Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61924.t1 | AES98394.1 | 63.7 | 226 | 20 | 1 | 5 | 168 | 4 | 229 | 1.70E-68 | 268.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61924.t1 | Q9FMM4 | 34.5 | 58 | 38 | 0 | 106 | 163 | 611 | 668 | 3.7e-08 | 59.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61924.t1 | G7KD92 | 63.7 | 226 | 20 | 1 | 5 | 168 | 4 | 229 | 1.2e-68 | 268.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene93489 | MS.gene61924 | PPI |
| MS.gene61924 | MS.gene28214 | PPI |
| MS.gene79416 | MS.gene61924 | PPI |
| MS.gene61924 | MS.gene93488 | PPI |
| MS.gene055988 | MS.gene61924 | PPI |
| MS.gene94534 | MS.gene61924 | PPI |
| MS.gene61924 | MS.gene017970 | PPI |
| MS.gene94527 | MS.gene61924 | PPI |
| MS.gene28215 | MS.gene61924 | PPI |
| MS.gene94533 | MS.gene61924 | PPI |
| MS.gene94532 | MS.gene61924 | PPI |
| MS.gene041075 | MS.gene61924 | PPI |
| MS.gene97792 | MS.gene61924 | PPI |
| MS.gene047623 | MS.gene61924 | PPI |
| MS.gene28213 | MS.gene61924 | PPI |
| MS.gene61924 | MS.gene94530 | PPI |
| MS.gene93487 | MS.gene61924 | PPI |
| MS.gene017995 | MS.gene61924 | PPI |
| MS.gene61924 | MS.gene94537 | PPI |
| MS.gene015160 | MS.gene61924 | PPI |
| MS.gene010343 | MS.gene61924 | PPI |
| MS.gene79417 | MS.gene61924 | PPI |
| MS.gene61924 | MS.gene52667 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61924.t1 | MTR_5g068000 | 94.286 | 70 | 4 | 0 | 99 | 168 | 160 | 229 | 3.79e-44 | 146 |
| MS.gene61924.t1 | MTR_5g068000 | 83.871 | 93 | 15 | 0 | 5 | 97 | 4 | 96 | 4.86e-44 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTTAATCTTCTAGTTTAT+AGG | 0.260336 | 5.2:-57684771 | MS.gene61924:intron |
| TCCATTGTTTCTCTCACTTT+AGG | 0.294080 | 5.2:+57686887 | None:intergenic |
| GAGAGAAACAATGGAGTATA+TGG | 0.346210 | 5.2:-57686879 | MS.gene61924:intron |
| AAGATTCTCACGTCGAATAT+TGG | 0.360759 | 5.2:+57685378 | None:intergenic |
| GACGTGAGAATCTTGAATTC+GGG | 0.361590 | 5.2:-57685369 | MS.gene61924:CDS |
| GAACAACATGTAACAACTAA+TGG | 0.374001 | 5.2:-57686944 | MS.gene61924:CDS |
| CGACGTGAGAATCTTGAATT+CGG | 0.378969 | 5.2:-57685370 | MS.gene61924:CDS |
| GTTTCTCTCACTTTAGGATC+AGG | 0.407404 | 5.2:+57686893 | None:intergenic |
| GGATCATCTTCAAATAGCTC+TGG | 0.423511 | 5.2:+57687073 | None:intergenic |
| TGTTCAACAATCTGACCAAC+TGG | 0.432365 | 5.2:+57686962 | None:intergenic |
| ACAATCATGCTGCATTTGTC+TGG | 0.461362 | 5.2:-57685326 | MS.gene61924:intron |
| TTTACAACAATGAACACTAA+AGG | 0.485501 | 5.2:-57687527 | None:intergenic |
| ACATGAGTTGCATTAAAGAC+TGG | 0.489249 | 5.2:-57685104 | MS.gene61924:CDS |
