Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62888.t1 | XP_003608731.1 | 98.3 | 301 | 5 | 0 | 1 | 301 | 50 | 350 | 1.50E-160 | 575.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62888.t1 | P22989 | 66.2 | 302 | 101 | 1 | 1 | 301 | 43 | 344 | 7.0e-111 | 401.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62888.t1 | G7JIY5 | 98.3 | 301 | 5 | 0 | 1 | 301 | 50 | 350 | 1.1e-160 | 575.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04991 | MS.gene62888 | 0.827279 | 1.71E-54 | -1.69E-46 |
| MS.gene051122 | MS.gene62888 | -0.810336 | 1.21E-50 | -1.69E-46 |
| MS.gene052965 | MS.gene62888 | 0.81825 | 2.16E-52 | -1.69E-46 |
| MS.gene055505 | MS.gene62888 | -0.801193 | 1.01E-48 | -1.69E-46 |
| MS.gene055701 | MS.gene62888 | -0.829881 | 4.02E-55 | -1.69E-46 |
| MS.gene05761 | MS.gene62888 | -0.807098 | 5.97E-50 | -1.69E-46 |
| MS.gene059511 | MS.gene62888 | -0.811438 | 7.00E-51 | -1.69E-46 |
| MS.gene060851 | MS.gene62888 | -0.816277 | 6.01E-52 | -1.69E-46 |
| MS.gene060852 | MS.gene62888 | -0.817898 | 2.60E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62888.t1 | MTR_4g101130 | 98.339 | 301 | 5 | 0 | 1 | 301 | 50 | 350 | 0.0 | 601 |
| MS.gene62888.t1 | MTR_5g012390 | 85.714 | 301 | 43 | 0 | 1 | 301 | 50 | 350 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62888.t1 | AT4G17260 | 80.066 | 301 | 60 | 0 | 1 | 301 | 53 | 353 | 0.0 | 508 |
| MS.gene62888.t1 | AT2G22780 | 24.111 | 253 | 172 | 7 | 56 | 301 | 110 | 349 | 3.50e-11 | 63.5 |
Find 105 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGGCGCGTTCCATTATT+AGG | 0.155648 | 8.3:-20047094 | MS.gene62888:CDS |
| TACATCGCATGGAAGCTTTC+TGG | 0.223266 | 8.3:-20048296 | MS.gene62888:CDS |
| GTCTAAAAGGTTACACTTCT+TGG | 0.242478 | 8.3:-20047139 | MS.gene62888:CDS |
| CATCGGGTCGGGTACCAATT+TGG | 0.245882 | 8.3:-20048255 | MS.gene62888:CDS |
| TTTCCTTTGGTCCCTAATAA+TGG | 0.266030 | 8.3:+20047082 | None:intergenic |
| GAGGAATCTTTCTCTGTTCC+AGG | 0.273770 | 8.3:-20048396 | MS.gene62888:CDS |
| AATTCACCCTGTGTCTGTTT+TGG | 0.299725 | 8.3:-20047060 | MS.gene62888:CDS |
| TTTCTGGGTTTCCTTCTAAT+CGG | 0.317162 | 8.3:-20048280 | MS.gene62888:CDS |
| TATGAAGTCATCAGTCTAAA+AGG | 0.318657 | 8.3:-20047152 | MS.gene62888:CDS |
| CTTGGCGCGTTCCATTATTA+GGG | 0.327453 | 8.3:-20047093 | MS.gene62888:CDS |
| ATTTGGATTCATCTCGGTTT+CGG | 0.328348 | 8.3:-20048238 | MS.gene62888:CDS |
| GCCATTGGGTACTCGGTGGC+TGG | 0.359042 | 8.3:-20047116 | MS.gene62888:CDS |
| TTTAAATACCCAACTGAGTC+TGG | 0.359309 | 8.3:+20046886 | None:intergenic |
| ACATCGCATGGAAGCTTTCT+GGG | 0.367928 | 8.3:-20048295 | MS.gene62888:CDS |
| GACCCGATGACCCGATTAGA+AGG | 0.368385 | 8.3:+20048269 | None:intergenic |
| GGATTCTGCTAAAACTATCT+TGG | 0.379469 | 8.3:-20046913 | MS.gene62888:CDS |
| TGGGTACTCGGTGGCTGGCT+TGG | 0.388620 | 8.3:-20047111 | MS.gene62888:CDS |
| AAACCGAGATGAATCCAAAT+TGG | 0.390309 | 8.3:+20048241 | None:intergenic |
| CATCTCGCCGCGGAGTTTGT+CGG | 0.392604 | 8.3:+20048565 | None:intergenic |
| TTCCTTCTAATCGGGTCATC+GGG | 0.399644 | 8.3:-20048271 | MS.gene62888:CDS |
