Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64694.t1 | XP_003612065.1 | 98.6 | 438 | 6 | 0 | 1 | 438 | 1 | 438 | 1.00E-255 | 892.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64694.t1 | Q9FJZ3 | 66.5 | 436 | 138 | 4 | 2 | 436 | 1 | 429 | 1.3e-169 | 597.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64694.t1 | G7KF03 | 98.6 | 438 | 6 | 0 | 1 | 438 | 1 | 438 | 7.4e-256 | 892.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene64694 | 0.811556 | 6.60E-51 | -1.69E-46 |
| MS.gene049233 | MS.gene64694 | 0.800395 | 1.47E-48 | -1.69E-46 |
| MS.gene049260 | MS.gene64694 | 0.81312 | 3.01E-51 | -1.69E-46 |
| MS.gene050680 | MS.gene64694 | 0.806909 | 6.54E-50 | -1.69E-46 |
| MS.gene051265 | MS.gene64694 | 0.806547 | 7.80E-50 | -1.69E-46 |
| MS.gene055356 | MS.gene64694 | 0.840397 | 8.91E-58 | -1.69E-46 |
| MS.gene055358 | MS.gene64694 | 0.852391 | 4.76E-61 | -1.69E-46 |
| MS.gene057469 | MS.gene64694 | 0.835266 | 1.85E-56 | -1.69E-46 |
| MS.gene059128 | MS.gene64694 | 0.831475 | 1.63E-55 | -1.69E-46 |
| MS.gene060137 | MS.gene64694 | -0.820065 | 8.35E-53 | -1.69E-46 |
| MS.gene060802 | MS.gene64694 | 0.809651 | 1.70E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene64694 | MS.gene006591 | PPI |
| MS.gene065919 | MS.gene64694 | PPI |
| MS.gene031718 | MS.gene64694 | PPI |
| MS.gene64694 | MS.gene83173 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64694.t1 | MTR_5g020890 | 98.630 | 438 | 6 | 0 | 1 | 438 | 1 | 438 | 0.0 | 899 |
| MS.gene64694.t1 | MTR_3g112060 | 64.916 | 419 | 136 | 7 | 2 | 418 | 1 | 410 | 0.0 | 548 |
| MS.gene64694.t1 | MTR_1g085430 | 56.642 | 399 | 167 | 3 | 7 | 403 | 9 | 403 | 1.68e-165 | 471 |
| MS.gene64694.t1 | MTR_1g085420 | 57.252 | 393 | 164 | 2 | 11 | 403 | 15 | 403 | 2.52e-163 | 466 |
| MS.gene64694.t1 | MTR_1g085310 | 55.919 | 397 | 169 | 4 | 8 | 404 | 10 | 400 | 6.23e-163 | 465 |
| MS.gene64694.t1 | MTR_4g043760 | 53.924 | 395 | 179 | 3 | 5 | 399 | 9 | 400 | 1.50e-160 | 459 |
| MS.gene64694.t1 | MTR_1g085350 | 54.040 | 396 | 176 | 4 | 8 | 403 | 69 | 458 | 3.91e-155 | 447 |
| MS.gene64694.t1 | MTR_7g111740 | 54.987 | 371 | 162 | 3 | 29 | 399 | 60 | 425 | 7.97e-150 | 432 |
| MS.gene64694.t1 | MTR_7g073620 | 51.958 | 383 | 181 | 2 | 31 | 411 | 11 | 392 | 2.03e-146 | 423 |
| MS.gene64694.t1 | MTR_8g005670 | 52.455 | 387 | 181 | 2 | 24 | 408 | 56 | 441 | 3.89e-146 | 424 |
| MS.gene64694.t1 | MTR_7g073550 | 49.383 | 405 | 196 | 3 | 15 | 411 | 37 | 440 | 7.36e-144 | 418 |
