Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62616.t1 | XP_003631075.2 | 98.3 | 173 | 3 | 0 | 21 | 193 | 1 | 173 | 5.80E-94 | 353.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62616.t1 | Q9XFK7 | 76.9 | 173 | 39 | 1 | 22 | 193 | 1 | 173 | 7.2e-77 | 288.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62616.t1 | G7LDA2 | 98.3 | 173 | 3 | 0 | 21 | 193 | 1 | 173 | 4.2e-94 | 353.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene62616 | MS.gene000759 | PPI |
| MS.gene62616 | MS.gene51913 | PPI |
| MS.gene62616 | MS.gene034467 | PPI |
| MS.gene62616 | MS.gene35397 | PPI |
| MS.gene62616 | MS.gene51950 | PPI |
| MS.gene62616 | MS.gene43049 | PPI |
| MS.gene62616 | MS.gene042580 | PPI |
| MS.gene62616 | MS.gene98252 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62616.t1 | MTR_8g106840 | 98.266 | 173 | 3 | 0 | 21 | 193 | 1 | 173 | 1.57e-125 | 351 |
| MS.gene62616.t1 | MTR_0020s0120 | 54.913 | 173 | 76 | 2 | 22 | 193 | 1 | 172 | 1.27e-64 | 197 |
| MS.gene62616.t1 | MTR_0020s0120 | 53.757 | 173 | 71 | 3 | 22 | 193 | 1 | 165 | 2.19e-61 | 188 |
| MS.gene62616.t1 | MTR_7g104460 | 52.874 | 174 | 81 | 1 | 21 | 193 | 1 | 174 | 3.48e-61 | 188 |
| MS.gene62616.t1 | MTR_2g086270 | 48.555 | 173 | 88 | 1 | 22 | 193 | 1 | 173 | 2.71e-56 | 176 |
| MS.gene62616.t1 | MTR_6g033040 | 51.149 | 174 | 83 | 2 | 21 | 193 | 1 | 173 | 1.29e-55 | 174 |
| MS.gene62616.t1 | MTR_7g084970 | 49.425 | 174 | 86 | 2 | 21 | 193 | 1 | 173 | 5.54e-55 | 172 |
| MS.gene62616.t1 | MTR_1g060190 | 49.091 | 165 | 82 | 2 | 21 | 183 | 1 | 165 | 1.40e-51 | 164 |
| MS.gene62616.t1 | MTR_7g006630 | 50.588 | 170 | 81 | 3 | 26 | 193 | 1 | 169 | 1.27e-47 | 154 |
| MS.gene62616.t1 | MTR_7g006690 | 50.888 | 169 | 80 | 3 | 21 | 187 | 1 | 168 | 1.34e-47 | 154 |
| MS.gene62616.t1 | MTR_7g085020 | 46.429 | 168 | 88 | 2 | 27 | 193 | 8 | 174 | 4.27e-45 | 147 |
| MS.gene62616.t1 | MTR_7g085040 | 46.012 | 163 | 82 | 4 | 26 | 187 | 6 | 163 | 1.04e-41 | 139 |
| MS.gene62616.t1 | MTR_5g078320 | 82.667 | 75 | 13 | 0 | 119 | 193 | 15 | 89 | 4.02e-39 | 129 |
| MS.gene62616.t1 | MTR_7g052830 | 82.353 | 34 | 6 | 0 | 88 | 121 | 1 | 34 | 4.46e-13 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62616.t1 | AT1G18100 | 76.879 | 173 | 39 | 1 | 22 | 193 | 1 | 173 | 1.06e-99 | 286 |
| MS.gene62616.t1 | AT5G62040 | 49.425 | 174 | 86 | 2 | 22 | 193 | 1 | 174 | 4.23e-57 | 178 |
| MS.gene62616.t1 | AT2G27550 | 50.857 | 175 | 84 | 2 | 21 | 193 | 1 | 175 | 4.38e-55 | 172 |
| MS.gene62616.t1 | AT5G03840 | 44.828 | 174 | 95 | 1 | 21 | 193 | 4 | 177 | 5.76e-53 | 167 |
| MS.gene62616.t1 | AT4G20370 | 51.190 | 168 | 80 | 2 | 21 | 187 | 1 | 167 | 6.59e-53 | 167 |
| MS.gene62616.t1 | AT1G65480 | 50.000 | 162 | 79 | 2 | 27 | 187 | 7 | 167 | 6.02e-52 | 165 |
| MS.gene62616.t1 | AT1G65480 | 50.000 | 162 | 79 | 2 | 27 | 187 | 51 | 211 | 1.22e-51 | 166 |
Find 64 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAGCCTGAGGCTCCTTC+TGG | 0.225327 | 4.2:-561795 | None:intergenic |
| CTCACGCATGTTTGGCTCAC+TGG | 0.230824 | 4.2:-559177 | None:intergenic |
| CAACCATTTGTGACATGTTT+AGG | 0.256839 | 4.2:-558955 | None:intergenic |
| TCCTTATATATACCTCGCTT+TGG | 0.299974 | 4.2:-559388 | None:intergenic |
| GGCTGCCTCGGTTGATCCTT+TGG | 0.316826 | 4.2:+558861 | MS.gene62616:CDS |
| CGCTTTGGGTTTGTTCCTCC+AGG | 0.320975 | 4.2:-559373 | None:intergenic |
| TCACTGGGGCTTGGTGCATC+TGG | 0.323583 | 4.2:-559161 | None:intergenic |
| GGCTGCTCAACCATTCCTAT+TGG | 0.334282 | 4.2:-561688 | None:intergenic |
| TGGATACCAACCGGTGGTTT+TGG | 0.353965 | 4.2:-561631 | None:intergenic |
| GATCTTGTGCATTGTCTTTG+TGG | 0.358801 | 4.2:+558828 | MS.gene62616:CDS |