| CCTCCTCTTCCAAGCTGTGC+TGG | 0.408953 | 8.3:+20046990 | None:intergenic |
| ATCTCGCCGCGGAGTTTGTC+GGG | 0.409424 | 8.3:+20048566 | None:intergenic |
| ATGAGGAGGAACAAAGGCTT+AGG | 0.410444 | 8.3:-20046935 | MS.gene62888:CDS |
| GGTCAACGCTCAGGATGTTC+AGG | 0.411810 | 8.3:-20048192 | MS.gene62888:intron |
| TTCTTGGGCCATTGGGTACT+CGG | 0.413662 | 8.3:-20047123 | MS.gene62888:CDS |
| TCTAATCGGGTCATCGGGTC+GGG | 0.422317 | 8.3:-20048266 | MS.gene62888:CDS |
| TTCTGGGTTTCCTTCTAATC+GGG | 0.423028 | 8.3:-20048279 | MS.gene62888:CDS |
| ATGTAGGTAAGAACATCAAC+GGG | 0.425256 | 8.3:+20048314 | None:intergenic |
| TTTCCTTCTAATCGGGTCAT+CGG | 0.428046 | 8.3:-20048272 | MS.gene62888:CDS |
| GGTTACACTTCTTGGGCCAT+TGG | 0.429243 | 8.3:-20047131 | MS.gene62888:CDS |
| ACGATGATCAGAACCGTTTC+CGG | 0.432903 | 8.3:+20048344 | None:intergenic |
| TCTAAAAGGTTACACTTCTT+GGG | 0.435111 | 8.3:-20047138 | MS.gene62888:CDS |
| CGTCGGTGAGGTCTTGAGTT+AGG | 0.435609 | 8.3:+20048612 | None:intergenic |
| GGCTCGTTACTCGCCGGAAA+CGG | 0.437337 | 8.3:-20048357 | MS.gene62888:CDS |
| TTCTAATCGGGTCATCGGGT+CGG | 0.439376 | 8.3:-20048267 | MS.gene62888:CDS |
| GTTACACTTCTTGGGCCATT+GGG | 0.447787 | 8.3:-20047130 | MS.gene62888:CDS |
| CATGCATAGTAGGGGAGCAC+GGG | 0.454511 | 8.3:-20047307 | MS.gene62888:CDS |
| TTGGTGCAGGCATGCATAGT+AGG | 0.460381 | 8.3:-20047317 | MS.gene62888:intron |
| GAACATCCTGAGCGTTGACC+TGG | 0.466613 | 8.3:+20048195 | None:intergenic |
| CTTGGAAGAGGAGGGGTGCT+TGG | 0.474117 | 8.3:-20046981 | MS.gene62888:CDS |
| GAGATCGGAGCCAGCAGTAA+CGG | 0.484502 | 8.3:+20048478 | None:intergenic |
| TGGTGCAGGCATGCATAGTA+GGG | 0.501326 | 8.3:-20047316 | MS.gene62888:intron |
| ACCGATCTGCCTTGCACCGG+CGG | 0.505308 | 8.3:+20048445 | None:intergenic |
| TTGGAGGTCCAGACTCAGTT+GGG | 0.507271 | 8.3:-20046894 | MS.gene62888:CDS |
| CCTCATTGCTGATCACCTCC+AGG | 0.512139 | 8.3:-20048213 | MS.gene62888:CDS |
| GTTGAATACTCCGTTACTGC+TGG | 0.512854 | 8.3:-20048488 | MS.gene62888:CDS |
| GCATGCATAGTAGGGGAGCA+CGG | 0.515411 | 8.3:-20047308 | MS.gene62888:CDS |
| CTCATTATTCATGTGCACAT+TGG | 0.516320 | 8.3:+20046953 | None:intergenic |
| GTATTGTCACCGCCGGTGCA+AGG | 0.516525 | 8.3:-20048454 | MS.gene62888:CDS |
| TCACCTCCAGGTCAACGCTC+AGG | 0.517562 | 8.3:-20048201 | MS.gene62888:CDS |
| CCCTTTGGCTCGTTACTCGC+CGG | 0.519160 | 8.3:-20048363 | MS.gene62888:CDS |
| TGGTCTAGCATCAGCATTGG+TGG | 0.521752 | 8.3:-20047266 | MS.gene62888:CDS |
| TGAGGAGGAACAAAGGCTTA+GGG | 0.530899 | 8.3:-20046934 | MS.gene62888:CDS |
| TTGCCAGCACAGCTTGGAAG+AGG | 0.536651 | 8.3:-20046993 | MS.gene62888:CDS |
| CTTGGAGGTCCAGACTCAGT+TGG | 0.544227 | 8.3:-20046895 | MS.gene62888:CDS |
| TTCTGCTAAAACTATCTTGG+AGG | 0.545697 | 8.3:-20046910 | MS.gene62888:CDS |
| CCGGCGAGTAACGAGCCAAA+GGG | 0.546843 | 8.3:+20048363 | None:intergenic |
| ACCGCCGGTGCAAGGCAGAT+CGG | 0.553456 | 8.3:-20048446 | MS.gene62888:CDS |
| ATGTTCTTACCTACATCGCA+TGG | 0.553838 | 8.3:-20048307 | MS.gene62888:CDS |
| CCAGCACAGCTTGGAAGAGG+AGG | 0.555853 | 8.3:-20046990 | MS.gene62888:CDS |
