Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61911.t1 | XP_003625428.1 | 94.3 | 528 | 29 | 1 | 1 | 528 | 98 | 624 | 3.50E-226 | 794.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61911.t1 | Q9C950 | 57.8 | 533 | 215 | 6 | 1 | 528 | 116 | 643 | 3.1e-138 | 493.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61911.t1 | G7KYI5 | 94.3 | 528 | 29 | 1 | 1 | 528 | 98 | 624 | 2.5e-226 | 794.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene61911 | 0.805869 | 1.08E-49 | -1.69E-46 |
| MS.gene049801 | MS.gene61911 | 0.813187 | 2.91E-51 | -1.69E-46 |
| MS.gene050084 | MS.gene61911 | 0.802877 | 4.55E-49 | -1.69E-46 |
| MS.gene050085 | MS.gene61911 | 0.815161 | 1.07E-51 | -1.69E-46 |
| MS.gene050361 | MS.gene61911 | 0.832706 | 8.11E-56 | -1.69E-46 |
| MS.gene050654 | MS.gene61911 | 0.817968 | 2.50E-52 | -1.69E-46 |
| MS.gene050941 | MS.gene61911 | 0.806824 | 6.82E-50 | -1.69E-46 |
| MS.gene051102 | MS.gene61911 | 0.80921 | 2.12E-50 | -1.69E-46 |
| MS.gene053216 | MS.gene61911 | 0.801075 | 1.07E-48 | -1.69E-46 |
| MS.gene056480 | MS.gene61911 | 0.823163 | 1.61E-53 | -1.69E-46 |
| MS.gene057392 | MS.gene61911 | 0.802337 | 5.89E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene61911 | 0.809768 | 1.61E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene61911 | 0.80866 | 2.78E-50 | -1.69E-46 |
| MS.gene058054 | MS.gene61911 | 0.819061 | 1.41E-52 | -1.69E-46 |
| MS.gene058399 | MS.gene61911 | 0.803528 | 3.34E-49 | -1.69E-46 |
| MS.gene058595 | MS.gene61911 | 0.810543 | 1.09E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene61911 | 0.808663 | 2.77E-50 | -1.69E-46 |
| MS.gene060683 | MS.gene61911 | 0.80793 | 3.97E-50 | -1.69E-46 |
| MS.gene060685 | MS.gene61911 | 0.802338 | 5.88E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61911.t1 | MTR_7g099060 | 94.318 | 528 | 29 | 1 | 1 | 528 | 98 | 624 | 0.0 | 932 |
| MS.gene61911.t1 | MTR_4g089070 | 68.773 | 538 | 156 | 5 | 1 | 528 | 120 | 655 | 0.0 | 709 |
| MS.gene61911.t1 | MTR_4g032885 | 54.444 | 540 | 217 | 8 | 1 | 528 | 125 | 647 | 2.18e-177 | 514 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61911.t1 | AT1G61040 | 62.804 | 535 | 185 | 8 | 1 | 528 | 116 | 643 | 0.0 | 589 |
| MS.gene61911.t1 | AT1G61040 | 62.804 | 535 | 185 | 8 | 1 | 528 | 116 | 643 | 0.0 | 589 |
| MS.gene61911.t1 | AT1G61040 | 62.804 | 535 | 185 | 8 | 1 | 528 | 116 | 643 | 0.0 | 589 |
Find 143 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACTTACAAAATGGTTTA+TGG | 0.170699 | 3.3:+6354464 | MS.gene61911:CDS |
| CGTCCTTCTCCCGAGATTTC+CGG | 0.188455 | 3.3:-6355010 | None:intergenic |
| GGGAGTTCAGGCAGGGTTTA+TGG | 0.216936 | 3.3:+6355433 | MS.gene61911:CDS |
| AAAGAGGGGTCTAAAATTTC+AGG | 0.225292 | 3.3:+6354240 | MS.gene61911:CDS |
| TGGCTTGAGCTACTGAAATT+AGG | 0.237330 | 3.3:-6354291 | None:intergenic |
| GCTTTCAATGCTTTATTAAC+TGG | 0.248153 | 3.3:-6355107 | None:intergenic |
| TGCCACATTGCTAGCGATAT+TGG | 0.272264 | 3.3:-6355392 | None:intergenic |
| CAAGGTCAAAACTTACAAAA+TGG | 0.282281 | 3.3:+6354457 | MS.gene61911:CDS |
| CAGAGAATTGAAGAAGTTGT+TGG | 0.303542 | 3.3:+6355464 | MS.gene61911:CDS |
| TTCTCAGCTGCAACATTTAG+TGG | 0.306966 | 3.3:-6354891 | None:intergenic |
| GTCCTTCTCCCGAGATTTCC+GGG | 0.324137 | 3.3:-6355009 | None:intergenic |
| TGGTGGAGCGCAGGGAGTTC+AGG | 0.326248 | 3.3:+6355421 | MS.gene61911:CDS |
| GACGGCCACTGCCGAGGCTT+TGG | 0.334682 | 3.3:+6355280 | MS.gene61911:CDS |
| TGATTGTTGGTTGTTTCGTT+AGG | 0.335264 | 3.3:+6354505 | MS.gene61911:CDS |
| GAGGCTTTGGAAGCTGCTGC+TGG | 0.336521 | 3.3:+6355293 | MS.gene61911:CDS |
