Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63907.t1 | XP_024639804.1 | 95.6 | 473 | 21 | 0 | 1 | 473 | 1 | 473 | 4.30E-147 | 531.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63907.t1 | G7K4J5 | 92.2 | 489 | 22 | 1 | 1 | 473 | 1 | 489 | 2.1e-143 | 518.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene63907 | 0.816399 | 5.64E-52 | -1.69E-46 |
| MS.gene050762 | MS.gene63907 | 0.811258 | 7.66E-51 | -1.69E-46 |
| MS.gene050763 | MS.gene63907 | 0.810072 | 1.38E-50 | -1.69E-46 |
| MS.gene051245 | MS.gene63907 | 0.812328 | 4.48E-51 | -1.69E-46 |
| MS.gene052856 | MS.gene63907 | 0.836407 | 9.53E-57 | -1.69E-46 |
| MS.gene055133 | MS.gene63907 | 0.831435 | 1.67E-55 | -1.69E-46 |
| MS.gene056069 | MS.gene63907 | -0.800583 | 1.35E-48 | -1.69E-46 |
| MS.gene057057 | MS.gene63907 | 0.863972 | 1.70E-64 | -1.69E-46 |
| MS.gene057234 | MS.gene63907 | 0.801984 | 6.96E-49 | -1.69E-46 |
| MS.gene058182 | MS.gene63907 | 0.842417 | 2.62E-58 | -1.69E-46 |
| MS.gene058238 | MS.gene63907 | 0.810422 | 1.16E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene63907 | 0.819901 | 9.10E-53 | -1.69E-46 |
| MS.gene060084 | MS.gene63907 | 0.812639 | 3.83E-51 | -1.69E-46 |
| MS.gene060165 | MS.gene63907 | 0.838278 | 3.16E-57 | -1.69E-46 |
| MS.gene060619 | MS.gene63907 | 0.827857 | 1.24E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63907.t1 | MTR_5g095050 | 88.848 | 547 | 32 | 2 | 1 | 518 | 1 | 547 | 0.0 | 925 |
| MS.gene63907.t1 | MTR_5g094950 | 47.711 | 415 | 140 | 8 | 1 | 392 | 1 | 361 | 3.86e-89 | 285 |
| MS.gene63907.t1 | MTR_5g094970 | 46.356 | 343 | 121 | 6 | 74 | 395 | 5 | 305 | 4.77e-69 | 225 |
| MS.gene63907.t1 | MTR_5g094850 | 36.207 | 406 | 153 | 8 | 3 | 404 | 1 | 304 | 2.01e-50 | 180 |
| MS.gene63907.t1 | MTR_5g094850 | 36.207 | 406 | 153 | 8 | 3 | 404 | 1 | 304 | 7.08e-50 | 179 |
| MS.gene63907.t1 | MTR_5g094920 | 37.621 | 412 | 169 | 11 | 1 | 382 | 1 | 354 | 1.08e-49 | 179 |
| MS.gene63907.t1 | MTR_5g094960 | 41.264 | 269 | 117 | 6 | 1 | 263 | 1 | 234 | 3.46e-39 | 149 |
| MS.gene63907.t1 | MTR_5g094960 | 38.966 | 290 | 136 | 7 | 219 | 484 | 97 | 369 | 5.12e-37 | 143 |
| MS.gene63907.t1 | MTR_5g077500 | 43.103 | 232 | 101 | 4 | 179 | 399 | 40 | 251 | 1.52e-34 | 132 |
| MS.gene63907.t1 | MTR_5g094990 | 45.714 | 175 | 75 | 2 | 252 | 406 | 127 | 301 | 9.11e-33 | 131 |
| MS.gene63907.t1 | MTR_5g094990 | 35.207 | 338 | 162 | 10 | 1 | 329 | 1 | 290 | 5.02e-29 | 120 |
| MS.gene63907.t1 | MTR_5g094910 | 37.500 | 248 | 102 | 6 | 154 | 382 | 30 | 243 | 4.51e-27 | 113 |
| MS.gene63907.t1 | MTR_5g095390 | 42.929 | 198 | 89 | 5 | 3 | 193 | 1 | 181 | 2.07e-26 | 110 |
| MS.gene63907.t1 | MTR_5g095370 | 35.196 | 179 | 82 | 4 | 1 | 176 | 1 | 148 | 1.47e-17 | 82.4 |
| MS.gene63907.t1 | MTR_1g071620 | 40.441 | 136 | 55 | 3 | 255 | 389 | 65 | 175 | 4.88e-16 | 77.8 |
| MS.gene63907.t1 | MTR_5g095400 | 40.000 | 135 | 64 | 3 | 35 | 166 | 5 | 125 | 1.72e-14 | 76.6 |
| MS.gene63907.t1 | MTR_5g095430 | 38.462 | 130 | 63 | 3 | 40 | 166 | 1 | 116 | 3.83e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 106 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTCAACACTTCAAGTTCA+TGG | 0.265620 | 5.1:+76046459 | None:intergenic |
| GCTTAAATACTTACATTTGT+AGG | 0.271720 | 5.1:+76045110 | None:intergenic |
| GGAGAAACTCTTAAGGTTAA+AGG | 0.271874 | 5.1:-76046696 | MS.gene63907:CDS |
| TGAAACAGTAAACAAGAATT+TGG | 0.280388 | 5.1:-76045988 | MS.gene63907:CDS |
| ATTTAAGCTCATCAATAGTT+TGG | 0.295375 | 5.1:+76045833 | None:intergenic |
| GACTGGTGAGATGGAGAATA+AGG | 0.296831 | 5.1:-76046096 | MS.gene63907:CDS |
