Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62956.t1 | XP_003589663.1 | 89.7 | 145 | 13 | 1 | 1 | 145 | 1 | 143 | 6.20E-67 | 263.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62956.t1 | G7IA03 | 89.7 | 145 | 13 | 1 | 1 | 145 | 1 | 143 | 4.5e-67 | 263.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051748 | MS.gene62956 | 0.80942 | 1.91E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene62956 | 0.800488 | 1.41E-48 | -1.69E-46 |
| MS.gene051987 | MS.gene62956 | 0.803863 | 2.85E-49 | -1.69E-46 |
| MS.gene05344 | MS.gene62956 | -0.807639 | 4.58E-50 | -1.69E-46 |
| MS.gene057452 | MS.gene62956 | -0.800404 | 1.46E-48 | -1.69E-46 |
| MS.gene05781 | MS.gene62956 | 0.805696 | 1.18E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene62956 | 0.842113 | 3.15E-58 | -1.69E-46 |
| MS.gene059360 | MS.gene62956 | 0.806345 | 8.61E-50 | -1.69E-46 |
| MS.gene059872 | MS.gene62956 | -0.804546 | 2.05E-49 | -1.69E-46 |
| MS.gene060297 | MS.gene62956 | 0.816945 | 4.26E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62956.t1 | MTR_1g031730 | 88.372 | 129 | 13 | 1 | 17 | 145 | 17 | 143 | 1.68e-77 | 229 |
| MS.gene62956.t1 | MTR_3g023230 | 73.043 | 115 | 28 | 2 | 17 | 129 | 15 | 128 | 8.66e-53 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 41 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGAGACGGTTATGTAAAT+TGG | 0.163349 | 1.3:-16901480 | MS.gene62956:CDS |
| CAGATCTGCTCCTTATTTCT+TGG | 0.214228 | 1.3:-16901435 | MS.gene62956:CDS |
| CATATGAAATCACCTTCTTC+TGG | 0.244250 | 1.3:+16900887 | None:intergenic |
| AGTTTACGACGAATTTATTA+AGG | 0.288971 | 1.3:-16901084 | MS.gene62956:CDS |
| TTCAGCTCCTGTACGGGACT+TGG | 0.305229 | 1.3:-16900088 | MS.gene62956:intron |
| TTTATTAAGGAGTTGGTTCC+AGG | 0.330389 | 1.3:-16901071 | MS.gene62956:intron |
| GCCTTCTCCTCCAAGAAATA+AGG | 0.350680 | 1.3:+16901425 | None:intergenic |
| CATAGAAGCATCCACTTCTC+CGG | 0.429191 | 1.3:+16901499 | None:intergenic |
| GGCTGGCAGAGGAGGAGGAT+GGG | 0.431458 | 1.3:-16901717 | MS.gene62956:CDS |
| CGACGAATTTATTAAGGAGT+TGG | 0.435035 | 1.3:-16901078 | MS.gene62956:CDS |
| ATCTGCTCCTTATTTCTTGG+AGG | 0.442959 | 1.3:-16901432 | MS.gene62956:CDS |
| ATATGAAATCACCTTCTTCT+GGG | 0.447996 | 1.3:+16900888 | None:intergenic |
| GGATGGGGATTCCGCGGACG+TGG | 0.448389 | 1.3:-16901701 | MS.gene62956:CDS |
| ACTTCTCCGGGTTTAGCATC+AGG | 0.450187 | 1.3:+16901512 | None:intergenic |
| TACTCGTGATTCTCTGCCAC+AGG | 0.453424 | 1.3:-16901111 | MS.gene62956:CDS |
| TCCTTATTTCTTGGAGGAGA+AGG | 0.454052 | 1.3:-16901426 | MS.gene62956:CDS |
| GAATTCTTTCAGCTCCTGTA+CGG | 0.460675 | 1.3:-16900095 | MS.gene62956:intron |
| GGAGGAGAAGGCACAATTCA+AGG | 0.468367 | 1.3:-16901414 | MS.gene62956:CDS |
| TCAGCTCCTGTACGGGACTT+GGG | 0.479744 | 1.3:-16900087 | MS.gene62956:intron |