| CTCACGCTTGGATGCTATCT+TGG | 0.336928 | 3.3:-6354055 | None:intergenic |
| TTGGAAGCTGCTGCTGGTGC+TGG | 0.337203 | 3.3:+6355299 | MS.gene61911:CDS |
| CTAGTCCATCTCCTTGAAAA+AGG | 0.345767 | 3.3:-6355149 | None:intergenic |
| TCTAATTTATACAGTCGATT+AGG | 0.352085 | 3.3:-6354600 | None:intergenic |
| TTCAGCTCGCGATGTGCTTC+CGG | 0.380178 | 3.3:-6354219 | None:intergenic |
| GACTCTGTTCCTTCATCCAC+TGG | 0.384610 | 3.3:-6355344 | None:intergenic |
| CCAGACAAAACTGCAAGAAT+TGG | 0.386133 | 3.3:+6354980 | MS.gene61911:CDS |
| CTCTTCTAACATCTGCTTCA+CGG | 0.393437 | 3.3:-6354847 | None:intergenic |
| CTGAGATGAACAGAAAGAAC+AGG | 0.394551 | 3.3:+6355051 | MS.gene61911:CDS |
| ACCTACTTTCACTTTCACTA+TGG | 0.405201 | 3.3:-6354311 | None:intergenic |
| GGAGCGCAGGGAGTTCAGGC+AGG | 0.411409 | 3.3:+6355425 | MS.gene61911:CDS |
| GCAGCTGGAAATAATACTTC+TGG | 0.411995 | 3.3:+6355212 | MS.gene61911:CDS |
| TCTGGTGGTGCAGTGGGTGA+TGG | 0.416049 | 3.3:+6355230 | MS.gene61911:CDS |
| ACAAGTACTTGAATGTTGTC+TGG | 0.416298 | 3.3:+6354637 | MS.gene61911:CDS |
| TGTTTCGTTAGGGTTGGTAT+TGG | 0.420135 | 3.3:+6354516 | MS.gene61911:CDS |
| TACATTTCCCTTCTCACGCT+TGG | 0.421650 | 3.3:-6354067 | None:intergenic |
| CTCTGCTGCGAGGTGGCAAA+TGG | 0.421789 | 3.3:+6354671 | MS.gene61911:CDS |
| GGACCGGTTGAAAAGGGAAT+TGG | 0.431061 | 3.3:+6354914 | MS.gene61911:CDS |
| GGGTCTAAAATTTCAGGATC+AGG | 0.435083 | 3.3:+6354246 | MS.gene61911:CDS |
| CCAGCTGCAGCCTCTTCAGC+CGG | 0.436278 | 3.3:-6355197 | None:intergenic |
| CTGAGAAGGACCGGTTGAAA+AGG | 0.436446 | 3.3:+6354907 | MS.gene61911:CDS |
| GATGGAGGCTGCAATGGGAT+TGG | 0.437943 | 3.3:+6355248 | MS.gene61911:CDS |
| GTCTGATAGGGCTGCTAAGA+AGG | 0.438794 | 3.3:+6354014 | MS.gene61911:CDS |
| GGAGTTTAAACAGTGGGTTA+AGG | 0.439170 | 3.3:+6354725 | MS.gene61911:CDS |
| CTAGCAATGTGGCAAAAGTT+TGG | 0.440126 | 3.3:+6355401 | MS.gene61911:CDS |
| GTTGGTTGTTTCGTTAGGGT+TGG | 0.442169 | 3.3:+6354510 | MS.gene61911:CDS |
| TCGTTAGGGTTGGTATTGGC+AGG | 0.445479 | 3.3:+6354520 | MS.gene61911:CDS |
| GCATTGAAAGCAGGGGAGGC+AGG | 0.447530 | 3.3:+6355119 | MS.gene61911:CDS |
| AAATTAGGTTTCCCTATTTG+CGG | 0.450487 | 3.3:-6354276 | None:intergenic |
| GTTAATAAAGCATTGAAAGC+AGG | 0.455533 | 3.3:+6355110 | MS.gene61911:CDS |
| TGGAGGAATCCCGGAAATCT+CGG | 0.458345 | 3.3:+6355000 | MS.gene61911:CDS |
| CAAAGACTGGGCCTATCTAC+AGG | 0.458836 | 3.3:+6354544 | MS.gene61911:CDS |
| CCGGCTGAAGAGGCTGCAGC+TGG | 0.464826 | 3.3:+6355197 | MS.gene61911:CDS |
| TTCTGACAGGTCAGCTGCTA+AGG | 0.465616 | 3.3:+6354149 | MS.gene61911:CDS |
| CTCAGAAAGCCTCAGAGCCT+TGG | 0.470974 | 3.3:-6355033 | None:intergenic |
| GAACTACTATAATTCAAAAC+CGG | 0.473536 | 3.3:+6355178 | MS.gene61911:CDS |
| ATTTGAAAAGCCATCGTTTG+AGG | 0.474055 | 3.3:+6354413 | MS.gene61911:CDS |
| GCAAAAGTTTGGTGGAGCGC+AGG | 0.478459 | 3.3:+6355412 | MS.gene61911:CDS |
| GATTGTTGGTTGTTTCGTTA+GGG | 0.478505 | 3.3:+6354506 | MS.gene61911:CDS |
| GTGGGTGATGGAGGCTGCAA+TGG | 0.479445 | 3.3:+6355242 | MS.gene61911:CDS |
| GCCTATCTACAGGCTCTGTA+TGG | 0.481256 | 3.3:+6354554 | MS.gene61911:CDS |
| AGCAGCAGCTTCCAAAGCCT+CGG | 0.484282 | 3.3:-6355291 | None:intergenic |
| GGTATTGGCAGGTCAAAGAC+TGG | 0.484693 | 3.3:+6354531 | MS.gene61911:CDS |
| CAAGGAGATGGACTAGATCA+AGG | 0.488397 | 3.3:+6355156 | MS.gene61911:CDS |
| CAAGTACTTGAATGTTGTCT+GGG | 0.495702 | 3.3:+6354638 | MS.gene61911:CDS |
| CGAGAAGACGGAAGAGGAGG+CGG | 0.500413 | 3.3:-6354105 | None:intergenic |
| GGCTGCAATGGGATTGGAGC+TGG | 0.501509 | 3.3:+6355254 | MS.gene61911:CDS |
