AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63731

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63731.t1 MTR_2g076070 98.238 227 4 0 1 227 1 227 1.78e-167 461
MS.gene63731.t1 MTR_2g076010 90.749 227 21 0 1 227 1 227 6.37e-157 434
MS.gene63731.t1 MTR_8g058350 75.330 227 51 2 5 226 10 236 5.99e-126 356
MS.gene63731.t1 MTR_2g076070 97.561 164 4 0 64 227 1 164 1.84e-116 329
MS.gene63731.t1 MTR_2g076010 89.634 164 17 0 64 227 1 164 1.62e-108 309
MS.gene63731.t1 MTR_8g058700 47.525 101 22 2 90 190 13 82 5.80e-21 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63731.t1 AT1G78780 71.186 236 55 3 5 227 17 252 6.20e-121 344
MS.gene63731.t1 AT1G78780 71.186 236 55 3 5 227 17 252 6.20e-121 344
MS.gene63731.t1 AT1G78780 69.874 239 59 3 1 227 1 238 1.46e-120 342
MS.gene63731.t1 AT1G78780 68.619 239 59 4 1 227 1 235 3.50e-116 331
MS.gene63731.t1 AT1G78780 70.455 176 40 2 64 227 1 176 1.91e-87 256

Find 62 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTCAAGTTCTTTGTTAA+TGG 0.183252 2.1:-23602374 MS.gene63731:intron
GTAAACAACTTATGATTAAT+TGG 0.225426 2.1:+23600075 None:intergenic
CTGAAATTGCTTTCAAGTTT+AGG 0.246221 2.1:-23600981 MS.gene63731:CDS
CTAAACTTGAAAGCAATTTC+AGG 0.282078 2.1:+23600982 None:intergenic
TGCTTTCAAGTTTAGGCATT+GGG 0.293525 2.1:-23600974 MS.gene63731:CDS
GTCTCTTCATTTGACTTGTA+TGG 0.318507 2.1:+23601087 None:intergenic
TGTTTCCTCCAATGATCCTT+CGG 0.338279 2.1:+23602478 None:intergenic
GTAGGGGCATGTCCCTTAAA+AGG 0.343475 2.1:+23600937 None:intergenic
TTGTATGGCTTGAAATCTTC+AGG 0.351240 2.1:+23601102 None:intergenic
TCCTTCCTTCTTCAAAGAGC+TGG 0.367470 2.1:+23602606 None:intergenic
TATGACCCAGGAGAGTTGTT+TGG 0.376206 2.1:-23600148 MS.gene63731:CDS
GACGCACAAGATCCGCTTGC+AGG 0.378288 2.1:-23602420 MS.gene63731:CDS
GAATGGACATGCTGAAGTTT+TGG 0.380812 2.1:+23600099 None:intergenic
TGCTATCTCCGCTTGATAGA+AGG 0.400178 2.1:+23600122 None:intergenic
AGGCATTGGGGATTCTTTGA+AGG 0.405743 2.1:-23600961 MS.gene63731:CDS
GTTTCCTCCAATGATCCTTC+GGG 0.414427 2.1:+23602479 None:intergenic
TCTTGGAAAAGCTGATTTGA+AGG 0.414467 2.1:+23601044 None:intergenic
GATGGTCCAATTCTCTGGCT+TGG 0.418419 2.1:-23600908 MS.gene63731:CDS
ATGGTCCAATTCTCTGGCTT+GGG 0.433013 2.1:-23600907 MS.gene63731:CDS
ATTTCCCATGCAAATCCTCT+TGG 0.434442 2.1:+23601027 None:intergenic
GAGTTCCCAAGCCAGAGAAT+TGG 0.445368 2.1:+23600902 None:intergenic
GGAAAGATGGTCCAATTCTC+TGG 0.445571 2.1:-23600913 MS.gene63731:CDS
GTCAACCAGCTCTTTGAAGA+AGG 0.445909 2.1:-23602611 MS.gene63731:CDS
TTTAAGGGACATGCCCCTAC+TGG 0.446687 2.1:-23600934 MS.gene63731:CDS
CTAGGTGGATGACACTTTGA+AGG 0.455213 2.1:-23600191 MS.gene63731:intron
GGAATGGCCCGAAGGATCAT+TGG 0.459218 2.1:-23602486 MS.gene63731:CDS
AGGCCTCCAAACAACTCTCC+TGG 0.465379 2.1:+23600142 None:intergenic
ACTTATGATTAATTGGAGAA+TGG 0.470422 2.1:+23600082 None:intergenic