| AGTTGAAGTGTGAGGTTAAT+AGG | 0.300952 | 5.1:-76046172 | MS.gene63907:CDS |
| AGTTGGAGTGTGAGGTTAAT+AGG | 0.300952 | 5.1:-76046340 | MS.gene63907:CDS |
| TGAGATGGAGAATAAGGTTT+TGG | 0.325391 | 5.1:-76046090 | MS.gene63907:CDS |
| TTAATAAGTTGAAGGAAGAT+AGG | 0.328036 | 5.1:-76046241 | MS.gene63907:CDS |
| GTCAAAATCATTACATGTTA+AGG | 0.357681 | 5.1:-76045009 | MS.gene63907:CDS |
| AGCAATACTTGAACAAGATC+TGG | 0.362926 | 5.1:+76046845 | None:intergenic |
| GGGCTGCTTGCATCTTTGCC+TGG | 0.376137 | 5.1:+76044879 | None:intergenic |
| GTCCATGCATGCAGGCAATT+AGG | 0.379329 | 5.1:-76044770 | MS.gene63907:intron |
| GGAAAGACAACAACTTGAAA+TGG | 0.380275 | 5.1:-76046717 | MS.gene63907:CDS |
| TGAAAGAGTTGAAGGTGTTT+TGG | 0.381818 | 5.1:-76046798 | MS.gene63907:CDS |
| GGTTGAAGTGTGAGGTTGAC+AGG | 0.395371 | 5.1:-76046508 | MS.gene63907:CDS |
| CTTAGAGCAGAATGTTGAAA+TGG | 0.410048 | 5.1:-76046738 | MS.gene63907:CDS |
| ATACTTACATTTGTAGGATC+AGG | 0.410411 | 5.1:+76045116 | None:intergenic |
| ATGGAAACTCTTGACTTAGA+AGG | 0.415536 | 5.1:-76046878 | MS.gene63907:CDS |
| GCAACTGGTGCATTTGCAAC+AGG | 0.416299 | 5.1:+76045152 | None:intergenic |
| TTGAAATGGAGAAACTCTTA+AGG | 0.417844 | 5.1:-76046703 | MS.gene63907:CDS |
| TAATAGGTTGAAGGAAGATA+TGG | 0.418849 | 5.1:-76046324 | MS.gene63907:CDS |
| GATCTTGTTCAAGTATTGCT+TGG | 0.420517 | 5.1:-76046842 | MS.gene63907:CDS |
| TTGAAAACCAAGATGATTGC+TGG | 0.423791 | 5.1:-76044903 | MS.gene63907:CDS |
| GCCTGGACCAGCAATCATCT+TGG | 0.434652 | 5.1:+76044896 | None:intergenic |
| AAGGAAGATAGGGTGGAGGA+TGG | 0.446522 | 5.1:-76046230 | MS.gene63907:CDS |
| AAGTTATAATGCTCTCTTGA+AGG | 0.449736 | 5.1:-76046615 | MS.gene63907:CDS |
| GAGTGATGAGCTAGAGTGTG+AGG | 0.452371 | 5.1:-76046264 | MS.gene63907:CDS |
| TCAGCAGCCATAAAATCAAC+TGG | 0.457108 | 5.1:+76045777 | None:intergenic |
| TTTGGAGTTGACAAAGTTGA+AGG | 0.457739 | 5.1:-76046072 | MS.gene63907:CDS |
| TTTGTAGGATCAGGCACATA+AGG | 0.460936 | 5.1:+76045125 | None:intergenic |
| AGCCAGGTCTAGTCATGTTA+AGG | 0.462079 | 5.1:-76044970 | MS.gene63907:CDS |
| TTGACATATTACTCGCGTCT+TGG | 0.462570 | 5.1:-76045908 | MS.gene63907:CDS |
| AAAGTTAAAGATGCATCATC+AGG | 0.464717 | 5.1:-76045723 | MS.gene63907:intron |
| GAAACTTATGAAAGAGTTGA+AGG | 0.466139 | 5.1:-76046806 | MS.gene63907:CDS |
| AACATGACTAGACCTGGCTT+TGG | 0.471235 | 5.1:+76044974 | None:intergenic |
| GTGTGAGGTTAATAGGTTGA+AGG | 0.471254 | 5.1:-76046333 | MS.gene63907:CDS |
| GGCACATAAGGTATTGCAAC+TGG | 0.471489 | 5.1:+76045137 | None:intergenic |
| GTGTGAGGTTAATAAGTTGA+AGG | 0.473823 | 5.1:-76046249 | MS.gene63907:CDS |
| CTTGAACCTAAAATCGAACC+TGG | 0.474651 | 5.1:-76046965 | MS.gene63907:CDS |
| TTAATAAGTTGAAAGAAGAA+AGG | 0.475430 | 5.1:-76046409 | MS.gene63907:CDS |
| ACCAAGATGATTGCTGGTCC+AGG | 0.475629 | 5.1:-76044897 | MS.gene63907:CDS |
| TCTATCACTAGACCTGACTT+TGG | 0.479541 | 5.1:+76044935 | None:intergenic |
| TTCTAAGAAGGAGAAACGTT+GGG | 0.480244 | 5.1:-76046529 | MS.gene63907:CDS |
| AGCTTAAATGTCTCTGGTGG+TGG | 0.480275 | 5.1:-76045819 | MS.gene63907:CDS |
| AAAGAAGAAAGGGTGGAGGA+TGG | 0.483082 | 5.1:-76046398 | MS.gene63907:CDS |
| TCTGCTCTAAGAGTTGAATC+TGG | 0.493051 | 5.1:+76046750 | None:intergenic |
| AGACTTCATATGACATTAGC+AGG | 0.496406 | 5.1:-76044740 | MS.gene63907:CDS |
| CTTGCAGAAGGTGCTACAAT+TGG | 0.498312 | 5.1:+76045185 | None:intergenic |
| ATCAAGAATCACGTGGTTGG+AGG | 0.498362 | 5.1:+76046934 | None:intergenic |
| TTGATGAGCTTAAATGTCTC+TGG | 0.501390 | 5.1:-76045825 | MS.gene63907:CDS |
| AAGGAAGATATGGTGGAGGG+TGG | 0.509218 | 5.1:-76046314 | MS.gene63907:CDS |