| GCTGGCAGAGGAGGAGGATG+GGG | 0.488705 | 1.3:-16901716 | MS.gene62956:CDS |
| GGATTCCGCGGACGTGGAAG+AGG | 0.504262 | 1.3:-16901695 | MS.gene62956:CDS |
| AATTCTTTCAGCTCCTGTAC+GGG | 0.508880 | 1.3:-16900094 | MS.gene62956:intron |
| CAGGTAAAACTATGCTGAGC+CGG | 0.511315 | 1.3:-16900928 | MS.gene62956:CDS |
| CAGAGAATCACGAGTAAAGC+TGG | 0.512092 | 1.3:+16901118 | None:intergenic |
| ATAGAAGCATCCACTTCTCC+GGG | 0.517532 | 1.3:+16901500 | None:intergenic |
| TAAATGGCTGGCAGAGGAGG+AGG | 0.522366 | 1.3:-16901722 | MS.gene62956:CDS |
| TCTAATCCCAAGTCCCGTAC+AGG | 0.525419 | 1.3:+16900081 | None:intergenic |
| TGGCTGGCAGAGGAGGAGGA+TGG | 0.533763 | 1.3:-16901718 | MS.gene62956:CDS |
| AATTTGCCTGATGCTAAACC+CGG | 0.548121 | 1.3:-16901518 | MS.gene62956:CDS |
| TCGTAAATGGCTGGCAGAGG+AGG | 0.554599 | 1.3:-16901725 | None:intergenic |
| ATTTCAGCGTCGTAAATGGC+TGG | 0.557038 | 1.3:-16901734 | None:intergenic |
| GCGTCGTAAATGGCTGGCAG+AGG | 0.562628 | 1.3:-16901728 | None:intergenic |
| CGTACATGGAACCCAGAAGA+AGG | 0.566920 | 1.3:-16900899 | MS.gene62956:intron |
| TGATGCTAAACCCGGAGAAG+TGG | 0.591064 | 1.3:-16901510 | MS.gene62956:CDS |
| AAACAACAAATGGGACTGGA+CGG | 0.594767 | 1.3:+16901663 | None:intergenic |
| TGATATAGAGAAGAGTCGCC+TGG | 0.601366 | 1.3:-16900275 | MS.gene62956:intron |
| GGAGGAGGATGGGGATTCCG+CGG | 0.601811 | 1.3:-16901707 | MS.gene62956:CDS |
| GAGGAGAAGGCACAATTCAA+GGG | 0.603074 | 1.3:-16901413 | MS.gene62956:intron |
| ATGCGCCTCTTCCACGTCCG+CGG | 0.629140 | 1.3:+16901690 | None:intergenic |
| AAGTGGATGCTTCTATGAGA+CGG | 0.631722 | 1.3:-16901493 | MS.gene62956:CDS |
| TCGTCGTAAACTAAAACCTG+TGG | 0.667322 | 1.3:+16901095 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTATACATAAAAATATATAA+AGG | + | chr1.3:16901439-16901458 | None:intergenic | 10.0% |
| !! | TAAACAAAATAAAAAGAAAA+AGG | + | chr1.3:16900941-16900960 | None:intergenic | 10.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr1.3:16901311-16901330 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr1.3:16901310-16901329 | MS.gene62956:intron | 15.0% |
| !! | CTAATAATTTAGACTTAAAT+TGG | - | chr1.3:16900844-16900863 | MS.gene62956:intron | 15.0% |
| !! | TAAATAAAAAAAAGTTACCT+CGG | + | chr1.3:16900167-16900186 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | + | chr1.3:16901184-16901203 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr1.3:16901287-16901306 | None:intergenic | 15.0% |
| !! | AAAATAAAGGAAAGAATTGT+AGG | + | chr1.3:16901565-16901584 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr1.3:16901301-16901320 | MS.gene62956:intron | 20.0% |
| !! | AAATAAAAAAAAGTTACCTC+GGG | + | chr1.3:16900166-16900185 | None:intergenic | 20.0% |
| !! | ATCAATTAAGGAATCAAAAA+AGG | + | chr1.3:16901624-16901643 | None:intergenic | 20.0% |