| AATAGCTCTGGGTACATAGC+TGG | 0.501323 | 5.2:+57687085 | None:intergenic |
| TAGCTGGTAGGTGCCTACTT+TGG | 0.505697 | 5.2:+57687101 | None:intergenic |
| CTTCAAGCAACTTCCAAAGT+AGG | 0.505986 | 5.2:-57687114 | MS.gene61924:CDS |
| TCACGTAGATATTGAAAGAC+TGG | 0.509822 | 5.2:+57687052 | None:intergenic |
| CTTCTACATTGCGTATCCAC+CGG | 0.512860 | 5.2:+57685410 | None:intergenic |
| TGGTGAAGAAATTGAAAGAC+TGG | 0.535765 | 5.2:-57685145 | MS.gene61924:CDS |
| GATCATCTTCAAATAGCTCT+GGG | 0.557026 | 5.2:+57687074 | None:intergenic |
| GGATGCAGAAGCTTACCAAC+CGG | 0.573678 | 5.2:-57685429 | MS.gene61924:intron |
| GAAACTACTAAGATTCCAGT+TGG | 0.589740 | 5.2:-57686977 | MS.gene61924:CDS |
| TACATTGCGTATCCACCGGT+TGG | 0.594807 | 5.2:+57685414 | None:intergenic |
| GGCATACATTCTTAACAGCT+AGG | 0.595469 | 5.2:+57685079 | None:intergenic |
| TCCTAAAGTGAGAGAAACAA+TGG | 0.600914 | 5.2:-57686888 | MS.gene61924:CDS |
| TGCAGAAGCTTACCAACCGG+TGG | 0.631045 | 5.2:-57685426 | MS.gene61924:intron |
| GCTCTGGGTACATAGCTGGT+AGG | 0.632647 | 5.2:+57687089 | None:intergenic |
| ATGTCTCTAGGTCAAACTGA+AGG | 0.638904 | 5.2:-57687145 | MS.gene61924:intron |
| ACGTGAGAATCTTGAATTCG+GGG | 0.690850 | 5.2:-57685368 | MS.gene61924:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+GGG | - | chr5.2:57685754-57685773 | MS.gene61924:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | chr5.2:57685773-57685754 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr5.2:57685753-57685772 | MS.gene61924:intron | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr5.2:57685772-57685753 | None:intergenic | 0.0% |
| !! | CTAATTATAATTCTAAATTT+CGG | + | chr5.2:57685036-57685055 | None:intergenic | 10.0% |
| !! | ATCAATTAATTATTTGGTAT+TGG | - | chr5.2:57686518-57686537 | MS.gene61924:intron | 15.0% |
| !! | ATTTCAATTAATGATGAAAA+TGG | - | chr5.2:57687250-57687269 | MS.gene61924:intron | 15.0% |
| !! | CTTCTAATCAATTAATTATT+TGG | - | chr5.2:57686512-57686531 | MS.gene61924:intron | 15.0% |
| !! | TTATACTACAACTATTAATT+AGG | + | chr5.2:57685532-57685551 | None:intergenic | 15.0% |
| !!! | TATGTTTGATTTACTAATTA+GGG | - | chr5.2:57685568-57685587 | MS.gene61924:intron | 15.0% |
| !!! | TTATGTTTGATTTACTAATT+AGG | - | chr5.2:57685567-57685586 | MS.gene61924:intron | 15.0% |
| !! | AAAATCTGGAAAAAACTATA+AGG | + | chr5.2:57687461-57687480 | None:intergenic | 20.0% |
| !! | ATAGTTGTAGTATAAGAAAA+AGG | - | chr5.2:57685537-57685556 | MS.gene61924:intron | 20.0% |
| !! | CATATTATATATCACATGAT+TGG | + | chr5.2:57685068-57685087 | None:intergenic | 20.0% |
| !! | CTAATATATGTCTTGAAAAT+GGG | - | chr5.2:57687303-57687322 | MS.gene61924:intron | 20.0% |