| TAATAAGTTGAAGGAAGATA+GGG | 0.510480 | 5.1:-76046240 | MS.gene63907:CDS |
| GCGGATGATGGCTGTGAGCT+TGG | 0.513466 | 5.1:-76046134 | MS.gene63907:CDS |
| ACTCTTAAGGTTAAAGGCTG+AGG | 0.519219 | 5.1:-76046690 | MS.gene63907:CDS |
| TAATAAGTTGAAAGAAGAAA+GGG | 0.520930 | 5.1:-76046408 | MS.gene63907:CDS |
| AGAGACGAAGATGATGAAGT+TGG | 0.521296 | 5.1:-76046911 | MS.gene63907:CDS |
| GTTGAAGGAAGATAGGGTGG+AGG | 0.521973 | 5.1:-76046234 | MS.gene63907:CDS |
| AAGAAGAAAGGGTGGAGGAT+GGG | 0.524336 | 5.1:-76046397 | MS.gene63907:CDS |
| TTTCTAAGAAGGAGAAACGT+TGG | 0.528902 | 5.1:-76046530 | MS.gene63907:CDS |
| GGAAGAGTTAAAGAAAAGAG+AGG | 0.532934 | 5.1:-76046669 | MS.gene63907:CDS |
| AGGAAGATAGGGTGGAGGAT+GGG | 0.537473 | 5.1:-76046229 | MS.gene63907:CDS |
| TAGGTTGAAGGAAGATATGG+TGG | 0.538319 | 5.1:-76046321 | MS.gene63907:CDS |
| TGGCAACTATAAGAGAATTG+AGG | 0.540056 | 5.1:-76045968 | MS.gene63907:CDS |
| ATGTCAAGAAAGCCAAAGCC+AGG | 0.540319 | 5.1:-76044986 | MS.gene63907:CDS |
| GAAGATTGTATTGTGTGGGC+TGG | 0.542503 | 5.1:-76046038 | MS.gene63907:CDS |
| TAAGTTGAAGGAAGATAGGG+TGG | 0.544598 | 5.1:-76046237 | MS.gene63907:CDS |
| TGAAGTTGGAGCATTTCCTA+TGG | 0.545820 | 5.1:-76046897 | MS.gene63907:CDS |
| TGGTTGGAGGAAGGTGACCC+AGG | 0.547723 | 5.1:+76046947 | None:intergenic |
| GTGTGAGGTTAATAGGTTGA+CGG | 0.547979 | 5.1:-76046165 | MS.gene63907:CDS |
| AGGAAGATATGGTGGAGGGT+GGG | 0.550407 | 5.1:-76046313 | MS.gene63907:CDS |
| ATTGCTTGGATCTTTACAGA+TGG | 0.550510 | 5.1:-76046828 | MS.gene63907:CDS |
| GCAATACTTGAACAAGATCT+GGG | 0.555962 | 5.1:+76046846 | None:intergenic |
| CAAAGATGCAAGCAGCCCAT+TGG | 0.565479 | 5.1:-76044874 | MS.gene63907:intron |
| TCTATCAAGAATCACGTGGT+TGG | 0.566169 | 5.1:+76046931 | None:intergenic |
| TCTGGTGGTGGAAACAATGA+GGG | 0.566395 | 5.1:-76045807 | MS.gene63907:CDS |
| TAAGTTGAAAGAAGAAAGGG+TGG | 0.575684 | 5.1:-76046405 | MS.gene63907:CDS |
| CTCTGGTGGTGGAAACAATG+AGG | 0.577778 | 5.1:-76045808 | MS.gene63907:CDS |
| AGTTGGTCATGTCGAAGTAC+CGG | 0.578493 | 5.1:-76045210 | MS.gene63907:CDS |
| TATAATGCTCTCTTGAAGGA+AGG | 0.584603 | 5.1:-76046611 | MS.gene63907:CDS |
| GAATGGTGAGTTGGAGTGTG+AGG | 0.586676 | 5.1:-76046432 | MS.gene63907:CDS |
| GTTGAAAGAAGAAAGGGTGG+AGG | 0.590291 | 5.1:-76046402 | MS.gene63907:CDS |
| AGAATCACGTGGTTGGAGGA+AGG | 0.592347 | 5.1:+76046938 | None:intergenic |
| GAAGGTGCTACAATTGGTGC+CGG | 0.596125 | 5.1:+76045191 | None:intergenic |
| TCTAAGTCAAGAGTTTCCAT+AGG | 0.597975 | 5.1:+76046881 | None:intergenic |
| GTTGAAGGAAGATATGGTGG+AGG | 0.598207 | 5.1:-76046318 | MS.gene63907:CDS |
| GAGACAAAAGAATGGTGAGT+TGG | 0.607745 | 5.1:-76046441 | MS.gene63907:CDS |
| TTGAAGGAAGATATGGTGGA+GGG | 0.608134 | 5.1:-76046317 | MS.gene63907:CDS |
| TCTCTTGAAGGAAGGCAAGA+CGG | 0.610347 | 5.1:-76046603 | MS.gene63907:CDS |
| GAATGATGAGTTGGAGTGTG+AGG | 0.613027 | 5.1:-76046348 | MS.gene63907:CDS |
| ATCCTTAACATGACTAGACC+TGG | 0.622257 | 5.1:+76044968 | None:intergenic |
| TAAGTTGACACAAGAAAGTG+AGG | 0.628177 | 5.1:-76046564 | MS.gene63907:CDS |
| AAACGTTGGGTTGAAGTGTG+AGG | 0.632328 | 5.1:-76046516 | MS.gene63907:CDS |
| GGAGGAAGATTGTATTGTGT+GGG | 0.635950 | 5.1:-76046042 | MS.gene63907:CDS |
| GGATCAACTTGACTTGCAGA+AGG | 0.646109 | 5.1:+76045173 | None:intergenic |
| CTGGTGGTGGAAACAATGAG+GGG | 0.648857 | 5.1:-76045806 | MS.gene63907:CDS |
| GAAGTGTTGAGACAAAAGAA+TGG | 0.649570 | 5.1:-76046449 | MS.gene63907:CDS |
| GGGAGGAAGATTGTATTGTG+TGG | 0.661249 | 5.1:-76046043 | MS.gene63907:CDS |
| CGTCTCTATCAAGAATCACG+TGG | 0.663157 | 5.1:+76046927 | None:intergenic |