| CCCTTAGCCAAAACAGACAC+AGG | 0.556926 | 8.3:+20047053 | None:intergenic |
| GGCAGATCGGTGGTGAGTCT+AGG | 0.557502 | 8.3:-20048433 | MS.gene62888:CDS |
| TGCATATGAGAAAGAAACGC+TGG | 0.561783 | 8.3:-20047207 | MS.gene62888:CDS |
| CAGCACAGCTTGGAAGAGGA+GGG | 0.569000 | 8.3:-20046989 | MS.gene62888:CDS |
| GGTAAGAACATCAACGGGGT+TGG | 0.569302 | 8.3:+20048319 | None:intergenic |
| TTGAGCTTGCCAGCACAGCT+TGG | 0.573311 | 8.3:-20046999 | MS.gene62888:CDS |
| AGAAAGCTTCCATGCGATGT+AGG | 0.573366 | 8.3:+20048298 | None:intergenic |
| GTACCAATTTGGATTCATCT+CGG | 0.575971 | 8.3:-20048244 | MS.gene62888:CDS |
| TCCGGCGAGTAACGAGCCAA+AGG | 0.577653 | 8.3:+20048362 | None:intergenic |
| GGTGAGGTCTTGAGTTAGGA+TGG | 0.578230 | 8.3:+20048616 | None:intergenic |
| AGTTAGGATGGTCTGAGCAA+TGG | 0.584206 | 8.3:+20048628 | None:intergenic |
| AGCACAGCTTGGAAGAGGAG+GGG | 0.586218 | 8.3:-20046988 | MS.gene62888:CDS |
| GGCGGTGACAATACAGAGAT+CGG | 0.590044 | 8.3:+20048463 | None:intergenic |
| TTGTGGTCTAGCATCAGCAT+TGG | 0.596257 | 8.3:-20047269 | MS.gene62888:CDS |
| ACCACCGATCTGCCTTGCAC+CGG | 0.601852 | 8.3:+20048442 | None:intergenic |
| TGAATAATGAGGAGGAACAA+AGG | 0.605881 | 8.3:-20046941 | MS.gene62888:CDS |
| GGGATAGTTCAGTGGCATTG+TGG | 0.607315 | 8.3:-20047286 | MS.gene62888:CDS |
| CAATGTGCACATGAATAATG+AGG | 0.607609 | 8.3:-20046952 | MS.gene62888:CDS |
| CTAGGCTTAATCTTCTTCAG+AGG | 0.607829 | 8.3:-20048415 | MS.gene62888:CDS |
| GCCAGCCACCGAGTACCCAA+TGG | 0.611646 | 8.3:+20047115 | None:intergenic |
| CGGAGGAGTTGATCTTAACA+CGG | 0.616884 | 8.3:+20048510 | None:intergenic |
| GCCGGTGCAAGGCAGATCGG+TGG | 0.633288 | 8.3:-20048443 | MS.gene62888:CDS |
| AGTTGATCTTAACACGGGGA+AGG | 0.633694 | 8.3:+20048516 | None:intergenic |
| GTTCCATTATTAGGGACCAA+AGG | 0.633706 | 8.3:-20047085 | MS.gene62888:CDS |
| AGCAGTAACGGAGTATTCAA+CGG | 0.634943 | 8.3:+20048490 | None:intergenic |
| GATGTAGGTAAGAACATCAA+CGG | 0.637519 | 8.3:+20048313 | None:intergenic |
| GGAGGAGTTGATCTTAACAC+GGG | 0.638442 | 8.3:+20048511 | None:intergenic |
| GATCTCTGTATTGTCACCGC+CGG | 0.642113 | 8.3:-20048461 | MS.gene62888:CDS |
| CGATGACGAGCTCGTCGGTG+AGG | 0.651455 | 8.3:+20048600 | None:intergenic |
| AACAAACCCGACAAACTCCG+CGG | 0.654627 | 8.3:-20048572 | MS.gene62888:CDS |
| GGCGAGTAACGAGCCAAAGG+GGG | 0.657545 | 8.3:+20048365 | None:intergenic |
| CCTGGAGGTGATCAGCAATG+AGG | 0.659064 | 8.3:+20048213 | None:intergenic |
| ATGCATAGTAGGGGAGCACG+GGG | 0.668532 | 8.3:-20047306 | MS.gene62888:CDS |
| TTGGGCCATTGGGTACTCGG+TGG | 0.669464 | 8.3:-20047120 | MS.gene62888:CDS |
| CGGCGAGTAACGAGCCAAAG+GGG | 0.669624 | 8.3:+20048364 | None:intergenic |
| CCTTAGCCAAAACAGACACA+GGG | 0.678012 | 8.3:+20047054 | None:intergenic |
| GTCGACGATGACGAGCTCGT+CGG | 0.681636 | 8.3:+20048595 | None:intergenic |
| TGTGCACATGAATAATGAGG+AGG | 0.692647 | 8.3:-20046949 | MS.gene62888:CDS |
| GGAGCACGGGGATAGTTCAG+TGG | 0.698387 | 8.3:-20047294 | MS.gene62888:CDS |
| CATCCTGAGCGTTGACCTGG+AGG | 0.703641 | 8.3:+20048198 | None:intergenic |