| MS.gene64694.t1 | MTR_7g073550 | 50.914 | 383 | 185 | 2 | 31 | 411 | 58 | 439 | 8.47e-144 | 418 |
| MS.gene64694.t1 | MTR_1g085320 | 51.899 | 395 | 167 | 5 | 11 | 403 | 14 | 387 | 4.22e-143 | 414 |
| MS.gene64694.t1 | MTR_8g005270 | 51.421 | 387 | 185 | 2 | 24 | 408 | 39 | 424 | 1.02e-142 | 415 |
| MS.gene64694.t1 | MTR_8g006550 | 51.421 | 387 | 185 | 2 | 24 | 408 | 59 | 444 | 1.59e-142 | 415 |
| MS.gene64694.t1 | MTR_2g090390 | 46.791 | 374 | 195 | 2 | 30 | 399 | 39 | 412 | 2.76e-127 | 375 |
| MS.gene64694.t1 | MTR_4g078230 | 43.236 | 377 | 211 | 1 | 31 | 404 | 39 | 415 | 7.83e-118 | 351 |
| MS.gene64694.t1 | MTR_0005s0150 | 55.517 | 290 | 127 | 2 | 110 | 399 | 14 | 301 | 2.35e-117 | 345 |
| MS.gene64694.t1 | MTR_7g073320 | 33.333 | 117 | 64 | 1 | 295 | 411 | 17 | 119 | 5.51e-18 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64694.t1 | AT5G66460 | 66.514 | 436 | 138 | 4 | 2 | 436 | 1 | 429 | 0.0 | 594 |
| MS.gene64694.t1 | AT3G10890 | 53.580 | 405 | 184 | 4 | 2 | 403 | 1 | 404 | 3.74e-168 | 479 |
| MS.gene64694.t1 | AT3G10900 | 54.568 | 405 | 177 | 6 | 2 | 402 | 1 | 402 | 2.82e-160 | 458 |
| MS.gene64694.t1 | AT5G01930 | 50.758 | 396 | 189 | 3 | 15 | 405 | 28 | 422 | 1.22e-147 | 428 |
| MS.gene64694.t1 | AT1G02310 | 52.368 | 380 | 169 | 5 | 26 | 399 | 24 | 397 | 2.72e-134 | 392 |
| MS.gene64694.t1 | AT1G02310 | 52.368 | 380 | 169 | 5 | 26 | 399 | 44 | 417 | 5.23e-134 | 392 |
| MS.gene64694.t1 | AT2G20680 | 46.133 | 375 | 200 | 1 | 30 | 402 | 41 | 415 | 7.19e-125 | 369 |
| MS.gene64694.t1 | AT4G28320 | 43.829 | 397 | 218 | 2 | 8 | 399 | 15 | 411 | 1.15e-124 | 369 |
| MS.gene64694.t1 | AT3G30540 | 48.333 | 360 | 140 | 7 | 2 | 355 | 1 | 320 | 9.53e-115 | 340 |
Find 89 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACAATGAACAAATGTTTA+AGG | 0.138199 | 5.2:+12134236 | MS.gene64694:CDS |
| GGCATTCATTTCATGTTAAA+TGG | 0.157356 | 5.2:+12134033 | MS.gene64694:CDS |
| CCAATTCTAGTAGCAGAATT+TGG | 0.190502 | 5.2:+12136532 | MS.gene64694:CDS |
| GGAAAATCATTTAAAGATTC+AGG | 0.202299 | 5.2:+12136553 | MS.gene64694:CDS |
| TTGCATAAATCTTCCGAATA+AGG | 0.205768 | 5.2:-12136783 | None:intergenic |
| TTAAAGCCATTTGCATAATA+AGG | 0.207976 | 5.2:-12134060 | None:intergenic |
| TTTAGGAACCCTGTTGTTAA+AGG | 0.213923 | 5.2:+12134686 | MS.gene64694:CDS |
| CAAATGGCTTTAATGCTTAC+TGG | 0.225498 | 5.2:+12134070 | MS.gene64694:CDS |
| GTGAACAATTATGAGAGTTT+TGG | 0.256433 | 5.2:+12134593 | MS.gene64694:CDS |