| GAATGATGAGTTGAAGTGTG+AGG | 0.673142 | 5.1:-76046180 | MS.gene63907:CDS |
| TTGAACCTAAAATCGAACCT+GGG | 0.681572 | 5.1:-76046964 | MS.gene63907:CDS |
| ATGAGCTTAAATGTCTCTGG+TGG | 0.688563 | 5.1:-76045822 | MS.gene63907:CDS |
| CTTCATATGACATTAGCAGG+AGG | 0.696178 | 5.1:-76044737 | MS.gene63907:CDS |
| TGGTGGTGGAAACAATGAGG+GGG | 0.698952 | 5.1:-76045805 | MS.gene63907:CDS |
| GCAGCCATAAAATCAACTGG+AGG | 0.708098 | 5.1:+76045780 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATACAAACATTATACATA+AGG | + | chr5.1:76046259-76046278 | None:intergenic | 15.0% |
| !! | ATATAGTGTAAAGAAATTAT+AGG | + | chr5.1:76046209-76046228 | None:intergenic | 15.0% |
| !! | TATAGTGTAAAGAAATTATA+GGG | + | chr5.1:76046208-76046227 | None:intergenic | 15.0% |
| !!! | TTATACATTATTTTAGACTA+GGG | - | chr5.1:76046374-76046393 | MS.gene63907:CDS | 15.0% |
| !!! | TTTATACATTATTTTAGACT+AGG | - | chr5.1:76046373-76046392 | MS.gene63907:CDS | 15.0% |
| !! | ATGAAATCATATATATTCGA+AGG | - | chr5.1:76046165-76046184 | MS.gene63907:CDS | 20.0% |
| !! | TATATATGATTTCATCAATG+AGG | + | chr5.1:76046160-76046179 | None:intergenic | 20.0% |
| !!! | AAACTATTGATTTTCTAAGA+AGG | - | chr5.1:76045155-76045174 | MS.gene63907:CDS | 20.0% |
| !!! | ATATTTTATTGTATCTCTAG+TGG | - | chr5.1:76046293-76046312 | MS.gene63907:CDS | 20.0% |
| !!! | TAATAAGTTGAAAGAAGAAA+GGG | - | chr5.1:76045288-76045307 | MS.gene63907:intron | 20.0% |
| !!! | TATTTTATTGTATCTCTAGT+GGG | - | chr5.1:76046294-76046313 | MS.gene63907:CDS | 20.0% |
| !!! | TGTAAGTTATGTATTTTACA+GGG | - | chr5.1:76046652-76046671 | MS.gene63907:CDS | 20.0% |
| !!! | TTAATAAGTTGAAAGAAGAA+AGG | - | chr5.1:76045287-76045306 | MS.gene63907:intron | 20.0% |
| ! | AACATATCAGCTAAGATATT+TGG | + | chr5.1:76046415-76046434 | None:intergenic | 25.0% |
| ! | ACATATCAGCTAAGATATTT+GGG | + | chr5.1:76046414-76046433 | None:intergenic | 25.0% |
| ! | ATTTAAGCTCATCAATAGTT+TGG | + | chr5.1:76045866-76045885 | None:intergenic | 25.0% |
| ! | GCTTAAATACTTACATTTGT+AGG | + | chr5.1:76046589-76046608 | None:intergenic | 25.0% |
| ! | GTCAAAATCATTACATGTTA+AGG | - | chr5.1:76046687-76046706 | MS.gene63907:CDS | 25.0% |
| ! | TGAAACAGTAAACAAGAATT+TGG | - | chr5.1:76045708-76045727 | MS.gene63907:intron | 25.0% |
| !! | GTATTTTACAGGGAAATAAA+AGG | - | chr5.1:76046662-76046681 | MS.gene63907:CDS | 25.0% |
| !! | GTGTAAGTTATGTATTTTAC+AGG | - | chr5.1:76046651-76046670 | MS.gene63907:CDS | 25.0% |
| !! | TAATAAGTTGAAGGAAGATA+GGG | - | chr5.1:76045456-76045475 | MS.gene63907:intron | 25.0% |
| !! | TGGGTATTGTATTTCTATTA+GGG | - | chr5.1:76046313-76046332 | MS.gene63907:CDS | 25.0% |
| !! | TTAATAAGTTGAAGGAAGAT+AGG | - | chr5.1:76045455-76045474 | MS.gene63907:intron | 25.0% |
| AAAGTTAAAGATGCATCATC+AGG | - | chr5.1:76045973-76045992 | MS.gene63907:CDS | 30.0% | |
| AAATGTTTGGTTAGATTGCT+AGG | - | chr5.1:76046028-76046047 | MS.gene63907:CDS | 30.0% | |
| AAGTTATAATGCTCTCTTGA+AGG | - | chr5.1:76045081-76045100 | MS.gene63907:intron | 30.0% | |
| ACTACATGCTTCAATAAAAC+AGG | + | chr5.1:76046082-76046101 | None:intergenic | 30.0% | |
| ATACTTACATTTGTAGGATC+AGG | + | chr5.1:76046583-76046602 | None:intergenic | 30.0% | |
| GAAACTTATGAAAGAGTTGA+AGG | - | chr5.1:76044890-76044909 | MS.gene63907:CDS | 30.0% | |
| GACAAAGTTGAAGGAAAAAT+GGG | - | chr5.1:76045633-76045652 | MS.gene63907:intron | 30.0% | |
| GAGAAAAAAGAATGATGAGT+TGG | - | chr5.1:76045339-76045358 | MS.gene63907:intron | 30.0% | |
| GCTGGAATTGAGATTAAAAA+TGG | - | chr5.1:76045676-76045695 | MS.gene63907:intron | 30.0% | |