| AACATTCAAGTACTTGTATG+TGG | 0.501552 | 3.3:-6354631 | None:intergenic |
| GTTTAAACTCCTCCTCAAGC+GGG | 0.503277 | 3.3:-6354713 | None:intergenic |
| ACCATACAGAGCCTGTAGAT+AGG | 0.505421 | 3.3:-6354555 | None:intergenic |
| TGCAAGAATTGGAGGAATCC+CGG | 0.506961 | 3.3:+6354991 | MS.gene61911:CDS |
| AGCTTCCAAAGCCTCGGCAG+TGG | 0.512251 | 3.3:-6355285 | None:intergenic |
| TGCTGCTGGTGCTGGAAAGT+TGG | 0.516833 | 3.3:+6355307 | MS.gene61911:CDS |
| CTTCAACATCCTCGTCACTA+CGG | 0.517935 | 3.3:-6354335 | None:intergenic |
| GAAGCTTTGTCTGAAAATGA+AGG | 0.519185 | 3.3:+6354354 | MS.gene61911:CDS |
| GACAAAACTGCAAGAATTGG+AGG | 0.524371 | 3.3:+6354983 | MS.gene61911:CDS |
| TTCAACATCCTCGTCACTAC+GGG | 0.525338 | 3.3:-6354334 | None:intergenic |
| TGAGAAGGACCGGTTGAAAA+GGG | 0.526022 | 3.3:+6354908 | MS.gene61911:CDS |
| GGAGGAATCCCGGAAATCTC+GGG | 0.526557 | 3.3:+6355001 | MS.gene61911:CDS |
| TGGGTGATGGAGGCTGCAAT+GGG | 0.529895 | 3.3:+6355243 | MS.gene61911:CDS |
| TTAATAAAGCATTGAAAGCA+GGG | 0.529926 | 3.3:+6355111 | MS.gene61911:CDS |
| GGTGGTGCAGTGGGTGATGG+AGG | 0.534826 | 3.3:+6355233 | MS.gene61911:CDS |
| AAGCTTTGTCTGAAAATGAA+GGG | 0.535182 | 3.3:+6354355 | MS.gene61911:CDS |
| TAATTCAAAACCGGCTGAAG+AGG | 0.535280 | 3.3:+6355187 | MS.gene61911:CDS |
| TGTCTGGATCTTCTCTACTC+CGG | 0.540198 | 3.3:-6354964 | None:intergenic |
| ATGTTGCAGCTGAGAAGGAC+CGG | 0.542009 | 3.3:+6354898 | MS.gene61911:CDS |
| ACTAAATGTTGCAGCTGAGA+AGG | 0.543890 | 3.3:+6354893 | MS.gene61911:CDS |
| TGAGGAGGAGTTTAAACAGT+GGG | 0.546108 | 3.3:+6354719 | MS.gene61911:CDS |
| TGAATGAACTGCGTGCTAAG+AGG | 0.547152 | 3.3:+6354181 | MS.gene61911:CDS |
| AGCACATCGCGAGCTGAAAG+AGG | 0.547212 | 3.3:+6354224 | MS.gene61911:CDS |
| GAGCGCAGGGAGTTCAGGCA+GGG | 0.549229 | 3.3:+6355426 | MS.gene61911:CDS |
| ATCCCGGAAATCTCGGGAGA+AGG | 0.549427 | 3.3:+6355007 | MS.gene61911:CDS |
| GATAGCATCCAAGCGTGAGA+AGG | 0.551586 | 3.3:+6354059 | MS.gene61911:CDS |
| GAGGCTGAAACAGCGAGAGC+CGG | 0.553800 | 3.3:+6354200 | MS.gene61911:CDS |
| TGGTATGACGGCCACTGCCG+AGG | 0.559819 | 3.3:+6355274 | MS.gene61911:CDS |
| ATAGCATCCAAGCGTGAGAA+GGG | 0.562319 | 3.3:+6354060 | MS.gene61911:CDS |
| AAGTAGAGCGAAGTGGTGGC+CGG | 0.562543 | 3.3:+6354748 | MS.gene61911:CDS |
| GGTGATTACAAGAGAAGAAG+AGG | 0.564356 | 3.3:+6355539 | MS.gene61911:CDS |
| CATCTAGCCTCTTCAGCATC+CGG | 0.564400 | 3.3:-6354767 | None:intergenic |
| GAAAGCAAGAACGATGCAGC+CGG | 0.567987 | 3.3:+6354945 | MS.gene61911:CDS |
| CATTTGCCACCTCGCAGCAG+AGG | 0.570644 | 3.3:-6354670 | None:intergenic |
| ACAAGAGCTCCAGTGGATGA+AGG | 0.572277 | 3.3:+6355335 | MS.gene61911:CDS |
| GTGGTGGCCGGATGCTGAAG+AGG | 0.573366 | 3.3:+6354760 | MS.gene61911:CDS |
| GACAGGTCAGCTGCTAAGGA+TGG | 0.574292 | 3.3:+6354153 | MS.gene61911:CDS |
| CAAAAGTTTGGTGGAGCGCA+GGG | 0.575970 | 3.3:+6355413 | MS.gene61911:CDS |
| GATGATGACAAGATAATGCC+TGG | 0.576356 | 3.3:+6354390 | MS.gene61911:CDS |
| GCAATGTGGCAAAAGTTTGG+TGG | 0.581264 | 3.3:+6355404 | MS.gene61911:CDS |
| ATCACACGAGAAGACGGAAG+AGG | 0.585226 | 3.3:-6354111 | None:intergenic |
| GCCATAGTGAAAGTGAAAGT+AGG | 0.587909 | 3.3:+6354310 | MS.gene61911:CDS |
| GCACATCGCGAGCTGAAAGA+GGG | 0.588648 | 3.3:+6354225 | MS.gene61911:CDS |
| TGTTTAAACTCCTCCTCAAG+CGG | 0.589955 | 3.3:-6354714 | None:intergenic |
| ATCTCGGGAGAAGGACGCCA+AGG | 0.590489 | 3.3:+6355016 | MS.gene61911:CDS |
| GGTCTAAAATTTCAGGATCA+GGG | 0.591143 | 3.3:+6354247 | MS.gene61911:CDS |
| AATACTTCTGGTGGTGCAGT+GGG | 0.597159 | 3.3:+6355224 | MS.gene61911:CDS |
| TAAAAGAAATCACCATTCCA+AGG | 0.599048 | 3.3:+6354439 | MS.gene61911:CDS |