| CCAAATTCTGCTACTAGAAT+TGG | 0.275704 | 5.2:-12136532 | None:intergenic |
| CATTGATAGGAATCACTTAT+TGG | 0.286976 | 5.2:+12135876 | MS.gene64694:CDS |
| GTTAATAGTAGGATTGAATT+TGG | 0.289349 | 5.2:-12135944 | None:intergenic |
| GGAAATAGAGGAAGACAAAT+TGG | 0.293388 | 5.2:+12136871 | MS.gene64694:CDS |
| CATCAGATGATGATTTCTTT+AGG | 0.293457 | 5.2:+12134669 | MS.gene64694:CDS |
| TGATATTGAAACACTCTTGA+TGG | 0.294230 | 5.2:-12133972 | None:intergenic |
| CTCATAAACTATACCTTATT+CGG | 0.322951 | 5.2:+12136770 | MS.gene64694:CDS |
| CAGCGAGTGGAGCATTGTTC+TGG | 0.358097 | 5.2:+12136653 | MS.gene64694:CDS |
| ACACTCTTGATGGACCAAAA+TGG | 0.361828 | 5.2:-12133962 | None:intergenic |
| CTTTAGTGAAGTCCATTGAT+AGG | 0.370341 | 5.2:+12135863 | MS.gene64694:CDS |
| GATATATGCGTCTGCGAAAA+GGG | 0.371629 | 5.2:+12136624 | MS.gene64694:CDS |
| GACTTACTGTTGCTAGAACT+TGG | 0.374694 | 5.2:+12134166 | MS.gene64694:CDS |
| TGATCCATCTCAGAGATTCA+AGG | 0.381469 | 5.2:+12134110 | MS.gene64694:CDS |
| AACTGGGCTAGAAGTAATAA+TGG | 0.393024 | 5.2:+12134635 | MS.gene64694:CDS |
| AGCTCCCATGCCATGATTGT+TGG | 0.395030 | 5.2:-12135259 | None:intergenic |
| ATGTAGAAACCTTTAACAAC+AGG | 0.395168 | 5.2:-12134695 | None:intergenic |
| GATGCCTGGGATTCGATTGT+TGG | 0.395930 | 5.2:-12135989 | None:intergenic |
| TTTCTACATCAATCATGTTA+AGG | 0.399179 | 5.2:+12134709 | MS.gene64694:CDS |
| GGAAATCCTTATTATGCAAA+TGG | 0.401450 | 5.2:+12134054 | MS.gene64694:CDS |
| TCCTTCAGGAAGGACTATTC+AGG | 0.416711 | 5.2:+12135309 | MS.gene64694:CDS |
| AGATATATGCGTCTGCGAAA+AGG | 0.430041 | 5.2:+12136623 | MS.gene64694:CDS |
| TTATTGGAAGCTGGACTTGA+AGG | 0.430930 | 5.2:+12135892 | MS.gene64694:CDS |
| AGGTGTACGTCAGATCCTTC+AGG | 0.440657 | 5.2:+12135295 | MS.gene64694:CDS |
| TATTGAAAAGTTGATCTCTC+TGG | 0.448941 | 5.2:-12136588 | None:intergenic |
| GGAAGAAGCAGTATGTGAAC+TGG | 0.448948 | 5.2:+12134618 | MS.gene64694:CDS |
| TGGAAAAGAGCTAGATTTAA+CGG | 0.453928 | 5.2:+12136826 | MS.gene64694:CDS |
| AGTCCTTTGCAATATTCTCC+TGG | 0.460187 | 5.2:+12134210 | MS.gene64694:CDS |
| GGATTGAATTTGGTCCTTTG+AGG | 0.460580 | 5.2:-12135934 | None:intergenic |
| TTCCACAGACTGTTCTCAAC+AGG | 0.466531 | 5.2:+12135200 | MS.gene64694:intron |
| ATAGGGCTGGATCACGGAAA+TGG | 0.471647 | 5.2:+12135837 | MS.gene64694:intron |
| CAATAAGTGATTCCTATCAA+TGG | 0.476985 | 5.2:-12135875 | None:intergenic |
| AATCCTACTATTAACAACAT+AGG | 0.484474 | 5.2:+12135952 | MS.gene64694:CDS |