| GGTGCAGGCATGCATAGTAG+GGG | 0.709667 | 8.3:-20047315 | MS.gene62888:intron |
| GAAGATCAAGCATCTCGCCG+CGG | 0.743598 | 8.3:+20048555 | None:intergenic |
| AGTAACGGAGTATTCAACGG+AGG | 0.760315 | 8.3:+20048493 | None:intergenic |
| GAGGAGTTGATCTTAACACG+GGG | 0.771491 | 8.3:+20048512 | None:intergenic |
| TGTAGGTAAGAACATCAACG+GGG | 0.839564 | 8.3:+20048315 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGTAAATATGAGACAAT+TGG | + | chr8.3:20048047-20048066 | None:intergenic | 20.0% |
| !!! | AATTTTCATTTCGTGTAATT+TGG | - | chr8.3:20048019-20048038 | MS.gene62888:intron | 20.0% |
| !!! | ATTTTCATTTCGTGTAATTT+GGG | - | chr8.3:20048020-20048039 | MS.gene62888:intron | 20.0% |
| !!! | TTATTTTCATGATGATATGT+TGG | - | chr8.3:20047416-20047435 | MS.gene62888:intron | 20.0% |
| !!! | TTCAAATGTTTTTGAAGTAA+TGG | - | chr8.3:20047799-20047818 | MS.gene62888:intron | 20.0% |
| ! | AACTTATGTTGATCTCTATT+CGG | + | chr8.3:20047880-20047899 | None:intergenic | 25.0% |
| ! | CTAAAAATTTCTACTCCAAA+AGG | + | chr8.3:20047610-20047629 | None:intergenic | 25.0% |
| ! | GTTTATTCACTCTTAATTCA+GGG | - | chr8.3:20048084-20048103 | MS.gene62888:intron | 25.0% |
| ! | TGTTTATTCACTCTTAATTC+AGG | - | chr8.3:20048083-20048102 | MS.gene62888:intron | 25.0% |
| ! | TTTAGTGTCAAATTGCAAAT+TGG | - | chr8.3:20047517-20047536 | MS.gene62888:intron | 25.0% |
| ! | TTTATTCACTCTTAATTCAG+GGG | - | chr8.3:20048085-20048104 | MS.gene62888:intron | 25.0% |
| !! | AGTGTGAAATAAAGTGTTAT+TGG | - | chr8.3:20048183-20048202 | MS.gene62888:intron | 25.0% |
| !!! | AATTACTATTTTTGAGCTCT+AGG | - | chr8.3:20047484-20047503 | MS.gene62888:intron | 25.0% |
| !!! | ATTACTATTTTTGAGCTCTA+GGG | - | chr8.3:20047485-20047504 | MS.gene62888:intron | 25.0% |
| !!! | TTGGATGAATATTTTTGACT+GGG | - | chr8.3:20047435-20047454 | MS.gene62888:intron | 25.0% |
| ATATCAATACATAGTGTCTC+CGG | + | chr8.3:20047545-20047564 | None:intergenic | 30.0% | |
| GTCTCATATTTACAATTTCG+AGG | - | chr8.3:20048050-20048069 | MS.gene62888:intron | 30.0% | |
| GTTCTATTAAACTGACAGAA+TGG | - | chr8.3:20047962-20047981 | MS.gene62888:intron | 30.0% | |
| TATGAAGTCATCAGTCTAAA+AGG | - | chr8.3:20048367-20048386 | MS.gene62888:CDS | 30.0% | |
| TCTAAAAGGTTACACTTCTT+GGG | - | chr8.3:20048381-20048400 | MS.gene62888:CDS | 30.0% | |
| TTCACTATAGAAAGTGAGAA+AGG | - | chr8.3:20048156-20048175 | MS.gene62888:intron | 30.0% | |
| ! | AAATAAAGTGTTATTGGTGC+AGG | - | chr8.3:20048189-20048208 | MS.gene62888:intron | 30.0% |
| ! | ATTGACGATCTTTAAGTTCA+AGG | - | chr8.3:20047993-20048012 | MS.gene62888:intron | 30.0% |
| ! | TCGGTTTGACATAAAAACAA+GGG | - | chr8.3:20047668-20047687 | MS.gene62888:intron | 30.0% |
| ! | TGTTGTTTAGTTTCATGAAC+TGG | + | chr8.3:20047847-20047866 | None:intergenic | 30.0% |
| !! | GTTGGATGAATATTTTTGAC+TGG | - | chr8.3:20047434-20047453 | MS.gene62888:intron | 30.0% |
| !! | GTTGTTTCTCCAAAAAACTA+AGG | + | chr8.3:20048288-20048307 | None:intergenic | 30.0% |
| !!! | TATTCCTGTCCTTAGTTTTT+TGG | - | chr8.3:20048276-20048295 | MS.gene62888:CDS | 30.0% |