| AGGATCGTGGTTGACATTCC+TGG | 0.370693 | 4.2:+559355 | MS.gene62616:intron |
| CCTTATATATACCTCGCTTT+GGG | 0.371664 | 4.2:-559387 | None:intergenic |
| CTTAGCCTGAGGCTCCTTCT+GGG | 0.376302 | 4.2:-561794 | None:intergenic |
| AAGGAGATTCTTCCATATAT+AGG | 0.387575 | 4.2:+561607 | MS.gene62616:CDS |
| TCACGCATGTTTGGCTCACT+GGG | 0.389982 | 4.2:-559176 | None:intergenic |
| CCACCCAAGGTCACTCTCAC+TGG | 0.397435 | 4.2:+559006 | MS.gene62616:CDS |
| ATGTTTGGCTCACTGGGGCT+TGG | 0.397820 | 4.2:-559170 | None:intergenic |
| TGTATCAGCTCACGCATGTT+TGG | 0.403877 | 4.2:-559185 | None:intergenic |
| TGGTATCCACCGATACATAT+TGG | 0.404436 | 4.2:+561645 | MS.gene62616:CDS |
| TTTGAGCAGAAGGGACCAAT+AGG | 0.418830 | 4.2:+561673 | MS.gene62616:CDS |
| TTGGTGGTTGGTCGTGTGAT+TGG | 0.419912 | 4.2:+558880 | MS.gene62616:CDS |
| CCAGTGAGAGTGACCTTGGG+TGG | 0.438911 | 4.2:-559006 | None:intergenic |
| GTTGGTATGTCTGTTTACTT+TGG | 0.440691 | 4.2:+558931 | MS.gene62616:CDS |
| GGTCCTAAACATGTCACAAA+TGG | 0.480505 | 4.2:+558952 | MS.gene62616:CDS |
| TCGGTTGATCCTTTGGTGGT+TGG | 0.485892 | 4.2:+558868 | MS.gene62616:CDS |
| ACATGCGTGAGCTGATACAC+TGG | 0.489252 | 4.2:+559189 | MS.gene62616:CDS |
| GATCACAAAGAAATTGTTGA+AGG | 0.501335 | 4.2:-558809 | None:intergenic |
| GACATGTTCATTCCATCTGT+TGG | 0.504699 | 4.2:+558913 | MS.gene62616:CDS |
| GTTTCCAGTGAGAGTGACCT+TGG | 0.510114 | 4.2:-559010 | None:intergenic |
| TGTCTTTGTGGTGATCATGA+TGG | 0.516443 | 4.2:+558840 | MS.gene62616:CDS |
| AGAAGGAGCCTCAGGCTAAG+AGG | 0.523160 | 4.2:+561797 | MS.gene62616:CDS |
| TTAAAGTAGACTGTAGCTAC+AGG | 0.523873 | 4.2:-561769 | None:intergenic |
| TGCCTCGGTTGATCCTTTGG+TGG | 0.525528 | 4.2:+558864 | MS.gene62616:CDS |
| ATGTATCGGTGGATACCAAC+CGG | 0.527511 | 4.2:-561640 | None:intergenic |
| TAACTCCCAGAAGGAGCCTC+AGG | 0.529044 | 4.2:+561789 | MS.gene62616:CDS |
| GGTCACTCTCACTGGAAACA+TGG | 0.545850 | 4.2:+559014 | MS.gene62616:CDS |
| TTTGCAAGTCAATTGAACCT+TGG | 0.546466 | 4.2:+561742 | MS.gene62616:CDS |
| GGTGGGTTGATAGCCATGGA+TGG | 0.548514 | 4.2:-558988 | None:intergenic |
| CAGTGAGAGTGACCTTGGGT+GGG | 0.551987 | 4.2:-559005 | None:intergenic |
| TTTCCAGTGAGAGTGACCTT+GGG | 0.557115 | 4.2:-559009 | None:intergenic |
| CTTGGGTGGGTTGATAGCCA+TGG | 0.562286 | 4.2:-558992 | None:intergenic |
| GGTGATCATGATGGCTGCCT+CGG | 0.563998 | 4.2:+558849 | MS.gene62616:CDS |
| CAAACAAAACCAATATGTAT+CGG | 0.565284 | 4.2:-561654 | None:intergenic |
| AGTGTTGAAACTGACTCTAC+TGG | 0.584655 | 4.2:-561713 | None:intergenic |
| TAAACAGACATACCAACAGA+TGG | 0.587934 | 4.2:-558925 | None:intergenic |
| ATCACACGACCAACCACCAA+AGG | 0.596985 | 4.2:-558877 | None:intergenic |
| TTGTGACATAAAGCCATCCA+TGG | 0.620992 | 4.2:+558975 | MS.gene62616:CDS |
| ATTGGCTGACCAGAGTGTAG+AGG | 0.622213 | 4.2:-559041 | None:intergenic |
| ACAAAACCAATATGTATCGG+TGG | 0.631832 | 4.2:-561651 | None:intergenic |
| CACGCATGTTTGGCTCACTG+GGG | 0.635008 | 4.2:-559175 | None:intergenic |
| CATGGATAACCTCTACACTC+TGG | 0.637951 | 4.2:+559032 | MS.gene62616:CDS |
| CATGGCTATCAACCCACCCA+AGG | 0.643435 | 4.2:+558993 | MS.gene62616:CDS |
| AGTCTACTTTAACTCCCAGA+AGG | 0.644955 | 4.2:+561780 | MS.gene62616:CDS |
| GCAGAAGGGACCAATAGGAA+TGG | 0.646075 | 4.2:+561678 | MS.gene62616:CDS |
| ATAGGACCAAAACCACCGGT+TGG | 0.655362 | 4.2:+561625 | MS.gene62616:CDS |
| ATATATAGGACCAAAACCAC+CGG | 0.662745 | 4.2:+561621 | MS.gene62616:CDS |
| AAATTGTTGAAGGACAAAGA+AGG | 0.664190 | 4.2:-558799 | None:intergenic |
| GTTCAACGCCTCTTAGCCTG+AGG | 0.669979 | 4.2:-561805 | None:intergenic |
| TTGAAACTGACTCTACTGGT+TGG | 0.690180 | 4.2:-561709 | None:intergenic |
