Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62504.t1 | XP_003598119.1 | 82.5 | 464 | 51 | 1 | 1 | 434 | 1 | 464 | 1.40E-92 | 350.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62504.t1 | G7IV97 | 82.5 | 464 | 51 | 1 | 1 | 434 | 1 | 464 | 1.0e-92 | 350.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene62504 | 0.82954 | 4.86E-55 | -1.69E-46 |
| MS.gene049887 | MS.gene62504 | 0.812468 | 4.18E-51 | -1.69E-46 |
| MS.gene050253 | MS.gene62504 | 0.80638 | 8.46E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene62504 | 0.828992 | 6.60E-55 | -1.69E-46 |
| MS.gene051102 | MS.gene62504 | 0.808984 | 2.37E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene62504 | 0.810426 | 1.16E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene62504 | 0.805191 | 1.50E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene62504 | 0.80058 | 1.35E-48 | -1.69E-46 |
| MS.gene053144 | MS.gene62504 | 0.801614 | 8.29E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene62504 | 0.837298 | 5.64E-57 | -1.69E-46 |
| MS.gene054584 | MS.gene62504 | 0.80273 | 4.88E-49 | -1.69E-46 |
| MS.gene055144 | MS.gene62504 | 0.819024 | 1.44E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene62504 | 0.828074 | 1.10E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene62504 | 0.811786 | 5.88E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene62504 | 0.810225 | 1.28E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene62504 | 0.848967 | 4.37E-60 | -1.69E-46 |
| MS.gene055513 | MS.gene62504 | 0.805362 | 1.38E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene62504 | 0.813198 | 2.89E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene62504 | 0.817902 | 2.59E-52 | -1.69E-46 |
| MS.gene056507 | MS.gene62504 | 0.800483 | 1.41E-48 | -1.69E-46 |
| MS.gene058339 | MS.gene62504 | 0.875418 | 3.13E-68 | -1.69E-46 |
| MS.gene058360 | MS.gene62504 | 0.804603 | 2.00E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene62504 | 0.806184 | 9.30E-50 | -1.69E-46 |
| MS.gene058639 | MS.gene62504 | 0.818072 | 2.37E-52 | -1.69E-46 |
| MS.gene058852 | MS.gene62504 | 0.80859 | 2.87E-50 | -1.69E-46 |
| MS.gene059171 | MS.gene62504 | 0.844237 | 8.56E-59 | -1.69E-46 |
| MS.gene059713 | MS.gene62504 | 0.810703 | 1.01E-50 | -1.69E-46 |
| MS.gene061006 | MS.gene62504 | 0.827782 | 1.29E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62504.t1 | MTR_3g007480 | 84.861 | 469 | 31 | 5 | 1 | 434 | 1 | 464 | 0.0 | 739 |