| !! | GAAGAATTCAATTAAAATCA+AGG | + | chr5.2:57686803-57686822 | None:intergenic | 20.0% |
| !! | TAATATATGTCTTGAAAATG+GGG | - | chr5.2:57687304-57687323 | MS.gene61924:intron | 20.0% |
| !! | TATTAATTGTCAATTAGACT+GGG | - | chr5.2:57687371-57687390 | MS.gene61924:intron | 20.0% |
| !!! | AATCTTCTAAAGTAAATTCA+TGG | - | chr5.2:57685450-57685469 | MS.gene61924:intron | 20.0% |
| !!! | ATCTTCTAAAGTAAATTCAT+GGG | - | chr5.2:57685451-57685470 | MS.gene61924:intron | 20.0% |
| !!! | ATCTTTTATTGTTGTTGTTT+TGG | - | chr5.2:57687412-57687431 | MS.gene61924:intron | 20.0% |
| !!! | CATATTTCTATAAGCTTTTT+AGG | - | chr5.2:57686313-57686332 | MS.gene61924:intron | 20.0% |
| !!! | GATAGTATTTAAGATATGTT+TGG | - | chr5.2:57686255-57686274 | MS.gene61924:intron | 20.0% |
| !!! | TAATTAGGTTTTTTAACGTT+AGG | - | chr5.2:57686979-57686998 | MS.gene61924:CDS | 20.0% |
| !!! | TAGTTTTTTTTTTTGACAAG+CGG | + | chr5.2:57684976-57684995 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTACAGCCAA+AGG | + | chr5.2:57685105-57685124 | None:intergenic | 20.0% |
| ! | AACAAATTTGATGTAATGTC+AGG | - | chr5.2:57687101-57687120 | MS.gene61924:CDS | 25.0% |
| ! | AATAAAAATATATACAGCCG+CGG | - | chr5.2:57686829-57686848 | MS.gene61924:intron | 25.0% |
| ! | ATAATTTGATTGCTGAAGAT+GGG | + | chr5.2:57686642-57686661 | None:intergenic | 25.0% |
| ! | GCAAGTAAATAACTAAAAAG+TGG | + | chr5.2:57685875-57685894 | None:intergenic | 25.0% |
| ! | GCATGTATTTATTTGAATCT+TGG | - | chr5.2:57685486-57685505 | MS.gene61924:intron | 25.0% |
| ! | GCTAATATATGTCTTGAAAA+TGG | - | chr5.2:57687302-57687321 | MS.gene61924:intron | 25.0% |
| ! | GTAGTATAAGAAAAAGGAAT+TGG | - | chr5.2:57685543-57685562 | MS.gene61924:intron | 25.0% |
| ! | GTATTAATTGTCAATTAGAC+TGG | - | chr5.2:57687370-57687389 | MS.gene61924:intron | 25.0% |
| ! | TACGAATTCTCATGTATATA+AGG | + | chr5.2:57686408-57686427 | None:intergenic | 25.0% |
| ! | TCAATTAATGATGAAAATGG+AGG | - | chr5.2:57687253-57687272 | MS.gene61924:intron | 25.0% |
| ! | TTACTAAAAGATCTCTACAA+TGG | + | chr5.2:57684929-57684948 | None:intergenic | 25.0% |
| !! | TCTAGCTTGTAATTAAAATC+TGG | + | chr5.2:57687475-57687494 | None:intergenic | 25.0% |
| !!! | AAAGTTTGACTCTTTTTTGA+TGG | - | chr5.2:57685600-57685619 | MS.gene61924:intron | 25.0% |
| !!! | AAGTTTGACTCTTTTTTGAT+GGG | - | chr5.2:57685601-57685620 | MS.gene61924:intron | 25.0% |
| !!! | AATTCATGGGAATTTGTTTT+TGG | - | chr5.2:57685464-57685483 | MS.gene61924:intron | 25.0% |
| !!! | ACTTTATAGCTTTGTAAGTA+TGG | + | chr5.2:57686203-57686222 | None:intergenic | 25.0% |
| !!! | AGGAAGAAGTTTTTTATTTG+TGG | - | chr5.2:57687280-57687299 | MS.gene61924:intron | 25.0% |
