTTTATTTTTA+TGG - chr3.2:24644469-24644488 MS.gene055586:CDS 15.0%
!!! TTTTCTTTTTGTTATATTCT+AGG - chr3.2:24646440-24646459 MS.gene055586:intron 15.0%
!! AAATGTTTAATGCATAATTG+AGG + chr3.2:24645352-24645371 None:intergenic 20.0%
!! ATTATAAATCACACATGAAA+TGG + chr3.2:24646411-24646430 None:intergenic 20.0%
!! CTGAAATGAAATAAGATTAA+AGG + chr3.2:24644144-24644163 None:intergenic 20.0%
!! TGAAATAAGATTAAAGGTAA+CGG + chr3.2:24644138-24644157 None:intergenic 20.0%
!!! AACTTTTTCACATCTATAAT+AGG - chr3.2:24645404-24645423 MS.gene055586:intron 20.0%
!!! ATTTTTTAGCATGTATGATA+CGG + chr3.2:24645497-24645516 None:intergenic 20.0%
!!! TAAATTTTAATGTCACTGAA+AGG - chr3.2:24645145-24645164 MS.gene055586:intron 20.0%
!!! TAATTAAAAGTGCATTTCAA+AGG + chr3.2:24644451-24644470 None:intergenic 20.0%
! AACAAAGAAACAATGATTGA+GGG + chr3.2:24644267-24644286 None:intergenic 25.0%
! AAGATTCTTTGACTAAAATC+TGG - chr3.2:24645589-24645608 MS.gene055586:intron 25.0%
! AGAAAATGGAAAAATTGCTA+AGG - chr3.2:24644168-24644187 MS.gene055586:intron 25.0%
! AGAGAGTAAAAGAAAAAAGT+AGG + chr3.2:24644089-24644108 None:intergenic 25.0%
! AGTAAAAGAAAAAAGTAGGA+AGG + chr3.2:24644085-24644104 None:intergenic 25.0%
! ATACATGCTAAAAAATTGTG+AGG - chr3.2:24645501-24645520 MS.gene055586:CDS 25.0%
! ATGAAGCTATAAACAATCTA+TGG + chr3.2:24645271-24645290 None:intergenic 25.0%
! ATGTAATTTACTTCAGAATG+CGG - chr3.2:24644723-24644742 MS.gene055586:intron 25.0%
! CCATAAAACAGATAGTATAT+AGG - chr3.2:24645693-24645712 MS.gene055586:intron 25.0%
! GAAAATGGAAAAATTGCTAA+GGG - chr3.2:24644169-24644188 MS.gene055586:intron 25.0%
! GTAGTATTCAGTTAATTATC+TGG - chr3.2:24645440-24645459 MS.gene055586:intron 25.0%
! GTTGTATATATGTATATGTG+TGG - chr3.2:24645633-24645652 MS.gene055586:intron 25.0%
! TCAACATAAAAAATTCAGTC+CGG - chr3.2:24646077-24646096 MS.gene055586:intron 25.0%
! TTCATTTCAGATTGAGAAAA+TGG - chr3.2:24644154-24644173 MS.gene055586:intron 25.0%
!! CCTATATACTATCTGTTTTA+TGG + chr3.2:24645696-24645715 None:intergenic 25.0%
!! CTTTTATAACTATACATGGA+TGG - chr3.2:24645564-24645583 MS.gene055586:intron 25.0%
!! TCGTCTTTTATAACTATACA+TGG - chr3.2:24645560-24645579 MS.gene055586:intron 25.0%
!!! AAAAGTACCTCAAAATGAAT+TGG - chr3.2:24644539-24644558 MS.gene055586:intron 25.0%
!!! AATTCATTTTGAGGTACTTT+TGG + chr3.2:24644540-24644559 None:intergenic 25.0%