| TGCGAGGTGGCAAATGGCCA+TGG | 0.599400 | 3.3:+6354677 | MS.gene61911:CDS |
| CATCTACTAGATCTTCTGAC+AGG | 0.600420 | 3.3:+6354136 | MS.gene61911:CDS |
| TGGGATTGGAGCTGGTATGA+CGG | 0.607971 | 3.3:+6355262 | MS.gene61911:CDS |
| GATGACATCACACGAGAAGA+CGG | 0.608285 | 3.3:-6354117 | None:intergenic |
| TTTAAACTCCTCCTCAAGCG+GGG | 0.608619 | 3.3:-6354712 | None:intergenic |
| GTCTAAAATTTCAGGATCAG+GGG | 0.613225 | 3.3:+6354248 | MS.gene61911:CDS |
| TAATACTTCTGGTGGTGCAG+TGG | 0.614229 | 3.3:+6355223 | MS.gene61911:CDS |
| GAGTCCCAGAAAACGATGGA+AGG | 0.614728 | 3.3:+6355492 | MS.gene61911:CDS |
| ACACGAGAAGACGGAAGAGG+AGG | 0.615894 | 3.3:-6354108 | None:intergenic |
| GGTAGACACAAGAGCTCCAG+TGG | 0.616107 | 3.3:+6355328 | MS.gene61911:CDS |
| AGAAGGACGCCAAGGCTCTG+AGG | 0.617944 | 3.3:+6355024 | MS.gene61911:CDS |
| GCTGAAGAGGCTAGATGTGG+TGG | 0.622446 | 3.3:+6354773 | MS.gene61911:CDS |
| TCTAAAATTTCAGGATCAGG+GGG | 0.625310 | 3.3:+6354249 | MS.gene61911:CDS |
| TAAAGCATTGAAAGCAGGGG+AGG | 0.625312 | 3.3:+6355115 | MS.gene61911:CDS |
| GTATTGGCAGGTCAAAGACT+GGG | 0.637870 | 3.3:+6354532 | MS.gene61911:CDS |
| CATCAGCTGACATTAACAGT+TGG | 0.642633 | 3.3:+6355518 | MS.gene61911:CDS |
| CACATCGCGAGCTGAAAGAG+GGG | 0.647083 | 3.3:+6354226 | MS.gene61911:CDS |
| ATGAGACCTCTGCTGCGAGG+TGG | 0.647938 | 3.3:+6354664 | MS.gene61911:CDS |
| AAGTAGGTCCCGTAGTGACG+AGG | 0.658216 | 3.3:+6354326 | MS.gene61911:CDS |
| TAATAAAGCATTGAAAGCAG+GGG | 0.659215 | 3.3:+6355112 | MS.gene61911:CDS |
| ATACAGTCGATTAGGATCCG+AGG | 0.660349 | 3.3:-6354592 | None:intergenic |
| GTGATTACAAGAGAAGAAGA+GGG | 0.663120 | 3.3:+6355540 | MS.gene61911:CDS |
| AAGGAAGTAGAGCGAAGTGG+TGG | 0.663190 | 3.3:+6354744 | MS.gene61911:CDS |
| TTAAACTCCTCCTCAAGCGG+GGG | 0.674132 | 3.3:-6354711 | None:intergenic |
| GTTAAGGAAGTAGAGCGAAG+TGG | 0.674298 | 3.3:+6354741 | MS.gene61911:CDS |
| TTTCGAGTCCCAGAAAACGA+TGG | 0.687907 | 3.3:+6355488 | MS.gene61911:CDS |
| AAGTACTTGAATGTTGTCTG+GGG | 0.689030 | 3.3:+6354639 | MS.gene61911:CDS |
| TTGAGGAGGAGTTTAAACAG+TGG | 0.689149 | 3.3:+6354718 | MS.gene61911:CDS |
| TGCCAATATCGCTAGCAATG+TGG | 0.691084 | 3.3:+6355390 | MS.gene61911:CDS |
| GCTGGAAATAATACTTCTGG+TGG | 0.697224 | 3.3:+6355215 | MS.gene61911:CDS |
| TTCTAACATCTGCTTCACGG+TGG | 0.711073 | 3.3:-6354844 | None:intergenic |
| GATGCTGAAGAGGCTAGATG+TGG | 0.716515 | 3.3:+6354770 | MS.gene61911:CDS |
| GAAATGAGACCTCTGCTGCG+AGG | 0.717415 | 3.3:+6354661 | MS.gene61911:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTTACAAAATGGTTTA+TGG | + | chr3.3:6354464-6354483 | MS.gene61911:CDS | 20.0% |
| ! | GAACTACTATAATTCAAAAC+CGG | + | chr3.3:6355178-6355197 | MS.gene61911:CDS | 25.0% |
| ! | TCTAATTTATACAGTCGATT+AGG | - | chr3.3:6354603-6354622 | None:intergenic | 25.0% |
| !!! | TTAATAAAGCATTGAAAGCA+GGG | + | chr3.3:6355111-6355130 | MS.gene61911:CDS | 25.0% |
| AAATTAGGTTTCCCTATTTG+CGG | - | chr3.3:6354279-6354298 | None:intergenic | 30.0% | |
| AACAATCAACTCCTCAAAAA+AGG | - | chr3.3:6354493-6354512 | None:intergenic | 30.0% | |
| AACATTCAAGTACTTGTATG+TGG | - | chr3.3:6354634-6354653 | None:intergenic | 30.0% | |
| AAGAGAAAAAATCTATCTCG+CGG | + | chr3.3:6354865-6354884 | MS.gene61911:CDS | 30.0% | |
| ACAATCAACTCCTCAAAAAA+GGG | - | chr3.3:6354492-6354511 | None:intergenic | 30.0% | |
| CAAGGTCAAAACTTACAAAA+TGG | + | chr3.3:6354457-6354476 | MS.gene61911:CDS | 30.0% | |
| TAAAAGAAATCACCATTCCA+AGG | + | chr3.3:6354439-6354458 | MS.gene61911:CDS | 30.0% | |