| MS.gene62504.t1 | MTR_8g046245 | 25.113 | 442 | 257 | 19 | 9 | 430 | 24 | 411 | 3.95e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTACTTTCATTTGATTT+AGG | 0.150696 | 3.3:+3661149 | None:intergenic |
| TGTGATATTGGCAATATTAA+AGG | 0.196479 | 3.3:-3661320 | MS.gene62504:CDS |
| TCTTCAGTTGGTTCTTCTTC+TGG | 0.202511 | 3.3:+3661236 | None:intergenic |
| GCTAAAGTTGAGTATGATTT+TGG | 0.225786 | 3.3:-3661425 | MS.gene62504:CDS |
| GTTCCATCACATTGTGATAT+TGG | 0.249319 | 3.3:-3661332 | MS.gene62504:CDS |
| GAAATCATCAATGATAAATT+TGG | 0.257593 | 3.3:-3660471 | MS.gene62504:CDS |
| AGTTGGTTCTTCTTCTGGTT+GGG | 0.269837 | 3.3:+3661241 | None:intergenic |
| GGGTCTCTACCTGGAATATT+TGG | 0.277381 | 3.3:+3661263 | None:intergenic |
| GATCAGCTGGATCAAATAAA+AGG | 0.294691 | 3.3:-3661379 | MS.gene62504:CDS |
| AGATCCTTTGCTTTCGTCCT+TGG | 0.309842 | 3.3:+3660545 | None:intergenic |
| AAAAGAGTCTTTACCTCAAA+AGG | 0.317317 | 3.3:-3660904 | MS.gene62504:CDS |
| TAAAGAGTCTTTACCTCAAA+AGG | 0.317317 | 3.3:-3660946 | MS.gene62504:CDS |
| CAGTTGGTTCTTCTTCTGGT+TGG | 0.325729 | 3.3:+3661240 | None:intergenic |
| AAAAGAGTCTTTACCTCAAA+AGG | 0.333460 | 3.3:-3660862 | MS.gene62504:CDS |
| AAGTGTAAAAGATGAGAATA+AGG | 0.339593 | 3.3:-3660676 | MS.gene62504:CDS |
| TCAAACAAAAGTTGAGAGTA+AGG | 0.382024 | 3.3:-3660826 | MS.gene62504:CDS |
| GTTGGTTCTTCTTCTGGTTG+GGG | 0.392276 | 3.3:+3661242 | None:intergenic |
| CTGATTGTTCAAATTCCTGA+TGG | 0.416874 | 3.3:-3661888 | MS.gene62504:intron |
| ACGCGAAGAACGATACTTGT+AGG | 0.421266 | 3.3:+3660275 | None:intergenic |
| ACAATCAGAAGGTGTGAGTC+TGG | 0.429448 | 3.3:+3661903 | None:intergenic |
| CTTGATACTTTACATTGAAA+CGG | 0.443963 | 3.3:+3661354 | None:intergenic |
| ACAAGAATCTAAACCTCAAA+AGG | 0.449860 | 3.3:-3660988 | MS.gene62504:CDS |
| ATCACAATGCCAAATATTCC+AGG | 0.452545 | 3.3:-3661272 | MS.gene62504:CDS |
| ACATGAGTCTAAGCCTCAAA+AGG | 0.453852 | 3.3:-3660763 | MS.gene62504:CDS |
| GGAAAAGCAAATGGTTGTAA+AGG | 0.465521 | 3.3:-3660655 | MS.gene62504:CDS |
| AATATTAAAGGTAAGATTGA+TGG | 0.465846 | 3.3:-3661308 | MS.gene62504:CDS |
| CCTCAAAAGGGTCAAGATCA+AGG | 0.469599 | 3.3:-3660750 | MS.gene62504:CDS |
| TGAGGAGGTAAATGATCAAA+AGG | 0.474792 | 3.3:-3661198 | MS.gene62504:CDS |
| AAAAGTGACTATGCCTCAAA+AGG | 0.476510 | 3.3:-3661102 | MS.gene62504:CDS |
| TGAGAATAAGGAAAAGCAAA+TGG | 0.489525 | 3.3:-3660664 | MS.gene62504:CDS |
| ACAATTCTTGTGGTTGCACT+TGG | 0.497082 | 3.3:-3660309 | MS.gene62504:CDS |
| GGTTGTAAAGGAAGAAACTA+AGG | 0.509155 | 3.3:-3660643 | MS.gene62504:CDS |
| TCGTTCTTCGCGTAGAGCAT+AGG | 0.518943 | 3.3:-3660265 | None:intergenic |