| !!! | ATATTTTGGGTCATGTAATT+AGG | - | chr5.2:57684804-57684823 | MS.gene61924:intron | 25.0% |
| !!! | GTCTTAATCTTCTAGTTTAT+AGG | - | chr5.2:57687511-57687530 | MS.gene61924:intron | 25.0% |
| AAAAACACTATGATGTCTCT+AGG | - | chr5.2:57685125-57685144 | MS.gene61924:CDS | 30.0% | |
| AAATTATCATGCTCAAAACG+AGG | - | chr5.2:57686655-57686674 | MS.gene61924:intron | 30.0% | |
| ACCTTCTAACAATAACAAGT+GGG | + | chr5.2:57685966-57685985 | None:intergenic | 30.0% | |
| ACTCCCACATAAAAATTAGT+GGG | + | chr5.2:57685818-57685837 | None:intergenic | 30.0% | |
| ATCTACGTGAGACTAAAAAA+AGG | - | chr5.2:57685243-57685262 | MS.gene61924:intron | 30.0% | |
| ATTATAGGTCCAAATTGCTT+GGG | - | chr5.2:57685658-57685677 | MS.gene61924:intron | 30.0% | |
| GAACAACATGTAACAACTAA+TGG | - | chr5.2:57685338-57685357 | MS.gene61924:CDS | 30.0% | |
| GACTAGAGAAAACTACAATT+TGG | + | chr5.2:57686487-57686506 | None:intergenic | 30.0% | |
| GATAATTTGATTGCTGAAGA+TGG | + | chr5.2:57686643-57686662 | None:intergenic | 30.0% | |
| TAATTTGATTGCTGAAGATG+GGG | + | chr5.2:57686641-57686660 | None:intergenic | 30.0% | |
| TATTATAGGTCCAAATTGCT+TGG | - | chr5.2:57685657-57685676 | MS.gene61924:intron | 30.0% | |
| TCTACGTGAGACTAAAAAAA+GGG | - | chr5.2:57685244-57685263 | MS.gene61924:intron | 30.0% | |
| TTATAGCAACATACACCTTA+GGG | - | chr5.2:57685989-57686008 | MS.gene61924:intron | 30.0% | |
| TTTGTAAGTATGGATCTCTT+AGG | + | chr5.2:57686193-57686212 | None:intergenic | 30.0% | |
| ! | ACACCCACTAATTTTTATGT+GGG | - | chr5.2:57685812-57685831 | MS.gene61924:intron | 30.0% |
| !!! | CACTAGTTTTCGTGTATTAT+AGG | - | chr5.2:57685643-57685662 | MS.gene61924:intron | 30.0% |
| AAAGCTCCAATCAACCTTTA+AGG | - | chr5.2:57685687-57685706 | MS.gene61924:intron | 35.0% | |
| AAATATACCTGCGACCTTAA+AGG | + | chr5.2:57685704-57685723 | None:intergenic | 35.0% | |
| AAGATTCTCACGTCGAATAT+TGG | + | chr5.2:57686907-57686926 | None:intergenic | 35.0% | |
| AAGTGGTTAAATACACCCTA+AGG | + | chr5.2:57686007-57686026 | None:intergenic | 35.0% | |
| AAGTGGTTAATTACACCCTA+AGG | + | chr5.2:57685858-57685877 | None:intergenic | 35.0% | |
| ACATGAGTTGCATTAAAGAC+TGG | - | chr5.2:57687178-57687197 | MS.gene61924:intron | 35.0% | |
| ACTCCCACATAAAAACTAGT+GGG | - | chr5.2:57686050-57686069 | MS.gene61924:intron | 35.0% | |
| ACTCCCACATAAAAAGTAGT+GGG | - | chr5.2:57685901-57685920 | MS.gene61924:intron | 35.0% | |
| ATGCCCACTTTGCAATAAAA+GGG | - | chr5.2:57687221-57687240 | MS.gene61924:intron | 35.0% | |
| CACCTTCTAACAATAACAAG+TGG | + | chr5.2:57685967-57685986 | None:intergenic | 35.0% | |