| GGAGGAACAAACCCAAAGCG+AGG | 0.693274 | 4.2:+559376 | MS.gene62616:CDS |
| AACCACCAAAGGATCAACCG+AGG | 0.707404 | 4.2:-558866 | None:intergenic |
| ATCGTGGTTGACATTCCTGG+AGG | 0.727325 | 4.2:+559358 | MS.gene62616:CDS |
| TATCGGTGGATACCAACCGG+TGG | 0.737473 | 4.2:-561637 | None:intergenic |
| CTGTAGCTACAGGAAGACCA+AGG | 0.739753 | 4.2:-561759 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAGACA+TGG | - | chr4.2:560543-560562 | None:intergenic | 10.0% |
| !! | ATTCATATCAAAATAAAAAT+AGG | - | chr4.2:559307-559326 | None:intergenic | 10.0% |
| !! | TTCATATCAAAATAAAAATA+GGG | - | chr4.2:559306-559325 | None:intergenic | 10.0% |
| !!! | TGAGTTTATATAATTTTTTT+TGG | + | chr4.2:559515-559534 | MS.gene62616:intron | 10.0% |
| !!! | TTATTTATTATATTTTCCTT+TGG | - | chr4.2:560591-560610 | None:intergenic | 10.0% |
| !! | AAATTATAGAGTATGTATAA+AGG | - | chr4.2:561521-561540 | None:intergenic | 15.0% |
| !! | TAACAAAAATTTACTAATCA+CGG | + | chr4.2:560716-560735 | MS.gene62616:intron | 15.0% |
| !! | TCAAAAAGAAAAATAATTTG+TGG | - | chr4.2:559878-559897 | None:intergenic | 15.0% |
| !! | TTTACGAAAAAATAAATGTT+TGG | - | chr4.2:560028-560047 | None:intergenic | 15.0% |
| !!! | AACCTTAATTAATTTTTCTT+TGG | + | chr4.2:561574-561593 | MS.gene62616:intron | 15.0% |
| !!! | ATAAGGAAATAATTTTTGAT+CGG | + | chr4.2:559404-559423 | MS.gene62616:intron | 15.0% |
| !!! | CAAATTATTTTTCTTTTTGA+AGG | + | chr4.2:559878-559897 | MS.gene62616:intron | 15.0% |
| !!! | TTTTTTTTTTTTTAGACCAA+AGG | + | chr4.2:560572-560591 | MS.gene62616:intron | 15.0% |
| !! | AACAAAAATTTACTAATCAC+GGG | + | chr4.2:560717-560736 | MS.gene62616:intron | 20.0% |
| !! | ATAACAGTTAAGGTTTAAAA+AGG | + | chr4.2:560810-560829 | MS.gene62616:intron | 20.0% |
| !! | ATCAAAATAAAAATAGGGAA+GGG | - | chr4.2:559301-559320 | None:intergenic | 20.0% |
| !! | CACCAAAGAAAAATTAATTA+AGG | - | chr4.2:561579-561598 | None:intergenic | 20.0% |
| !! | TATCAAAATAAAAATAGGGA+AGG | - | chr4.2:559302-559321 | None:intergenic | 20.0% |
| !! | TGCATATAAAATATTGCTAA+AGG | + | chr4.2:560301-560320 | MS.gene62616:intron | 20.0% |
| !!! | ATTATTTTTCTTTTTGAAGG+AGG | + | chr4.2:559881-559900 | MS.gene62616:intron | 20.0% |
| !!! | CAAAAAAGTATGAAGTATTT+GGG | - | chr4.2:560093-560112 | None:intergenic | 20.0% |
| !!! | GTGATTAGTAAATTTTTGTT+AGG | - | chr4.2:560717-560736 | None:intergenic | 20.0% |
| !!! | TCAAAAAAGTATGAAGTATT+TGG | - | chr4.2:560094-560113 | None:intergenic | 20.0% |
| !!! | TTGTGATATTTTTTACAAAG+AGG | - | chr4.2:559702-559721 | None:intergenic | 20.0% |
| !!! | TTGTTTTGTAATTTTTAGCA+AGG | - | chr4.2:560409-560428 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTATATTGAATCC+TGG | + | chr4.2:559787-559806 | MS.gene62616:intron | 20.0% |
| !!! | TTTTCTTCTTATTATGTACA+CGG | + | chr4.2:559444-559463 | MS.gene62616:intron | 20.0% |
| ! | AAAAACTAGTTAACTAGGTA+TGG | - | chr4.2:559975-559994 | None:intergenic | 25.0% |
| ! | AAAAAGAGAGATATAAAGAC+TGG | + | chr4.2:560609-560628 | MS.gene62616:intron | 25.0% |
| ! | AAAAGAGAGATATAAAGACT+GGG | + | chr4.2:560610-560629 | MS.gene62616:intron | 25.0% |
| ! | CAAACAAAACCAATATGTAT+CGG | - | chr4.2:561657-561676 | None:intergenic | 25.0% |
| ! | TCAAAATAAAAATAGGGAAG+GGG | - | chr4.2:559300-559319 | None:intergenic | 25.0% |
| ! | TCAAAGAGATACATATTGAT+TGG | - | chr4.2:559062-559081 | None:intergenic | 25.0% |
| !! | AACATGCATGAATCTATTTT+CGG | + | chr4.2:559659-559678 | MS.gene62616:intron | 25.0% |
| !! | ATTTTTGTTAGGACTGATTA+AGG | - | chr4.2:560706-560725 | None:intergenic | 25.0% |
| !!! | ATTGTTCTCTTTAAAACAAG+TGG | - | chr4.2:560259-560278 | None:intergenic | 25.0% |