TGCAAAATGCTATTAAGTCA+TGG 0.470507 2.1:-23602454 MS.gene63731:CDS
CACTTTGAAGGTTGAAGAAG+TGG 0.475985 2.1:-23600179 MS.gene63731:CDS
TTGCTTTCAAGTTTAGGCAT+TGG 0.497447 2.1:-23600975 MS.gene63731:CDS
TGCTATTAAGTCATGGGAGA+TGG 0.500588 2.1:-23602447 MS.gene63731:CDS
CATGGAGGCCCTCCCACCTA+TGG 0.501971 2.1:-23602638 MS.gene63731:CDS
GAGAATATCCAGTGGAGACA+TGG 0.509016 2.1:-23602656 MS.gene63731:CDS
GAGGGCCTCCATGTCTCCAC+TGG 0.517547 2.1:+23602648 None:intergenic
GACCCAGGAGAGTTGTTTGG+AGG 0.521378 2.1:-23600145 MS.gene63731:CDS
TTTCTAATTGCAGGCAGGGA+GGG 0.527343 2.1:-23601186 MS.gene63731:intron
GGCCTCCAAACAACTCTCCT+GGG 0.528244 2.1:+23600143 None:intergenic
GCAAAATGCTATTAAGTCAT+GGG 0.533576 2.1:-23602453 MS.gene63731:CDS
ACATGCCCCTACTGGAAAGA+TGG 0.534599 2.1:-23600926 MS.gene63731:CDS
CTCTGGCTTGGGAACTCTCA+AGG 0.542832 2.1:-23600896 MS.gene63731:intron
CTGGTTGACAAGACCATAGG+TGG 0.543209 2.1:+23602625 None:intergenic
ATTGGACCATCTTTCCAGTA+GGG 0.558086 2.1:+23600920 None:intergenic
AATTGGACCATCTTTCCAGT+AGG 0.570938 2.1:+23600919 None:intergenic
ACCAGCTCTTTGAAGAAGGA+AGG 0.578694 2.1:-23602607 MS.gene63731:CDS
GTGGAGATTTACTATGACCC+AGG 0.582286 2.1:-23600160 MS.gene63731:CDS
GCAGAGGAAACTCTAAGCAT+AGG 0.582569 2.1:-23601156 MS.gene63731:CDS
GCTTTCAAGTTTAGGCATTG+GGG 0.594203 2.1:-23600973 MS.gene63731:CDS
TGACAAGACCATAGGTGGGA+GGG 0.603232 2.1:+23602630 None:intergenic
TTTGGAGGCCTTCTATCAAG+CGG 0.613986 2.1:-23600130 MS.gene63731:CDS
TTGGACCATCTTTCCAGTAG+GGG 0.615171 2.1:+23600921 None:intergenic
ATGGCCCGAAGGATCATTGG+AGG 0.617256 2.1:-23602483 MS.gene63731:CDS
GAGCTGGTTGACAAGACCAT+AGG 0.618838 2.1:+23602622 None:intergenic
AACTTGAAAGCAATTTCAGG+TGG 0.634134 2.1:+23600985 None:intergenic
GAAATCATTAAAGTTTACAC+AGG 0.640637 2.1:-23601009 MS.gene63731:CDS
TGGTCTTGAAGTCCTGCAAG+CGG 0.649941 2.1:+23602408 None:intergenic
ATTTCTAATTGCAGGCAGGG+AGG 0.661707 2.1:-23601187 MS.gene63731:intron
CAGGGAGGGATTAACTGCAG+AGG 0.669645 2.1:-23601172 MS.gene63731:CDS
TTGACAAGACCATAGGTGGG+AGG 0.674543 2.1:+23602629 None:intergenic
AATATCCAGTGGAGACATGG+AGG 0.675076 2.1:-23602653 MS.gene63731:CDS
ATGAAGCTGAGAATATCCAG+TGG 0.685948 2.1:-23602664 MS.gene63731:CDS
TGGTTGACAAGACCATAGGT+GGG 0.689395 2.1:+23602626 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAATTTAAATATAATAA+AGG - chr2.1:23602186-23602205 MS.gene63731:intron 0.0%
!! AATTTAAATATAATAAAGGA+AGG - chr2.1:23602190-23602209 MS.gene63731:intron 10.0%
!!! AAAAATTATTTAAATTTTGG+TGG - chr2.1:23600740-23600759 MS.gene63731:intron 10.0%
!!! AAAATTATTTAAATTTTGGT+GGG - chr2.1:23600741-23600760 MS.gene63731:intron 10.0%
!!! AAATGATAATCTAAAATTAA+TGG + chr2.1:23602478-23602497 None:intergenic 10.0%
!!! ATTTAAATAATTTTTATCCA+AGG + chr2.1:23600735-23600754 None:intergenic 10.0%