| CACTCCCACATAAAAATTAG+TGG | + | chr5.2:57685819-57685838 | None:intergenic | 35.0% | |
| CATCTTCCACAACCAATTAA+TGG | - | chr5.2:57686596-57686615 | MS.gene61924:intron | 35.0% | |
| CATTAATTGGTTGTGGAAGA+TGG | + | chr5.2:57686598-57686617 | None:intergenic | 35.0% | |
| GAAACTACTAAGATTCCAGT+TGG | - | chr5.2:57685305-57685324 | MS.gene61924:intron | 35.0% | |
| GAGAGAAACAATGGAGTATA+TGG | - | chr5.2:57685403-57685422 | MS.gene61924:CDS | 35.0% | |
| GATCATCTTCAAATAGCTCT+GGG | + | chr5.2:57685211-57685230 | None:intergenic | 35.0% | |
| GGGTCATGTAATTAGGTTTA+TGG | - | chr5.2:57684811-57684830 | MS.gene61924:intron | 35.0% | |
| GTTATAGCAACATACACCTT+AGG | - | chr5.2:57685988-57686007 | MS.gene61924:intron | 35.0% | |
| TATGCCCACTTTGCAATAAA+AGG | - | chr5.2:57687220-57687239 | MS.gene61924:intron | 35.0% | |
| TCACGTAGATATTGAAAGAC+TGG | + | chr5.2:57685233-57685252 | None:intergenic | 35.0% | |
| TCCTAAAGTGAGAGAAACAA+TGG | - | chr5.2:57685394-57685413 | MS.gene61924:CDS | 35.0% | |
| TCTCTACAATGGCATTGTAA+CGG | + | chr5.2:57684918-57684937 | None:intergenic | 35.0% | |
| TGCTTGCATTGTTAATCCTT+TGG | - | chr5.2:57685086-57685105 | MS.gene61924:CDS | 35.0% | |
| TGGTGAAGAAATTGAAAGAC+TGG | - | chr5.2:57687137-57687156 | MS.gene61924:CDS | 35.0% | |
| TGTGTTCTAGCAAATCCTAT+AGG | + | chr5.2:57685943-57685962 | None:intergenic | 35.0% | |
| TTATAGGTCCAAATTGCTTG+GGG | - | chr5.2:57685659-57685678 | MS.gene61924:intron | 35.0% | |
| TTTAGCAAAGCTACACCTTA+GGG | - | chr5.2:57685840-57685859 | MS.gene61924:intron | 35.0% | |
| TTTGGACCATTAATTGGTTG+TGG | + | chr5.2:57686605-57686624 | None:intergenic | 35.0% | |
| ! | ATCCCCTTTTATTGCAAAGT+GGG | + | chr5.2:57687227-57687246 | None:intergenic | 35.0% |
| ! | CACACCCACTAATTTTTATG+TGG | - | chr5.2:57685811-57685830 | MS.gene61924:intron | 35.0% |
| ! | CAGCATGATTGTGTATTTTC+GGG | + | chr5.2:57686948-57686967 | None:intergenic | 35.0% |
| ! | GCAGCATGATTGTGTATTTT+CGG | + | chr5.2:57686949-57686968 | None:intergenic | 35.0% |
| ! | TATCCCCTTTTATTGCAAAG+TGG | + | chr5.2:57687228-57687247 | None:intergenic | 35.0% |
| ! | TCCATTGTTTCTCTCACTTT+AGG | + | chr5.2:57685398-57685417 | None:intergenic | 35.0% |
| ! | TTTTAGCAAAGCTACACCTT+AGG | - | chr5.2:57685839-57685858 | MS.gene61924:intron | 35.0% |
| !! | ACCCACTTGTTATTGTTAGA+AGG | - | chr5.2:57685962-57685981 | MS.gene61924:intron | 35.0% |
| !!! | ACACCCACTACTTTTTATGT+GGG | + | chr5.2:57685907-57685926 | None:intergenic | 35.0% |
| !!! | ACACCCACTAGTTTTTATGT+GGG | + | chr5.2:57686056-57686075 | None:intergenic | 35.0% |
| AAAAATATATACAGCCGCGG+TGG | - | chr5.2:57686832-57686851 | MS.gene61924:intron | 40.0% | |