| ACGGTTGCAAAATCGATGCC+TGG | 0.487815 | 5.2:-12136003 | None:intergenic |
| GTCCCTATGTTGTTAATAGT+AGG | 0.488737 | 5.2:-12135955 | None:intergenic |
| AGAACTTGGGCTTTCAGTGA+TGG | 0.491493 | 5.2:+12134180 | MS.gene64694:CDS |
| CAAAGATGATCCAACAATCA+TGG | 0.501682 | 5.2:+12135249 | MS.gene64694:CDS |
| AGGAATCACTTATTGGAAGC+TGG | 0.504001 | 5.2:+12135883 | MS.gene64694:CDS |
| GAGCTAGATTTAACGGAAGA+AGG | 0.504274 | 5.2:+12136833 | MS.gene64694:CDS |
| TTAGAGCATATTGTGCGTCT+AGG | 0.506071 | 5.2:-12136504 | None:intergenic |
| TTTCGTGAAGCAACAAGTCA+TGG | 0.506451 | 5.2:+12134144 | MS.gene64694:CDS |
| ACTTACTGTTGCTAGAACTT+GGG | 0.508850 | 5.2:+12134167 | MS.gene64694:CDS |
| TTCTGGCAACTTCTTACAGA+AGG | 0.511415 | 5.2:+12136670 | MS.gene64694:CDS |
| ATCCTACTATTAACAACATA+GGG | 0.515967 | 5.2:+12135953 | MS.gene64694:CDS |
| GATGGACCAAAATGGCCAAA+AGG | 0.523403 | 5.2:-12133954 | None:intergenic |
| TCGCGCGTTGGTGGAAATAG+AGG | 0.524094 | 5.2:+12136859 | MS.gene64694:CDS |
| GCAACTTCTTACAGAAGGAA+TGG | 0.529256 | 5.2:+12136675 | MS.gene64694:CDS |
| TATTGGAAGCTGGACTTGAA+GGG | 0.536131 | 5.2:+12135893 | MS.gene64694:CDS |
| AATATCAATGTAGAAGCTGC+TGG | 0.539763 | 5.2:+12133988 | MS.gene64694:CDS |
| CGGTTGCAAAATCGATGCCT+GGG | 0.543074 | 5.2:-12136002 | None:intergenic |
| GAATCTTTCGACGATGGCTA+TGG | 0.544184 | 5.2:+12136697 | MS.gene64694:CDS |
| CAGAACAATGCTCCACTCGC+TGG | 0.548466 | 5.2:-12136652 | None:intergenic |
| ATTGCCAACAATCGAATCCC+AGG | 0.555801 | 5.2:+12135985 | MS.gene64694:CDS |
| TTCATTGTTATCCCGACCAA+TGG | 0.564049 | 5.2:+12136025 | MS.gene64694:CDS |
| ATGATCCAACAATCATGGCA+TGG | 0.566474 | 5.2:+12135254 | MS.gene64694:CDS |
| ATTTGTTCATTGTAGAAACC+AGG | 0.567175 | 5.2:-12134228 | None:intergenic |
| GATGGCTATGGTATATCGCT+TGG | 0.567896 | 5.2:+12136709 | MS.gene64694:CDS |
| GAAACCTTGAATCTCTGAGA+TGG | 0.570233 | 5.2:-12134114 | None:intergenic |
| CGCATATATCTTGTAGTACA+CGG | 0.572125 | 5.2:-12136611 | None:intergenic |
| ATATCTGAGGCTAGAAAGCA+TGG | 0.573786 | 5.2:+12134548 | MS.gene64694:CDS |
| AATTAAGCTGATACTAAGCT+TGG | 0.574063 | 5.2:+12134571 | MS.gene64694:CDS |
| TGATCCAACAATCATGGCAT+GGG | 0.574244 | 5.2:+12135255 | MS.gene64694:CDS |
| AGAAGGTCTTCGCGCGTTGG+TGG | 0.574402 | 5.2:+12136850 | MS.gene64694:CDS |
| GGAAGAAGGTCTTCGCGCGT+TGG | 0.579935 | 5.2:+12136847 | MS.gene64694:CDS |
| ACTTGGGCTTTCAGTGATGG+TGG | 0.586210 | 5.2:+12134183 | MS.gene64694:CDS |
