Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62396.t1 | RHN63957.1 | 95.8 | 191 | 6 | 1 | 1 | 189 | 1 | 191 | 3.40E-99 | 370.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62396.t1 | Q8GW46 | 75.8 | 165 | 34 | 2 | 8 | 172 | 5 | 163 | 8.1e-65 | 248.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62396.t1 | A0A396IM32 | 95.8 | 191 | 6 | 1 | 1 | 189 | 1 | 191 | 2.5e-99 | 370.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene62396.t1 | TF | C2C2-YABBY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049907 | MS.gene62396 | 0.818561 | 1.84E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene62396 | 0.835071 | 2.08E-56 | -1.69E-46 |
| MS.gene050581 | MS.gene62396 | 0.837225 | 5.89E-57 | -1.69E-46 |
| MS.gene053813 | MS.gene62396 | 0.808485 | 3.03E-50 | -1.69E-46 |
| MS.gene056611 | MS.gene62396 | 0.810428 | 1.16E-50 | -1.69E-46 |
| MS.gene058459 | MS.gene62396 | 0.824995 | 5.97E-54 | -1.69E-46 |
| MS.gene058903 | MS.gene62396 | 0.842489 | 2.51E-58 | -1.69E-46 |
| MS.gene059294 | MS.gene62396 | 0.81532 | 9.82E-52 | -1.69E-46 |
| MS.gene059974 | MS.gene62396 | 0.849685 | 2.76E-60 | -1.69E-46 |
| MS.gene060005 | MS.gene62396 | 0.868269 | 7.40E-66 | -1.69E-46 |
| MS.gene060799 | MS.gene62396 | 0.968768 | 3.78E-129 | -1.69E-46 |
| MS.gene060800 | MS.gene62396 | 0.978976 | 5.76E-147 | -1.69E-46 |
| MS.gene060801 | MS.gene62396 | 0.985922 | 4.26E-165 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62396.t1 | MTR_4g114730 | 95.288 | 191 | 7 | 1 | 1 | 189 | 1 | 191 | 5.41e-136 | 378 |
| MS.gene62396.t1 | MTR_2g087740 | 56.667 | 180 | 67 | 4 | 5 | 173 | 2 | 181 | 4.45e-60 | 186 |
| MS.gene62396.t1 | MTR_4g025900 | 53.403 | 191 | 63 | 4 | 14 | 184 | 25 | 209 | 2.64e-54 | 172 |
| MS.gene62396.t1 | MTR_4g050300 | 56.000 | 175 | 61 | 6 | 5 | 173 | 2 | 166 | 1.27e-52 | 166 |
| MS.gene62396.t1 | MTR_4g101660 | 54.971 | 171 | 59 | 4 | 8 | 163 | 14 | 181 | 2.31e-50 | 162 |
| MS.gene62396.t1 | MTR_5g034030 | 49.686 | 159 | 58 | 4 | 12 | 156 | 12 | 162 | 5.58e-45 | 148 |
| MS.gene62396.t1 | MTR_5g046230 | 41.875 | 160 | 72 | 3 | 5 | 155 | 8 | 155 | 1.10e-33 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62396.t1 | AT2G26580 | 75.301 | 166 | 35 | 2 | 7 | 172 | 4 | 163 | 6.88e-88 | 255 |
| MS.gene62396.t1 | AT2G26580 | 75.301 | 166 | 35 | 2 | 7 | 172 | 4 | 163 | 6.88e-88 | 255 |
| MS.gene62396.t1 | AT1G08465 | 53.631 | 179 | 60 | 5 | 5 | 171 | 2 | 169 | 5.25e-56 | 175 |
| MS.gene62396.t1 | AT2G45190 | 54.802 | 177 | 63 | 6 | 4 | 163 | 14 | 190 | 2.23e-54 | 172 |
| MS.gene62396.t1 | AT4G00180 | 50.811 | 185 | 57 | 4 | 12 | 165 | 23 | 204 | 1.41e-47 | 155 |
| MS.gene62396.t1 | AT4G00180 | 48.864 | 176 | 56 | 4 | 21 | 165 | 1 | 173 | 2.75e-39 | 133 |
| MS.gene62396.t1 | AT1G23420 | 47.205 | 161 | 71 | 3 | 13 | 159 | 20 | 180 | 1.01e-38 | 132 |