!!! TTTTTTTAACAAATTTTTGT+AGG - chr2.1:23600293-23600312 MS.gene63731:intron 10.0%
!! AAATTAATAAGAAAATACCA+TGG + chr2.1:23602096-23602115 None:intergenic 15.0%
!! AAGTTAATGAATATACTAAT+AGG + chr2.1:23600898-23600917 None:intergenic 15.0%
!! AATTAATAAGAAAATACCAT+GGG + chr2.1:23602095-23602114 None:intergenic 15.0%
!! ATGAATTGAAAATTAGTATT+TGG - chr2.1:23602043-23602062 MS.gene63731:intron 15.0%
!!! AAATACTAATTTTCAATTCA+TGG + chr2.1:23602044-23602063 None:intergenic 15.0%
!!! TAAATTTTAATAATATCCCT+TGG + chr2.1:23602176-23602195 None:intergenic 15.0%
!!! TAATCTAAAATTAATGGAAA+AGG + chr2.1:23602472-23602491 None:intergenic 15.0%
!!! TCAAAAATTTAAAATGATCA+AGG + chr2.1:23601999-23602018 None:intergenic 15.0%
!!! TTCAAATTTCAATGTTTTTT+TGG + chr2.1:23602265-23602284 None:intergenic 15.0%
!! AAAATTGAGAAAGAATTACA+TGG + chr2.1:23600277-23600296 None:intergenic 20.0%
!! AGTGATGTATAAAATATAGA+GGG + chr2.1:23602559-23602578 None:intergenic 20.0%
!! ATGATCTGAATTTAATTGTT+TGG - chr2.1:23601951-23601970 MS.gene63731:intron 20.0%
!! ATTAATAAGAAAATACCATG+GGG + chr2.1:23602094-23602113 None:intergenic 20.0%
!! TAACTATAGAAATTAGATAC+AGG + chr2.1:23601544-23601563 None:intergenic 20.0%
!! TAGTGATGTATAAAATATAG+AGG + chr2.1:23602560-23602579 None:intergenic 20.0%
!! TATTATTAATTGGATTCAAG+TGG - chr2.1:23601342-23601361 MS.gene63731:intron 20.0%
!! TGATATATCATATATGTGAT+AGG + chr2.1:23602390-23602409 None:intergenic 20.0%
!!! AAATTCAAGTTCTTTGTTAA+TGG - chr2.1:23600426-23600445 MS.gene63731:intron 20.0%
!!! AACAGCTATAATTTTTACTT+CGG + chr2.1:23600994-23601013 None:intergenic 20.0%
!!! AAGTTAGCTATGATTTTTTT+AGG - chr2.1:23601265-23601284 MS.gene63731:intron 20.0%
!!! AATTCAATATTTCTAATTGC+AGG - chr2.1:23601605-23601624 MS.gene63731:intron 20.0%
!!! AGTTAGCTATGATTTTTTTA+GGG - chr2.1:23601266-23601285 MS.gene63731:intron 20.0%
!!! GAACAATAATTTTTTAACCT+AGG - chr2.1:23602591-23602610 MS.gene63731:intron 20.0%
!!! TAAATAATTTTTATCCAAGG+TGG + chr2.1:23600732-23600751 None:intergenic 20.0%
!!! TATCAAAATTTGAGATCAAT+TGG - chr2.1:23601514-23601533 MS.gene63731:intron 20.0%
!!! TTAACAAATTTTTGTAGGAA+TGG - chr2.1:23600298-23600317 MS.gene63731:intron 20.0%
!!! TTTCTCTTTTTAATCAGTTT+AGG - chr2.1:23600788-23600807 MS.gene63731:intron 20.0%
! ATATCATATATGTGATAGGT+CGG + chr2.1:23602386-23602405 None:intergenic 25.0%
! GAAATCATTAAAGTTTACAC+AGG - chr2.1:23601791-23601810 MS.gene63731:intron 25.0%
! GATAAAAAGTTGTTCTCATA+AGG + chr2.1:23602535-23602554 None:intergenic 25.0%
! TAATACATGAAACACTGATA+TGG + chr2.1:23600695-23600714 None:intergenic 25.0%
!! ACAAAGAACTTGAATTTTTC+AGG + chr2.1:23600423-23600442 None:intergenic 25.0%
!! ACTCTAAAAGTGTATAAATG+CGG + chr2.1:23602439-23602458 None:intergenic 25.0%
!! CAAAGAACTTGAATTTTTCA+GGG + chr2.1:23600422-23600441 None:intergenic 25.0%
!! GAAAAATAAGTTTTTCCTCA+CGG - chr2.1:23600838-23600857 MS.gene63731:intron 25.0%