| ! | AAGCTTTGTCTGAAAATGAA+GGG | + | chr3.3:6354355-6354374 | MS.gene61911:CDS | 30.0% |
| ! | AGAGATGATTTTGTCTGATA+GGG | + | chr3.3:6354002-6354021 | MS.gene61911:CDS | 30.0% |
| ! | GCTTTCAATGCTTTATTAAC+TGG | - | chr3.3:6355110-6355129 | None:intergenic | 30.0% |
| !! | CATTTTGTAAGTTTTGACCT+TGG | - | chr3.3:6354459-6354478 | None:intergenic | 30.0% |
| !! | GTTAATAAAGCATTGAAAGC+AGG | + | chr3.3:6355110-6355129 | MS.gene61911:CDS | 30.0% |
| !! | TAATAAAGCATTGAAAGCAG+GGG | + | chr3.3:6355112-6355131 | MS.gene61911:CDS | 30.0% |
| !!! | TTTTTTGAGGAGTTGATTGT+TGG | + | chr3.3:6354492-6354511 | MS.gene61911:CDS | 30.0% |
| AAGTACTTGAATGTTGTCTG+GGG | + | chr3.3:6354639-6354658 | MS.gene61911:CDS | 35.0% | |
| ACAAGTACTTGAATGTTGTC+TGG | + | chr3.3:6354637-6354656 | MS.gene61911:CDS | 35.0% | |
| ACCTACTTTCACTTTCACTA+TGG | - | chr3.3:6354314-6354333 | None:intergenic | 35.0% | |
| ATTTGAAAAGCCATCGTTTG+AGG | + | chr3.3:6354413-6354432 | MS.gene61911:CDS | 35.0% | |
| CAAGTACTTGAATGTTGTCT+GGG | + | chr3.3:6354638-6354657 | MS.gene61911:CDS | 35.0% | |
| CAGAGAATTGAAGAAGTTGT+TGG | + | chr3.3:6355464-6355483 | MS.gene61911:CDS | 35.0% | |
| GTGATTACAAGAGAAGAAGA+GGG | + | chr3.3:6355540-6355559 | MS.gene61911:CDS | 35.0% | |
| ! | AAAGAGGGGTCTAAAATTTC+AGG | + | chr3.3:6354240-6354259 | MS.gene61911:CDS | 35.0% |
| ! | GAAGCTTTGTCTGAAAATGA+AGG | + | chr3.3:6354354-6354373 | MS.gene61911:CDS | 35.0% |
| ! | GAGAGATGATTTTGTCTGAT+AGG | + | chr3.3:6354001-6354020 | MS.gene61911:CDS | 35.0% |
| ! | GATTGTTGGTTGTTTCGTTA+GGG | + | chr3.3:6354506-6354525 | MS.gene61911:CDS | 35.0% |
| ! | GGTCTAAAATTTCAGGATCA+GGG | + | chr3.3:6354247-6354266 | MS.gene61911:CDS | 35.0% |
| ! | GTCTAAAATTTCAGGATCAG+GGG | + | chr3.3:6354248-6354267 | MS.gene61911:CDS | 35.0% |
| ! | TCTAAAATTTCAGGATCAGG+GGG | + | chr3.3:6354249-6354268 | MS.gene61911:CDS | 35.0% |
| ! | TCTTTTATGTCCTCAAACGA+TGG | - | chr3.3:6354426-6354445 | None:intergenic | 35.0% |
| ! | TGATTGTTGGTTGTTTCGTT+AGG | + | chr3.3:6354505-6354524 | MS.gene61911:CDS | 35.0% |
| ! | TTTCCAATTCCCTTTTCAAC+CGG | - | chr3.3:6354920-6354939 | None:intergenic | 35.0% |
| !! | CAGGTTATGATCCTTTTTCA+AGG | + | chr3.3:6355138-6355157 | MS.gene61911:CDS | 35.0% |
| !! | TGTAAGTTTTGACCTTGGAA+TGG | - | chr3.3:6354454-6354473 | None:intergenic | 35.0% |
| !!! | ATGATCCTTTTTCAAGGAGA+TGG | + | chr3.3:6355144-6355163 | MS.gene61911:CDS | 35.0% |
| ACTAAATGTTGCAGCTGAGA+AGG | + | chr3.3:6354893-6354912 | MS.gene61911:CDS | 40.0% | |
| AGAAAAAATCTATCTCGCGG+AGG | + | chr3.3:6354868-6354887 | MS.gene61911:CDS | 40.0% | |
| CATCAGCTGACATTAACAGT+TGG | + | chr3.3:6355518-6355537 | MS.gene61911:CDS | 40.0% | |
| CATCTACTAGATCTTCTGAC+AGG | + | chr3.3:6354136-6354155 | MS.gene61911:CDS | 40.0% | |
| CCAGACAAAACTGCAAGAAT+TGG | + | chr3.3:6354980-6354999 | MS.gene61911:CDS | 40.0% | |
| CTAGCAATGTGGCAAAAGTT+TGG | + | chr3.3:6355401-6355420 | MS.gene61911:CDS | 40.0% | |
| CTAGTCCATCTCCTTGAAAA+AGG | - | chr3.3:6355152-6355171 | None:intergenic | 40.0% | |
| CTCTTCTAACATCTGCTTCA+CGG | - | chr3.3:6354850-6354869 | None:intergenic | 40.0% | |
| CTGAGATGAACAGAAAGAAC+AGG | + | chr3.3:6355051-6355070 | MS.gene61911:CDS | 40.0% | |
| GACAAAACTGCAAGAATTGG+AGG | + | chr3.3:6354983-6355002 | MS.gene61911:CDS | 40.0% | |
| GATGATGACAAGATAATGCC+TGG | + | chr3.3:6354390-6354409 | MS.gene61911:CDS | 40.0% | |
| GCAGCTGGAAATAATACTTC+TGG | + | chr3.3:6355212-6355231 | MS.gene61911:CDS | 40.0% | |
| GCCATAGTGAAAGTGAAAGT+AGG | + | chr3.3:6354310-6354329 | MS.gene61911:CDS | 40.0% | |