| MS.gene62396.t1 | AT1G23420 | 47.205 | 161 | 71 | 3 | 13 | 159 | 51 | 211 | 2.96e-38 | 132 |
| MS.gene62396.t1 | AT2G45190 | 92.982 | 57 | 4 | 0 | 107 | 163 | 70 | 126 | 4.29e-34 | 119 |
| MS.gene62396.t1 | AT1G69180 | 42.069 | 145 | 78 | 2 | 11 | 155 | 18 | 156 | 3.92e-32 | 114 |
Find 38 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATCCTATCGTTGCATT+TGG | 0.296610 | 8.2:-13921889 | None:intergenic |
| GCTTCTCTGTGACTGATATC+AGG | 0.363234 | 8.2:-13922405 | None:intergenic |
| GCAATCCTATCGTTGCATTT+GGG | 0.399881 | 8.2:-13921888 | None:intergenic |
| ACTGTCATGGCAAGATGTTC+AGG | 0.423195 | 8.2:+13920854 | MS.gene62396:CDS |
| GTGGTCACTGCACAAATCTA+TGG | 0.424333 | 8.2:+13920802 | MS.gene62396:CDS |
| AGGTACACGTTGCCTCTTCT+CGG | 0.458670 | 8.2:-13922210 | None:intergenic |
| ATCAGCCCAAAATGAATATG+AGG | 0.476928 | 8.2:-13922546 | None:intergenic |
| CACCCATGTTACTGAGGAAA+GGG | 0.483814 | 8.2:+13921929 | MS.gene62396:CDS |
| GAGCAACAATCAAGCTAAGA+TGG | 0.499438 | 8.2:+13922575 | MS.gene62396:CDS |
| TCCTCAGTAACATGGGTGGT+TGG | 0.501150 | 8.2:-13921924 | None:intergenic |
| ACTGCATGAATCCAGAGTAT+AGG | 0.501971 | 8.2:+13921847 | MS.gene62396:CDS |
| GGTACACGTTGCCTCTTCTC+GGG | 0.503039 | 8.2:-13922209 | None:intergenic |
| CAACCCTTTCCTCAGTAACA+TGG | 0.504380 | 8.2:-13921932 | None:intergenic |
| TGAGAAGCGTTTGATGTCTA+CGG | 0.515736 | 8.2:+13922706 | MS.gene62396:CDS |
| ATGTAGCAGAGTTGTTCAGC+AGG | 0.519727 | 8.2:-13919695 | None:intergenic |
| CCTATCGTTGCATTTGGGAG+TGG | 0.533061 | 8.2:-13921883 | None:intergenic |
| ACAATATTGCAAAAGTTGCA+AGG | 0.540036 | 8.2:-13919719 | None:intergenic |
| AATTTCCAGCTCCCGAGAAG+AGG | 0.540719 | 8.2:+13922198 | MS.gene62396:intron |
| AAATCTATGGTCTGTAAACA+TGG | 0.552321 | 8.2:+13920815 | MS.gene62396:CDS |
| CCGCGTTTCAGTCACTGTCA+TGG | 0.556178 | 8.2:+13920841 | MS.gene62396:CDS |
| TCTGGATTCATGCAGTGGCT+AGG | 0.562771 | 8.2:-13921840 | None:intergenic |
| CTAGTTCGAATCCTATACTC+TGG | 0.567724 | 8.2:-13921858 | None:intergenic |
| GGAAGAGATTCAGAGGATCA+AGG | 0.576711 | 8.2:+13922374 | MS.gene62396:CDS |
| CAATATTGCAAAAGTTGCAA+GGG | 0.579397 | 8.2:-13919718 | None:intergenic |
| CCACCCATGTTACTGAGGAA+AGG | 0.581614 | 8.2:+13921928 | MS.gene62396:CDS |
| ATGAACTGATTATAAGCAGA+AGG | 0.586762 | 8.2:-13922230 | None:intergenic |
| CCACTCCCAAATGCAACGAT+AGG | 0.592244 | 8.2:+13921883 | MS.gene62396:CDS |
| AGACATGTCTAGCTGTAGCA+TGG | 0.594915 | 8.2:+13919664 | None:intergenic |
| ATTTCAAACAAGCTACTGCA+TGG | 0.595371 | 8.2:-13920765 | None:intergenic |
| TATGCAGGGAAGAGATTCAG+AGG | 0.621557 | 8.2:+13922367 | MS.gene62396:intron |
| AACCCTTTCCTCAGTAACAT+GGG | 0.626838 | 8.2:-13921931 | None:intergenic |
| TATACTCTGGATTCATGCAG+TGG | 0.629931 | 8.2:-13921845 | None:intergenic |