!! GTGAATGATTCAAATTTGTT+TGG - chr2.1:23600455-23600474 MS.gene63731:intron 25.0%
!! TTTGATTCGTCAAAAAACAA+AGG - chr2.1:23601195-23601214 MS.gene63731:intron 25.0%
!!! CAATAATTTTTTAACCTAGG+TGG - chr2.1:23602594-23602613 MS.gene63731:intron 25.0%
!!! GTTAGCTATGATTTTTTTAG+GGG - chr2.1:23601267-23601286 MS.gene63731:intron 25.0%
AAAAAGTTGTTCTCATAAGG+TGG + chr2.1:23602532-23602551 None:intergenic 30.0%
AAATAGAAAGGAAGATACCA+AGG - chr2.1:23602156-23602175 MS.gene63731:intron 30.0%
AACAATTATTCATTACCGTG+AGG + chr2.1:23600856-23600875 None:intergenic 30.0%
AATAGAAAGGAAGATACCAA+GGG - chr2.1:23602157-23602176 MS.gene63731:intron 30.0%
AGAGAAGGAATAAGATTAAG+AGG + chr2.1:23600238-23600257 None:intergenic 30.0%
AGGTATGAGTTATGGTAATT+CGG + chr2.1:23601467-23601486 None:intergenic 30.0%
AGTAAGAGAATAAAAACTGG+TGG + chr2.1:23602509-23602528 None:intergenic 30.0%
AGTTATGGTAATTCGGAATT+CGG + chr2.1:23601460-23601479 None:intergenic 30.0%
ATCAGACTATACTTACCAAA+CGG - chr2.1:23601434-23601453 MS.gene63731:intron 30.0%
ATTAATTGGATTCAAGTGGT+TGG - chr2.1:23601346-23601365 MS.gene63731:intron 30.0%
CTAAACTTGAAAGCAATTTC+AGG + chr2.1:23601821-23601840 None:intergenic 30.0%
GAGAAGGAATAAGATTAAGA+GGG + chr2.1:23600237-23600256 None:intergenic 30.0%
GAGTTATGCGAAATTATTAG+CGG - chr2.1:23600634-23600653 MS.gene63731:intron 30.0%
GCAAAATGCTATTAAGTCAT+GGG - chr2.1:23600347-23600366 MS.gene63731:intron 30.0%
GGAGAGATTCATATATAAGA+GGG + chr2.1:23602418-23602437 None:intergenic 30.0%
GGTAATGAATAATTGTTGCA+TGG - chr2.1:23600859-23600878 MS.gene63731:intron 30.0%
TAACTCATACCTCTTAGAAT+CGG - chr2.1:23601475-23601494 MS.gene63731:intron 30.0%
TATTAAACTCCGATTCTAAG+AGG + chr2.1:23601487-23601506 None:intergenic 30.0%
TGCAAAATGCTATTAAGTCA+TGG - chr2.1:23600346-23600365 MS.gene63731:intron 30.0%
TGGAGTAAGAGAATAAAAAC+TGG + chr2.1:23602512-23602531 None:intergenic 30.0%
TTACATGGTATAATCTAGAG+AGG + chr2.1:23600262-23600281 None:intergenic 30.0%
! AATATTTCTAATTGCAGGCA+GGG - chr2.1:23601610-23601629 MS.gene63731:intron 30.0%
! AATTTTCCTGTTATGATGCT+GGG - chr2.1:23601150-23601169 MS.gene63731:CDS 30.0%
! AATTTTTATCCAAGGTGGAT+AGG + chr2.1:23600727-23600746 None:intergenic 30.0%
! ATTCTAAGAGGTATGAGTTA+TGG + chr2.1:23601475-23601494 None:intergenic 30.0%
!! ATTCTTTGAAGGTCCTTTTA+AGG - chr2.1:23601850-23601869 MS.gene63731:intron 30.0%
!! CTGAAATTGCTTTCAAGTTT+AGG - chr2.1:23601819-23601838 MS.gene63731:intron 30.0%
!! TTCTTTGAAGGTCCTTTTAA+GGG - chr2.1:23601851-23601870 MS.gene63731:intron 30.0%
AACTTGAAAGCAATTTCAGG+TGG + chr2.1:23601818-23601837 None:intergenic 35.0%
AAGGAATAAGATTAAGAGGG+TGG + chr2.1:23600234-23600253 None:intergenic 35.0%
ACAAGTGAAGGAATCACTTT+AGG + chr2.1:23600964-23600983 None:intergenic 35.0%
ATAATCTAGAGAGGAAGAGA+AGG + chr2.1:23600253-23600272 None:intergenic 35.0%