| !! | TTACCAAATTACAATTAAAG+TGG | - | chr1.3:16900476-16900495 | MS.gene62956:intron | 20.0% |
| ! | AACTCACACTTAATCAATTA+AGG | + | chr1.3:16901636-16901655 | None:intergenic | 25.0% |
| ! | AGTCTAAATTATTAGTTACC+AGG | + | chr1.3:16900839-16900858 | None:intergenic | 25.0% |
| ! | AGTTTACGACGAATTTATTA+AGG | - | chr1.3:16900717-16900736 | MS.gene62956:intron | 25.0% |
| ! | ATAATCAATACTCAGTAGAA+TGG | + | chr1.3:16901039-16901058 | None:intergenic | 25.0% |
| ! | GGAAAAAGTTATTATTGCAT+TGG | + | chr1.3:16901224-16901243 | None:intergenic | 25.0% |
| ! | TCACCACTTTAATTGTAATT+TGG | + | chr1.3:16900482-16900501 | None:intergenic | 25.0% |
| ! | TTGATTATTCCATGTACATA+TGG | - | chr1.3:16901051-16901070 | MS.gene62956:intron | 25.0% |
| !! | AGACTTAAATTGGTAATTTC+AGG | - | chr1.3:16900854-16900873 | MS.gene62956:intron | 25.0% |
| !! | GAATGTTTTCAATGCTTATA+TGG | - | chr1.3:16900538-16900557 | MS.gene62956:intron | 25.0% |
| AGTCTAGTCTATACTATCAT+GGG | - | chr1.3:16901086-16901105 | MS.gene62956:CDS | 30.0% | |
| ATAGCAAAACCATATGTACA+TGG | + | chr1.3:16901063-16901082 | None:intergenic | 30.0% | |
| ATATGAAATCACCTTCTTCT+GGG | + | chr1.3:16900916-16900935 | None:intergenic | 30.0% | |
| ATATTATCCATGTTATGAGG+TGG | - | chr1.3:16901109-16901128 | MS.gene62956:CDS | 30.0% | |
| CAATATTGTGTTACGAGATA+TGG | - | chr1.3:16901662-16901681 | MS.gene62956:CDS | 30.0% | |
| CAATGACATTGGACAAATTT+AGG | - | chr1.3:16900502-16900521 | MS.gene62956:intron | 30.0% | |
| GTTATTCAAATTTGAAGAGC+AGG | - | chr1.3:16900989-16901008 | MS.gene62956:intron | 30.0% | |
| TAGTCTAGTCTATACTATCA+TGG | - | chr1.3:16901085-16901104 | MS.gene62956:CDS | 30.0% | |
| TATGAGACGGTTATGTAAAT+TGG | - | chr1.3:16900321-16900340 | MS.gene62956:intron | 30.0% | |
| TTAAGGAATCAAAAAAGGAC+TGG | + | chr1.3:16901619-16901638 | None:intergenic | 30.0% | |
| ! | AATAATGGAATGGTCTTTGT+GGG | - | chr1.3:16900757-16900776 | MS.gene62956:intron | 30.0% |
| ! | CCAGTATACTTGTTAAGTAA+GGG | + | chr1.3:16900594-16900613 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr1.3:16901393-16901412 | MS.gene62956:intron | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr1.3:16901392-16901411 | None:intergenic | 30.0% |
| AAACAGATACTGACACATGT+CGG | + | chr1.3:16900240-16900259 | None:intergenic | 35.0% | |
| AAGGAAAGAATTGTAGGCAT+AGG | + | chr1.3:16901559-16901578 | None:intergenic | 35.0% | |
| ACCATTCCATTATTCATACC+TGG | + | chr1.3:16900751-16900770 | None:intergenic | 35.0% | |
| CATATGAAATCACCTTCTTC+TGG | + | chr1.3:16900917-16900936 | None:intergenic | 35.0% | |
| CCCTTACTTAACAAGTATAC+TGG | - | chr1.3:16900591-16900610 | MS.gene62956:intron | 35.0% | |
| CGACGAATTTATTAAGGAGT+TGG | - | chr1.3:16900723-16900742 | MS.gene62956:intron | 35.0% | |
| GCAGATATGTAGGACAAATA+CGG | + | chr1.3:16900566-16900585 | None:intergenic | 35.0% | |