| AAAAGGGGAGGTCCAGCGAG+TGG | 0.590584 | 5.2:+12136640 | MS.gene64694:CDS |
| TTGATTATAGGGCTGGATCA+CGG | 0.597155 | 5.2:+12135831 | MS.gene64694:intron |
| ATGGACAATCAACACCTCAA+AGG | 0.598022 | 5.2:+12135920 | MS.gene64694:CDS |
| AATGTAGAAGCTGCTGGTGA+TGG | 0.601670 | 5.2:+12133994 | MS.gene64694:CDS |
| GAAGAAGCAGTATGTGAACT+GGG | 0.610382 | 5.2:+12134619 | MS.gene64694:CDS |
| ACCTGAATAGTCCTTCCTGA+AGG | 0.619157 | 5.2:-12135310 | None:intergenic |
| ATATATGCGTCTGCGAAAAG+GGG | 0.632807 | 5.2:+12136625 | MS.gene64694:CDS |
| TGTAGAAACCTTTAACAACA+GGG | 0.641407 | 5.2:-12134694 | None:intergenic |
| TATGCGTCTGCGAAAAGGGG+AGG | 0.642345 | 5.2:+12136628 | MS.gene64694:CDS |
| AAACCAGGAGAATATTGCAA+AGG | 0.645714 | 5.2:-12134213 | None:intergenic |
| TTGGTCGGGATAACAATGAA+CGG | 0.658478 | 5.2:-12136022 | None:intergenic |
| GAAGGATCTGACGTACACCT+AGG | 0.660094 | 5.2:-12135292 | None:intergenic |
| GGGAGCTTATGAATGAACCT+AGG | 0.661088 | 5.2:+12135275 | MS.gene64694:CDS |
| GGAATGGAATCTTTCGACGA+TGG | 0.663000 | 5.2:+12136691 | MS.gene64694:CDS |
| AGATCGCTAATGAACGACGA+TGG | 0.665356 | 5.2:+12136806 | MS.gene64694:CDS |
| GTACGTCAGATCCTTCAGGA+AGG | 0.713213 | 5.2:+12135299 | MS.gene64694:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTATATAATATATACG+AGG | + | chr5.2:12135120-12135139 | MS.gene64694:intron | 10.0% |
| !! | ATTGTAAACAAATTAAAAAT+GGG | - | chr5.2:12136116-12136135 | None:intergenic | 10.0% |
| !!! | TTAAAAATTAATTTTGCATT+TGG | - | chr5.2:12135069-12135088 | None:intergenic | 10.0% |
| !! | AAAAAGAAAAAAAGAAAAAG+GGG | - | chr5.2:12135385-12135404 | None:intergenic | 15.0% |
| !! | AATGATTTAACAATTATGAT+AGG | - | chr5.2:12135551-12135570 | None:intergenic | 15.0% |
| !! | CAAAAAGAAAAAAAGAAAAA+GGG | - | chr5.2:12135386-12135405 | None:intergenic | 15.0% |
| !! | CATTGTAAACAAATTAAAAA+TGG | - | chr5.2:12136117-12136136 | None:intergenic | 15.0% |
| !! | GTTCAATTTAATATATCATT+TGG | + | chr5.2:12134462-12134481 | MS.gene64694:intron | 15.0% |
| !! | TAATTGAAGTATAATTTCTT+TGG | - | chr5.2:12135484-12135503 | None:intergenic | 15.0% |
| !! | TCAAAAAGAAAAAAAGAAAA+AGG | - | chr5.2:12135387-12135406 | None:intergenic | 15.0% |
| !! | TGAATATGAAAATTATCATA+TGG | + | chr5.2:12134774-12134793 | MS.gene64694:intron | 15.0% |
| !! | TTAACTCATAAATAAGAATA+AGG | - | chr5.2:12134978-12134997 | None:intergenic | 15.0% |
| !!! | ATTATGAACATTTTTTACAT+AGG | + | chr5.2:12135522-12135541 | MS.gene64694:intron | 15.0% |