| TGTGCAGTGACCACATCGAA+CGG | 0.632060 | 8.2:-13920793 | None:intergenic |
| ACCAACCACCCATGTTACTG+AGG | 0.669098 | 8.2:+13921923 | MS.gene62396:CDS |
| GAAATAGTGACCGTTCGATG+TGG | 0.670282 | 8.2:+13920783 | MS.gene62396:CDS |
| CCTTTCCTCAGTAACATGGG+TGG | 0.674444 | 8.2:-13921928 | None:intergenic |
| CCATGACAGTGACTGAAACG+CGG | 0.691630 | 8.2:-13920841 | None:intergenic |
| TGACAGTGACTGAAACGCGG+CGG | 0.753574 | 8.2:-13920838 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGATTGAAAAATTAAAT+TGG | - | chr8.2:13922623-13922642 | None:intergenic | 10.0% |
| !! | TTTATATTTATATATATGCA+GGG | + | chr8.2:13922353-13922372 | MS.gene62396:intron | 10.0% |
| !!! | ATTATTTCTTTATTTTTTAG+TGG | + | chr8.2:13922514-13922533 | MS.gene62396:intron | 10.0% |
| !!! | GATTTTTTTTTTTTTTTTGT+GGG | + | chr8.2:13920575-13920594 | MS.gene62396:intron | 10.0% |
| !!! | TGATTATTTTTATTATATTC+AGG | + | chr8.2:13922679-13922698 | MS.gene62396:intron | 10.0% |
| !!! | TTATTTCTTTATTTTTTAGT+GGG | + | chr8.2:13922515-13922534 | MS.gene62396:intron | 10.0% |
| !!! | TTTTATATTTATATATATGC+AGG | + | chr8.2:13922352-13922371 | MS.gene62396:intron | 10.0% |
| !! | TAAACAAGAGAAAATTAATT+AGG | - | chr8.2:13920437-13920456 | None:intergenic | 15.0% |
| !! | TTTAAATAGATAGGAAAAAA+AGG | - | chr8.2:13921994-13922013 | None:intergenic | 15.0% |
| !!! | GGATTTTTTTTTTTTTTTTG+TGG | + | chr8.2:13920574-13920593 | MS.gene62396:intron | 15.0% |
| !!! | TTTTTATTTTAATTGCAAGA+AGG | + | chr8.2:13919846-13919865 | MS.gene62396:intron | 15.0% |
| !! | AATTTAGAAAATAAACTACG+TGG | - | chr8.2:13922096-13922115 | None:intergenic | 20.0% |
| !! | ATAATTAATTACTACTAGCT+AGG | - | chr8.2:13921375-13921394 | None:intergenic | 20.0% |
| !! | ATCAATGAAACAATAAAGTA+AGG | - | chr8.2:13921808-13921827 | None:intergenic | 20.0% |
| !! | TAATTAATTACTACTAGCTA+GGG | - | chr8.2:13921374-13921393 | None:intergenic | 20.0% |
| !! | TGTTTAAACTTAAACATACA+AGG | + | chr8.2:13920451-13920470 | MS.gene62396:intron | 20.0% |
| !!! | AGTTTTGATGATAAACATAA+TGG | + | chr8.2:13920292-13920311 | MS.gene62396:intron | 20.0% |
| !!! | ATATACTTGATAGTTTTCTT+TGG | + | chr8.2:13919892-13919911 | MS.gene62396:intron | 20.0% |
| !!! | ATATTTTAATTCTCTCTTTC+TGG | + | chr8.2:13920047-13920066 | MS.gene62396:intron | 20.0% |
| !!! | ATTTTCCTCATATTCATTTT+GGG | + | chr8.2:13922541-13922560 | MS.gene62396:CDS | 20.0% |
| !!! | GTATATATAGTTGATTCAAT+TGG | + | chr8.2:13922292-13922311 | MS.gene62396:intron | 20.0% |
| !!! | TATCATTTAGTGATTTGTTT+TGG | - | chr8.2:13920337-13920356 | None:intergenic | 20.0% |
| !!! | TATTTTAATTCTCTCTTTCT+GGG | + | chr8.2:13920048-13920067 | MS.gene62396:intron | 20.0% |
| ! | AAAACTCCTTATAGTTTACT+TGG | + | chr8.2:13919770-13919789 | MS.gene62396:intron | 25.0% |
| ! | AATTAATTACTACTAGCTAG+GGG | - | chr8.2:13921373-13921392 | None:intergenic | 25.0% |