| GGCAATGGTTATATTTCTTG+TGG | - | chr1.3:16900778-16900797 | MS.gene62956:intron | 35.0% | |
| GGGATATTATCCATGTTATG+AGG | - | chr1.3:16901106-16901125 | MS.gene62956:CDS | 35.0% | |
| TAAAGTGGTGACAATGACAT+TGG | - | chr1.3:16900491-16900510 | MS.gene62956:intron | 35.0% | |
| TACTGATCAAGATGTTTGTG+TGG | - | chr1.3:16901472-16901491 | MS.gene62956:CDS | 35.0% | |
| TGTGTTACGAGATATGGATA+TGG | - | chr1.3:16901668-16901687 | MS.gene62956:CDS | 35.0% | |
| TTGGTTCCAGGTATGAATAA+TGG | - | chr1.3:16900742-16900761 | MS.gene62956:intron | 35.0% | |
| ! | AATTGGAGGGTACAATTGAA+AGG | + | chr1.3:16901245-16901264 | None:intergenic | 35.0% |
| ! | GAATAATGGAATGGTCTTTG+TGG | - | chr1.3:16900756-16900775 | MS.gene62956:intron | 35.0% |
| ! | GCCAGTATACTTGTTAAGTA+AGG | + | chr1.3:16900595-16900614 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr1.3:16901262-16901281 | None:intergenic | 35.0% |
| ! | GTATACTTGTTAAGTAAGGG+AGG | + | chr1.3:16900591-16900610 | None:intergenic | 35.0% |
| ! | TCCAGGTATGAATAATGGAA+TGG | - | chr1.3:16900747-16900766 | MS.gene62956:intron | 35.0% |
| ! | TCTTTATGCATTTGAGTTCC+TGG | - | chr1.3:16900818-16900837 | MS.gene62956:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr1.3:16901258-16901277 | None:intergenic | 35.0% |
| ! | TTGAAGAGCAGGATCTATTT+TGG | - | chr1.3:16901000-16901019 | MS.gene62956:intron | 35.0% |
| ! | TTTATTAAGGAGTTGGTTCC+AGG | - | chr1.3:16900730-16900749 | MS.gene62956:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr1.3:16901158-16901177 | None:intergenic | 35.0% |
| !! | TGTTTGCTGTTTAATGCTAC+AGG | - | chr1.3:16900255-16900274 | MS.gene62956:intron | 35.0% |
| AAACAACAAATGGGACTGGA+CGG | + | chr1.3:16900141-16900160 | None:intergenic | 40.0% | |
| AAGTGGATGCTTCTATGAGA+CGG | - | chr1.3:16900308-16900327 | MS.gene62956:intron | 40.0% | |
| AATTCTTTCAGCTCCTGTAC+GGG | - | chr1.3:16901707-16901726 | MS.gene62956:CDS | 40.0% | |
| AATTTGCCTGATGCTAAACC+CGG | - | chr1.3:16900283-16900302 | MS.gene62956:CDS | 40.0% | |
| ACCTCGGGAAAAACAACAAA+TGG | + | chr1.3:16900151-16900170 | None:intergenic | 40.0% | |
| CCTCGGGAAAAACAACAAAT+GGG | + | chr1.3:16900150-16900169 | None:intergenic | 40.0% | |
| GAATTCTTTCAGCTCCTGTA+CGG | - | chr1.3:16901706-16901725 | MS.gene62956:CDS | 40.0% | |
| GGAAAAACAACAAATGGGAC+TGG | + | chr1.3:16900145-16900164 | None:intergenic | 40.0% | |
| TCAATACTCAGTAGAATGGC+AGG | + | chr1.3:16901035-16901054 | None:intergenic | 40.0% | |
| TCGTCGTAAACTAAAACCTG+TGG | + | chr1.3:16900709-16900728 | None:intergenic | 40.0% | |
| TGAAACGGAGGGAGTAATAA+AGG | - | chr1.3:16901408-16901427 | MS.gene62956:intron | 40.0% | |
| ! | ATCTGCTCCTTATTTCTTGG+AGG | - | chr1.3:16900369-16900388 | MS.gene62956:intron | 40.0% |
| ! | CAGATCTGCTCCTTATTTCT+TGG | - | chr1.3:16900366-16900385 | MS.gene62956:intron | 40.0% |