| ACAATCATGCTGCATTTGTC+TGG | - | chr5.2:57686956-57686975 | MS.gene61924:CDS | 40.0% | |
| ACGTGAGAATCTTGAATTCG+GGG | - | chr5.2:57686914-57686933 | MS.gene61924:CDS | 40.0% | |
| ATGATGAAAATGGAGGCTGA+AGG | - | chr5.2:57687260-57687279 | MS.gene61924:intron | 40.0% | |
| ATGTCTCTAGGTCAAACTGA+AGG | - | chr5.2:57685137-57685156 | MS.gene61924:CDS | 40.0% | |
| CACTCCCACATAAAAACTAG+TGG | - | chr5.2:57686049-57686068 | MS.gene61924:intron | 40.0% | |
| CACTCCCACATAAAAAGTAG+TGG | - | chr5.2:57685900-57685919 | MS.gene61924:intron | 40.0% | |
| CGACGTGAGAATCTTGAATT+CGG | - | chr5.2:57686912-57686931 | MS.gene61924:CDS | 40.0% | |
| CTTCAAGCAACTTCCAAAGT+AGG | - | chr5.2:57685168-57685187 | MS.gene61924:intron | 40.0% | |
| GACGTGAGAATCTTGAATTC+GGG | - | chr5.2:57686913-57686932 | MS.gene61924:CDS | 40.0% | |
| GCTGCATTTGTCTGGTAATT+AGG | - | chr5.2:57686964-57686983 | MS.gene61924:CDS | 40.0% | |
| GGATCATCTTCAAATAGCTC+TGG | + | chr5.2:57685212-57685231 | None:intergenic | 40.0% | |
| GGCATACATTCTTAACAGCT+AGG | + | chr5.2:57687206-57687225 | None:intergenic | 40.0% | |
| GTGTTCTAGCAAATGCCTAT+AGG | - | chr5.2:57685925-57685944 | MS.gene61924:intron | 40.0% | |
| TGCCCACTTTGCAATAAAAG+GGG | - | chr5.2:57687222-57687241 | MS.gene61924:intron | 40.0% | |
| TGTTCAACAATCTGACCAAC+TGG | + | chr5.2:57685323-57685342 | None:intergenic | 40.0% | |
| TTCGATCCTGAAAAACTCGT+TGG | + | chr5.2:57686544-57686563 | None:intergenic | 40.0% | |
| ! | AGACTGGGAAGTCTTTTCTT+TGG | - | chr5.2:57687386-57687405 | MS.gene61924:intron | 40.0% |
| ! | GACTGGGAAGTCTTTTCTTT+GGG | - | chr5.2:57687387-57687406 | MS.gene61924:intron | 40.0% |
| ! | TATTGGCCAACGAGTTTTTC+AGG | - | chr5.2:57686535-57686554 | MS.gene61924:intron | 40.0% |
| ! | TGTCAGGAAAATTTTGCTGC+TGG | - | chr5.2:57687117-57687136 | MS.gene61924:CDS | 40.0% |
| !! | GGTTGGTTTGGACCATTAAT+TGG | + | chr5.2:57686611-57686630 | None:intergenic | 40.0% |
| !! | GTTTCTCTCACTTTAGGATC+AGG | + | chr5.2:57685392-57685411 | None:intergenic | 40.0% |
| !!! | CACACCCACTACTTTTTATG+TGG | + | chr5.2:57685908-57685927 | None:intergenic | 40.0% |
| !!! | CACACCCACTAGTTTTTATG+TGG | + | chr5.2:57686057-57686076 | None:intergenic | 40.0% |
| CTTCTACATTGCGTATCCAC+CGG | + | chr5.2:57686875-57686894 | None:intergenic | 45.0% | |
| TTGTGGAAGATGGCGTAACA+CGG | + | chr5.2:57686588-57686607 | None:intergenic | 45.0% | |
| TTTGACGTCCCCAAGCAATT+TGG | + | chr5.2:57685670-57685689 | None:intergenic | 45.0% | |
| ! | CTGCGACCTTAAAGGTTGAT+TGG | + | chr5.2:57685696-57685715 | None:intergenic | 45.0% |
| !! | AATAGCTCTGGGTACATAGC+TGG | + | chr5.2:57685200-57685219 | None:intergenic | 45.0% |