| GGTATGGAATTGAATTCAAT+AGG | - | chr5.1:76045994-76046013 | MS.gene63907:CDS | 30.0% | |
| GGTGTGATCAAATAAATGTT+TGG | - | chr5.1:76046015-76046034 | MS.gene63907:CDS | 30.0% | |
| TCGAAGGTTAAATTAGTAAG+TGG | - | chr5.1:76046181-76046200 | MS.gene63907:CDS | 30.0% | |
| TCTTGCATGAAAAAGTTTCA+AGG | - | chr5.1:76045827-76045846 | MS.gene63907:CDS | 30.0% | |
| TGACAAAGTTGAAGGAAAAA+TGG | - | chr5.1:76045632-76045651 | MS.gene63907:intron | 30.0% | |
| TTGAAATGGAGAAACTCTTA+AGG | - | chr5.1:76044993-76045012 | MS.gene63907:CDS | 30.0% | |
| ! | GGGTATTGTATTTCTATTAG+GGG | - | chr5.1:76046314-76046333 | MS.gene63907:CDS | 30.0% |
| ! | GTGGGTATTGTATTTCTATT+AGG | - | chr5.1:76046312-76046331 | MS.gene63907:CDS | 30.0% |
| ! | TAATAGGTTGAAGGAAGATA+TGG | - | chr5.1:76045372-76045391 | MS.gene63907:intron | 30.0% |
| ! | TAATAGGTTGACGGAAAAAA+CGG | - | chr5.1:76045540-76045559 | MS.gene63907:intron | 30.0% |
| !! | ATAACTTGTTTGAACTTGTG+AGG | - | chr5.1:76046114-76046133 | MS.gene63907:CDS | 30.0% |
| !! | GTTTTATTGAAGCATGTAGT+AGG | - | chr5.1:76046082-76046101 | MS.gene63907:CDS | 30.0% |
| AAAGTTGAAGGAAAAATGGG+AGG | - | chr5.1:76045636-76045655 | MS.gene63907:intron | 35.0% | |
| AGACTTCATATGACATTAGC+AGG | - | chr5.1:76046956-76046975 | MS.gene63907:CDS | 35.0% | |
| AGCAATACTTGAACAAGATC+TGG | + | chr5.1:76044854-76044873 | None:intergenic | 35.0% | |
| AGTTGAAGTGTGAGGTTAAT+AGG | - | chr5.1:76045524-76045543 | MS.gene63907:intron | 35.0% | |
| ATGGAAACTCTTGACTTAGA+AGG | - | chr5.1:76044818-76044837 | MS.gene63907:intron | 35.0% | |
| ATTGCTTGGATCTTTACAGA+TGG | - | chr5.1:76044868-76044887 | MS.gene63907:intron | 35.0% | |
| CACTGTCTTCAATTACCAAT+GGG | + | chr5.1:76046840-76046859 | None:intergenic | 35.0% | |
| CTTAGAGCAGAATGTTGAAA+TGG | - | chr5.1:76044958-76044977 | MS.gene63907:CDS | 35.0% | |
| GATGATATTGATGAAGGTGA+TGG | - | chr5.1:76046868-76046887 | MS.gene63907:CDS | 35.0% | |
| GCAATACTTGAACAAGATCT+GGG | + | chr5.1:76044853-76044872 | None:intergenic | 35.0% | |
| GGAAAGACAACAACTTGAAA+TGG | - | chr5.1:76044979-76044998 | MS.gene63907:CDS | 35.0% | |
| GGAAGAGTTAAAGAAAAGAG+AGG | - | chr5.1:76045027-76045046 | MS.gene63907:intron | 35.0% | |
| GGAGAAACTCTTAAGGTTAA+AGG | - | chr5.1:76045000-76045019 | MS.gene63907:CDS | 35.0% | |
| GGGGTTGTATCATATTATGT+AGG | - | chr5.1:76046333-76046352 | MS.gene63907:CDS | 35.0% | |
| GTAATTGAAGACAGTGATGA+GGG | - | chr5.1:76046844-76046863 | MS.gene63907:CDS | 35.0% | |
| TAAAGATGCATCATCAGGTA+TGG | - | chr5.1:76045978-76045997 | MS.gene63907:CDS | 35.0% | |
| TATAATGCTCTCTTGAAGGA+AGG | - | chr5.1:76045085-76045104 | MS.gene63907:intron | 35.0% | |
| TCACTGTCTTCAATTACCAA+TGG | + | chr5.1:76046841-76046860 | None:intergenic | 35.0% | |
| TCTAAGTCAAGAGTTTCCAT+AGG | + | chr5.1:76044818-76044837 | None:intergenic | 35.0% | |
| TGGCAACTATAAGAGAATTG+AGG | - | chr5.1:76045728-76045747 | MS.gene63907:CDS | 35.0% | |
| TTGAAAACCAAGATGATTGC+TGG | - | chr5.1:76046793-76046812 | MS.gene63907:CDS | 35.0% | |
| TTGAACCTAAAATCGAACCT+GGG | - | chr5.1:76044732-76044751 | MS.gene63907:CDS | 35.0% | |
| TTGATGAGCTTAAATGTCTC+TGG | - | chr5.1:76045871-76045890 | MS.gene63907:CDS | 35.0% | |
| ! | GATCTTGTTCAAGTATTGCT+TGG | - | chr5.1:76044854-76044873 | MS.gene63907:intron | 35.0% |
| ! | GTGTGAGGTTAATAAGTTGA+AGG | - | chr5.1:76045279-76045298 | MS.gene63907:intron | 35.0% |
| ! | TAAGTTGAAAGAAGAAAGGG+TGG | - | chr5.1:76045291-76045310 | MS.gene63907:intron | 35.0% |
| ! | TAAGTTGACACAAGAAAGTG+AGG | - | chr5.1:76045132-76045151 | MS.gene63907:CDS | 35.0% |