| !!! | TTTTGAAGTAATGGTCCATT+GGG | - | chr8.3:20047808-20047827 | MS.gene62888:intron | 30.0% |
| !!! | TTTTTGAAGTAATGGTCCAT+TGG | - | chr8.3:20047807-20047826 | MS.gene62888:intron | 30.0% |
| AAACCGAGATGAATCCAAAT+TGG | + | chr8.3:20047281-20047300 | None:intergenic | 35.0% | |
| ATGTAGGTAAGAACATCAAC+GGG | + | chr8.3:20047208-20047227 | None:intergenic | 35.0% | |
| ATTTGGATTCATCTCGGTTT+CGG | - | chr8.3:20047281-20047300 | MS.gene62888:CDS | 35.0% | |
| CAATGTGCACATGAATAATG+AGG | - | chr8.3:20048567-20048586 | MS.gene62888:CDS | 35.0% | |
| CTCACTTTCTATAGTGAACA+CGG | + | chr8.3:20048154-20048173 | None:intergenic | 35.0% | |
| CTCATTATTCATGTGCACAT+TGG | + | chr8.3:20048569-20048588 | None:intergenic | 35.0% | |
| GATGTAGGTAAGAACATCAA+CGG | + | chr8.3:20047209-20047228 | None:intergenic | 35.0% | |
| GGATTCTGCTAAAACTATCT+TGG | - | chr8.3:20048606-20048625 | MS.gene62888:CDS | 35.0% | |
| GTACCAATTTGGATTCATCT+CGG | - | chr8.3:20047275-20047294 | MS.gene62888:CDS | 35.0% | |
| GTCTAAAAGGTTACACTTCT+TGG | - | chr8.3:20048380-20048399 | MS.gene62888:CDS | 35.0% | |
| TGAATAATGAGGAGGAACAA+AGG | - | chr8.3:20048578-20048597 | MS.gene62888:CDS | 35.0% | |
| TTCTCCAAAAAACTAAGGAC+AGG | + | chr8.3:20048283-20048302 | None:intergenic | 35.0% | |
| TTCTGCTAAAACTATCTTGG+AGG | - | chr8.3:20048609-20048628 | MS.gene62888:CDS | 35.0% | |
| TTTCCTTTGGTCCCTAATAA+TGG | + | chr8.3:20048440-20048459 | None:intergenic | 35.0% | |
| TTTCTGGGTTTCCTTCTAAT+CGG | - | chr8.3:20047239-20047258 | MS.gene62888:CDS | 35.0% | |
| ! | CAACGATTGAAGACATGTTT+TGG | + | chr8.3:20047769-20047788 | None:intergenic | 35.0% |
| ! | GTCAAATTGCAAATTGGTTC+CGG | - | chr8.3:20047523-20047542 | MS.gene62888:intron | 35.0% |
| ! | TTTGAAGTAATGGTCCATTG+GGG | - | chr8.3:20047809-20047828 | MS.gene62888:intron | 35.0% |
| !! | GTCGGTTTGACATAAAAACA+AGG | - | chr8.3:20047667-20047686 | MS.gene62888:intron | 35.0% |
| ATGTTCTTACCTACATCGCA+TGG | - | chr8.3:20047212-20047231 | MS.gene62888:CDS | 40.0% | |
| ATTAAGTCATCGTCTCAACG+AGG | + | chr8.3:20047643-20047662 | None:intergenic | 40.0% | |
| CGTTGAGACGATGACTTAAT+TGG | - | chr8.3:20047643-20047662 | MS.gene62888:intron | 40.0% | |
| CTAGGCTTAATCTTCTTCAG+AGG | - | chr8.3:20047104-20047123 | MS.gene62888:CDS | 40.0% | |
| GACGATGACTTAATTGGTGT+CGG | - | chr8.3:20047649-20047668 | MS.gene62888:intron | 40.0% | |
| GTTCCATTATTAGGGACCAA+AGG | - | chr8.3:20048434-20048453 | MS.gene62888:CDS | 40.0% | |
| TGCATATGAGAAAGAAACGC+TGG | - | chr8.3:20048312-20048331 | MS.gene62888:CDS | 40.0% | |
| TGTAGGTAAGAACATCAACG+GGG | + | chr8.3:20047207-20047226 | None:intergenic | 40.0% | |
| TGTGCACATGAATAATGAGG+AGG | - | chr8.3:20048570-20048589 | MS.gene62888:CDS | 40.0% | |
| TTCTGGGTTTCCTTCTAATC+GGG | - | chr8.3:20047240-20047259 | MS.gene62888:CDS | 40.0% | |
| TTTCCTTCTAATCGGGTCAT+CGG | - | chr8.3:20047247-20047266 | MS.gene62888:CDS | 40.0% | |
| ! | AATTCACCCTGTGTCTGTTT+TGG | - | chr8.3:20048459-20048478 | MS.gene62888:CDS | 40.0% |
| ! | ACACAGGGTGAATTTTCCTT+TGG | + | chr8.3:20048453-20048472 | None:intergenic | 40.0% |