| GCTGGAAATAATACTTCTGG+TGG | + | chr3.3:6355215-6355234 | MS.gene61911:CDS | 40.0% | |
| GGTGAAAAATGTTGATGCCT+CGG | + | chr3.3:6354575-6354594 | MS.gene61911:CDS | 40.0% | |
| GGTGATTACAAGAGAAGAAG+AGG | + | chr3.3:6355539-6355558 | MS.gene61911:CDS | 40.0% | |
| TAATTCAAAACCGGCTGAAG+AGG | + | chr3.3:6355187-6355206 | MS.gene61911:CDS | 40.0% | |
| TGAGGAGGAGTTTAAACAGT+GGG | + | chr3.3:6354719-6354738 | MS.gene61911:CDS | 40.0% | |
| TGGCTTGAGCTACTGAAATT+AGG | - | chr3.3:6354294-6354313 | None:intergenic | 40.0% | |
| TGTTTAAACTCCTCCTCAAG+CGG | - | chr3.3:6354717-6354736 | None:intergenic | 40.0% | |
| TTCTCAGCTGCAACATTTAG+TGG | - | chr3.3:6354894-6354913 | None:intergenic | 40.0% | |
| TTGAGGAGGAGTTTAAACAG+TGG | + | chr3.3:6354718-6354737 | MS.gene61911:CDS | 40.0% | |
| ! | AACGATGGCTTTTCAAATCC+AGG | - | chr3.3:6354411-6354430 | None:intergenic | 40.0% |
| ! | GGGTCTAAAATTTCAGGATC+AGG | + | chr3.3:6354246-6354265 | MS.gene61911:CDS | 40.0% |
| !! | CCAATTCTTGCAGTTTTGTC+TGG | - | chr3.3:6354983-6355002 | None:intergenic | 40.0% |
| !! | GGAGTTTAAACAGTGGGTTA+AGG | + | chr3.3:6354725-6354744 | MS.gene61911:CDS | 40.0% |
| !! | TGTTTCGTTAGGGTTGGTAT+TGG | + | chr3.3:6354516-6354535 | MS.gene61911:CDS | 40.0% |
| !!! | GTTTATGGAGCCCTTTTTTG+AGG | + | chr3.3:6354479-6354498 | MS.gene61911:CDS | 40.0% |
| ACCATACAGAGCCTGTAGAT+AGG | - | chr3.3:6354558-6354577 | None:intergenic | 45.0% | |
| ATACAGTCGATTAGGATCCG+AGG | - | chr3.3:6354595-6354614 | None:intergenic | 45.0% | |
| ATAGCATCCAAGCGTGAGAA+GGG | + | chr3.3:6354060-6354079 | MS.gene61911:CDS | 45.0% | |
| CTTCAACATCCTCGTCACTA+CGG | - | chr3.3:6354338-6354357 | None:intergenic | 45.0% | |
| GATGACATCACACGAGAAGA+CGG | - | chr3.3:6354120-6354139 | None:intergenic | 45.0% | |
| GCAATGTGGCAAAAGTTTGG+TGG | + | chr3.3:6355404-6355423 | MS.gene61911:CDS | 45.0% | |
| GTTAAGGAAGTAGAGCGAAG+TGG | + | chr3.3:6354741-6354760 | MS.gene61911:CDS | 45.0% | |
| GTTTAAACTCCTCCTCAAGC+GGG | - | chr3.3:6354716-6354735 | None:intergenic | 45.0% | |
| TACATTTCCCTTCTCACGCT+TGG | - | chr3.3:6354070-6354089 | None:intergenic | 45.0% | |
| TGAATGAACTGCGTGCTAAG+AGG | + | chr3.3:6354181-6354200 | MS.gene61911:CDS | 45.0% | |
| TGAGAAGGACCGGTTGAAAA+GGG | + | chr3.3:6354908-6354927 | MS.gene61911:CDS | 45.0% | |
| TGCAAGAATTGGAGGAATCC+CGG | + | chr3.3:6354991-6355010 | MS.gene61911:CDS | 45.0% | |
| TGCCAATATCGCTAGCAATG+TGG | + | chr3.3:6355390-6355409 | MS.gene61911:CDS | 45.0% | |
| TGCCACATTGCTAGCGATAT+TGG | - | chr3.3:6355395-6355414 | None:intergenic | 45.0% | |
| TGTCTGGATCTTCTCTACTC+CGG | - | chr3.3:6354967-6354986 | None:intergenic | 45.0% | |
| TTCAACATCCTCGTCACTAC+GGG | - | chr3.3:6354337-6354356 | None:intergenic | 45.0% | |
| TTCTAACATCTGCTTCACGG+TGG | - | chr3.3:6354847-6354866 | None:intergenic | 45.0% | |
| TTTAAACTCCTCCTCAAGCG+GGG | - | chr3.3:6354715-6354734 | None:intergenic | 45.0% | |
| ! | AATACTTCTGGTGGTGCAGT+GGG | + | chr3.3:6355224-6355243 | MS.gene61911:CDS | 45.0% |
| ! | GACTCCTTCCATCGTTTTCT+GGG | - | chr3.3:6355499-6355518 | None:intergenic | 45.0% |
| ! | GTATTGGCAGGTCAAAGACT+GGG | + | chr3.3:6354532-6354551 | MS.gene61911:CDS | 45.0% |
| ! | GTTGGTTGTTTCGTTAGGGT+TGG | + | chr3.3:6354510-6354529 | MS.gene61911:CDS | 45.0% |
| ! | TAATACTTCTGGTGGTGCAG+TGG | + | chr3.3:6355223-6355242 | MS.gene61911:CDS | 45.0% |
| ! | TGACTCCTTCCATCGTTTTC+TGG | - | chr3.3:6355500-6355519 | None:intergenic | 45.0% |
| ! | TTTCGAGTCCCAGAAAACGA+TGG | + | chr3.3:6355488-6355507 | MS.gene61911:CDS | 45.0% |