| !!! | TATTTTTCATAAACTATTCA+AGG | + | chr5.2:12134264-12134283 | MS.gene64694:intron | 15.0% |
| !!! | TTTTTTTACTAAACAATTCT+TGG | - | chr5.2:12134390-12134409 | None:intergenic | 15.0% |
| !! | ACTGTTTAACATTTGATTAT+AGG | + | chr5.2:12135819-12135838 | MS.gene64694:intron | 20.0% |
| !! | CTGTTTAACATTTGATTATA+GGG | + | chr5.2:12135820-12135839 | MS.gene64694:intron | 20.0% |
| !!! | AAATTAATTTTGCATTTGGA+TGG | - | chr5.2:12135065-12135084 | None:intergenic | 20.0% |
| !!! | ACTATATTTTTAGTTACCAT+TGG | - | chr5.2:12136044-12136063 | None:intergenic | 20.0% |
| !!! | AGCTTTATGTAAAAACTAAA+AGG | - | chr5.2:12134834-12134853 | None:intergenic | 20.0% |
| !!! | ATTTGTTTACAATGCAATTT+TGG | + | chr5.2:12136123-12136142 | MS.gene64694:intron | 20.0% |
| !!! | ATTTTTTTGTCTTAAACTTC+CGG | + | chr5.2:12134424-12134443 | MS.gene64694:intron | 20.0% |
| !!! | TTACATAAAGCTATGTTTTT+AGG | + | chr5.2:12134842-12134861 | MS.gene64694:intron | 20.0% |
| !!! | TTTGATGTAATTTATTTTCC+TGG | + | chr5.2:12135174-12135193 | MS.gene64694:intron | 20.0% |
| !!! | TTTGTTTACAATGCAATTTT+GGG | + | chr5.2:12136124-12136143 | MS.gene64694:intron | 20.0% |
| ! | AATCCTACTATTAACAACAT+AGG | + | chr5.2:12135952-12135971 | MS.gene64694:CDS | 25.0% |
| ! | AGATTAATTGGTTATTGGAT+CGG | - | chr5.2:12135026-12135045 | None:intergenic | 25.0% |
| ! | ATCCTACTATTAACAACATA+GGG | + | chr5.2:12135953-12135972 | MS.gene64694:CDS | 25.0% |
| ! | CCAAATGTACATGATTTAAT+TGG | + | chr5.2:12136355-12136374 | MS.gene64694:intron | 25.0% |
| ! | CCAATTAAATCATGTACATT+TGG | - | chr5.2:12136358-12136377 | None:intergenic | 25.0% |
| ! | CCAGTTTACGATTAAAAAAT+AGG | - | chr5.2:12135654-12135673 | None:intergenic | 25.0% |
| ! | CTACAATGAACAAATGTTTA+AGG | + | chr5.2:12134236-12134255 | MS.gene64694:CDS | 25.0% |
| ! | CTCATAAACTATACCTTATT+CGG | + | chr5.2:12136770-12136789 | MS.gene64694:CDS | 25.0% |
| ! | GGAAAATCATTTAAAGATTC+AGG | + | chr5.2:12136553-12136572 | MS.gene64694:CDS | 25.0% |
| ! | GTTAATAGTAGGATTGAATT+TGG | - | chr5.2:12135947-12135966 | None:intergenic | 25.0% |
| ! | GTTTCTACTACCAATAATAT+TGG | - | chr5.2:12135717-12135736 | None:intergenic | 25.0% |
| ! | TGAAGTCTTACCAATATTAT+TGG | + | chr5.2:12135704-12135723 | MS.gene64694:intron | 25.0% |
| ! | TTAAAGCCATTTGCATAATA+AGG | - | chr5.2:12134063-12134082 | None:intergenic | 25.0% |
| ! | TTTCTACATCAATCATGTTA+AGG | + | chr5.2:12134709-12134728 | MS.gene64694:CDS | 25.0% |