| ! | TGACAGGTTGAACGAAAAAA+GGG | - | chr5.1:76045204-76045223 | MS.gene63907:CDS | 35.0% |
| ! | TGAGATGGAGAATAAGGTTT+TGG | - | chr5.1:76045606-76045625 | MS.gene63907:intron | 35.0% |
| ! | TTCTAAGAAGGAGAAACGTT+GGG | - | chr5.1:76045167-76045186 | MS.gene63907:CDS | 35.0% |
| ! | TTGACAGGTTGAACGAAAAA+AGG | - | chr5.1:76045203-76045222 | MS.gene63907:CDS | 35.0% |
| ! | TTTCTAAGAAGGAGAAACGT+TGG | - | chr5.1:76045166-76045185 | MS.gene63907:CDS | 35.0% |
| ! | TTTGGAGTTGACAAAGTTGA+AGG | - | chr5.1:76045624-76045643 | MS.gene63907:intron | 35.0% |
| !! | GAAGTGTTGAGACAAAAGAA+TGG | - | chr5.1:76045247-76045266 | MS.gene63907:intron | 35.0% |
| !!! | TGAAAGAGTTGAAGGTGTTT+TGG | - | chr5.1:76044898-76044917 | MS.gene63907:CDS | 35.0% |
| AAACAGGAAAATCACGTTCC+AGG | + | chr5.1:76046066-76046085 | None:intergenic | 40.0% | |
| AACAATTCACTCACACACAC+AGG | + | chr5.1:76046617-76046636 | None:intergenic | 40.0% | |
| ACTCTTAAGGTTAAAGGCTG+AGG | - | chr5.1:76045006-76045025 | MS.gene63907:CDS | 40.0% | |
| ACTTGTGAGGCTACTAGTAA+TGG | - | chr5.1:76046127-76046146 | MS.gene63907:CDS | 40.0% | |
| AGAGACGAAGATGATGAAGT+TGG | - | chr5.1:76044785-76044804 | MS.gene63907:intron | 40.0% | |
| AGTTGGAGTGTGAGGTTAAT+AGG | - | chr5.1:76045272-76045291 | MS.gene63907:intron | 40.0% | |
| ATCCTTAACATGACTAGACC+TGG | + | chr5.1:76046731-76046750 | None:intergenic | 40.0% | |
| ATGAGCTTAAATGTCTCTGG+TGG | - | chr5.1:76045874-76045893 | MS.gene63907:CDS | 40.0% | |
| ATGTCGCAAAAACCAAAGTC+AGG | - | chr5.1:76046749-76046768 | MS.gene63907:CDS | 40.0% | |
| CTTCATATGACATTAGCAGG+AGG | - | chr5.1:76046959-76046978 | MS.gene63907:CDS | 40.0% | |
| CTTGAACCTAAAATCGAACC+TGG | - | chr5.1:76044731-76044750 | MS.gene63907:CDS | 40.0% | |
| GAGAAAAATGACTGGTGAGA+TGG | - | chr5.1:76045591-76045610 | MS.gene63907:intron | 40.0% | |
| GAGACAAAAGAATGGTGAGT+TGG | - | chr5.1:76045255-76045274 | MS.gene63907:intron | 40.0% | |
| GAGGGTGATGATATTGATGA+AGG | - | chr5.1:76046862-76046881 | MS.gene63907:CDS | 40.0% | |
| GCATGAAAAAGTTTCAAGGC+TGG | - | chr5.1:76045831-76045850 | MS.gene63907:CDS | 40.0% | |
| GGAGGAAGATTGTATTGTGT+GGG | - | chr5.1:76045654-76045673 | MS.gene63907:intron | 40.0% | |
| GGTAATTGAAGACAGTGATG+AGG | - | chr5.1:76046843-76046862 | MS.gene63907:CDS | 40.0% | |
| GTTTGGTTAGATTGCTAGGT+AGG | - | chr5.1:76046032-76046051 | MS.gene63907:CDS | 40.0% | |
| TCAGCAGCCATAAAATCAAC+TGG | + | chr5.1:76045922-76045941 | None:intergenic | 40.0% | |
| TCTATCAAGAATCACGTGGT+TGG | + | chr5.1:76044768-76044787 | None:intergenic | 40.0% | |
| TCTATCACTAGACCTGACTT+TGG | + | chr5.1:76046764-76046783 | None:intergenic | 40.0% | |
| TGAAAAAGTTTCAAGGCTGG+AGG | - | chr5.1:76045834-76045853 | MS.gene63907:CDS | 40.0% | |
| TTGACATATTACTCGCGTCT+TGG | - | chr5.1:76045788-76045807 | MS.gene63907:CDS | 40.0% | |
| TTTGTAGGATCAGGCACATA+AGG | + | chr5.1:76046574-76046593 | None:intergenic | 40.0% | |
| ! | GAATGATGAGTTGAAGTGTG+AGG | - | chr5.1:76045516-76045535 | MS.gene63907:intron | 40.0% |
| ! | GTCTCAACACTTCAAGTTCA+TGG | + | chr5.1:76045240-76045259 | None:intergenic | 40.0% |
| ! | GTGTGAGGTTAATAGGTTGA+AGG | - | chr5.1:76045363-76045382 | MS.gene63907:intron | 40.0% |
| ! | GTGTGAGGTTAATAGGTTGA+CGG | - | chr5.1:76045363-76045382 | MS.gene63907:intron | 40.0% |
| ! | TAAGTTGAAGGAAGATAGGG+TGG | - | chr5.1:76045459-76045478 | MS.gene63907:intron | 40.0% |
| ! | TAGGTTGAAGGAAGATATGG+TGG | - | chr5.1:76045375-76045394 | MS.gene63907:intron | 40.0% |
| ! | TGAAGTTGGAGCATTTCCTA+TGG | - | chr5.1:76044799-76044818 | MS.gene63907:intron | 40.0% |