| ! | CTTTTCCTGCTTAACTGTCA+GGG | - | chr1.3:16900614-16900633 | MS.gene62956:intron | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | chr1.3:16901259-16901278 | None:intergenic | 40.0% |
| ! | TACTTGTTAAGTAAGGGAGG+AGG | + | chr1.3:16900588-16900607 | None:intergenic | 40.0% |
| ! | TCCTTATTTCTTGGAGGAGA+AGG | - | chr1.3:16900375-16900394 | MS.gene62956:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr1.3:16901397-16901416 | MS.gene62956:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr1.3:16901416-16901397 | None:intergenic | 40.0% |
| !!! | GGTTCCATGTACGTTTTTTC+CGG | + | chr1.3:16900895-16900914 | None:intergenic | 40.0% |
| CAGAGAATCACGAGTAAAGC+TGG | + | chr1.3:16900686-16900705 | None:intergenic | 45.0% | |
| CAGAGATCCACCTCATAACA+TGG | + | chr1.3:16901119-16901138 | None:intergenic | 45.0% | |
| CAGGTAAAACTATGCTGAGC+CGG | - | chr1.3:16900873-16900892 | MS.gene62956:intron | 45.0% | |
| GATCAAGATGTTTGTGTGGC+AGG | - | chr1.3:16901476-16901495 | MS.gene62956:CDS | 45.0% | |
| GCCTTCTCCTCCAAGAAATA+AGG | + | chr1.3:16900379-16900398 | None:intergenic | 45.0% | |
| TGAGCCGGAAAAAACGTACA+TGG | - | chr1.3:16900888-16900907 | MS.gene62956:intron | 45.0% | |
| TGATATAGAGAAGAGTCGCC+TGG | - | chr1.3:16901526-16901545 | MS.gene62956:CDS | 45.0% | |
| TGTGGCAGGTCAGAAAAAAC+TGG | - | chr1.3:16901490-16901509 | MS.gene62956:CDS | 45.0% | |
| ! | GAAGGCACAATTCAAGGGTA+TGG | - | chr1.3:16900393-16900412 | MS.gene62956:intron | 45.0% |
| ! | GAGGAGAAGGCACAATTCAA+GGG | - | chr1.3:16900388-16900407 | MS.gene62956:intron | 45.0% |
| ! | GCTTTTCCTGCTTAACTGTC+AGG | - | chr1.3:16900613-16900632 | MS.gene62956:intron | 45.0% |
| !! | ATAGAAGCATCCACTTCTCC+GGG | + | chr1.3:16900304-16900323 | None:intergenic | 45.0% |
| !! | CATAGAAGCATCCACTTCTC+CGG | + | chr1.3:16900305-16900324 | None:intergenic | 45.0% |
| !!! | CCCATTTGTTGTTTTTCCCG+AGG | - | chr1.3:16900147-16900166 | MS.gene62956:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr1.3:16901396-16901415 | MS.gene62956:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr1.3:16901415-16901396 | None:intergenic | 45.0% |
| !! | AACAAAAATTAAAAAAATAA+AGG | + | chr1.3:16901578-16901597 | None:intergenic | 5.0% |
| AAGGGAGGAGGCAGATATGT+AGG | + | chr1.3:16900576-16900595 | None:intergenic | 50.0% | |
| ACCAGACACGAGAGTCTACA+AGG | + | chr1.3:16900215-16900234 | None:intergenic | 50.0% | |
| ACCTTGTAGACTCTCGTGTC+TGG | - | chr1.3:16900211-16900230 | MS.gene62956:intron | 50.0% | |
| ACTTCTCCGGGTTTAGCATC+AGG | + | chr1.3:16900292-16900311 | None:intergenic | 50.0% | |
| CGTACATGGAACCCAGAAGA+AGG | - | chr1.3:16900902-16900921 | MS.gene62956:CDS | 50.0% | |
| GGAATGGTCTTTGTGGGCAA+TGG | - | chr1.3:16900763-16900782 | MS.gene62956:intron | 50.0% | |