| !!! | CTTCAAGTTTCCATTTTTTA+AGG | + | chr4.2:559335-559354 | MS.gene62616:intron | 25.0% |
| !!! | GCATTTCTAAAATCAACAAT+CGG | - | chr4.2:559615-559634 | None:intergenic | 25.0% |
| !!! | GTATATGATCAAAGTTTTGA+TGG | + | chr4.2:559098-559117 | MS.gene62616:intron | 25.0% |
| !!! | TGATTTTAGAAATGCTTGTT+TGG | + | chr4.2:559620-559639 | MS.gene62616:intron | 25.0% |
| !!! | TTATAGAATTTTGGCTCTTT+TGG | - | chr4.2:561145-561164 | None:intergenic | 25.0% |
| !!! | TTCATGCATGTTGATTTTTT+TGG | - | chr4.2:559651-559670 | None:intergenic | 25.0% |
| !!! | TTCTCATATTTTTTGTAACC+TGG | - | chr4.2:560776-560795 | None:intergenic | 25.0% |
| !!! | TTTCTTGTTTTTGTGTTTTC+AGG | - | chr4.2:561319-561338 | None:intergenic | 25.0% |
| !!! | TTTTTTTGGATGACATACAA+TGG | + | chr4.2:559529-559548 | MS.gene62616:intron | 25.0% |
| AAAGAGAGATATAAAGACTG+GGG | + | chr4.2:560611-560630 | MS.gene62616:intron | 30.0% | |
| AAATTGTTGAAGGACAAAGA+AGG | - | chr4.2:558802-558821 | None:intergenic | 30.0% | |
| AAGGAGATTCTTCCATATAT+AGG | + | chr4.2:561607-561626 | MS.gene62616:CDS | 30.0% | |
| ACCTATGTCAATAACAGTTA+AGG | + | chr4.2:560800-560819 | MS.gene62616:intron | 30.0% | |
| ACCTTAACTGTTATTGACAT+AGG | - | chr4.2:560804-560823 | None:intergenic | 30.0% | |
| AGTGCAAAAACTAGTTAACT+AGG | - | chr4.2:559980-559999 | None:intergenic | 30.0% | |
| CGTTTGTTTGTGTAAATCAA+CGG | + | chr4.2:560516-560535 | MS.gene62616:intron | 30.0% | |
| GATCACAAAGAAATTGTTGA+AGG | - | chr4.2:558812-558831 | None:intergenic | 30.0% | |
| TTAAGGTTTAAAAAGGCGAA+TGG | + | chr4.2:560817-560836 | MS.gene62616:intron | 30.0% | |
| ! | GTTGATTTACACAAACAAAC+GGG | - | chr4.2:560517-560536 | None:intergenic | 30.0% |
| !! | AGATACACCAATTTTGAAGA+CGG | + | chr4.2:560136-560155 | MS.gene62616:intron | 30.0% |
| !! | CGTTGATTTACACAAACAAA+CGG | - | chr4.2:560518-560537 | None:intergenic | 30.0% |
| !! | TTTTGATTCTCTGATGTTTC+CGG | - | chr4.2:560980-560999 | None:intergenic | 30.0% |
| !!! | AATTTTGGCTCTTTTGGATA+TGG | - | chr4.2:561139-561158 | None:intergenic | 30.0% |
| !!! | AGTTAACTAGTTTTTGCACT+CGG | + | chr4.2:559980-559999 | MS.gene62616:intron | 30.0% |
| !!! | GTTTTTGTGTTTTCAGGTTT+GGG | - | chr4.2:561313-561332 | None:intergenic | 30.0% |
| !!! | TAATTTTTCTTTGGTGTTGC+AGG | + | chr4.2:561583-561602 | MS.gene62616:intron | 30.0% |
| !!! | TGTTTTTGTGTTTTCAGGTT+TGG | - | chr4.2:561314-561333 | None:intergenic | 30.0% |
| !!! | TTTCCATTTTTTAAGGATCG+TGG | + | chr4.2:559342-559361 | MS.gene62616:intron | 30.0% |
| AAGAGAGATATAAAGACTGG+GGG | + | chr4.2:560612-560631 | MS.gene62616:intron | 35.0% | |
| ACAAAACCAATATGTATCGG+TGG | - | chr4.2:561654-561673 | None:intergenic | 35.0% | |
| ACGATATAAAACAGACCTAG+TGG | + | chr4.2:560675-560694 | MS.gene62616:intron | 35.0% | |
| ACGGGCATGATTTATGTTAA+AGG | - | chr4.2:560499-560518 | None:intergenic | 35.0% | |
| ATATATAGGACCAAAACCAC+CGG | + | chr4.2:561621-561640 | MS.gene62616:CDS | 35.0% | |
| CAACCACGATCCTTAAAAAA+TGG | - | chr4.2:559348-559367 | None:intergenic | 35.0% | |
| CAACCATTTGTGACATGTTT+AGG | - | chr4.2:558958-558977 | None:intergenic | 35.0% | |
| CCTTATATATACCTCGCTTT+GGG | - | chr4.2:559390-559409 | None:intergenic | 35.0% | |
| GTTGGTATGTCTGTTTACTT+TGG | + | chr4.2:558931-558950 | MS.gene62616:CDS | 35.0% | |
| TAAAATCAACAATCGGCAAG+TGG | - | chr4.2:559608-559627 | None:intergenic | 35.0% | |
| TAAACAGACATACCAACAGA+TGG | - | chr4.2:558928-558947 | None:intergenic | 35.0% | |
| TCACTTATCAAGATGTTGCA+TGG | + | chr4.2:559491-559510 | MS.gene62616:intron | 35.0% | |
| TCCTTATATATACCTCGCTT+TGG | - | chr4.2:559391-559410 | None:intergenic | 35.0% | |