| ! | AGCAGTAACGGAGTATTCAA+CGG | + | chr8.3:20047032-20047051 | None:intergenic | 40.0% |
| !!! | GTTTTGGCTAAGGGGTTTTA+TGG | - | chr8.3:20048475-20048494 | MS.gene62888:CDS | 40.0% |
| ACATCGCATGGAAGCTTTCT+GGG | - | chr8.3:20047224-20047243 | MS.gene62888:CDS | 45.0% | |
| ACGATGATCAGAACCGTTTC+CGG | + | chr8.3:20047178-20047197 | None:intergenic | 45.0% | |
| AGAAAGCTTCCATGCGATGT+AGG | + | chr8.3:20047224-20047243 | None:intergenic | 45.0% | |
| AGTTAGGATGGTCTGAGCAA+TGG | + | chr8.3:20046894-20046913 | None:intergenic | 45.0% | |
| AGTTGATCTTAACACGGGGA+AGG | + | chr8.3:20047006-20047025 | None:intergenic | 45.0% | |
| ATGAGGAGGAACAAAGGCTT+AGG | - | chr8.3:20048584-20048603 | MS.gene62888:CDS | 45.0% | |
| CCTTAGCCAAAACAGACACA+GGG | + | chr8.3:20048468-20048487 | None:intergenic | 45.0% | |
| CTCCAAAAGGCAACATACGT+TGG | + | chr8.3:20047597-20047616 | None:intergenic | 45.0% | |
| CTTGGCGCGTTCCATTATTA+GGG | - | chr8.3:20048426-20048445 | MS.gene62888:CDS | 45.0% | |
| GAGGAATCTTTCTCTGTTCC+AGG | - | chr8.3:20047123-20047142 | MS.gene62888:CDS | 45.0% | |
| GGCTGAGACGCTAATCTAAT+TGG | + | chr8.3:20047714-20047733 | None:intergenic | 45.0% | |
| GTTACACTTCTTGGGCCATT+GGG | - | chr8.3:20048389-20048408 | MS.gene62888:CDS | 45.0% | |
| GTTGAATACTCCGTTACTGC+TGG | - | chr8.3:20047031-20047050 | MS.gene62888:CDS | 45.0% | |
| TACATCGCATGGAAGCTTTC+TGG | - | chr8.3:20047223-20047242 | MS.gene62888:CDS | 45.0% | |
| TGAGGAGGAACAAAGGCTTA+GGG | - | chr8.3:20048585-20048604 | MS.gene62888:CDS | 45.0% | |
| TTCCTTCTAATCGGGTCATC+GGG | - | chr8.3:20047248-20047267 | MS.gene62888:CDS | 45.0% | |
| TTGTGGTCTAGCATCAGCAT+TGG | - | chr8.3:20048250-20048269 | MS.gene62888:CDS | 45.0% | |
| ! | AGTAACGGAGTATTCAACGG+AGG | + | chr8.3:20047029-20047048 | None:intergenic | 45.0% |
| ! | CACCAACGTATGTTGCCTTT+TGG | - | chr8.3:20047592-20047611 | MS.gene62888:intron | 45.0% |
| ! | CGGAGGAGTTGATCTTAACA+CGG | + | chr8.3:20047012-20047031 | None:intergenic | 45.0% |
| ! | GAGGAGTTGATCTTAACACG+GGG | + | chr8.3:20047010-20047029 | None:intergenic | 45.0% |
| ! | GGAGGAGTTGATCTTAACAC+GGG | + | chr8.3:20047011-20047030 | None:intergenic | 45.0% |
| !! | GCTAAGGGGTTTTATGGCAT+AGG | - | chr8.3:20048481-20048500 | MS.gene62888:CDS | 45.0% |
| !!! | CCTGTGTCTGTTTTGGCTAA+GGG | - | chr8.3:20048466-20048485 | MS.gene62888:CDS | 45.0% |
| !!! | CTGTGTCTGTTTTGGCTAAG+GGG | - | chr8.3:20048467-20048486 | MS.gene62888:CDS | 45.0% |
| AACAAACCCGACAAACTCCG+CGG | - | chr8.3:20046947-20046966 | MS.gene62888:CDS | 50.0% | |
| CCAGGCAATTATACCCCCTT+TGG | - | chr8.3:20047141-20047160 | MS.gene62888:CDS | 50.0% | |
| CCCTTAGCCAAAACAGACAC+AGG | + | chr8.3:20048469-20048488 | None:intergenic | 50.0% | |
| CTCAGCCATGAGAACGAGAA+GGG | - | chr8.3:20047727-20047746 | MS.gene62888:intron | 50.0% | |
| GATCTCTGTATTGTCACCGC+CGG | - | chr8.3:20047058-20047077 | MS.gene62888:CDS | 50.0% | |
| GCTTGGCGCGTTCCATTATT+AGG | - | chr8.3:20048425-20048444 | MS.gene62888:CDS | 50.0% | |