| !! | CAAGGAGATGGACTAGATCA+AGG | + | chr3.3:6355156-6355175 | MS.gene61911:CDS | 45.0% |
| !! | TAAAGCATTGAAAGCAGGGG+AGG | + | chr3.3:6355115-6355134 | MS.gene61911:CDS | 45.0% |
| AAGGAAGTAGAGCGAAGTGG+TGG | + | chr3.3:6354744-6354763 | MS.gene61911:CDS | 50.0% | |
| ACAAGAGCTCCAGTGGATGA+AGG | + | chr3.3:6355335-6355354 | MS.gene61911:CDS | 50.0% | |
| ATCACACGAGAAGACGGAAG+AGG | - | chr3.3:6354114-6354133 | None:intergenic | 50.0% | |
| ATGTTGCAGCTGAGAAGGAC+CGG | + | chr3.3:6354898-6354917 | MS.gene61911:CDS | 50.0% | |
| CAAAGACTGGGCCTATCTAC+AGG | + | chr3.3:6354544-6354563 | MS.gene61911:CDS | 50.0% | |
| CATCTAGCCTCTTCAGCATC+CGG | - | chr3.3:6354770-6354789 | None:intergenic | 50.0% | |
| CTCACGCTTGGATGCTATCT+TGG | - | chr3.3:6354058-6354077 | None:intergenic | 50.0% | |
| CTGAGAAGGACCGGTTGAAA+AGG | + | chr3.3:6354907-6354926 | MS.gene61911:CDS | 50.0% | |
| GAAAGCAAGAACGATGCAGC+CGG | + | chr3.3:6354945-6354964 | MS.gene61911:CDS | 50.0% | |
| GACTCTGTTCCTTCATCCAC+TGG | - | chr3.3:6355347-6355366 | None:intergenic | 50.0% | |
| GAGTCCCAGAAAACGATGGA+AGG | + | chr3.3:6355492-6355511 | MS.gene61911:CDS | 50.0% | |
| GATAGCATCCAAGCGTGAGA+AGG | + | chr3.3:6354059-6354078 | MS.gene61911:CDS | 50.0% | |
| GATGCTGAAGAGGCTAGATG+TGG | + | chr3.3:6354770-6354789 | MS.gene61911:CDS | 50.0% | |
| GCCTATCTACAGGCTCTGTA+TGG | + | chr3.3:6354554-6354573 | MS.gene61911:CDS | 50.0% | |
| GGACCGGTTGAAAAGGGAAT+TGG | + | chr3.3:6354914-6354933 | MS.gene61911:CDS | 50.0% | |
| GTCTGATAGGGCTGCTAAGA+AGG | + | chr3.3:6354014-6354033 | MS.gene61911:CDS | 50.0% | |
| TGGAGGAATCCCGGAAATCT+CGG | + | chr3.3:6355000-6355019 | MS.gene61911:CDS | 50.0% | |
| TGGGATTGGAGCTGGTATGA+CGG | + | chr3.3:6355262-6355281 | MS.gene61911:CDS | 50.0% | |
| TTAAACTCCTCCTCAAGCGG+GGG | - | chr3.3:6354714-6354733 | None:intergenic | 50.0% | |
| TTCTGACAGGTCAGCTGCTA+AGG | + | chr3.3:6354149-6354168 | MS.gene61911:CDS | 50.0% | |
| ! | CAAAAGTTTGGTGGAGCGCA+GGG | + | chr3.3:6355413-6355432 | MS.gene61911:CDS | 50.0% |
| ! | CAGGGGGTTTTCCGCAAATA+GGG | + | chr3.3:6354265-6354284 | MS.gene61911:CDS | 50.0% |
| ! | TCAGGGGGTTTTCCGCAAAT+AGG | + | chr3.3:6354264-6354283 | MS.gene61911:CDS | 50.0% |
| !! | GGTATTGGCAGGTCAAAGAC+TGG | + | chr3.3:6354531-6354550 | MS.gene61911:CDS | 50.0% |
| !! | TCGTTAGGGTTGGTATTGGC+AGG | + | chr3.3:6354520-6354539 | MS.gene61911:CDS | 50.0% |
| AAGTAGAGCGAAGTGGTGGC+CGG | + | chr3.3:6354748-6354767 | MS.gene61911:CDS | 55.0% | |
| AAGTAGGTCCCGTAGTGACG+AGG | + | chr3.3:6354326-6354345 | MS.gene61911:CDS | 55.0% | |
| ACACGAGAAGACGGAAGAGG+AGG | - | chr3.3:6354111-6354130 | None:intergenic | 55.0% | |
| AGCACATCGCGAGCTGAAAG+AGG | + | chr3.3:6354224-6354243 | MS.gene61911:CDS | 55.0% | |
| AGCAGCAGCTTCCAAAGCCT+CGG | - | chr3.3:6355294-6355313 | None:intergenic | 55.0% | |
| ATCCCGGAAATCTCGGGAGA+AGG | + | chr3.3:6355007-6355026 | MS.gene61911:CDS | 55.0% | |
| CACATCGCGAGCTGAAAGAG+GGG | + | chr3.3:6354226-6354245 | MS.gene61911:CDS | 55.0% | |
| CGTCCTTCTCCCGAGATTTC+CGG | - | chr3.3:6355013-6355032 | None:intergenic | 55.0% | |
| CTCAGAAAGCCTCAGAGCCT+TGG | - | chr3.3:6355036-6355055 | None:intergenic | 55.0% | |
| GAAATGAGACCTCTGCTGCG+AGG | + | chr3.3:6354661-6354680 | MS.gene61911:CDS | 55.0% | |
| GACAGGTCAGCTGCTAAGGA+TGG | + | chr3.3:6354153-6354172 | MS.gene61911:CDS | 55.0% | |
| GATGGAGGCTGCAATGGGAT+TGG | + | chr3.3:6355248-6355267 | MS.gene61911:CDS | 55.0% | |
| GCACATCGCGAGCTGAAAGA+GGG | + | chr3.3:6354225-6354244 | MS.gene61911:CDS | 55.0% | |
| GCTGAAGAGGCTAGATGTGG+TGG | + | chr3.3:6354773-6354792 | MS.gene61911:CDS | 55.0% | |