| TTAAAGTAGACTGTAGCTAC+AGG | - | chr4.2:561772-561791 | None:intergenic | 35.0% | |
| TTATATCGTTGTATCCCCTT+TGG | - | chr4.2:560664-560683 | None:intergenic | 35.0% | |
| TTTGATTCTCTGATGTTTCC+GGG | - | chr4.2:560979-560998 | None:intergenic | 35.0% | |
| TTTGCAAGTCAATTGAACCT+TGG | + | chr4.2:561742-561761 | MS.gene62616:CDS | 35.0% | |
| ! | TAGGTGGTTACTGTTTGTTT+TGG | - | chr4.2:561259-561278 | None:intergenic | 35.0% |
| !! | GATACACCAATTTTGAAGAC+GGG | + | chr4.2:560137-560156 | MS.gene62616:intron | 35.0% |
| !!! | ATTGGTTTTGTTTGAGCAGA+AGG | + | chr4.2:561663-561682 | MS.gene62616:CDS | 35.0% |
| !!! | GGTTTTGTTAAAACCCGAAA+GGG | - | chr4.2:561088-561107 | None:intergenic | 35.0% |
| !!! | TGGTTTTGTTAAAACCCGAA+AGG | - | chr4.2:561089-561108 | None:intergenic | 35.0% |
| !!! | TGTCTGAATCTGGTTTTGTT+TGG | - | chr4.2:561014-561033 | None:intergenic | 35.0% |
| !!! | TTACTGTTTGTTTTGGCTGA+TGG | - | chr4.2:561252-561271 | None:intergenic | 35.0% |
| !!! | TTGGTTTTGTTTGAGCAGAA+GGG | + | chr4.2:561664-561683 | MS.gene62616:CDS | 35.0% |
| AAGACACCCGTCTTCAAAAT+TGG | - | chr4.2:560146-560165 | None:intergenic | 40.0% | |
| AGAGAGATATAAAGACTGGG+GGG | + | chr4.2:560613-560632 | MS.gene62616:intron | 40.0% | |
| AGCACTAAATACCAGTGTGT+AGG | + | chr4.2:560916-560935 | MS.gene62616:intron | 40.0% | |
| AGTCTACTTTAACTCCCAGA+AGG | + | chr4.2:561780-561799 | MS.gene62616:CDS | 40.0% | |
| AGTGTGAGAAGCTCATTTGT+TGG | - | chr4.2:559768-559787 | None:intergenic | 40.0% | |
| CCCAAAGCGAGGTATATATA+AGG | + | chr4.2:559387-559406 | MS.gene62616:intron | 40.0% | |
| GACATGTTCATTCCATCTGT+TGG | + | chr4.2:558913-558932 | MS.gene62616:CDS | 40.0% | |
| GATCTTGTGCATTGTCTTTG+TGG | + | chr4.2:558828-558847 | MS.gene62616:CDS | 40.0% | |
| GGTCCTAAACATGTCACAAA+TGG | + | chr4.2:558952-558971 | MS.gene62616:CDS | 40.0% | |
| TGGAAGACAACATTGAATCC+AGG | - | chr4.2:559808-559827 | None:intergenic | 40.0% | |
| TGGTATCCACCGATACATAT+TGG | + | chr4.2:561645-561664 | MS.gene62616:CDS | 40.0% | |
| TGTCTTTGTGGTGATCATGA+TGG | + | chr4.2:558840-558859 | MS.gene62616:CDS | 40.0% | |
| TTAACAAAACCAGACCCTCA+CGG | + | chr4.2:561097-561116 | MS.gene62616:intron | 40.0% | |
| TTGTGACATAAAGCCATCCA+TGG | + | chr4.2:558975-558994 | MS.gene62616:CDS | 40.0% | |
| ! | AGTGTTGAAACTGACTCTAC+TGG | - | chr4.2:561716-561735 | None:intergenic | 40.0% |
| ! | CATTTGTTGGATTGAAGCAG+TGG | - | chr4.2:559755-559774 | None:intergenic | 40.0% |
| ! | CTGATTAAGGTTGATCCACT+AGG | - | chr4.2:560693-560712 | None:intergenic | 40.0% |
| ! | CTGGGGTGGTTATAGAATTT+TGG | - | chr4.2:561154-561173 | None:intergenic | 40.0% |
| ! | GGATTTTGTTACCGTGTTGA+CGG | - | chr4.2:560848-560867 | None:intergenic | 40.0% |
| ! | TCGGATTTTCATGACGTTTC+TGG | - | chr4.2:561458-561477 | None:intergenic | 40.0% |
| ! | TGGCTCTTTTGGATATGGTT+TGG | - | chr4.2:561134-561153 | None:intergenic | 40.0% |
| ! | TGGTTTCTAAAAACCCGTGA+GGG | - | chr4.2:561114-561133 | None:intergenic | 40.0% |
| ! | TTGAAACTGACTCTACTGGT+TGG | - | chr4.2:561712-561731 | None:intergenic | 40.0% |
| ! | TTGGTTTCTAAAAACCCGTG+AGG | - | chr4.2:561115-561134 | None:intergenic | 40.0% |
| ! | TTTGCTTGCTGCTTAGTTCA+GGG | - | chr4.2:560885-560904 | None:intergenic | 40.0% |
| !! | TTTCTTTGGTGTTGCAGGAA+AGG | + | chr4.2:561588-561607 | MS.gene62616:intron | 40.0% |
| !! | TTTTGCTTGCTGCTTAGTTC+AGG | - | chr4.2:560886-560905 | None:intergenic | 40.0% |
| !!! | GGTGGTTTTGGTCCTATATA+TGG | - | chr4.2:561622-561641 | None:intergenic | 40.0% |
| AAATCAAGCTCCTTCACCAC+CGG | + | chr4.2:561361-561380 | MS.gene62616:intron | 45.0% | |