CGGAGAGATTCATATATAAG+AGG + chr2.1:23602419-23602438 None:intergenic 35.0%
GAACAAACGATTGTGAAGAT+GGG - chr2.1:23601124-23601143 MS.gene63731:CDS 35.0%
GAGGCTGTAATCAAATAGAA+AGG - chr2.1:23602144-23602163 MS.gene63731:intron 35.0%
TTGTATGGCTTGAAATCTTC+AGG + chr2.1:23601701-23601720 None:intergenic 35.0%
! AGGAGAATGACTTTGATTTC+TGG - chr2.1:23601397-23601416 MS.gene63731:intron 35.0%
! ATTTTTCCTGAATCATCGCT+TGG + chr2.1:23600825-23600844 None:intergenic 35.0%
! CAATATTTCTAATTGCAGGC+AGG - chr2.1:23601609-23601628 MS.gene63731:intron 35.0%
! GAATTTTCCTGTTATGATGC+TGG - chr2.1:23601149-23601168 MS.gene63731:CDS 35.0%
! GGAGAATGACTTTGATTTCT+GGG - chr2.1:23601398-23601417 MS.gene63731:intron 35.0%
! TGTTCTTTCTAGTAGTAGAG+CGG - chr2.1:23601021-23601040 MS.gene63731:CDS 35.0%
! TTCAAATCAGCTTTTCCAAG+AGG - chr2.1:23601758-23601777 MS.gene63731:intron 35.0%
! TTTTCCAAGAGGATTTGCAT+GGG - chr2.1:23601769-23601788 MS.gene63731:intron 35.0%
!! GTCTCTTCATTTGACTTGTA+TGG + chr2.1:23601716-23601735 None:intergenic 35.0%
!! TCTTGGAAAAGCTGATTTGA+AGG + chr2.1:23601759-23601778 None:intergenic 35.0%
!! TGCTTTCAAGTTTAGGCATT+GGG - chr2.1:23601826-23601845 MS.gene63731:intron 35.0%
!! TTAATTTGTGTTGCGTGTGT+AGG - chr2.1:23602109-23602128 MS.gene63731:intron 35.0%
!! TTGCTTTCAAGTTTAGGCAT+TGG - chr2.1:23601825-23601844 MS.gene63731:intron 35.0%
!!! CTTGAATTTTTCAGGGACAA+TGG + chr2.1:23600415-23600434 None:intergenic 35.0%
!!! TTGGTTTTTAGTGCAAGCAA+AGG - chr2.1:23602062-23602081 MS.gene63731:intron 35.0%
AATTGGACCATCTTTCCAGT+AGG + chr2.1:23601884-23601903 None:intergenic 40.0%
ATGAAGCTGAGAATATCCAG+TGG - chr2.1:23600136-23600155 MS.gene63731:CDS 40.0%
ATTGGACCATCTTTCCAGTA+GGG + chr2.1:23601883-23601902 None:intergenic 40.0%
ATTTCCCATGCAAATCCTCT+TGG + chr2.1:23601776-23601795 None:intergenic 40.0%
CCATCAAAGACAAATCGTTC+AGG - chr2.1:23601377-23601396 MS.gene63731:intron 40.0%
CCTGAACGATTTGTCTTTGA+TGG + chr2.1:23601380-23601399 None:intergenic 40.0%
CGAACAAACGATTGTGAAGA+TGG - chr2.1:23601123-23601142 MS.gene63731:CDS 40.0%
TATATGCGTCAGTATCGTGT+CGG + chr2.1:23600605-23600624 None:intergenic 40.0%
TGCTATTAAGTCATGGGAGA+TGG - chr2.1:23600353-23600372 MS.gene63731:intron 40.0%
TGTTTCCTCCAATGATCCTT+CGG + chr2.1:23600325-23600344 None:intergenic 40.0%
TTCAAACCCAGCATCATAAC+AGG + chr2.1:23601159-23601178 None:intergenic 40.0%
TTCGGATGATACACAAGTGA+AGG + chr2.1:23600976-23600995 None:intergenic 40.0%
! CACTTTGAAGGTTGAAGAAG+TGG - chr2.1:23602621-23602640 MS.gene63731:CDS 40.0%
! CTTTTCCAAGAGGATTTGCA+TGG - chr2.1:23601768-23601787 MS.gene63731:intron 40.0%
! GAATGGACATGCTGAAGTTT+TGG + chr2.1:23602704-23602723 None:intergenic 40.0%
! TAATTGACTCCTATCCACCT+TGG - chr2.1:23600715-23600734 MS.gene63731:intron 40.0%
! TGTTTTCCAAGCGATGATTC+AGG - chr2.1:23600816-23600835 MS.gene63731:intron 40.0%