| GAGGTTGAAGTCTCATGATA+AGG | 0.524467 | 3.3:+3661023 | None:intergenic |
| TTGGTTCTTCTTCTGGTTGG+GGG | 0.535313 | 3.3:+3661243 | None:intergenic |
| ATTCTTCCCCTACACTTGAA+AGG | 0.537484 | 3.3:-3660572 | MS.gene62504:CDS |
| AAAGAGTCTTTACCTCAAAA+GGG | 0.541988 | 3.3:-3660861 | MS.gene62504:CDS |
| AAAGAGTCTTTACCTCAAAA+GGG | 0.542286 | 3.3:-3660945 | MS.gene62504:CDS |
| TTCTTGTGTGGCTTCTTGTG+AGG | 0.555920 | 3.3:+3661004 | None:intergenic |
| AATGAAAACATACAAAGAGA+AGG | 0.559419 | 3.3:-3660499 | MS.gene62504:CDS |
| AAAGAGTCTTTACCTCAAAA+GGG | 0.559679 | 3.3:-3660903 | MS.gene62504:CDS |
| CATGAGTCTAAGCCTCAAAA+GGG | 0.570863 | 3.3:-3660762 | MS.gene62504:CDS |
| ATGAAAACATACAAAGAGAA+GGG | 0.576008 | 3.3:-3660498 | MS.gene62504:CDS |
| AGAAAATAATGATAAAGTTG+AGG | 0.576911 | 3.3:-3661216 | MS.gene62504:CDS |
| TTCGTAGTCATATGATTGCA+AGG | 0.590913 | 3.3:+3661959 | None:intergenic |
| AAAACCAAGGACGAAAGCAA+AGG | 0.593213 | 3.3:-3660549 | MS.gene62504:CDS |
| TTGCCAATATCACAATGTGA+TGG | 0.596036 | 3.3:+3661329 | None:intergenic |
| CAGGAATTTGAACAATCAGA+AGG | 0.596828 | 3.3:+3661892 | None:intergenic |
| GTTGCAAAAGTTGATAGCAA+AGG | 0.598881 | 3.3:-3661050 | MS.gene62504:CDS |
| ACTAGTTACAGCTTGAGTAG+TGG | 0.603492 | 3.3:+3660386 | None:intergenic |
| CTGTAACTAGTTATGCAAAG+AGG | 0.604653 | 3.3:-3660374 | MS.gene62504:CDS |
| TTGAGGTTTAGATTCTTGTG+TGG | 0.604864 | 3.3:+3660992 | None:intergenic |
| AACAGTAAAGTCACATGTGG+CGG | 0.614000 | 3.3:-3660598 | MS.gene62504:CDS |
| CACTGGTGCAACAATTCTTG+TGG | 0.614455 | 3.3:-3660319 | MS.gene62504:CDS |
| AAATAATGATAAAGTTGAGG+AGG | 0.620332 | 3.3:-3661213 | MS.gene62504:CDS |
| AAACAAAAGCTAATATACAC+TGG | 0.628935 | 3.3:-3660336 | MS.gene62504:CDS |
| GAGACTTCAACTCAATCAGA+AGG | 0.630544 | 3.3:-3660789 | MS.gene62504:CDS |
| AACATACAAAGAGAAGGGAA+AGG | 0.642709 | 3.3:-3660493 | MS.gene62504:CDS |
| AAAAGATTCTTGATTCAACA+AGG | 0.644606 | 3.3:-3660434 | MS.gene62504:CDS |
| AGAAACAGTAAAGTCACATG+TGG | 0.668295 | 3.3:-3660601 | MS.gene62504:CDS |
| TGGAGGAAAAGTTTCAACTG+TGG | 0.675102 | 3.3:+3660521 | None:intergenic |
| AAGGACAAGAATCAAAGACA+TGG | 0.679753 | 3.3:-3660415 | MS.gene62504:CDS |
| TACACTTGAAAGGAAAACCA+AGG | 0.691297 | 3.3:-3660562 | MS.gene62504:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATAGTAATATTTAACA+GGG | - | chr3.3:3660716-3660735 | MS.gene62504:CDS | 10.0% |
| !!! | TTTTGTGTTTATTTATTTTT+TGG | - | chr3.3:3660404-3660423 | MS.gene62504:CDS | 10.0% |