| ! | TTGAAGGAAGATATGGTGGA+GGG | - | chr5.1:76045379-76045398 | MS.gene63907:intron | 40.0% |
| !! | GGATCCTCCAGTTGATTTTA+TGG | - | chr5.1:76045912-76045931 | MS.gene63907:CDS | 40.0% |
| !! | GTTTTGGTGAGAAGGGATTT+GGG | - | chr5.1:76044914-76044933 | MS.gene63907:CDS | 40.0% |
| !! | TCTGCTCTAAGAGTTGAATC+TGG | + | chr5.1:76044949-76044968 | None:intergenic | 40.0% |
| !!! | CAGGTTCGATTTTAGGTTCA+AGG | + | chr5.1:76044733-76044752 | None:intergenic | 40.0% |
| !!! | TGAAGGTGTTTTGGTGAGAA+GGG | - | chr5.1:76044907-76044926 | MS.gene63907:CDS | 40.0% |
| !!! | TGTTTTGGTGAGAAGGGATT+TGG | - | chr5.1:76044913-76044932 | MS.gene63907:CDS | 40.0% |
| !!! | TTGAAGGTGTTTTGGTGAGA+AGG | - | chr5.1:76044906-76044925 | MS.gene63907:CDS | 40.0% |
| AAAGAAGAAAGGGTGGAGGA+TGG | - | chr5.1:76045298-76045317 | MS.gene63907:intron | 45.0% | |
| AACATGACTAGACCTGGCTT+TGG | + | chr5.1:76046725-76046744 | None:intergenic | 45.0% | |
| AACGAAAAAAGGGAGGAGGA+AGG | - | chr5.1:76045214-76045233 | MS.gene63907:intron | 45.0% | |
| AAGAAGAAAGGGTGGAGGAT+GGG | - | chr5.1:76045299-76045318 | MS.gene63907:intron | 45.0% | |
| AGATTGCTAGGTAGGTAGCT+TGG | - | chr5.1:76046040-76046059 | MS.gene63907:CDS | 45.0% | |
| AGCCAGGTCTAGTCATGTTA+AGG | - | chr5.1:76046726-76046745 | MS.gene63907:CDS | 45.0% | |
| AGCTTAAATGTCTCTGGTGG+TGG | - | chr5.1:76045877-76045896 | MS.gene63907:CDS | 45.0% | |
| AGTTGGTCATGTCGAAGTAC+CGG | - | chr5.1:76046486-76046505 | MS.gene63907:CDS | 45.0% | |
| ATCAAGAATCACGTGGTTGG+AGG | + | chr5.1:76044765-76044784 | None:intergenic | 45.0% | |
| ATGTCAAGAAAGCCAAAGCC+AGG | - | chr5.1:76046710-76046729 | MS.gene63907:CDS | 45.0% | |
| CCAGAGAGAGACCAAAAGAT+TGG | - | chr5.1:76046904-76046923 | MS.gene63907:CDS | 45.0% | |
| CGTCTCTATCAAGAATCACG+TGG | + | chr5.1:76044772-76044791 | None:intergenic | 45.0% | |
| GAAGATTGTATTGTGTGGGC+TGG | - | chr5.1:76045658-76045677 | MS.gene63907:intron | 45.0% | |
| GACTGGTGAGATGGAGAATA+AGG | - | chr5.1:76045600-76045619 | MS.gene63907:intron | 45.0% | |
| GCAGCCATAAAATCAACTGG+AGG | + | chr5.1:76045919-76045938 | None:intergenic | 45.0% | |
| GGGAGGAAGATTGTATTGTG+TGG | - | chr5.1:76045653-76045672 | MS.gene63907:intron | 45.0% | |
| GGTGTGCAGAGAAAAATGAC+TGG | - | chr5.1:76045583-76045602 | MS.gene63907:intron | 45.0% | |
| GTTGAAAGAAGAAAGGGTGG+AGG | - | chr5.1:76045294-76045313 | MS.gene63907:intron | 45.0% | |
| GTTGAACGAAAAAAGGGAGG+AGG | - | chr5.1:76045210-76045229 | MS.gene63907:CDS | 45.0% | |
| GTTGAAGGAAGATATGGTGG+AGG | - | chr5.1:76045378-76045397 | MS.gene63907:intron | 45.0% | |
| TCTCTTGAAGGAAGGCAAGA+CGG | - | chr5.1:76045093-76045112 | MS.gene63907:intron | 45.0% | |
| ! | AAAGATTGGTCCATGCATGC+AGG | - | chr5.1:76046918-76046937 | MS.gene63907:CDS | 45.0% |
| ! | CAGGTTGAACGAAAAAAGGG+AGG | - | chr5.1:76045207-76045226 | MS.gene63907:CDS | 45.0% |
| ! | CCAATCTTTTGGTCTCTCTC+TGG | + | chr5.1:76046907-76046926 | None:intergenic | 45.0% |
| ! | GAATGATGAGTTGGAGTGTG+AGG | - | chr5.1:76045348-76045367 | MS.gene63907:intron | 45.0% |
| ! | GCATGCATGGACCAATCTTT+TGG | + | chr5.1:76046918-76046937 | None:intergenic | 45.0% |
| ! | TAGGTTGACGGAAAAAACGG+CGG | - | chr5.1:76045543-76045562 | MS.gene63907:intron | 45.0% |
| !! | AAACGTTGGGTTGAAGTGTG+AGG | - | chr5.1:76045180-76045199 | MS.gene63907:CDS | 45.0% |
| !! | CTTGCAGAAGGTGCTACAAT+TGG | + | chr5.1:76046514-76046533 | None:intergenic | 45.0% |
| !! | GGATCAACTTGACTTGCAGA+AGG | + | chr5.1:76046526-76046545 | None:intergenic | 45.0% |
| !! | GGCACATAAGGTATTGCAAC+TGG | + | chr5.1:76046562-76046581 | None:intergenic | 45.0% |