!! GCTTTCAAGTTTAGGCATTG+GGG - chr2.1:23601827-23601846 MS.gene63731:intron 40.0%
AAGAAAATACCATGGGGCCA+TGG + chr2.1:23602088-23602107 None:intergenic 45.0%
AATATCCAGTGGAGACATGG+AGG - chr2.1:23600147-23600166 MS.gene63731:CDS 45.0%
AGAGGGTGGTGATTTCACTT+TGG + chr2.1:23600220-23600239 None:intergenic 45.0%
ATCAGTGTTCGTGTCGTGTT+TGG - chr2.1:23600666-23600685 MS.gene63731:intron 45.0%
ATTTCTAATTGCAGGCAGGG+AGG - chr2.1:23601613-23601632 MS.gene63731:intron 45.0%
CTAGGTGGATGACACTTTGA+AGG - chr2.1:23602609-23602628 MS.gene63731:CDS 45.0%
GAGAATATCCAGTGGAGACA+TGG - chr2.1:23600144-23600163 MS.gene63731:CDS 45.0%
GATTAGACGTGTCCTGGTAT+AGG - chr2.1:23600560-23600579 MS.gene63731:intron 45.0%
GCAGAGGAAACTCTAAGCAT+AGG - chr2.1:23601644-23601663 MS.gene63731:intron 45.0%
GGAAAGATGGTCCAATTCTC+TGG - chr2.1:23601887-23601906 MS.gene63731:intron 45.0%
GTGGAGATTTACTATGACCC+AGG - chr2.1:23602640-23602659 MS.gene63731:CDS 45.0%
GTTTCCTCCAATGATCCTTC+GGG + chr2.1:23600324-23600343 None:intergenic 45.0%
TAATTCGGAATTCGGCCGTT+TGG + chr2.1:23601452-23601471 None:intergenic 45.0%
TATGAAGAACGCACACTCCT+CGG - chr2.1:23600538-23600557 MS.gene63731:intron 45.0%
TATGACCCAGGAGAGTTGTT+TGG - chr2.1:23602652-23602671 MS.gene63731:CDS 45.0%
TATGTGATAGGTCGGAGATG+TGG + chr2.1:23602378-23602397 None:intergenic 45.0%
TCCTTCCTTCTTCAAAGAGC+TGG + chr2.1:23600197-23600216 None:intergenic 45.0%
TGCTATCTCCGCTTGATAGA+AGG + chr2.1:23602681-23602700 None:intergenic 45.0%
TGGTTGACAAGACCATAGGT+GGG + chr2.1:23600177-23600196 None:intergenic 45.0%
TTGGACCATCTTTCCAGTAG+GGG + chr2.1:23601882-23601901 None:intergenic 45.0%
TTTAGTGCAAGCAAAGGCCA+TGG - chr2.1:23602068-23602087 MS.gene63731:intron 45.0%
TTTCTAATTGCAGGCAGGGA+GGG - chr2.1:23601614-23601633 MS.gene63731:intron 45.0%
TTTGGAGGCCTTCTATCAAG+CGG - chr2.1:23602670-23602689 MS.gene63731:CDS 45.0%
! ACCAGCTCTTTGAAGAAGGA+AGG - chr2.1:23600193-23600212 MS.gene63731:intron 45.0%
! ATGGTCCAATTCTCTGGCTT+GGG - chr2.1:23601893-23601912 MS.gene63731:intron 45.0%
! CTTCAAAGTGTCATCCACCT+AGG + chr2.1:23602611-23602630 None:intergenic 45.0%
! GTCAACCAGCTCTTTGAAGA+AGG - chr2.1:23600189-23600208 MS.gene63731:CDS 45.0%
! TTTTTGTAGGAATGGCCCGA+AGG - chr2.1:23600306-23600325 MS.gene63731:intron 45.0%
!! AGGCATTGGGGATTCTTTGA+AGG - chr2.1:23601839-23601858 MS.gene63731:intron 45.0%
!!! AATTTTTGAATATTATTAAT+TGG - chr2.1:23601332-23601351 MS.gene63731:intron 5.0%
!!! GATAAAAATTATTTAAATTT+TGG - chr2.1:23600737-23600756 MS.gene63731:intron 5.0%
ACATGCCCCTACTGGAAAGA+TGG - chr2.1:23601874-23601893 MS.gene63731:intron 50.0%
AGAGCGGCTGCAAAGAACAT+TGG - chr2.1:23601037-23601056 MS.gene63731:CDS 50.0%
CTGGTTGACAAGACCATAGG+TGG + chr2.1:23600178-23600197 None:intergenic 50.0%
GAGCTGGTTGACAAGACCAT+AGG + chr2.1:23600181-23600200 None:intergenic 50.0%