| !! | CAATCAACCTTTAAGGTCGC+AGG | - | chr5.2:57685694-57685713 | MS.gene61924:intron | 45.0% |
| !! | TATATATATATATATATATG+GGG | + | chr5.2:57685798-57685779 | None:intergenic | 5.0% |
| !!! | ATTAATACATTTATTTTTTA+AGG | + | chr5.2:57687358-57687377 | None:intergenic | 5.0% |
| !!! | TTTTTTAATTGTAATATTTT+GGG | - | chr5.2:57684791-57684810 | MS.gene61924:intron | 5.0% |
| !!! | TTTTTTTAATTGTAATATTT+TGG | - | chr5.2:57684790-57684809 | MS.gene61924:intron | 5.0% |
| GAAGATGGGGTAACACAGGT+TGG | + | chr5.2:57686628-57686647 | None:intergenic | 50.0% | |
| GATGGCGTAACACGGCATTA+TGG | + | chr5.2:57686580-57686599 | None:intergenic | 50.0% | |
| GGATGCAGAAGCTTACCAAC+CGG | - | chr5.2:57686853-57686872 | MS.gene61924:intron | 50.0% | |
| TACATTGCGTATCCACCGGT+TGG | + | chr5.2:57686871-57686890 | None:intergenic | 50.0% | |
| TAGCTGGTAGGTGCCTACTT+TGG | + | chr5.2:57685184-57685203 | None:intergenic | 50.0% | |
| TGCTGAAGATGGGGTAACAC+AGG | + | chr5.2:57686632-57686651 | None:intergenic | 50.0% | |
| !! | TGGGGTAACACAGGTTGGTT+TGG | + | chr5.2:57686623-57686642 | None:intergenic | 50.0% |
| GTAAGCTTCTGCATCCACCG+CGG | + | chr5.2:57686849-57686868 | None:intergenic | 55.0% | |
| TGCAGAAGCTTACCAACCGG+TGG | - | chr5.2:57686856-57686875 | MS.gene61924:intron | 55.0% | |
| ! | GCTCTGGGTACATAGCTGGT+AGG | + | chr5.2:57685196-57685215 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 57684764 | 57687540 | 57684764 | ID=MS.gene61924 |
| chr5.2 | mRNA | 57684764 | 57687540 | 57684764 | ID=MS.gene61924.t1;Parent=MS.gene61924 |
| chr5.2 | exon | 57687528 | 57687540 | 57687528 | ID=MS.gene61924.t1.exon1;Parent=MS.gene61924.t1 |
| chr5.2 | CDS | 57687528 | 57687540 | 57687528 | ID=cds.MS.gene61924.t1;Parent=MS.gene61924.t1 |
| chr5.2 | exon | 57686880 | 57687157 | 57686880 | ID=MS.gene61924.t1.exon2;Parent=MS.gene61924.t1 |
| chr5.2 | CDS | 57686880 | 57687157 | 57686880 | ID=cds.MS.gene61924.t1;Parent=MS.gene61924.t1 |
| chr5.2 | exon | 57685327 | 57685443 | 57685327 | ID=MS.gene61924.t1.exon3;Parent=MS.gene61924.t1 |
| chr5.2 | CDS | 57685327 | 57685443 | 57685327 | ID=cds.MS.gene61924.t1;Parent=MS.gene61924.t1 |
| chr5.2 | exon | 57685086 | 57685181 | 57685086 | ID=MS.gene61924.t1.exon4;Parent=MS.gene61924.t1 |
| chr5.2 | CDS | 57685086 | 57685181 | 57685086 | ID=cds.MS.gene61924.t1;Parent=MS.gene61924.t1 |
| chr5.2 | exon | 57684764 | 57684778 | 57684764 | ID=MS.gene61924.t1.exon5;Parent=MS.gene61924.t1 |
| chr5.2 | CDS | 57684764 | 57684778 | 57684764 | ID=cds.MS.gene61924.t1;Parent=MS.gene61924.t1 |
| Gene Sequence |
| Protein sequence |