| !! | AATAAAAATTTGAAAAGCAA+TGG | + | chr3.3:3660534-3660553 | None:intergenic | 15.0% |
| !! | CTTAAATAGTAATATTTAAC+AGG | - | chr3.3:3660715-3660734 | MS.gene62504:CDS | 15.0% |
| !! | TAAAATAAAACTACCATAAA+AGG | + | chr3.3:3660694-3660713 | None:intergenic | 15.0% |
| !! | AATATTAAAGGTAAGATTGA+TGG | - | chr3.3:3660924-3660943 | MS.gene62504:CDS | 20.0% |
| !! | AGAAAATAATGATAAAGTTG+AGG | - | chr3.3:3661016-3661035 | MS.gene62504:CDS | 20.0% |
| !! | GAAATCATCAATGATAAATT+TGG | - | chr3.3:3661761-3661780 | MS.gene62504:intron | 20.0% |
| !!! | GTATTCTTTTTTTCAATTAC+TGG | + | chr3.3:3660308-3660327 | None:intergenic | 20.0% |
| !!! | TCTTTACTTTCATTTGATTT+AGG | + | chr3.3:3661086-3661105 | None:intergenic | 20.0% |
| !!! | TCTTTTTCCTTTCTTTATAA+AGG | - | chr3.3:3660455-3660474 | MS.gene62504:CDS | 20.0% |
| !!! | TGTGTAATTTAAAGTTGAAT+AGG | + | chr3.3:3660569-3660588 | None:intergenic | 20.0% |
| !!! | TTATCATTATTTTCTTCAGT+TGG | + | chr3.3:3661011-3661030 | None:intergenic | 20.0% |
| ! | AAAAATTTGAAAAGCAATGG+AGG | + | chr3.3:3660531-3660550 | None:intergenic | 25.0% |
| ! | AAAAGATTCTTGATTCAACA+AGG | - | chr3.3:3661798-3661817 | MS.gene62504:intron | 25.0% |
| ! | AAAATTTGAAAAGCAATGGA+GGG | + | chr3.3:3660530-3660549 | None:intergenic | 25.0% |
| ! | AAACAAAAGCTAATATACAC+TGG | - | chr3.3:3661896-3661915 | MS.gene62504:CDS | 25.0% |
| ! | AAATAATGATAAAGTTGAGG+AGG | - | chr3.3:3661019-3661038 | MS.gene62504:CDS | 25.0% |
| ! | AAGTGTAAAAGATGAGAATA+AGG | - | chr3.3:3661556-3661575 | MS.gene62504:intron | 25.0% |
| ! | AATGAAAACATACAAAGAGA+AGG | - | chr3.3:3661733-3661752 | MS.gene62504:intron | 25.0% |
| ! | ATGAAAACATACAAAGAGAA+GGG | - | chr3.3:3661734-3661753 | MS.gene62504:intron | 25.0% |
| ! | CTTGATACTTTACATTGAAA+CGG | + | chr3.3:3660881-3660900 | None:intergenic | 25.0% |
| ! | TAAACACAAAAACATATGAG+TGG | + | chr3.3:3660395-3660414 | None:intergenic | 25.0% |
| ! | TACTTGATGTTGAAACAATT+CGG | - | chr3.3:3660637-3660656 | MS.gene62504:CDS | 25.0% |
| ! | TGAAGAACCTTTATAAAGAA+AGG | + | chr3.3:3660465-3660484 | None:intergenic | 25.0% |
| ! | TGTGATATTGGCAATATTAA+AGG | - | chr3.3:3660912-3660931 | MS.gene62504:CDS | 25.0% |
| !! | CTTTTTGTGAAATTTCTTCT+TGG | + | chr3.3:3661355-3661374 | None:intergenic | 25.0% |
| !! | TTCTCTTTGTATGTTTTCAT+TGG | + | chr3.3:3661734-3661753 | None:intergenic | 25.0% |
| !!! | CTTTTTGAGAAATTTCTTCT+TGG | + | chr3.3:3661313-3661332 | None:intergenic | 25.0% |
| AAAAGAGTCTTTACCTCAAA+AGG | - | chr3.3:3661328-3661347 | MS.gene62504:CDS | 30.0% | |