| AACATACCAGACCCAACATC+CGG | + | chr4.2:561207-561226 | MS.gene62616:intron | 45.0% | |
| ACGCGTAAGAACTCAGATCA+AGG | + | chr4.2:561035-561054 | MS.gene62616:intron | 45.0% | |
| ACGTTTCCTGTGTGACACAT+TGG | - | chr4.2:560235-560254 | None:intergenic | 45.0% | |
| AGATCATCACACGTAGCATG+TGG | + | chr4.2:560172-560191 | MS.gene62616:intron | 45.0% | |
| ATCCCCTTTGGATTGTACCT+GGG | - | chr4.2:560652-560671 | None:intergenic | 45.0% | |
| CATGGATAACCTCTACACTC+TGG | + | chr4.2:559032-559051 | MS.gene62616:CDS | 45.0% | |
| CGCGTAAGAACTCAGATCAA+GGG | + | chr4.2:561036-561055 | MS.gene62616:intron | 45.0% | |
| CGTTAGTAACCAGACCCTTT+CGG | + | chr4.2:561071-561090 | MS.gene62616:intron | 45.0% | |
| GAATGGATCAACCGTCAACA+CGG | + | chr4.2:560834-560853 | MS.gene62616:intron | 45.0% | |
| GCTTGATTTCAGCGTGGTAA+AGG | - | chr4.2:561350-561369 | None:intergenic | 45.0% | |
| GGGTCTGGTTACTAACGTAT+TGG | - | chr4.2:561068-561087 | None:intergenic | 45.0% | |
| GTTAGTAACCAGACCCTTTC+GGG | + | chr4.2:561072-561091 | MS.gene62616:intron | 45.0% | |
| TAACAAAACCAGACCCTCAC+GGG | + | chr4.2:561098-561117 | MS.gene62616:intron | 45.0% | |
| TATCCCCTTTGGATTGTACC+TGG | - | chr4.2:560653-560672 | None:intergenic | 45.0% | |
| TCAGCGTGGTAAAGGTTATG+TGG | - | chr4.2:561342-561361 | None:intergenic | 45.0% | |
| TCATGACCAATGTGTCACAC+AGG | + | chr4.2:560226-560245 | MS.gene62616:intron | 45.0% | |
| TGACCCAGGTACAATCCAAA+GGG | + | chr4.2:560646-560665 | MS.gene62616:intron | 45.0% | |
| TGCTACGTGTGATGATCTCA+AGG | - | chr4.2:560170-560189 | None:intergenic | 45.0% | |
| TGGATTGAAGCAGTGGAACA+AGG | - | chr4.2:559748-559767 | None:intergenic | 45.0% | |
| TGTATCAGCTCACGCATGTT+TGG | - | chr4.2:559188-559207 | None:intergenic | 45.0% | |
| TGTTAAAACCCGAAAGGGTC+TGG | - | chr4.2:561083-561102 | None:intergenic | 45.0% | |
| TTTCCAGTGAGAGTGACCTT+GGG | - | chr4.2:559012-559031 | None:intergenic | 45.0% | |
| TTTGAGCAGAAGGGACCAAT+AGG | + | chr4.2:561673-561692 | MS.gene62616:CDS | 45.0% | |
| ! | ATGTATCGGTGGATACCAAC+CGG | - | chr4.2:561643-561662 | None:intergenic | 45.0% |
| ! | GTTGTTCGTGATCTGAGACT+GGG | - | chr4.2:561172-561191 | None:intergenic | 45.0% |
| ! | TGGCTTGCATGTCACAAAAG+TGG | + | chr4.2:560192-560211 | MS.gene62616:intron | 45.0% |
| ! | TGTTGTTCGTGATCTGAGAC+TGG | - | chr4.2:561173-561192 | None:intergenic | 45.0% |
| ! | TTGTTCGTGATCTGAGACTG+GGG | - | chr4.2:561171-561190 | None:intergenic | 45.0% |
| !! | CATGACGTTTCTGGTTCTGT+TGG | - | chr4.2:561449-561468 | None:intergenic | 45.0% |
| !!! | CTGTTTGTTTTGGCTGATGG+TGG | - | chr4.2:561249-561268 | None:intergenic | 45.0% |
| !!! | TGTTTTCAGGTTTGGGTTGC+TGG | - | chr4.2:561306-561325 | None:intergenic | 45.0% |
| AAACGGACGAACAGAGCAAC+CGG | + | chr4.2:561393-561412 | MS.gene62616:intron | 50.0% | |
| AACCACCAAAGGATCAACCG+AGG | - | chr4.2:558869-558888 | None:intergenic | 50.0% | |
| ACATGCGTGAGCTGATACAC+TGG | + | chr4.2:559189-559208 | MS.gene62616:CDS | 50.0% | |
| AGGATCGTGGTTGACATTCC+TGG | + | chr4.2:559355-559374 | MS.gene62616:intron | 50.0% | |
| ATAGGACCAAAACCACCGGT+TGG | + | chr4.2:561625-561644 | MS.gene62616:CDS | 50.0% | |
| ATAGGTGGAACTGCTGTAGG+TGG | - | chr4.2:561275-561294 | None:intergenic | 50.0% | |
| ATCACACGACCAACCACCAA+AGG | - | chr4.2:558880-558899 | None:intergenic | 50.0% | |
| ATCGTGGTTGACATTCCTGG+AGG | + | chr4.2:559358-559377 | MS.gene62616:CDS | 50.0% | |
| ATTGGCTGACCAGAGTGTAG+AGG | - | chr4.2:559044-559063 | None:intergenic | 50.0% | |
| CTGACCCAGGTACAATCCAA+AGG | + | chr4.2:560645-560664 | MS.gene62616:intron | 50.0% | |
| CTGTAGCTACAGGAAGACCA+AGG | - | chr4.2:561762-561781 | None:intergenic | 50.0% | |