| GGCAAGTTCTATGTCCCCAA+TGG | + | chr8.3:20047826-20047845 | None:intergenic | 50.0% | |
| GGCGGTGACAATACAGAGAT+CGG | + | chr8.3:20047059-20047078 | None:intergenic | 50.0% | |
| GGGATAGTTCAGTGGCATTG+TGG | - | chr8.3:20048233-20048252 | MS.gene62888:CDS | 50.0% | |
| GGTAAGAACATCAACGGGGT+TGG | + | chr8.3:20047203-20047222 | None:intergenic | 50.0% | |
| GGTGAGGTCTTGAGTTAGGA+TGG | + | chr8.3:20046906-20046925 | None:intergenic | 50.0% | |
| GGTTACACTTCTTGGGCCAT+TGG | - | chr8.3:20048388-20048407 | MS.gene62888:CDS | 50.0% | |
| TCTCAGCCATGAGAACGAGA+AGG | - | chr8.3:20047726-20047745 | MS.gene62888:intron | 50.0% | |
| TGGTGCAGGCATGCATAGTA+GGG | - | chr8.3:20048203-20048222 | MS.gene62888:CDS | 50.0% | |
| TGTAGCCCTTCTCGTTCTCA+TGG | + | chr8.3:20047735-20047754 | None:intergenic | 50.0% | |
| TTCTAATCGGGTCATCGGGT+CGG | - | chr8.3:20047252-20047271 | MS.gene62888:CDS | 50.0% | |
| TTCTTGGGCCATTGGGTACT+CGG | - | chr8.3:20048396-20048415 | MS.gene62888:CDS | 50.0% | |
| TTGGAGGTCCAGACTCAGTT+GGG | - | chr8.3:20048625-20048644 | MS.gene62888:CDS | 50.0% | |
| TTGGTGCAGGCATGCATAGT+AGG | - | chr8.3:20048202-20048221 | MS.gene62888:CDS | 50.0% | |
| ! | CCAAAGGGGGTATAATTGCC+TGG | + | chr8.3:20047144-20047163 | None:intergenic | 50.0% |
| ! | TGGTCTAGCATCAGCATTGG+TGG | - | chr8.3:20048253-20048272 | MS.gene62888:CDS | 50.0% |
| !!! | CCCTGTGTCTGTTTTGGCTA+AGG | - | chr8.3:20048465-20048484 | MS.gene62888:CDS | 50.0% |
| AGCACAGCTTGGAAGAGGAG+GGG | - | chr8.3:20048531-20048550 | MS.gene62888:CDS | 55.0% | |
| CAGCACAGCTTGGAAGAGGA+GGG | - | chr8.3:20048530-20048549 | MS.gene62888:CDS | 55.0% | |
| CATCGGGTCGGGTACCAATT+TGG | - | chr8.3:20047264-20047283 | MS.gene62888:CDS | 55.0% | |
| CCTCATTGCTGATCACCTCC+AGG | - | chr8.3:20047306-20047325 | MS.gene62888:CDS | 55.0% | |
| CCTGGAGGTGATCAGCAATG+AGG | + | chr8.3:20047309-20047328 | None:intergenic | 55.0% | |
| CGTCGGTGAGGTCTTGAGTT+AGG | + | chr8.3:20046910-20046929 | None:intergenic | 55.0% | |
| CTTGGAGGTCCAGACTCAGT+TGG | - | chr8.3:20048624-20048643 | MS.gene62888:CDS | 55.0% | |
| GAAGATCAAGCATCTCGCCG+CGG | + | chr8.3:20046967-20046986 | None:intergenic | 55.0% | |
| GACCCGATGACCCGATTAGA+AGG | + | chr8.3:20047253-20047272 | None:intergenic | 55.0% | |
| GAGATCGGAGCCAGCAGTAA+CGG | + | chr8.3:20047044-20047063 | None:intergenic | 55.0% | |
| GCATGCATAGTAGGGGAGCA+CGG | - | chr8.3:20048211-20048230 | MS.gene62888:CDS | 55.0% | |
| GGTCAACGCTCAGGATGTTC+AGG | - | chr8.3:20047327-20047346 | MS.gene62888:intron | 55.0% | |
| GGTGCAGGCATGCATAGTAG+GGG | - | chr8.3:20048204-20048223 | MS.gene62888:CDS | 55.0% | |
| TCTAATCGGGTCATCGGGTC+GGG | - | chr8.3:20047253-20047272 | MS.gene62888:CDS | 55.0% | |
| TTGAGCTTGCCAGCACAGCT+TGG | - | chr8.3:20048520-20048539 | MS.gene62888:CDS | 55.0% | |
| TTGCCAGCACAGCTTGGAAG+AGG | - | chr8.3:20048526-20048545 | MS.gene62888:CDS | 55.0% | |
| ! | ATGCATAGTAGGGGAGCACG+GGG | - | chr8.3:20048213-20048232 | MS.gene62888:CDS | 55.0% |
| ! | CATGCATAGTAGGGGAGCAC+GGG | - | chr8.3:20048212-20048231 | MS.gene62888:CDS | 55.0% |