| AAAGAGTCTTTACCTCAAAA+GGG | - | chr3.3:3661287-3661306 | MS.gene62504:CDS | 30.0% | |
| AATTATTTAATGCACCCTAC+AGG | - | chr3.3:3660762-3660781 | MS.gene62504:CDS | 30.0% | |
| ACAAGAATCTAAACCTCAAA+AGG | - | chr3.3:3661244-3661263 | MS.gene62504:CDS | 30.0% | |
| CATAAAAGGCTAACATTTGT+TGG | + | chr3.3:3660680-3660699 | None:intergenic | 30.0% | |
| TAAAGAGTCTTTACCTCAAA+AGG | - | chr3.3:3661286-3661305 | MS.gene62504:CDS | 30.0% | |
| TCAAACAAAAGTTGAGAGTA+AGG | - | chr3.3:3661406-3661425 | MS.gene62504:CDS | 30.0% | |
| TGAGAATAAGGAAAAGCAAA+TGG | - | chr3.3:3661568-3661587 | MS.gene62504:intron | 30.0% | |
| ! | AAGTTGAGTATGATTTTGGA+AGG | - | chr3.3:3660811-3660830 | MS.gene62504:CDS | 30.0% |
| ! | ATTTCTTGTTGATCCTTTTG+AGG | + | chr3.3:3661260-3661279 | None:intergenic | 30.0% |
| ! | CTCATCTTTTACACTTTCTT+CGG | + | chr3.3:3661552-3661571 | None:intergenic | 30.0% |
| ! | GCTAAAGTTGAGTATGATTT+TGG | - | chr3.3:3660807-3660826 | MS.gene62504:CDS | 30.0% |
| ! | TCTTTGTATGTTTTCATTGG+AGG | + | chr3.3:3661731-3661750 | None:intergenic | 30.0% |
| ! | TTTGCATCTTTTGTATCTGT+AGG | + | chr3.3:3661521-3661540 | None:intergenic | 30.0% |
| ! | TTTTCTTCTTGAACCTTTTG+AGG | + | chr3.3:3661146-3661165 | None:intergenic | 30.0% |
| !! | AGTTGAGTATGATTTTGGAA+GGG | - | chr3.3:3660812-3660831 | MS.gene62504:CDS | 30.0% |
| !!! | CAACAAATGTTAGCCTTTTA+TGG | - | chr3.3:3660678-3660697 | MS.gene62504:CDS | 30.0% |
| AAAAGTGACTATGCCTCAAA+AGG | - | chr3.3:3661130-3661149 | MS.gene62504:CDS | 35.0% | |
| AACATACAAAGAGAAGGGAA+AGG | - | chr3.3:3661739-3661758 | MS.gene62504:intron | 35.0% | |
| AAGGACAAGAATCAAAGACA+TGG | - | chr3.3:3661817-3661836 | MS.gene62504:intron | 35.0% | |
| AGAAACAGTAAAGTCACATG+TGG | - | chr3.3:3661631-3661650 | MS.gene62504:intron | 35.0% | |
| ATCACAATGCCAAATATTCC+AGG | - | chr3.3:3660960-3660979 | MS.gene62504:CDS | 35.0% | |
| CAGGAATTTGAACAATCAGA+AGG | + | chr3.3:3660343-3660362 | None:intergenic | 35.0% | |
| CTGATTGTTCAAATTCCTGA+TGG | - | chr3.3:3660344-3660363 | MS.gene62504:CDS | 35.0% | |
| CTGTAACTAGTTATGCAAAG+AGG | - | chr3.3:3661858-3661877 | MS.gene62504:intron | 35.0% | |
| GAAACAATTCGGTTAAACAC+TGG | - | chr3.3:3660648-3660667 | MS.gene62504:CDS | 35.0% | |
| GATCAGCTGGATCAAATAAA+AGG | - | chr3.3:3660853-3660872 | MS.gene62504:CDS | 35.0% | |
| GGAAAAGCAAATGGTTGTAA+AGG | - | chr3.3:3661577-3661596 | MS.gene62504:intron | 35.0% | |
| GGTTGTAAAGGAAGAAACTA+AGG | - | chr3.3:3661589-3661608 | MS.gene62504:intron | 35.0% | |