| GGAGGAATCCCGGAAATCTC+GGG | + | chr3.3:6355001-6355020 | MS.gene61911:CDS | 55.0% | |
| GGGAGTTCAGGCAGGGTTTA+TGG | + | chr3.3:6355433-6355452 | MS.gene61911:CDS | 55.0% | |
| GGTAGACACAAGAGCTCCAG+TGG | + | chr3.3:6355328-6355347 | MS.gene61911:CDS | 55.0% | |
| GTCCTTCTCCCGAGATTTCC+GGG | - | chr3.3:6355012-6355031 | None:intergenic | 55.0% | |
| TTCAGCTCGCGATGTGCTTC+CGG | - | chr3.3:6354222-6354241 | None:intergenic | 55.0% | |
| ! | GCAAAAGTTTGGTGGAGCGC+AGG | + | chr3.3:6355412-6355431 | MS.gene61911:CDS | 55.0% |
| ! | TGCTGCTGGTGCTGGAAAGT+TGG | + | chr3.3:6355307-6355326 | MS.gene61911:CDS | 55.0% |
| !! | TGGGTGATGGAGGCTGCAAT+GGG | + | chr3.3:6355243-6355262 | MS.gene61911:CDS | 55.0% |
| AGAAGGACGCCAAGGCTCTG+AGG | + | chr3.3:6355024-6355043 | MS.gene61911:CDS | 60.0% | |
| AGCTTCCAAAGCCTCGGCAG+TGG | - | chr3.3:6355288-6355307 | None:intergenic | 60.0% | |
| ATCTCGGGAGAAGGACGCCA+AGG | + | chr3.3:6355016-6355035 | MS.gene61911:CDS | 60.0% | |
| ATGAGACCTCTGCTGCGAGG+TGG | + | chr3.3:6354664-6354683 | MS.gene61911:CDS | 60.0% | |
| CATTTGCCACCTCGCAGCAG+AGG | - | chr3.3:6354673-6354692 | None:intergenic | 60.0% | |
| CGAGAAGACGGAAGAGGAGG+CGG | - | chr3.3:6354108-6354127 | None:intergenic | 60.0% | |
| CGGGGGAGAATCGCTAACCA+TGG | - | chr3.3:6354697-6354716 | None:intergenic | 60.0% | |
| CTCTGCTGCGAGGTGGCAAA+TGG | + | chr3.3:6354671-6354690 | MS.gene61911:CDS | 60.0% | |
| GAGGCTGAAACAGCGAGAGC+CGG | + | chr3.3:6354200-6354219 | MS.gene61911:CDS | 60.0% | |
| GCATTGAAAGCAGGGGAGGC+AGG | + | chr3.3:6355119-6355138 | MS.gene61911:CDS | 60.0% | |
| GGCTGCAATGGGATTGGAGC+TGG | + | chr3.3:6355254-6355273 | MS.gene61911:CDS | 60.0% | |
| TAGCGATTCTCCCCCGCTTG+AGG | + | chr3.3:6354701-6354720 | MS.gene61911:CDS | 60.0% | |
| TGCGAGGTGGCAAATGGCCA+TGG | + | chr3.3:6354677-6354696 | MS.gene61911:CDS | 60.0% | |
| TTGGAAGCTGCTGCTGGTGC+TGG | + | chr3.3:6355299-6355318 | MS.gene61911:CDS | 60.0% | |
| ! | TCTGGTGGTGCAGTGGGTGA+TGG | + | chr3.3:6355230-6355249 | MS.gene61911:CDS | 60.0% |
| !! | GAGGCTTTGGAAGCTGCTGC+TGG | + | chr3.3:6355293-6355312 | MS.gene61911:CDS | 60.0% |
| !! | GTGGGTGATGGAGGCTGCAA+TGG | + | chr3.3:6355242-6355261 | MS.gene61911:CDS | 60.0% |
| CCAGCTGCAGCCTCTTCAGC+CGG | - | chr3.3:6355200-6355219 | None:intergenic | 65.0% | |
| CGATTCTCCCCCGCTTGAGG+AGG | + | chr3.3:6354704-6354723 | MS.gene61911:CDS | 65.0% | |
| GAGCGCAGGGAGTTCAGGCA+GGG | + | chr3.3:6355426-6355445 | MS.gene61911:CDS | 65.0% | |
| GTGGTGGCCGGATGCTGAAG+AGG | + | chr3.3:6354760-6354779 | MS.gene61911:CDS | 65.0% | |
| TGGTATGACGGCCACTGCCG+AGG | + | chr3.3:6355274-6355293 | MS.gene61911:CDS | 65.0% | |
| TGGTGGAGCGCAGGGAGTTC+AGG | + | chr3.3:6355421-6355440 | MS.gene61911:CDS | 65.0% | |
| ! | GGTGGTGCAGTGGGTGATGG+AGG | + | chr3.3:6355233-6355252 | MS.gene61911:CDS | 65.0% |
| CCGGCTGAAGAGGCTGCAGC+TGG | + | chr3.3:6355197-6355216 | MS.gene61911:CDS | 70.0% | |
| GACGGCCACTGCCGAGGCTT+TGG | + | chr3.3:6355280-6355299 | MS.gene61911:CDS | 70.0% | |
| GGAGCGCAGGGAGTTCAGGC+AGG | + | chr3.3:6355425-6355444 | MS.gene61911:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 6353985 | 6355571 | 6353985 | ID=MS.gene61911 |
| chr3.3 | mRNA | 6353985 | 6355571 | 6353985 | ID=MS.gene61911.t1;Parent=MS.gene61911 |
| chr3.3 | exon | 6353985 | 6355571 | 6353985 | ID=MS.gene61911.t1.exon1;Parent=MS.gene61911.t1 |
| chr3.3 | CDS | 6353985 | 6355571 | 6353985 | ID=cds.MS.gene61911.t1;Parent=MS.gene61911.t1 |
| Gene Sequence |
| Protein sequence |