| !! | GAACATCCTGAGCGTTGACC+TGG | + | chr8.3:20047327-20047346 | None:intergenic | 55.0% |
| ACCACCGATCTGCCTTGCAC+CGG | + | chr8.3:20047080-20047099 | None:intergenic | 60.0% | |
| ATCTCGCCGCGGAGTTTGTC+GGG | + | chr8.3:20046956-20046975 | None:intergenic | 60.0% | |
| CATCTCGCCGCGGAGTTTGT+CGG | + | chr8.3:20046957-20046976 | None:intergenic | 60.0% | |
| CCAGCACAGCTTGGAAGAGG+AGG | - | chr8.3:20048529-20048548 | MS.gene62888:CDS | 60.0% | |
| CCGGCGAGTAACGAGCCAAA+GGG | + | chr8.3:20047159-20047178 | None:intergenic | 60.0% | |
| CCTCCTCTTCCAAGCTGTGC+TGG | + | chr8.3:20048532-20048551 | None:intergenic | 60.0% | |
| CGGCGAGTAACGAGCCAAAG+GGG | + | chr8.3:20047158-20047177 | None:intergenic | 60.0% | |
| GGAGCACGGGGATAGTTCAG+TGG | - | chr8.3:20048225-20048244 | MS.gene62888:CDS | 60.0% | |
| GGCAGATCGGTGGTGAGTCT+AGG | - | chr8.3:20047086-20047105 | MS.gene62888:CDS | 60.0% | |
| GGCGAGTAACGAGCCAAAGG+GGG | + | chr8.3:20047157-20047176 | None:intergenic | 60.0% | |
| GGCTCGTTACTCGCCGGAAA+CGG | - | chr8.3:20047162-20047181 | MS.gene62888:CDS | 60.0% | |
| GTATTGTCACCGCCGGTGCA+AGG | - | chr8.3:20047065-20047084 | MS.gene62888:CDS | 60.0% | |
| GTCGACGATGACGAGCTCGT+CGG | + | chr8.3:20046927-20046946 | None:intergenic | 60.0% | |
| TCACCTCCAGGTCAACGCTC+AGG | - | chr8.3:20047318-20047337 | MS.gene62888:intron | 60.0% | |
| TCCGGCGAGTAACGAGCCAA+AGG | + | chr8.3:20047160-20047179 | None:intergenic | 60.0% | |
| TTGGGCCATTGGGTACTCGG+TGG | - | chr8.3:20048399-20048418 | MS.gene62888:CDS | 60.0% | |
| ! | CCCTTTGGCTCGTTACTCGC+CGG | - | chr8.3:20047156-20047175 | MS.gene62888:CDS | 60.0% |
| !! | CATCCTGAGCGTTGACCTGG+AGG | + | chr8.3:20047324-20047343 | None:intergenic | 60.0% |
| !! | CTTGGAAGAGGAGGGGTGCT+TGG | - | chr8.3:20048538-20048557 | MS.gene62888:CDS | 60.0% |
| ACCGATCTGCCTTGCACCGG+CGG | + | chr8.3:20047077-20047096 | None:intergenic | 65.0% | |
| ACCGCCGGTGCAAGGCAGAT+CGG | - | chr8.3:20047073-20047092 | MS.gene62888:CDS | 65.0% | |
| CGATGACGAGCTCGTCGGTG+AGG | + | chr8.3:20046922-20046941 | None:intergenic | 65.0% | |
| GCCAGCCACCGAGTACCCAA+TGG | + | chr8.3:20048407-20048426 | None:intergenic | 65.0% | |
| ! | GCCATTGGGTACTCGGTGGC+TGG | - | chr8.3:20048403-20048422 | MS.gene62888:CDS | 65.0% |
| ! | TGGGTACTCGGTGGCTGGCT+TGG | - | chr8.3:20048408-20048427 | MS.gene62888:CDS | 65.0% |
| GCCGGTGCAAGGCAGATCGG+TGG | - | chr8.3:20047076-20047095 | MS.gene62888:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 20046887 | 20048654 | 20046887 | ID=MS.gene62888 |
| chr8.3 | mRNA | 20046887 | 20048654 | 20046887 | ID=MS.gene62888.t1;Parent=MS.gene62888 |
| chr8.3 | exon | 20048193 | 20048654 | 20048193 | ID=MS.gene62888.t1.exon1;Parent=MS.gene62888.t1 |
| chr8.3 | CDS | 20048193 | 20048654 | 20048193 | ID=cds.MS.gene62888.t1;Parent=MS.gene62888.t1 |
| chr8.3 | exon | 20046887 | 20047330 | 20046887 | ID=MS.gene62888.t1.exon2;Parent=MS.gene62888.t1 |
| chr8.3 | CDS | 20046887 | 20047330 | 20046887 | ID=cds.MS.gene62888.t1;Parent=MS.gene62888.t1 |
| Gene Sequence |
| Protein sequence |