| GGCAGGTCAGAAAAAACTGG+CGG | - | chr1.3:16901493-16901512 | MS.gene62956:CDS | 50.0% | |
| TACTCGTGATTCTCTGCCAC+AGG | - | chr1.3:16900690-16900709 | MS.gene62956:intron | 50.0% | |
| TGATGCTAAACCCGGAGAAG+TGG | - | chr1.3:16900291-16900310 | MS.gene62956:CDS | 50.0% | |
| ! | GGAGGAGAAGGCACAATTCA+AGG | - | chr1.3:16900387-16900406 | MS.gene62956:intron | 50.0% |
| GTAGGCATAGGTGCTCTACC+AGG | + | chr1.3:16901547-16901566 | None:intergenic | 55.0% | |
| TCAGCTCCTGTACGGGACTT+GGG | - | chr1.3:16901714-16901733 | MS.gene62956:CDS | 55.0% | |
| TTCAGCTCCTGTACGGGACT+TGG | - | chr1.3:16901713-16901732 | MS.gene62956:CDS | 55.0% | |
| TTGCGCCCTGACAGTTAAGC+AGG | + | chr1.3:16900622-16900641 | None:intergenic | 55.0% | |
| ATGCGCCTCTTCCACGTCCG+CGG | + | chr1.3:16900114-16900133 | None:intergenic | 65.0% | |
| GCTGGCAGAGGAGGAGGATG+GGG | - | chr1.3:16900085-16900104 | MS.gene62956:CDS | 65.0% | |
| GGAGGAGGATGGGGATTCCG+CGG | - | chr1.3:16900094-16900113 | MS.gene62956:intron | 65.0% | |
| GGATTCCGCGGACGTGGAAG+AGG | - | chr1.3:16900106-16900125 | MS.gene62956:intron | 65.0% | |
| GGCTGGCAGAGGAGGAGGAT+GGG | - | chr1.3:16900084-16900103 | MS.gene62956:CDS | 65.0% | |
| TGGCTGGCAGAGGAGGAGGA+TGG | - | chr1.3:16900083-16900102 | MS.gene62956:CDS | 65.0% | |
| GGATGGGGATTCCGCGGACG+TGG | - | chr1.3:16900100-16900119 | MS.gene62956:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 16900082 | 16901741 | 16900082 | ID=MS.gene62956 |
| chr1.3 | mRNA | 16900082 | 16901741 | 16900082 | ID=MS.gene62956.t1;Parent=MS.gene62956 |
| chr1.3 | exon | 16901655 | 16901741 | 16901655 | ID=MS.gene62956.t1.exon1;Parent=MS.gene62956.t1 |
| chr1.3 | CDS | 16901655 | 16901741 | 16901655 | ID=cds.MS.gene62956.t1;Parent=MS.gene62956.t1 |
| chr1.3 | exon | 16901414 | 16901546 | 16901414 | ID=MS.gene62956.t1.exon2;Parent=MS.gene62956.t1 |
| chr1.3 | CDS | 16901414 | 16901546 | 16901414 | ID=cds.MS.gene62956.t1;Parent=MS.gene62956.t1 |
| chr1.3 | exon | 16901072 | 16901188 | 16901072 | ID=MS.gene62956.t1.exon3;Parent=MS.gene62956.t1 |
| chr1.3 | CDS | 16901072 | 16901188 | 16901072 | ID=cds.MS.gene62956.t1;Parent=MS.gene62956.t1 |
| chr1.3 | exon | 16900900 | 16900947 | 16900900 | ID=MS.gene62956.t1.exon4;Parent=MS.gene62956.t1 |
| chr1.3 | CDS | 16900900 | 16900947 | 16900900 | ID=cds.MS.gene62956.t1;Parent=MS.gene62956.t1 |
| chr1.3 | exon | 16900276 | 16900325 | 16900276 | ID=MS.gene62956.t1.exon5;Parent=MS.gene62956.t1 |
| chr1.3 | CDS | 16900276 | 16900325 | 16900276 | ID=cds.MS.gene62956.t1;Parent=MS.gene62956.t1 |
| chr1.3 | exon | 16900082 | 16900105 | 16900082 | ID=MS.gene62956.t1.exon6;Parent=MS.gene62956.t1 |
| chr1.3 | CDS | 16900082 | 16900105 | 16900082 | ID=cds.MS.gene62956.t1;Parent=MS.gene62956.t1 |
| Gene Sequence |
| Protein sequence |