| ! | AGTCTATGAAAAAGGAAAAT+AGG | - | chr8.2:13921178-13921197 | None:intergenic | 25.0% |
| ! | ATGAAACAATAAAGTAAGGA+AGG | - | chr8.2:13921804-13921823 | None:intergenic | 25.0% |
| ! | GCTAGTTAGTAATTAATCAA+AGG | + | chr8.2:13920714-13920733 | MS.gene62396:intron | 25.0% |
| ! | TAGGAAAAGTTCATATATCT+AGG | + | chr8.2:13921305-13921324 | MS.gene62396:intron | 25.0% |
| ! | TGAATGAATTCCTTTATACT+TGG | - | chr8.2:13919960-13919979 | None:intergenic | 25.0% |
| !! | AAAACATTTTCAGTATGGTT+TGG | - | chr8.2:13921228-13921247 | None:intergenic | 25.0% |
| !! | AAAATCGAAGTATCTTAGTT+AGG | + | chr8.2:13921034-13921053 | MS.gene62396:intron | 25.0% |
| !! | CATTTTCCTCATATTCATTT+TGG | + | chr8.2:13922540-13922559 | MS.gene62396:CDS | 25.0% |
| !! | TAAGCAAAACATTTTCAGTA+TGG | - | chr8.2:13921233-13921252 | None:intergenic | 25.0% |
| !! | TAGTATTTCTATGTTCGTTA+AGG | - | chr8.2:13922128-13922147 | None:intergenic | 25.0% |
| !!! | AAATAGGTTTGTTTTTATGG+CGG | - | chr8.2:13921162-13921181 | None:intergenic | 25.0% |
| !!! | ATTCTTTATTTTCTACCTCT+TGG | + | chr8.2:13920400-13920419 | MS.gene62396:intron | 25.0% |
| !!! | GGAAAATAGGTTTGTTTTTA+TGG | - | chr8.2:13921165-13921184 | None:intergenic | 25.0% |
| !!! | TTGTTTCATTGATTTTCTTC+AGG | + | chr8.2:13921815-13921834 | MS.gene62396:intron | 25.0% |
| AAAACAAGGCATATAGAGAA+AGG | + | chr8.2:13920221-13920240 | MS.gene62396:intron | 30.0% | |
| AAAATAGATCTATCCTAGCT+AGG | + | chr8.2:13920951-13920970 | MS.gene62396:intron | 30.0% | |
| AAACAAGGCATATAGAGAAA+GGG | + | chr8.2:13920222-13920241 | MS.gene62396:intron | 30.0% | |
| AAATCTATGGTCTGTAAACA+TGG | + | chr8.2:13920815-13920834 | MS.gene62396:CDS | 30.0% | |
| AATTCATTCAGATCCTGAAA+AGG | + | chr8.2:13919970-13919989 | MS.gene62396:intron | 30.0% | |
| ACAATATTGCAAAAGTTGCA+AGG | - | chr8.2:13919722-13919741 | None:intergenic | 30.0% | |
| ACAGTTCTTTCTTGTTAAGT+TGG | - | chr8.2:13921753-13921772 | None:intergenic | 30.0% | |
| ATATATATGTAGCATGCAAG+AGG | - | chr8.2:13919809-13919828 | None:intergenic | 30.0% | |
| ATGAACTGATTATAAGCAGA+AGG | - | chr8.2:13922233-13922252 | None:intergenic | 30.0% | |
| ATTAATTACTACTAGCTAGG+GGG | - | chr8.2:13921372-13921391 | None:intergenic | 30.0% | |
| CAATATTGCAAAAGTTGCAA+GGG | - | chr8.2:13919721-13919740 | None:intergenic | 30.0% | |
| CTTTCTTTCAAGCTAAAACA+AGG | + | chr8.2:13920207-13920226 | MS.gene62396:intron | 30.0% | |
| GAAAGAAAGAGAAAGAGAAA+GGG | - | chr8.2:13920196-13920215 | None:intergenic | 30.0% | |
| GTGTACATATCCAAGTATAA+AGG | + | chr8.2:13919947-13919966 | MS.gene62396:intron | 30.0% | |
| TAAAGAATAGAGAAGAAGAG+AGG | - | chr8.2:13920388-13920407 | None:intergenic | 30.0% | |
| TCAGATCCAAGTAAACTATA+AGG | - | chr8.2:13919779-13919798 | None:intergenic | 30.0% | |