!!! ATGTTAAACTGCATTGATTA+TGG - chr3.2:24644773-24644792 MS.gene055586:intron 25.0%
!!! GTAAGAGTTTTGAAAATCAT+TGG + chr3.2:24645735-24645754 None:intergenic 25.0%
!!! TAGTTTTTGGTAAAAATCGA+GGG + chr3.2:24644219-24644238 None:intergenic 25.0%
!!! TTTTTTAGCATGTATGATAC+GGG + chr3.2:24645496-24645515 None:intergenic 25.0%
AAAATCTAGTACACCCTATA+AGG + chr3.2:24645978-24645997 None:intergenic 30.0%
AAATCTAGTACACCCTATAA+GGG + chr3.2:24645977-24645996 None:intergenic 30.0%
AACTATCCTAACAACGTTTA+AGG + chr3.2:24644604-24644623 None:intergenic 30.0%
AAGTAAAGGAAAACAGAAAG+TGG + chr3.2:24644892-24644911 None:intergenic 30.0%
AATCATTGGAGGAAGAAAAT+TGG + chr3.2:24645721-24645740 None:intergenic 30.0%
ACATTACCTTAAACGTTGTT+AGG - chr3.2:24644595-24644614 MS.gene055586:intron 30.0%
AGTAAAGGAAAACAGAAAGT+GGG + chr3.2:24644891-24644910 None:intergenic 30.0%
ATATATGCAGAATTCACGAA+TGG + chr3.2:24645117-24645136 None:intergenic 30.0%
CAACAAAGAAACAATGATTG+AGG + chr3.2:24644268-24644287 None:intergenic 30.0%
CAACATAAAAAATTCAGTCC+GGG - chr3.2:24646078-24646097 MS.gene055586:intron 30.0%
TACAATTTGTCCAAGTCTAA+AGG - chr3.2:24645856-24645875 MS.gene055586:intron 30.0%
TCCTGTGTATTTCAATGTTT+GGG - chr3.2:24644658-24644677 MS.gene055586:intron 30.0%
TTAAACGTTGTTAGGATAGT+TGG - chr3.2:24644603-24644622 MS.gene055586:intron 30.0%
TTGGTGAATCCAGAAAAAAT+AGG + chr3.2:24644052-24644071 None:intergenic 30.0%
! AACAACGTTTAAGGTAATGT+AGG + chr3.2:24644595-24644614 None:intergenic 30.0%
! AACAGTTTCTCCTTTTGTAA+AGG - chr3.2:24646007-24646026 MS.gene055586:CDS 30.0%
! ATCATTGTTTCTTTGTTGGT+CGG - chr3.2:24644270-24644289 MS.gene055586:CDS 30.0%
! CTCAATCATTGTTTCTTTGT+TGG - chr3.2:24644266-24644285 MS.gene055586:CDS 30.0%
! GAAAACAGACTTGAAACTTT+TGG + chr3.2:24644243-24644262 None:intergenic 30.0%
! GACAGTTTCAATGTGTTTTT+AGG - chr3.2:24646233-24646252 MS.gene055586:intron 30.0%
! GGGAATTTTAGATACATAGT+TGG - chr3.2:24644490-24644509 MS.gene055586:CDS 30.0%
! GTCATGTATATCTAAGATCT+TGG + chr3.2:24646498-24646517 None:intergenic 30.0%
!!! AGAGTTTTGAAAATCATTGG+AGG + chr3.2:24645732-24645751 None:intergenic 30.0%
!!! CTAGTTTTTGGTAAAAATCG+AGG + chr3.2:24644220-24644239 None:intergenic 30.0%
!!! CTTCAATGCCATTTTTACTT+TGG - chr3.2:24645241-24645260 MS.gene055586:intron 30.0%
!!! GTTTTAAGAAAATGACACCA+AGG - chr3.2:24644812-24644831 MS.gene055586:intron 30.0%