| GTAAAACCAAACAAACCATC+AGG | + | chr3.3:3660362-3660381 | None:intergenic | 35.0% | |
| GTTCCATCACATTGTGATAT+TGG | - | chr3.3:3660900-3660919 | MS.gene62504:CDS | 35.0% | |
| TACACTTGAAAGGAAAACCA+AGG | - | chr3.3:3661670-3661689 | MS.gene62504:intron | 35.0% | |
| TGAGGAGGTAAATGATCAAA+AGG | - | chr3.3:3661034-3661053 | MS.gene62504:CDS | 35.0% | |
| TTCGTAGTCATATGATTGCA+AGG | + | chr3.3:3660276-3660295 | None:intergenic | 35.0% | |
| TTGAGGTTTAGATTCTTGTG+TGG | + | chr3.3:3661243-3661262 | None:intergenic | 35.0% | |
| TTGCCAATATCACAATGTGA+TGG | + | chr3.3:3660906-3660925 | None:intergenic | 35.0% | |
| ! | GAAATTTCTTGACCCTTTTG+AGG | + | chr3.3:3661386-3661405 | None:intergenic | 35.0% |
| !! | CAAATTCCTGATGGTTTGTT+TGG | - | chr3.3:3660353-3660372 | MS.gene62504:CDS | 35.0% |
| !! | GTTGCAAAAGTTGATAGCAA+AGG | - | chr3.3:3661182-3661201 | MS.gene62504:CDS | 35.0% |
| !! | TGGTTTTCCTTTCAAGTGTA+GGG | + | chr3.3:3661670-3661689 | None:intergenic | 35.0% |
| !! | TTGGTTTTCCTTTCAAGTGT+AGG | + | chr3.3:3661671-3661690 | None:intergenic | 35.0% |
| !!! | TCACTTTTTGAGCATCTTGT+GGG | + | chr3.3:3661118-3661137 | None:intergenic | 35.0% |
| AAAACCAAGGACGAAAGCAA+AGG | - | chr3.3:3661683-3661702 | MS.gene62504:intron | 40.0% | |
| AACAGTAAAGTCACATGTGG+CGG | - | chr3.3:3661634-3661653 | MS.gene62504:intron | 40.0% | |
| ACAATTCTTGTGGTTGCACT+TGG | - | chr3.3:3661923-3661942 | MS.gene62504:CDS | 40.0% | |
| ACATGAGTCTAAGCCTCAAA+AGG | - | chr3.3:3661469-3661488 | MS.gene62504:intron | 40.0% | |
| ACTAGTTACAGCTTGAGTAG+TGG | + | chr3.3:3661849-3661868 | None:intergenic | 40.0% | |
| ATTCTTCCCCTACACTTGAA+AGG | - | chr3.3:3661660-3661679 | MS.gene62504:intron | 40.0% | |
| CATGAGTCTAAGCCTCAAAA+GGG | - | chr3.3:3661470-3661489 | MS.gene62504:intron | 40.0% | |
| GAGACTTCAACTCAATCAGA+AGG | - | chr3.3:3661443-3661462 | MS.gene62504:CDS | 40.0% | |
| GAGGTTGAAGTCTCATGATA+AGG | + | chr3.3:3661212-3661231 | None:intergenic | 40.0% | |
| TGGAGGAAAAGTTTCAACTG+TGG | + | chr3.3:3661714-3661733 | None:intergenic | 40.0% | |
| ! | AGTTGGTTCTTCTTCTGGTT+GGG | + | chr3.3:3660994-3661013 | None:intergenic | 40.0% |
| ! | ATTTCTTCTTGGCCCTTTTG+AGG | + | chr3.3:3661302-3661321 | None:intergenic | 40.0% |
| ! | TCTTCAGTTGGTTCTTCTTC+TGG | + | chr3.3:3660999-3661018 | None:intergenic | 40.0% |
| ! | TTTGGAAGGGTGAGAGTTTT+TGG | - | chr3.3:3660825-3660844 | MS.gene62504:CDS | 40.0% |
| !! | AAAGCAATGGAGGGTATCAA+AGG | + | chr3.3:3660521-3660540 | None:intergenic | 40.0% |