| TGAAAGAAAGAGAAAGAGAA+AGG | - | chr8.2:13920197-13920216 | None:intergenic | 30.0% | |
| ! | ATCACATTTCACACTTGTTA+TGG | - | chr8.2:13920552-13920571 | None:intergenic | 30.0% |
| ! | ATTTGATAACCTTGATGAGA+GGG | - | chr8.2:13920147-13920166 | None:intergenic | 30.0% |
| ! | CTTTTGCAATATTGTTCTTG+CGG | + | chr8.2:13919727-13919746 | MS.gene62396:CDS | 30.0% |
| ! | GAGAGTATATAGTAAACTCA+CGG | - | chr8.2:13921965-13921984 | None:intergenic | 30.0% |
| ! | TATTTGATAACCTTGATGAG+AGG | - | chr8.2:13920148-13920167 | None:intergenic | 30.0% |
| ! | TCTTTGAAAAAGAGTTGAGA+AGG | - | chr8.2:13920502-13920521 | None:intergenic | 30.0% |
| !! | CTTGTTAAGTTGGAAATACT+AGG | - | chr8.2:13921743-13921762 | None:intergenic | 30.0% |
| !! | TCACATTTCACACTTGTTAT+GGG | - | chr8.2:13920551-13920570 | None:intergenic | 30.0% |
| !! | TGATAGTTTTCTTTGGTCTT+TGG | + | chr8.2:13919899-13919918 | MS.gene62396:intron | 30.0% |
| !!! | AATCCTCATTTTTCAAGATC+AGG | + | chr8.2:13920524-13920543 | MS.gene62396:intron | 30.0% |
| AACAAGTGTGAAATGTGATG+TGG | + | chr8.2:13920553-13920572 | MS.gene62396:intron | 35.0% | |
| ACACACACACAAAAAGTCAA+CGG | - | chr8.2:13920636-13920655 | None:intergenic | 35.0% | |
| ACAGTTGTTGGTATGAATGA+AGG | - | chr8.2:13921569-13921588 | None:intergenic | 35.0% | |
| AGTATATAGTAAACTCACGG+CGG | - | chr8.2:13921962-13921981 | None:intergenic | 35.0% | |
| ATCAATGCTTTGTACAGAGA+TGG | - | chr8.2:13921690-13921709 | None:intergenic | 35.0% | |
| ATCAGCCCAAAATGAATATG+AGG | - | chr8.2:13922549-13922568 | None:intergenic | 35.0% | |
| ATTTCAAACAAGCTACTGCA+TGG | - | chr8.2:13920768-13920787 | None:intergenic | 35.0% | |
| CATACCAACAACTGTCAATT+GGG | + | chr8.2:13921574-13921593 | MS.gene62396:intron | 35.0% | |
| TAAACTACGTGGCTATGATA+TGG | - | chr8.2:13922085-13922104 | None:intergenic | 35.0% | |
| TCATACCAACAACTGTCAAT+TGG | + | chr8.2:13921573-13921592 | MS.gene62396:intron | 35.0% | |
| TTCTGACGAGTCTATGAAAA+AGG | - | chr8.2:13921186-13921205 | None:intergenic | 35.0% | |
| TTGAAAAAGAGTTGAGAAGG+TGG | - | chr8.2:13920499-13920518 | None:intergenic | 35.0% | |
| ! | AAAGACTTTTGCCTTTGCTT+TGG | + | chr8.2:13921254-13921273 | MS.gene62396:intron | 35.0% |
| ! | AAGACTTTTGCCTTTGCTTT+GGG | + | chr8.2:13921255-13921274 | MS.gene62396:intron | 35.0% |
| ! | ACACATCAAATCAGTTCTGA+AGG | - | chr8.2:13921286-13921305 | None:intergenic | 35.0% |
| ! | TATTCATTTTGGGCTGATGT+TGG | + | chr8.2:13922551-13922570 | MS.gene62396:CDS | 35.0% |
| !! | ATTTTCAGTATGGTTTGGCT+TGG | - | chr8.2:13921223-13921242 | None:intergenic | 35.0% |
| !! | TCAGAACTGATTTGATGTGT+AGG | + | chr8.2:13921286-13921305 | MS.gene62396:intron | 35.0% |
| !!! | ATTTTTGGTGTAGATCCCTA+AGG | + | chr8.2:13921543-13921562 | MS.gene62396:intron | 35.0% |
| AAAGTCATACCCTCTCATCA+AGG | + | chr8.2:13920135-13920154 | MS.gene62396:intron | 40.0% | |