| CTTACGCGTCTGTCTGAATC+TGG | - | chr4.2:561024-561043 | None:intergenic | 50.0% | |
| CTTTGGATTGTACCTGGGTC+AGG | - | chr4.2:560647-560666 | None:intergenic | 50.0% | |
| GAAGCACGCACGAATAGACT+TGG | - | chr4.2:561481-561500 | None:intergenic | 50.0% | |
| GAAGGAGCTTGATTTCAGCG+TGG | - | chr4.2:561356-561375 | None:intergenic | 50.0% | |
| GACCCAGGTACAATCCAAAG+GGG | + | chr4.2:560647-560666 | MS.gene62616:intron | 50.0% | |
| GCAGAAGGGACCAATAGGAA+TGG | + | chr4.2:561678-561697 | MS.gene62616:CDS | 50.0% | |
| GGCTGCTCAACCATTCCTAT+TGG | - | chr4.2:561691-561710 | None:intergenic | 50.0% | |
| GGTCACTCTCACTGGAAACA+TGG | + | chr4.2:559014-559033 | MS.gene62616:CDS | 50.0% | |
| GTTTCCAGTGAGAGTGACCT+TGG | - | chr4.2:559013-559032 | None:intergenic | 50.0% | |
| TCGATAGGTGGAACTGCTGT+AGG | - | chr4.2:561278-561297 | None:intergenic | 50.0% | |
| TCTAAAAACCCGTGAGGGTC+TGG | - | chr4.2:561109-561128 | None:intergenic | 50.0% | |
| TGCTTAGTTCAGGGAGCTGT+TGG | - | chr4.2:560876-560895 | None:intergenic | 50.0% | |
| ! | CACGCACGAATAGACTTGGT+CGG | - | chr4.2:561477-561496 | None:intergenic | 50.0% |
| ! | TCACGCATGTTTGGCTCACT+GGG | - | chr4.2:559179-559198 | None:intergenic | 50.0% |
| ! | TCGGTTGATCCTTTGGTGGT+TGG | + | chr4.2:558868-558887 | MS.gene62616:CDS | 50.0% |
| ! | TGGATACCAACCGGTGGTTT+TGG | - | chr4.2:561634-561653 | None:intergenic | 50.0% |
| ! | TTGGTGGTTGGTCGTGTGAT+TGG | + | chr4.2:558880-558899 | MS.gene62616:CDS | 50.0% |
| !! | TCAGGTTTGGGTTGCTGGTT+CGG | - | chr4.2:561301-561320 | None:intergenic | 50.0% |
| !!! | TTTTGGCTGATGGTGGTGTG+TGG | - | chr4.2:561242-561261 | None:intergenic | 50.0% |
| AAGCTCCTTCACCACCGGAA+CGG | + | chr4.2:561366-561385 | MS.gene62616:intron | 55.0% | |
| ACCACCGGAACGGAAGGAAA+CGG | + | chr4.2:561376-561395 | MS.gene62616:intron | 55.0% | |
| AGAAGGAGCCTCAGGCTAAG+AGG | + | chr4.2:561797-561816 | MS.gene62616:CDS | 55.0% | |
| AGAGCAACCGGTCCAACAAC+CGG | + | chr4.2:561405-561424 | MS.gene62616:intron | 55.0% | |
| CAGTGAGAGTGACCTTGGGT+GGG | - | chr4.2:559008-559027 | None:intergenic | 55.0% | |
| CATGCAGCACAGGTGGAAGA+TGG | - | chr4.2:559828-559847 | None:intergenic | 55.0% | |
| CATGGCTATCAACCCACCCA+AGG | + | chr4.2:558993-559012 | MS.gene62616:CDS | 55.0% | |
| CCTGCAGATCTCAACAGACC+CGG | + | chr4.2:560958-560977 | MS.gene62616:intron | 55.0% | |
| CTTAGCCTGAGGCTCCTTCT+GGG | - | chr4.2:561797-561816 | None:intergenic | 55.0% | |
| GGAGGAACAAACCCAAAGCG+AGG | + | chr4.2:559376-559395 | MS.gene62616:CDS | 55.0% | |
| GGGGACATAAAACCTGACCC+AGG | + | chr4.2:560632-560651 | MS.gene62616:intron | 55.0% | |
| GGTGATCATGATGGCTGCCT+CGG | + | chr4.2:558849-558868 | MS.gene62616:CDS | 55.0% | |
| GGTGTGTGCTACCGGATGTT+GGG | - | chr4.2:561221-561240 | None:intergenic | 55.0% | |
| GTTTGCAGCGAAGCCAGATC+CGG | - | chr4.2:561427-561446 | None:intergenic | 55.0% | |
| TAACTCCCAGAAGGAGCCTC+AGG | + | chr4.2:561789-561808 | MS.gene62616:CDS | 55.0% | |
| TATCGGTGGATACCAACCGG+TGG | - | chr4.2:561640-561659 | None:intergenic | 55.0% | |
| TCGTCCGTTTCCTTCCGTTC+CGG | - | chr4.2:561383-561402 | None:intergenic | 55.0% | |
| TCTTAGCCTGAGGCTCCTTC+TGG | - | chr4.2:561798-561817 | None:intergenic | 55.0% | |
| TCTTCCACCTGTGCTGCATG+TGG | + | chr4.2:559828-559847 | MS.gene62616:intron | 55.0% | |
| TGCCTCGGTTGATCCTTTGG+TGG | + | chr4.2:558864-558883 | MS.gene62616:CDS | 55.0% | |
| TGGTGTGTGCTACCGGATGT+TGG | - | chr4.2:561222-561241 | None:intergenic | 55.0% | |
| TGGTGTGTGGTGTGTGCTAC+CGG | - | chr4.2:561229-561248 | None:intergenic | 55.0% | |
| TTCAGGGAGCTGTTGGCACT+TGG | - | chr4.2:560869-560888 | None:intergenic | 55.0% | |