| !! | CACTTTTTGAGCATCTTGTG+GGG | + | chr3.3:3661117-3661136 | None:intergenic | 40.0% |
| !! | GGTTTTCCTTTCAAGTGTAG+GGG | + | chr3.3:3661669-3661688 | None:intergenic | 40.0% |
| !!! | GTCACTTTTTGAGCATCTTG+TGG | + | chr3.3:3661119-3661138 | None:intergenic | 40.0% |
| !!! | GTTTTTGGTGAAAGATCAGC+TGG | - | chr3.3:3660840-3660859 | MS.gene62504:CDS | 40.0% |
| ACGCGAAGAACGATACTTGT+AGG | + | chr3.3:3661960-3661979 | None:intergenic | 45.0% | |
| AGATCCTTTGCTTTCGTCCT+TGG | + | chr3.3:3661690-3661709 | None:intergenic | 45.0% | |
| CACTGGTGCAACAATTCTTG+TGG | - | chr3.3:3661913-3661932 | MS.gene62504:CDS | 45.0% | |
| CCTCAAAAGGGTCAAGATCA+AGG | - | chr3.3:3661482-3661501 | MS.gene62504:intron | 45.0% | |
| GGGTCTCTACCTGGAATATT+TGG | + | chr3.3:3660972-3660991 | None:intergenic | 45.0% | |
| TTCTTGTGTGGCTTCTTGTG+AGG | + | chr3.3:3661231-3661250 | None:intergenic | 45.0% | |
| ! | ACAATCAGAAGGTGTGAGTC+TGG | + | chr3.3:3660332-3660351 | None:intergenic | 45.0% |
| ! | CAGTTGGTTCTTCTTCTGGT+TGG | + | chr3.3:3660995-3661014 | None:intergenic | 45.0% |
| ! | CCTTGATCTTGACCCTTTTG+AGG | + | chr3.3:3661485-3661504 | None:intergenic | 45.0% |
| ! | GTTGGTTCTTCTTCTGGTTG+GGG | + | chr3.3:3660993-3661012 | None:intergenic | 45.0% |
| ! | TTGGTTCTTCTTCTGGTTGG+GGG | + | chr3.3:3660992-3661011 | None:intergenic | 45.0% |
| ! | ACCCTACAGGTTTTGCACGA+GGG | - | chr3.3:3660775-3660794 | MS.gene62504:CDS | 50.0% |
| ! | GGTTTTGCACGAGGGGATAT+TGG | - | chr3.3:3660783-3660802 | MS.gene62504:CDS | 50.0% |
| CCCCTCGTGCAAAACCTGTA+GGG | + | chr3.3:3660779-3660798 | None:intergenic | 55.0% | |
| TCCCCTCGTGCAAAACCTGT+AGG | + | chr3.3:3660780-3660799 | None:intergenic | 55.0% | |
| ! | CACCCTACAGGTTTTGCACG+AGG | - | chr3.3:3660774-3660793 | MS.gene62504:CDS | 55.0% |
| ! | CCCTACAGGTTTTGCACGAG+GGG | - | chr3.3:3660776-3660795 | MS.gene62504:CDS | 55.0% |
| TCTGGTTGGGGGTCTCTACC+TGG | + | chr3.3:3660981-3661000 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 3660266 | 3661988 | 3660266 | ID=MS.gene62504 |
| chr3.3 | mRNA | 3660266 | 3661988 | 3660266 | ID=MS.gene62504.t1;Parent=MS.gene62504 |
| chr3.3 | exon | 3661889 | 3661988 | 3661889 | ID=MS.gene62504.t1.exon1;Parent=MS.gene62504.t1 |
| chr3.3 | CDS | 3661889 | 3661988 | 3661889 | ID=cds.MS.gene62504.t1;Parent=MS.gene62504.t1 |
| chr3.3 | exon | 3660266 | 3661470 | 3660266 | ID=MS.gene62504.t1.exon2;Parent=MS.gene62504.t1 |
| chr3.3 | CDS | 3660266 | 3661470 | 3660266 | ID=cds.MS.gene62504.t1;Parent=MS.gene62504.t1 |
| Gene Sequence |
| Protein sequence |