| AACCCTTTCCTCAGTAACAT+GGG | - | chr8.2:13921934-13921953 | None:intergenic | 40.0% | |
| AATACACACACACACTCACA+TGG | + | chr8.2:13920164-13920183 | MS.gene62396:intron | 40.0% | |
| ACTGCATGAATCCAGAGTAT+AGG | + | chr8.2:13921847-13921866 | MS.gene62396:CDS | 40.0% | |
| ATCAAAACTAGCAAGCTCAG+TGG | - | chr8.2:13920281-13920300 | None:intergenic | 40.0% | |
| CTAGTTCGAATCCTATACTC+TGG | - | chr8.2:13921861-13921880 | None:intergenic | 40.0% | |
| GAAATCAAAGAAGCCTAGCT+AGG | - | chr8.2:13920967-13920986 | None:intergenic | 40.0% | |
| GAAGGTAATACCCAAAGCAA+AGG | - | chr8.2:13921268-13921287 | None:intergenic | 40.0% | |
| GACTGCAAAAGAAAAGTCCA+GGG | - | chr8.2:13920109-13920128 | None:intergenic | 40.0% | |
| GAGCAACAATCAAGCTAAGA+TGG | + | chr8.2:13922575-13922594 | MS.gene62396:CDS | 40.0% | |
| GCAATCCTATCGTTGCATTT+GGG | - | chr8.2:13921891-13921910 | None:intergenic | 40.0% | |
| GGACCTGATCTTGAAAAATG+AGG | - | chr8.2:13920530-13920549 | None:intergenic | 40.0% | |
| TAGGTCATATAGTAGCCAAG+AGG | - | chr8.2:13920418-13920437 | None:intergenic | 40.0% | |
| TATACTCTGGATTCATGCAG+TGG | - | chr8.2:13921848-13921867 | None:intergenic | 40.0% | |
| TGACTGCAAAAGAAAAGTCC+AGG | - | chr8.2:13920110-13920129 | None:intergenic | 40.0% | |
| TGAGAAGGTGGAATGATCAA+GGG | - | chr8.2:13920487-13920506 | None:intergenic | 40.0% | |
| TGCAATCCTATCGTTGCATT+TGG | - | chr8.2:13921892-13921911 | None:intergenic | 40.0% | |
| TGGTATGAATGAAGGCCTTA+GGG | - | chr8.2:13921561-13921580 | None:intergenic | 40.0% | |
| TTGAGAAGGTGGAATGATCA+AGG | - | chr8.2:13920488-13920507 | None:intergenic | 40.0% | |
| TTGGTATGAATGAAGGCCTT+AGG | - | chr8.2:13921562-13921581 | None:intergenic | 40.0% | |
| ! | AGCTAGGCTTCTTTGATTTC+TGG | + | chr8.2:13920967-13920986 | MS.gene62396:intron | 40.0% |
| ! | ATTTTCCAGAAACCCTAGCT+AGG | - | chr8.2:13921000-13921019 | None:intergenic | 40.0% |
| ! | CACAACATGCTTTCCTTTTC+AGG | - | chr8.2:13919986-13920005 | None:intergenic | 40.0% |
| ! | TTTTATGGCGGCTTACTTAC+AGG | - | chr8.2:13921150-13921169 | None:intergenic | 40.0% |
| !! | AGGTTGATTTGACTTGATGC+AGG | + | chr8.2:13920734-13920753 | MS.gene62396:intron | 40.0% |
| !! | TGAGAAGCGTTTGATGTCTA+CGG | + | chr8.2:13922706-13922725 | MS.gene62396:CDS | 40.0% |
| ACTGTCATGGCAAGATGTTC+AGG | + | chr8.2:13920854-13920873 | MS.gene62396:CDS | 45.0% | |
| AGAAAGGGAGGACAAAGTGA+AGG | + | chr8.2:13920237-13920256 | MS.gene62396:intron | 45.0% | |
| AGCTACTGCCTAACTAGCTA+GGG | - | chr8.2:13921117-13921136 | None:intergenic | 45.0% | |
| ATGTAGCAGAGTTGTTCAGC+AGG | - | chr8.2:13919698-13919717 | None:intergenic | 45.0% | |
| CAACAACTGTCAATTGGGCT+AGG | + | chr8.2:13921579-13921598 | MS.gene62396:intron | 45.0% | |
| CAACCCTTTCCTCAGTAACA+TGG | - | chr8.2:13921935-13921954 | None:intergenic | 45.0% | |