GAGTTCCCAAGCCAGAGAAT+TGG + chr2.1:23601901-23601920 None:intergenic 50.0%
GATGGTCCAATTCTCTGGCT+TGG - chr2.1:23601892-23601911 MS.gene63731:intron 50.0%
TGACAAGACCATAGGTGGGA+GGG + chr2.1:23600173-23600192 None:intergenic 50.0%
TGATAGGTCGGAGATGTGGT+AGG + chr2.1:23602374-23602393 None:intergenic 50.0%
TTGACAAGACCATAGGTGGG+AGG + chr2.1:23600174-23600193 None:intergenic 50.0%
TTTAAGGGACATGCCCCTAC+TGG - chr2.1:23601866-23601885 MS.gene63731:intron 50.0%
! GTAGGGGCATGTCCCTTAAA+AGG + chr2.1:23601866-23601885 None:intergenic 50.0%
! GTGTAGGTTGACTGTGTACG+AGG - chr2.1:23602125-23602144 MS.gene63731:intron 50.0%
! TGGTCTTGAAGTCCTGCAAG+CGG + chr2.1:23600395-23600414 None:intergenic 50.0%
ACCAGGACACGTCTAATCCG+AGG + chr2.1:23600558-23600577 None:intergenic 55.0%
AGGCCTCCAAACAACTCTCC+TGG + chr2.1:23602661-23602680 None:intergenic 55.0%
ATGGCCCGAAGGATCATTGG+AGG - chr2.1:23600317-23600336 MS.gene63731:intron 55.0%
CACGACACGTGTCCTATACC+AGG + chr2.1:23600575-23600594 None:intergenic 55.0%
CAGGGAGGGATTAACTGCAG+AGG - chr2.1:23601628-23601647 MS.gene63731:intron 55.0%
GACCCAGGAGAGTTGTTTGG+AGG - chr2.1:23602655-23602674 MS.gene63731:CDS 55.0%
GGAATGGCCCGAAGGATCAT+TGG - chr2.1:23600314-23600333 MS.gene63731:intron 55.0%
GGCCTCCAAACAACTCTCCT+GGG + chr2.1:23602660-23602679 None:intergenic 55.0%
! TCCTCGGATTAGACGTGTCC+TGG - chr2.1:23600554-23600573 MS.gene63731:intron 55.0%
!! CTCTGGCTTGGGAACTCTCA+AGG - chr2.1:23601904-23601923 MS.gene63731:intron 55.0%
AAGCAAAGGCCATGGCCCCA+TGG - chr2.1:23602076-23602095 MS.gene63731:intron 60.0%
GACGCACAAGATCCGCTTGC+AGG - chr2.1:23600380-23600399 MS.gene63731:intron 60.0%
CATGGAGGCCCTCCCACCTA+TGG - chr2.1:23600162-23600181 MS.gene63731:CDS 65.0%
GAGGGCCTCCATGTCTCCAC+TGG + chr2.1:23600155-23600174 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 23600090 23602732 23600090 ID=MS.gene63731
chr2.1 mRNA 23600090 23602732 23600090 ID=MS.gene63731.t1;Parent=MS.gene63731
chr2.1 exon 23602601 23602732 23602601 ID=MS.gene63731.t1.exon1;Parent=MS.gene63731.t1
chr2.1 CDS 23602601 23602732 23602601 ID=cds.MS.gene63731.t1;Parent=MS.gene63731.t1
chr2.1 exon 23602375 23602507 23602375 ID=MS.gene63731.t1.exon2;Parent=MS.gene63731.t1
chr2.1 CDS 23602375 23602507 23602375 ID=cds.MS.gene63731.t1;Parent=MS.gene63731.t1
chr2.1 exon 23600897 23601195 23600897 ID=MS.gene63731.t1.exon3;Parent=MS.gene63731.t1
chr2.1 CDS 23600897 23601195 23600897 ID=cds.MS.gene63731.t1;Parent=MS.gene63731.t1
chr2.1 exon 23600090 23600209 23600090 ID=MS.gene63731.t1.exon4;Parent=MS.gene63731.t1
chr2.1 CDS 23600090 23600209 23600090 ID=cds.MS.gene63731.t1;Parent=MS.gene63731.t1
Gene Sequence

>MS.gene63731