!!! TGAAACTTTTGGCTAGTTTT+TGG + chr3.2:24644232-24644251 None:intergenic 30.0%
!!! TTTCAATGTGTTTTTAGGAG+AGG - chr3.2:24646238-24646257 MS.gene055586:intron 30.0%
AAACTTTGACCTAAATCACC+TGG + chr3.2:24646171-24646190 None:intergenic 35.0%
AAAGGAGAAACTGTTTAAGC+TGG + chr3.2:24646002-24646021 None:intergenic 35.0%
AATCTAGTACACCCTATAAG+GGG + chr3.2:24645976-24645995 None:intergenic 35.0%
ACATTGAAATACACAGGACA+AGG + chr3.2:24644656-24644675 None:intergenic 35.0%
ACTCTGACTTCCTTTACAAA+AGG + chr3.2:24646020-24646039 None:intergenic 35.0%
ATGGACCACCAAAGTAAAAA+TGG + chr3.2:24645252-24645271 None:intergenic 35.0%
ATTTCAATGTTTGGGCCTTT+AGG - chr3.2:24644666-24644685 MS.gene055586:intron 35.0%
CAGTTAATTATCTGGTGTTC+TGG - chr3.2:24645448-24645467 MS.gene055586:intron 35.0%
CTCAAATATTTGCGAACACA+AGG + chr3.2:24644935-24644954 None:intergenic 35.0%
GAAAAAATAGGTCTGTTACG+AGG + chr3.2:24644040-24644059 None:intergenic 35.0%
GATGTCCTTTAACTGTTCTA+TGG + chr3.2:24646199-24646218 None:intergenic 35.0%
GTCCTGTGTATTTCAATGTT+TGG - chr3.2:24644657-24644676 MS.gene055586:intron 35.0%
TTCATAGCTTTCCCCTTATA+GGG - chr3.2:24645962-24645981 MS.gene055586:intron 35.0%
TTGCTAAGGGAATCATCAAA+AGG - chr3.2:24644182-24644201 MS.gene055586:intron 35.0%
TTGTCTTGTAGCTTATCATC+TGG - chr3.2:24644326-24644345 MS.gene055586:intron 35.0%
TTTCAATGTTTGGGCCTTTA+GGG - chr3.2:24644667-24644686 MS.gene055586:intron 35.0%
! ATATCTAAGATCTTGGTCTG+TGG + chr3.2:24646491-24646510 None:intergenic 35.0%
! ATTTTCGACAATGACATCAG+TGG - chr3.2:24645821-24645840 MS.gene055586:intron 35.0%
! GGAGAAACCAATTCATTTTG+AGG + chr3.2:24644549-24644568 None:intergenic 35.0%
! TGTGGATTAATATCAGCATG+TGG + chr3.2:24645201-24645220 None:intergenic 35.0%
!!! CAATGCCATTTTTACTTTGG+TGG - chr3.2:24645244-24645263 MS.gene055586:intron 35.0%
!!! CGTAACAGACCTATTTTTTC+TGG - chr3.2:24644040-24644059 MS.gene055586:CDS 35.0%
!!! GTCTGAAATGAGTTTTTTGC+AGG - chr3.2:24644990-24645009 MS.gene055586:intron 35.0%
!!! TGGGTGTTATTTCTGCATTT+TGG - chr3.2:24646376-24646395 MS.gene055586:CDS 35.0%
ACACAGATTTCTTAGCACAG+GGG - chr3.2:24645913-24645932 MS.gene055586:intron 40.0%
AGAAAATGACACCAAGGACA+AGG - chr3.2:24644818-24644837 MS.gene055586:intron 40.0%
AGCAATGAGGGACTATCAAA+AGG - chr3.2:24644853-24644872 MS.gene055586:intron 40.0%
ATATGATCACGACAACAACG+AGG - chr3.2:24646353-24646372 MS.gene055586:CDS 40.0%