| CAAGGCATATAGAGAAAGGG+AGG | + | chr8.2:13920225-13920244 | MS.gene62396:intron | 45.0% | |
| CACCCATGTTACTGAGGAAA+GGG | + | chr8.2:13921929-13921948 | MS.gene62396:CDS | 45.0% | |
| CTAGCCCAATTGACAGTTGT+TGG | - | chr8.2:13921581-13921600 | None:intergenic | 45.0% | |
| GAAATAGTGACCGTTCGATG+TGG | + | chr8.2:13920783-13920802 | MS.gene62396:CDS | 45.0% | |
| GCTTCTCTGTGACTGATATC+AGG | - | chr8.2:13922408-13922427 | None:intergenic | 45.0% | |
| GGAAGAGATTCAGAGGATCA+AGG | + | chr8.2:13922374-13922393 | MS.gene62396:CDS | 45.0% | |
| GTGGTCACTGCACAAATCTA+TGG | + | chr8.2:13920802-13920821 | MS.gene62396:CDS | 45.0% | |
| TATGCAGGGAAGAGATTCAG+AGG | + | chr8.2:13922367-13922386 | MS.gene62396:intron | 45.0% | |
| TCTGGATCCTAACCTAGCTA+GGG | + | chr8.2:13920985-13921004 | MS.gene62396:intron | 45.0% | |
| TTCTCTCTTTCTGGGCTTGA+TGG | + | chr8.2:13920056-13920075 | MS.gene62396:intron | 45.0% | |
| TTCTGGATCCTAACCTAGCT+AGG | + | chr8.2:13920984-13921003 | MS.gene62396:intron | 45.0% | |
| !! | TCAGTATGGTTTGGCTTGGT+GGG | - | chr8.2:13921219-13921238 | None:intergenic | 45.0% |
| !! | TTCAGTATGGTTTGGCTTGG+TGG | - | chr8.2:13921220-13921239 | None:intergenic | 45.0% |
| !!! | AGTAATTAATTATTAATTTT+AGG | + | chr8.2:13921382-13921401 | MS.gene62396:intron | 5.0% |
| !!! | ATATTTTTTATAATAAAGAT+TGG | - | chr8.2:13921423-13921442 | None:intergenic | 5.0% |
| !!! | TATTTTATATTTAAATAGAT+AGG | - | chr8.2:13922003-13922022 | None:intergenic | 5.0% |
| !!! | TTTTGTTTATTATATATTTT+TGG | + | chr8.2:13921528-13921547 | MS.gene62396:intron | 5.0% |
| AATTTCCAGCTCCCGAGAAG+AGG | + | chr8.2:13922198-13922217 | MS.gene62396:intron | 50.0% | |
| ACCAACCACCCATGTTACTG+AGG | + | chr8.2:13921923-13921942 | MS.gene62396:CDS | 50.0% | |
| AGGTACACGTTGCCTCTTCT+CGG | - | chr8.2:13922213-13922232 | None:intergenic | 50.0% | |
| CAGCTACTGCCTAACTAGCT+AGG | - | chr8.2:13921118-13921137 | None:intergenic | 50.0% | |
| CCACCCATGTTACTGAGGAA+AGG | + | chr8.2:13921928-13921947 | MS.gene62396:CDS | 50.0% | |
| CCACTCCCAAATGCAACGAT+AGG | + | chr8.2:13921883-13921902 | MS.gene62396:CDS | 50.0% | |
| CCAGAAACCCTAGCTAGGTT+AGG | - | chr8.2:13920995-13921014 | None:intergenic | 50.0% | |
| CCATGACAGTGACTGAAACG+CGG | - | chr8.2:13920844-13920863 | None:intergenic | 50.0% | |
| CCTAACCTAGCTAGGGTTTC+TGG | + | chr8.2:13920992-13921011 | MS.gene62396:intron | 50.0% | |
| CCTATCGTTGCATTTGGGAG+TGG | - | chr8.2:13921886-13921905 | None:intergenic | 50.0% | |
| CCTTTCCTCAGTAACATGGG+TGG | - | chr8.2:13921931-13921950 | None:intergenic | 50.0% | |
| GAGTCAAGTCTCAATCTCCC+TGG | + | chr8.2:13920089-13920108 | MS.gene62396:intron | 50.0% | |
| TATGGCGGCTTACTTACAGG+TGG | - | chr8.2:13921147-13921166 | None:intergenic | 50.0% | |
| TCCTCAGTAACATGGGTGGT+TGG | - | chr8.2:13921927-13921946 | None:intergenic | 50.0% | |