| !! | TCTGGTGGTGGAAACAATGA+GGG | - | chr5.1:76045889-76045908 | MS.gene63907:CDS | 45.0% |
| AAGGAAGATAGGGTGGAGGA+TGG | - | chr5.1:76045466-76045485 | MS.gene63907:intron | 50.0% | |
| ACCAAGATGATTGCTGGTCC+AGG | - | chr5.1:76046799-76046818 | MS.gene63907:CDS | 50.0% | |
| ACGGAAAAAACGGCGGATGA+TGG | - | chr5.1:76045550-76045569 | MS.gene63907:intron | 50.0% | |
| AGAATCACGTGGTTGGAGGA+AGG | + | chr5.1:76044761-76044780 | None:intergenic | 50.0% | |
| AGGAAGATAGGGTGGAGGAT+GGG | - | chr5.1:76045467-76045486 | MS.gene63907:intron | 50.0% | |
| CAAAGATGCAAGCAGCCCAT+TGG | - | chr5.1:76046822-76046841 | MS.gene63907:CDS | 50.0% | |
| CTGCATTGTTCTGCACCAGT+TGG | - | chr5.1:76046469-76046488 | MS.gene63907:CDS | 50.0% | |
| GAGTGATGAGCTAGAGTGTG+AGG | - | chr5.1:76045432-76045451 | MS.gene63907:intron | 50.0% | |
| GCAACTGGTGCATTTGCAAC+AGG | + | chr5.1:76046547-76046566 | None:intergenic | 50.0% | |
| GGTACTTCGACATGACCAAC+TGG | + | chr5.1:76046487-76046506 | None:intergenic | 50.0% | |
| GGTTGAAGTGTGAGGTTGAC+AGG | - | chr5.1:76045188-76045207 | MS.gene63907:CDS | 50.0% | |
| GTCCATGCATGCAGGCAATT+AGG | - | chr5.1:76046926-76046945 | MS.gene63907:CDS | 50.0% | |
| GTCCTAATTGCCTGCATGCA+TGG | + | chr5.1:76046931-76046950 | None:intergenic | 50.0% | |
| GTTGAAGGAAGATAGGGTGG+AGG | - | chr5.1:76045462-76045481 | MS.gene63907:intron | 50.0% | |
| ! | AAGGAAGATATGGTGGAGGG+TGG | - | chr5.1:76045382-76045401 | MS.gene63907:intron | 50.0% |
| ! | AGGAAGATATGGTGGAGGGT+GGG | - | chr5.1:76045383-76045402 | MS.gene63907:intron | 50.0% |
| ! | GAATGGTGAGTTGGAGTGTG+AGG | - | chr5.1:76045264-76045283 | MS.gene63907:intron | 50.0% |
| ! | GGTGACCCAGGTTCGATTTT+AGG | + | chr5.1:76044740-76044759 | None:intergenic | 50.0% |
| !! | CTCTGGTGGTGGAAACAATG+AGG | - | chr5.1:76045888-76045907 | MS.gene63907:CDS | 50.0% |
| !! | CTGGTGGTGGAAACAATGAG+GGG | - | chr5.1:76045890-76045909 | MS.gene63907:CDS | 50.0% |
| !! | GAAGGTGCTACAATTGGTGC+CGG | + | chr5.1:76046508-76046527 | None:intergenic | 50.0% |
| !! | TGGTGGTGGAAACAATGAGG+GGG | - | chr5.1:76045891-76045910 | MS.gene63907:CDS | 50.0% |
| GCCTGGACCAGCAATCATCT+TGG | + | chr5.1:76046803-76046822 | None:intergenic | 55.0% | |
| GCTAGGTAGGTAGCTTGGCC+TGG | - | chr5.1:76046045-76046064 | MS.gene63907:CDS | 60.0% | |
| GGGCTGCTTGCATCTTTGCC+TGG | + | chr5.1:76046820-76046839 | None:intergenic | 60.0% | |
| TGGTTGGAGGAAGGTGACCC+AGG | + | chr5.1:76044752-76044771 | None:intergenic | 60.0% | |
| ! | GCGGATGATGGCTGTGAGCT+TGG | - | chr5.1:76045562-76045581 | MS.gene63907:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 76044725 | 76046993 | 76044725 | ID=MS.gene63907 |
| chr5.1 | mRNA | 76044725 | 76046993 | 76044725 | ID=MS.gene63907.t1;Parent=MS.gene63907 |
| chr5.1 | exon | 76045724 | 76046993 | 76045724 | ID=MS.gene63907.t1.exon1;Parent=MS.gene63907.t1 |
| chr5.1 | CDS | 76045724 | 76046993 | 76045724 | ID=cds.MS.gene63907.t1;Parent=MS.gene63907.t1 |
| chr5.1 | exon | 76045124 | 76045230 | 76045124 | ID=MS.gene63907.t1.exon2;Parent=MS.gene63907.t1 |
| chr5.1 | CDS | 76045124 | 76045230 | 76045124 | ID=cds.MS.gene63907.t1;Parent=MS.gene63907.t1 |
| chr5.1 | exon | 76044875 | 76045045 | 76044875 | ID=MS.gene63907.t1.exon3;Parent=MS.gene63907.t1 |
| chr5.1 | CDS | 76044875 | 76045045 | 76044875 | ID=cds.MS.gene63907.t1;Parent=MS.gene63907.t1 |
| chr5.1 | exon | 76044725 | 76044778 | 76044725 | ID=MS.gene63907.t1.exon4;Parent=MS.gene63907.t1 |
| chr5.1 | CDS | 76044725 | 76044778 | 76044725 | ID=cds.MS.gene63907.t1;Parent=MS.gene63907.t1 |
| Gene Sequence |
| Protein sequence |