ATTCCAACTCTGATGAGTCT+CGG + chr3.2:24645025-24645044 None:intergenic 40.0%
CACACAGATTTCTTAGCACA+GGG - chr3.2:24645912-24645931 MS.gene055586:intron 40.0%
CCTCACCATAGAACAGTTAA+AGG - chr3.2:24646191-24646210 MS.gene055586:CDS 40.0%
CCTTTAACTGTTCTATGGTG+AGG + chr3.2:24646194-24646213 None:intergenic 40.0%
CTCACATTGTAGAGATCCAA+AGG - chr3.2:24646286-24646305 MS.gene055586:intron 40.0%
GAACATAGTCTCCAACTTTC+AGG + chr3.2:24646141-24646160 None:intergenic 40.0%
GAAGTCAGAGTCAGATTTGT+TGG - chr3.2:24646029-24646048 MS.gene055586:CDS 40.0%
GCCCAAACATTGAAATACAC+AGG + chr3.2:24644662-24644681 None:intergenic 40.0%
GGATATCATGCATTCTCCTT+TGG + chr3.2:24646305-24646324 None:intergenic 40.0%
GTTCATAGCTTTCCCCTTAT+AGG - chr3.2:24645961-24645980 MS.gene055586:intron 40.0%
TATTTCTTTGACGTTCCAGC+TGG - chr3.2:24646520-24646539 MS.gene055586:CDS 40.0%
TTAAACCAGCACTTCTAGTG+AGG - chr3.2:24644963-24644982 MS.gene055586:intron 40.0%
TTCTGGATTCACCAATTCTG+AGG - chr3.2:24644057-24644076 MS.gene055586:CDS 40.0%
! ATAGTCTCCAACTTTCAGGT+TGG + chr3.2:24646137-24646156 None:intergenic 40.0%
! ATTGGTTTCTCCTCAATGCA+AGG - chr3.2:24644557-24644576 MS.gene055586:intron 40.0%
! CATATCTGAAGTGACCCTAA+AGG + chr3.2:24644684-24644703 None:intergenic 40.0%
! TGTGGTGTGTTTCAAGTGAA+AGG - chr3.2:24645651-24645670 MS.gene055586:intron 40.0%
!! CAGAGTCAGATTTGTTGGTT+TGG - chr3.2:24646034-24646053 MS.gene055586:CDS 40.0%
AAATGTGACACCTGCAACCT+CGG + chr3.2:24646326-24646345 None:intergenic 45.0%
AAGTGACTGGGAAGCAATGA+GGG - chr3.2:24644841-24644860 MS.gene055586:intron 45.0%
AGACTATGTTCTGTGCTTCC+AGG - chr3.2:24646150-24646169 MS.gene055586:intron 45.0%
AGGAGAATGCATGATATCCG+AGG - chr3.2:24646306-24646325 MS.gene055586:intron 45.0%
CACTGATCTCACTGTATTCC+TGG - chr3.2:24645291-24645310 MS.gene055586:intron 45.0%
CTCAGTTCCTTTCGAGAACA+CGG - chr3.2:24646105-24646124 MS.gene055586:intron 45.0%
CTGCAGCAAACCTTTAGACT+TGG + chr3.2:24645869-24645888 None:intergenic 45.0%
CTGGGAAACCTGTCATCAAA+TGG - chr3.2:24644354-24644373 MS.gene055586:intron 45.0%
GAGTGTTCCAACCTGAAAGT+TGG - chr3.2:24646127-24646146 MS.gene055586:intron 45.0%
GATCTTCGAAAGACCAAGCA+TGG - chr3.2:24645054-24645073 MS.gene055586:intron 45.0%
GCACACAGATTTCTTAGCAC+AGG - chr3.2:24645911-24645930 MS.gene055586:intron 45.0%
GTTTCTCCTCAATGCAAGGA+AGG - chr3.2:24644561-24644580 MS.gene055586:intron 45.0%