ATGGCTAACATAGTTGCAAAAGACAAGTACAGATCAATTTTACATGATGAAGCTGAGAATATCCAGTGGAGACATGGAGGCCCTCCCACCTATGGTCTTGTCAACCAGCTCTTTGAAGAAGGAAGGACCAAAGTGAAATCACCACCCTCTTAATCTTATTCCTTCTCTTCCTCTCTAGATTATACCATGTAATTCTTTCTCAATTTTTTTAACAAATTTTTGTAGGAATGGCCCGAAGGATCATTGGAGGAAACAGTGCAAAATGCTATTAAGTCATGGGAGATGGAGCTGACGCACAAGATCCGCTTGCAGGACTTCAAGACCATTGTCCCTGAAAAATTCAAGTTCTTTGTTAATGGTAAGCAGTGAATGATTCAAATTTGTTTGGTATGAATCTTTTTCAATGAGAGATTTGATAGCTACTTTGCTTTTATGAATTATATAATTCTATGAAGAACGCACACTCCTCGGATTAGACGTGTCCTGGTATAGGACACGTGTCGTGTCTGACACCGACACGATACTGACGCATATAAATTACATTGAGTTATGCGAAATTATTAGCGGTGTCGACGTATCAGTGTTCGTGTCGTGTTTGGTGTCCATATCAGTGTTTCATGTATTATAATTGACTCCTATCCACCTTGGATAAAAATTATTTAAATTTTGGTGGGATACATGTTTTTATCATATTTTTATTTCTCTTTTTAATCAGTTTAGGATACATGTTTTCCAAGCGATGATTCAGGAAAAATAAGTTTTTCCTCACGGTAATGAATAATTGTTGCATGGATACATCATCGATCCTATTAGTATATTCATTAACTTTTTAATAAAAACAATGAATTTGCAAACAAAGTTCTCGTAATAACCTAAAGTGATTCCTTCACTTGTGTATCATCCGAAGTAAAAATTATAGCTGTTAGTGTTTTGTTCTTTCTAGTAGTAGAGCGGCTGCAAAGAACATTGGTGTTTTGTTTCTTTTGTTAGCTCTTGTACTTTGTAAGAAACTTTGTATGATGTTGTCAACTTTCGAACAAACGATTGTGAAGATGGGTAGAATTTTCCTGTTATGATGCTGGGTTTGAATTTTTATTAAAATAATTTTGATTCGTCAAAAAACAAAGGAGAGAAAAACGATGCAAATATAGATTATAAACGAAGAAAAGATTGTAAAGTTAGCTATGATTTTTTTAGGGGATTAGCGCGATTAAAAGTTAGACTAAAAACATATGCAAACAAAATTTTTGAATATTATTAATTGGATTCAAGTGGTTGGTGAGCACTCCATCAAAGACAAATCGTTCAGGAGAATGACTTTGATTTCTGGGTGAATAATCTTTGATCAGACTATACTTACCAAACGGCCGAATTCCGAATTACCATAACTCATACCTCTTAGAATCGGAGTTTAATACAAAAAATATCAAAATTTGAGATCAATTGGATTTCCTGTATCTAATTTCTATAGTTAATTCAATTTGTTCTAGTGAATATAATTAAAATTCTTAACATAATTCAATATTTCTAATTGCAGGCAGGGAGGGATTAACTGCAGAGGAAACTCTAAGCATAGGAAGTTATAATGCATTGTTGAAAAGTTCTCTGCCTGAAGATTTCAAGCCATACAAGTCAAATGAAGAGACTTTTGATTCATCTCATGAAGCCTTCAAATCAGCTTTTCCAAGAGGATTTGCATGGGAAATCATTAAAGTTTACACAGGACCACCTGAAATTGCTTTCAAGTTTAGGCATTGGGGATTCTTTGAAGGTCCTTTTAAGGGACATGCCCCTACTGGAAAGATGGTCCAATTCTCTGGCTTGGGAACTCTCAAGGTATGTTTCTAATATTATTATTTTTATGATCTGAATTTAATTGTTTGGCATAGATCAAAAGCTTAATAATCCTTGATCATTTTAAATTTTTGAGTGAAACAAATGCTAATTTGTACCATGAATTGAAAATTAGTATTTGGTTTTTAGTGCAAGCAAAGGCCATGGCCCCATGGTATTTTCTTATTAATTTGTGTTGCGTGTGTAGGTTGACTGTGTACGAGGCTGTAATCAAATAGAAAGGAAGATACCAAGGGATATTATTAAAATTTAAATATAATAAAGGAAGGATAATATTGAAATATAAAGAGATGATAACATTGACATTTGAAAGCTTGACCAAAAAAACATTGAAATTTGAAAGAAAATGATAAAAAGTCGTTTAAGATTTGAGATACGAAAACTGAAAAAACACAAGAGAGAACAAATTTTATCTTGTATCTCTCTTCCTACCACATCTCCGACCTATCACATATATGATATATCATATCACCCTCTTATATATGAATCTCTCCGCATTTATACACTTTTAGAGTGTCTAAGAAACCTTTTCCATTAATTTTAGATTATCATTTATTTTACTCCACCAGTTTTTATTCTCTTACTCCACCTTATGAGAACAACTTTTTATCACCCTCTATATTTTATACATCACTATCATCACTAATGAACAATAATTTTTTAACCTAGGTGGATGACACTTTGAAGGTTGAAGAAGTGGAGATTTACTATGACCCAGGAGAGTTGTTTGGAGGCCTTCTATCAAGCGGAGATAGCACCAAAACTTCAGCATGTCCATTCTCCAATTAA
Protein sequence

>MS.gene63731.t1

MANIVAKDKYRSILHDEAENIQWRHGGPPTYGLVNQLFEEGRTKEWPEGSLEETVQNAIKSWEMELTHKIRLQDFKTIVPEKFKFFVNGREGLTAEETLSIGSYNALLKSSLPEDFKPYKSNEETFDSSHEAFKSAFPRGFAWEIIKVYTGPPEIAFKFRHWGFFEGPFKGHAPTGKMVQFSGLGTLKVDDTLKVEEVEIYYDPGELFGGLLSSGDSTKTSACPFSN