| ! | ATGTTTGGCTCACTGGGGCT+TGG | - | chr4.2:559173-559192 | None:intergenic | 55.0% |
| ! | CACGCATGTTTGGCTCACTG+GGG | - | chr4.2:559178-559197 | None:intergenic | 55.0% |
| ! | CGCTTTGGGTTTGTTCCTCC+AGG | - | chr4.2:559376-559395 | None:intergenic | 55.0% |
| ! | CGTCTTGTTCGCCTACACAC+TGG | - | chr4.2:560930-560949 | None:intergenic | 55.0% |
| ! | CTCACGCATGTTTGGCTCAC+TGG | - | chr4.2:559180-559199 | None:intergenic | 55.0% |
| ! | TTCGTGATCTGAGACTGGGG+TGG | - | chr4.2:561168-561187 | None:intergenic | 55.0% |
| !! | CTTGGGTGGGTTGATAGCCA+TGG | - | chr4.2:558995-559014 | None:intergenic | 55.0% |
| !! | GGTGGGTTGATAGCCATGGA+TGG | - | chr4.2:558991-559010 | None:intergenic | 55.0% |
| !! | TTGCTGGTTCGGTCGATAGG+TGG | - | chr4.2:561290-561309 | None:intergenic | 55.0% |
| AAACCAGCGAACCCGCGTAC+GGG | + | chr4.2:560743-560762 | MS.gene62616:intron | 60.0% | |
| ACCGGTCCAACAACCGGATC+TGG | + | chr4.2:561411-561430 | MS.gene62616:intron | 60.0% | |
| ATAGCCGCCACATGCAGCAC+AGG | - | chr4.2:559838-559857 | None:intergenic | 60.0% | |
| CAAACCAGCGAACCCGCGTA+CGG | + | chr4.2:560742-560761 | MS.gene62616:intron | 60.0% | |
| CCACCCAAGGTCACTCTCAC+TGG | + | chr4.2:559006-559025 | MS.gene62616:CDS | 60.0% | |
| CCAGTGAGAGTGACCTTGGG+TGG | - | chr4.2:559009-559028 | None:intergenic | 60.0% | |
| CCGGGTCTGTTGAGATCTGC+AGG | - | chr4.2:560961-560980 | None:intergenic | 60.0% | |
| GCCAGATCCGGTTGTTGGAC+CGG | - | chr4.2:561415-561434 | None:intergenic | 60.0% | |
| GCGAAGCCAGATCCGGTTGT+TGG | - | chr4.2:561420-561439 | None:intergenic | 60.0% | |
| GGCTGCCTCGGTTGATCCTT+TGG | + | chr4.2:558861-558880 | MS.gene62616:CDS | 60.0% | |
| GTGCTACCGGATGTTGGGTC+TGG | - | chr4.2:561216-561235 | None:intergenic | 60.0% | |
| TCCACCTGTGCTGCATGTGG+CGG | + | chr4.2:559831-559850 | MS.gene62616:intron | 60.0% | |
| TCCGTTTCCTTCCGTTCCGG+TGG | - | chr4.2:561380-561399 | None:intergenic | 60.0% | |
| TCCTTCACCACCGGAACGGA+AGG | + | chr4.2:561370-561389 | MS.gene62616:intron | 60.0% | |
| TCCTTCCGTTCCGGTGGTGA+AGG | - | chr4.2:561374-561393 | None:intergenic | 60.0% | |
| !! | GGGTTGCTGGTTCGGTCGAT+AGG | - | chr4.2:561293-561312 | None:intergenic | 60.0% |
| !! | TCACTGGGGCTTGGTGCATC+TGG | - | chr4.2:559164-559183 | None:intergenic | 60.0% |
| CCTGGTTTCGCGCCCGTACG+CGG | - | chr4.2:560758-560777 | None:intergenic | 70.0% | |
| CTGGTTTCGCGCCCGTACGC+GGG | - | chr4.2:560757-560776 | None:intergenic | 70.0% | |
| GCCGCCACATGCAGCACAGG+TGG | - | chr4.2:559835-559854 | None:intergenic | 70.0% | |
| CCGCGTACGGGCGCGAAACC+AGG | + | chr4.2:560755-560774 | MS.gene62616:intron | 75.0% | |
| ! | GCGCCCGTACGCGGGTTCGC+TGG | - | chr4.2:560749-560768 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 558796 | 561825 | 558796 | ID=MS.gene62616 |
| chr4.2 | mRNA | 558796 | 561825 | 558796 | ID=MS.gene62616.t1;Parent=MS.gene62616 |
| chr4.2 | exon | 558796 | 559053 | 558796 | ID=MS.gene62616.t1.exon1;Parent=MS.gene62616.t1 |
| chr4.2 | CDS | 558796 | 559053 | 558796 | ID=cds.MS.gene62616.t1;Parent=MS.gene62616.t1 |
| chr4.2 | exon | 559149 | 559210 | 559149 | ID=MS.gene62616.t1.exon2;Parent=MS.gene62616.t1 |
| chr4.2 | CDS | 559149 | 559210 | 559149 | ID=cds.MS.gene62616.t1;Parent=MS.gene62616.t1 |
| chr4.2 | exon | 559357 | 559397 | 559357 | ID=MS.gene62616.t1.exon3;Parent=MS.gene62616.t1 |
| chr4.2 | CDS | 559357 | 559397 | 559357 | ID=cds.MS.gene62616.t1;Parent=MS.gene62616.t1 |
| chr4.2 | exon | 561605 | 561825 | 561605 | ID=MS.gene62616.t1.exon4;Parent=MS.gene62616.t1 |
| chr4.2 | CDS | 561605 | 561825 | 561605 | ID=cds.MS.gene62616.t1;Parent=MS.gene62616.t1 |
| Gene Sequence |
| Protein sequence |