TCTAGGAAAGAGTTCGCTTG+AGG - chr3.2:24646457-24646476 MS.gene055586:intron 45.0%
TCTGTGCTTCCAGGTGATTT+AGG - chr3.2:24646159-24646178 MS.gene055586:intron 45.0%
TTCCAACTCTGATGAGTCTC+GGG + chr3.2:24645024-24645043 None:intergenic 45.0%
TTGCCTAGTCGTAGACATAC+AGG - chr3.2:24645792-24645811 MS.gene055586:intron 45.0%
! ACCTGAGTCCATTTGATGAC+AGG + chr3.2:24644365-24644384 None:intergenic 45.0%
! ACCTGTCATCAAATGGACTC+AGG - chr3.2:24644361-24644380 MS.gene055586:intron 45.0%
! TGTCAAATCGAAAGCATGCC+AGG + chr3.2:24645312-24645331 None:intergenic 45.0%
!! CAAGTCTAAAGGTTTGCTGC+AGG - chr3.2:24645867-24645886 MS.gene055586:intron 45.0%
!! GAAGTGCTGGTTTAAGCAGT+TGG + chr3.2:24644958-24644977 None:intergenic 45.0%
!! GAGGTACTTTTGGTGAGTCT+TGG + chr3.2:24644530-24644549 None:intergenic 45.0%
!! GATTTGTTGGTTTGGAGCTG+AGG - chr3.2:24646042-24646061 MS.gene055586:CDS 45.0%
!! GTAGGAAGGTACCTCAGAAT+TGG + chr3.2:24644071-24644090 None:intergenic 45.0%
ACCAAGGACAAGGAAGTGAC+TGG - chr3.2:24644828-24644847 MS.gene055586:intron 50.0%
AGCTTATCATCTGGTCGTGC+TGG - chr3.2:24644335-24644354 MS.gene055586:intron 50.0%
CCAAGGACAAGGAAGTGACT+GGG - chr3.2:24644829-24644848 MS.gene055586:intron 50.0%
CTCTGACCTTCCTTGCATTG+AGG + chr3.2:24644570-24644589 None:intergenic 50.0%
GAACACTCCGTGTTCTCGAA+AGG + chr3.2:24646115-24646134 None:intergenic 50.0%
GAAGTGACTGGGAAGCAATG+AGG - chr3.2:24644840-24644859 MS.gene055586:intron 50.0%
GATCACGACAACAACGAGGT+GGG - chr3.2:24646357-24646376 MS.gene055586:CDS 50.0%
GCATATGTGCTCACCATGCT+TGG + chr3.2:24645070-24645089 None:intergenic 50.0%
GCTTATCATCTGGTCGTGCT+GGG - chr3.2:24644336-24644355 MS.gene055586:intron 50.0%
GTGCCTGTATGTCTACGACT+AGG + chr3.2:24645798-24645817 None:intergenic 50.0%
TGATCACGACAACAACGAGG+TGG - chr3.2:24646356-24646375 MS.gene055586:CDS 50.0%
TGCATGATATCCGAGGTTGC+AGG - chr3.2:24646313-24646332 MS.gene055586:CDS 50.0%
TGGAGCTGAGGAAGATGAGT+GGG - chr3.2:24646054-24646073 MS.gene055586:intron 50.0%
TTGGAGCTGAGGAAGATGAG+TGG - chr3.2:24646053-24646072 MS.gene055586:intron 50.0%
! CTCAACCTCACTAGAAGTGC+TGG + chr3.2:24644971-24644990 None:intergenic 50.0%
CACCCGAGACTCATCAGAGT+TGG - chr3.2:24645019-24645038 MS.gene055586:intron 55.0%
CCCAGTCACTTCCTTGTCCT+TGG + chr3.2:24644832-24644851 None:intergenic 55.0%