| TCTGGATTCATGCAGTGGCT+AGG | - | chr8.2:13921843-13921862 | None:intergenic | 50.0% | |
| TGAGCTAGCCCTAGCTAGTT+AGG | + | chr8.2:13921106-13921125 | MS.gene62396:intron | 50.0% | |
| TGTGCAGTGACCACATCGAA+CGG | - | chr8.2:13920796-13920815 | None:intergenic | 50.0% | |
| !! | ACTACTAGCTAGGGGGTGTT+TGG | - | chr8.2:13921365-13921384 | None:intergenic | 50.0% |
| !! | ATGGTTTGGCTTGGTGGGTT+AGG | - | chr8.2:13921214-13921233 | None:intergenic | 50.0% |
| CCGCGTTTCAGTCACTGTCA+TGG | + | chr8.2:13920841-13920860 | MS.gene62396:CDS | 55.0% | |
| GGGAGGACAAAGTGAAGGTG+TGG | + | chr8.2:13920242-13920261 | MS.gene62396:intron | 55.0% | |
| GGTACACGTTGCCTCTTCTC+GGG | - | chr8.2:13922212-13922231 | None:intergenic | 55.0% | |
| TGACAGTGACTGAAACGCGG+CGG | - | chr8.2:13920841-13920860 | None:intergenic | 55.0% | |
| !! | CTAGCTAGGGCTAGCTCATC+AGG | - | chr8.2:13921104-13921123 | None:intergenic | 55.0% |
| !! | AGGGGGTGTTTGGCTGGATG+AGG | - | chr8.2:13921355-13921374 | None:intergenic | 60.0% |
| !! | CTAGCTAGGGGGTGTTTGGC+TGG | - | chr8.2:13921361-13921380 | None:intergenic | 60.0% |
| CGTTGCCTCTTCTCGGGAGC+TGG | - | chr8.2:13922206-13922225 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 13919668 | 13922748 | 13919668 | ID=MS.gene62396 |
| chr8.2 | mRNA | 13919668 | 13922748 | 13919668 | ID=MS.gene62396.t1;Parent=MS.gene62396 |
| chr8.2 | exon | 13919668 | 13919748 | 13919668 | ID=MS.gene62396.t1.exon1;Parent=MS.gene62396.t1 |
| chr8.2 | CDS | 13919668 | 13919748 | 13919668 | ID=cds.MS.gene62396.t1;Parent=MS.gene62396.t1 |
| chr8.2 | exon | 13920756 | 13920875 | 13920756 | ID=MS.gene62396.t1.exon2;Parent=MS.gene62396.t1 |
| chr8.2 | CDS | 13920756 | 13920875 | 13920756 | ID=cds.MS.gene62396.t1;Parent=MS.gene62396.t1 |
| chr8.2 | exon | 13921837 | 13921963 | 13921837 | ID=MS.gene62396.t1.exon3;Parent=MS.gene62396.t1 |
| chr8.2 | CDS | 13921837 | 13921963 | 13921837 | ID=cds.MS.gene62396.t1;Parent=MS.gene62396.t1 |
| chr8.2 | exon | 13922207 | 13922255 | 13922207 | ID=MS.gene62396.t1.exon4;Parent=MS.gene62396.t1 |
| chr8.2 | CDS | 13922207 | 13922255 | 13922207 | ID=cds.MS.gene62396.t1;Parent=MS.gene62396.t1 |
| chr8.2 | exon | 13922374 | 13922449 | 13922374 | ID=MS.gene62396.t1.exon5;Parent=MS.gene62396.t1 |
| chr8.2 | CDS | 13922374 | 13922449 | 13922374 | ID=cds.MS.gene62396.t1;Parent=MS.gene62396.t1 |
| chr8.2 | exon | 13922534 | 13922602 | 13922534 | ID=MS.gene62396.t1.exon6;Parent=MS.gene62396.t1 |
| chr8.2 | CDS | 13922534 | 13922602 | 13922534 | ID=cds.MS.gene62396.t1;Parent=MS.gene62396.t1 |
| chr8.2 | exon | 13922701 | 13922748 | 13922701 | ID=MS.gene62396.t1.exon7;Parent=MS.gene62396.t1 |
| chr8.2 | CDS | 13922701 | 13922748 | 13922701 | ID=cds.MS.gene62396.t1;Parent=MS.gene62396.t1 |
| Gene Sequence |
| Protein sequence |