CGAAAGGAACTGAGCGTTCC+CGG + chr3.2:24646099-24646118 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 24644022 24646542 24644022 ID=MS.gene055586
chr3.2 mRNA 24644022 24646542 24644022 ID=MS.gene055586.t1;Parent=MS.gene055586
chr3.2 exon 24646486 24646542 24646486 ID=MS.gene055586.t1.exon1;Parent=MS.gene055586.t1
chr3.2 CDS 24646486 24646542 24646486 ID=cds.MS.gene055586.t1;Parent=MS.gene055586.t1
chr3.2 exon 24646312 24646400 24646312 ID=MS.gene055586.t1.exon2;Parent=MS.gene055586.t1
chr3.2 CDS 24646312 24646400 24646312 ID=cds.MS.gene055586.t1;Parent=MS.gene055586.t1
chr3.2 exon 24646182 24646227 24646182 ID=MS.gene055586.t1.exon3;Parent=MS.gene055586.t1
chr3.2 CDS 24646182 24646227 24646182 ID=cds.MS.gene055586.t1;Parent=MS.gene055586.t1
chr3.2 exon 24645982 24646063 24645982 ID=MS.gene055586.t1.exon4;Parent=MS.gene055586.t1
chr3.2 CDS 24645982 24646063 24645982 ID=cds.MS.gene055586.t1;Parent=MS.gene055586.t1
chr3.2 exon 24645489 24645552 24645489 ID=MS.gene055586.t1.exon5;Parent=MS.gene055586.t1
chr3.2 CDS 24645489 24645552 24645489 ID=cds.MS.gene055586.t1;Parent=MS.gene055586.t1
chr3.2 exon 24644624 24644675 24644624 ID=MS.gene055586.t1.exon6;Parent=MS.gene055586.t1
chr3.2 CDS 24644624 24644675 24644624 ID=cds.MS.gene055586.t1;Parent=MS.gene055586.t1
chr3.2 exon 24644393 24644527 24644393 ID=MS.gene055586.t1.exon7;Parent=MS.gene055586.t1
chr3.2 CDS 24644393 24644527 24644393 ID=cds.MS.gene055586.t1;Parent=MS.gene055586.t1
chr3.2 exon 24644190 24644309 24644190 ID=MS.gene055586.t1.exon8;Parent=MS.gene055586.t1
chr3.2 CDS 24644190 24644309 24644190 ID=cds.MS.gene055586.t1;Parent=MS.gene055586.t1
chr3.2 exon 24644022 24644097 24644022 ID=MS.gene055586.t1.exon9;Parent=MS.gene055586.t1
chr3.2 CDS 24644022 24644097 24644022 ID=cds.MS.gene055586.t1;Parent=MS.gene055586.t1
Gene Sequence

>MS.gene055586

ATGGATCGCTTGCGTCCTCGTAACAGACCTATTTTTTCTGGATTCACCAATTCTGAGGTACCTTCCTACTTTTTTCTTTTACTCTCTAAACTCACTCTTTCTCAATTCAATAACCGTTACCTTTAATCTTATTTCATTTCAGATTGAGAAAATGGAAAAATTGCTAAGGGAATCATCAAAAGGACAATCATTCACCCTCGATTTTTACCAAAAACTAGCCAAAAGTTTCAAGTCTGTTTTCTCCCTCAATCATTGTTTCTTTGTTGGTCGGTTTATTTTCTAACAACAACTAATGAACACACGCTTGTCTTGTAGCTTATCATCTGGTCGTGCTGGGAAACCTGTCATCAAATGGACTCAGGTTATTATTTTTTCTTTACTTGTCTATGTAGCATTTTTTTTTTTATAAAAATATTGTCTTTTTTTCCTTTGAAATGCACTTTTAATTAATTGTTCCTTTATTTTTATGGGAATTTTAGATACATAGTTGGTTTCAGACTAGACTCCAAGACTCACCAAAAGTACCTCAAAATGAATTGGTTTCTCCTCAATGCAAGGAAGGTCAGAGTTCCTACATTACCTTAAACGTTGTTAGGATAGTTGGTGCTGTCTTCAAGCATTCTAATGATCACCTTGTCCTGTGTATTTCAATGTTTGGGCCTTTAGGGTCACTTCAGATATGTTGTATTTTTTTTTATTTGATGTAATTTACTTCAGAATGCGGCTTGTGAAACTTTATAATGTCAATTTGATGTTAAACTGCATTGATTATGGTATTAGAGACATGTTAGTTTTAAGAAAATGACACCAAGGACAAGGAAGTGACTGGGAAGCAATGAGGGACTATCAAAAGGATCATGAACTTTCCCACTTTCTGTTTTCCTTTACTTTTTTATTTAGTTAGATTCTACCTTGTGTTCGCAAATATTTGAGCCAACTGCTTAAACCAGCACTTCTAGTGAGGTTGAGTCTGAAATGAGTTTTTTGCAGGAGAAAACACCCGAGACTCATCAGAGTTGGAATTTGAAGCGAGATCTTCGAAAGACCAAGCATGGTGAGCACATATGCAGTTAGCTTAAATTCTTTAGTAATCCATTCGTGAATTCTGCATATATGAAGTATTTAAATTTTAATGTCACTGAAAGGTTTTAATAAATACTTTTCTGAAACATTAAACCACATGCTGATATTAATCCACACTAAATTGTTATTTTTTAATCTTCAATGCCATTTTTACTTTGGTGGTCCATAGATTGTTTATAGCTTCATCACTGATCTCACTGTATTCCTGGCATGCTTTCGATTTGACAGAAAGATTGCTTGAAATCCTCAATTATGCATTAAACATTTTGTTTTGTATCAAATTGTATAATAAGTAGCTGAACTTTTTCACATCTATAATAGGCTAAAATTGTGTTGTAGTATTCAGTTAATTATCTGGTGTTCTGGAAATGCAGTTTGCATAAGAGTTCCCGTATCATACATGCTAAAAAATTGTGAGGCTCATTGTATCTATCTATATAATCTTTTAACTTTTCTCGTCTTTTATAACTATACATGGATGGTCAAGATTCTTTGACTAAAATCTGGCGTTGATGACCATTCATTTAAGTTGTATATATGTATATGTGTGGTGTGTTTCAAGTGAAAGGAGCCAATTTTAACTATAAACCATAAAACAGATAGTATATAGGAGCCAATTTTCTTCCTCCAATGATTTTCAAAACTCTTACTACCAACTAAATCATTAAATTTTGTGCAATTACACTTTTGCCTAGTCGTAGACATACAGGCACAGTATTTTCGACAATGACATCAGTGGCACTTTTTAAATTACAATTTGTCCAAGTCTAAAGGTTTGCTGCAGGTACGATGTTGAGACATTTCTTGCACACAGATTTCTTAGCACAGGGGAACCTGTAAGTTTTTACAATTATATGTTCATAGCTTTCCCCTTATAGGGTGTACTAGATTTTGCCAGCTTAAACAGTTTCTCCTTTTGTAAAGGAAGTCAGAGTCAGATTTGTTGGTTTGGAGCTGAGGAAGATGAGTGGGTCAACATAAAAAATTCAGTCCGGGAACGCTCAGTTCCTTTCGAGAACACGGAGTGTTCCAACCTGAAAGTTGGAGACTATGTTCTGTGCTTCCAGGTGATTTAGGTCAAAGTTTCCTCACCATAGAACAGTTAAAGGACATCAATGAAATTAACTTGACAGTTTCAATGTGTTTTTAGGAGAGGAGAGATCAAGCAATTTACTATGATGCTCACATTGTAGAGATCCAAAGGAGAATGCATGATATCCGAGGTTGCAGGTGTCACATTTTAATTCGATATGATCACGACAACAACGAGGTGGGTGTTATTTCTGCATTTTGGTTGTGCTAACCATTTCATGTGTGATTTATAATTTTTCTATGTTTTCTTTTTGTTATATTCTAGGAAAGAGTTCGCTTGAGGAGACTTTGCCACAGACCAAGATCTTAGATATACATGACATTATTTCTTTGACGTTCCAGCTGG

Protein sequence

>MS.gene055586.t1

MDRLRPRNRPIFSGFTNSEIEKMEKLLRESSKGQSFTLDFYQKLAKSFNLSSGRAGKPVIKWTQIHSWFQTRLQDSPKVPQNELVSPQCKEGENTRDSSELEFEARSSKDQAWYDVETFLAHRFLSTGEPSQICWFGAEEDEWVNIKNSVRERSVPFENTECSNLKVGDYVLCFQERRDQAIYYDAHIVEIQRRMHDIRGCRCHILIRYDHDNNESSLEETLPQTKILDIHDIISLTFQL