| !! | GAAACTTTTGCAATATGATT+TGG | + | chr5.2:12135732-12135751 | MS.gene64694:intron | 25.0% |
| !! | TTGTATCTGATTTTCTATGT+TGG | + | chr5.2:12134499-12134518 | MS.gene64694:intron | 25.0% |
| !!! | CCTATTTTTTAATCGTAAAC+TGG | + | chr5.2:12135651-12135670 | MS.gene64694:intron | 25.0% |
| !!! | TATTTTTAGTTACCATTGGT+CGG | - | chr5.2:12136040-12136059 | None:intergenic | 25.0% |
| !!! | TTTTGCTTTGTTTTTCCTTT+TGG | + | chr5.2:12133939-12133958 | MS.gene64694:CDS | 25.0% |
| AAGAAAAAAAGAAAAAGGGG+TGG | - | chr5.2:12135382-12135401 | None:intergenic | 30.0% | |
| AAGTGAATTTGACAGAATCA+TGG | - | chr5.2:12136330-12136349 | None:intergenic | 30.0% | |
| AATTAAGCTGATACTAAGCT+TGG | + | chr5.2:12134571-12134590 | MS.gene64694:CDS | 30.0% | |
| ATGTAGAAACCTTTAACAAC+AGG | - | chr5.2:12134698-12134717 | None:intergenic | 30.0% | |
| ATTTGTTCATTGTAGAAACC+AGG | - | chr5.2:12134231-12134250 | None:intergenic | 30.0% | |
| CAATAACCAATTAATCTCAG+AGG | + | chr5.2:12135029-12135048 | MS.gene64694:intron | 30.0% | |
| CAATAAGTGATTCCTATCAA+TGG | - | chr5.2:12135878-12135897 | None:intergenic | 30.0% | |
| CATCAGATGATGATTTCTTT+AGG | + | chr5.2:12134669-12134688 | MS.gene64694:CDS | 30.0% | |
| CATTGATAGGAATCACTTAT+TGG | + | chr5.2:12135876-12135895 | MS.gene64694:CDS | 30.0% | |
| GGAAATCCTTATTATGCAAA+TGG | + | chr5.2:12134054-12134073 | MS.gene64694:CDS | 30.0% | |
| GGCATTCATTTCATGTTAAA+TGG | + | chr5.2:12134033-12134052 | MS.gene64694:CDS | 30.0% | |
| TAAATTGAACAATTTCCGCA+GGG | - | chr5.2:12134452-12134471 | None:intergenic | 30.0% | |
| TAATCCAAAGTTAGATTACG+AGG | + | chr5.2:12134350-12134369 | MS.gene64694:intron | 30.0% | |
| TAATCTAACTTTGGATTACG+AGG | - | chr5.2:12134348-12134367 | None:intergenic | 30.0% | |
| TGATATTGAAACACTCTTGA+TGG | - | chr5.2:12133975-12133994 | None:intergenic | 30.0% | |
| TGGAAAAGAGCTAGATTTAA+CGG | + | chr5.2:12136826-12136845 | MS.gene64694:CDS | 30.0% | |
| TGTAGAAACCTTTAACAACA+GGG | - | chr5.2:12134697-12134716 | None:intergenic | 30.0% | |
| TTAAATTGAACAATTTCCGC+AGG | - | chr5.2:12134453-12134472 | None:intergenic | 30.0% | |
| TTAACATTTGATTATAGGGC+TGG | + | chr5.2:12135824-12135843 | MS.gene64694:intron | 30.0% | |
| TTGCATAAATCTTCCGAATA+AGG | - | chr5.2:12136786-12136805 | None:intergenic | 30.0% | |
| TTTACCTCGTAATCTAACTT+TGG | - | chr5.2:12134357-12134376 | None:intergenic | 30.0% | |
| TTTCTTTGATTGCACAAACA+GGG | + | chr5.2:12136420-12136439 | MS.gene64694:intron | 30.0% | |
| ! | ATCTGATTTTCTATGTTGGT+TGG | + | chr5.2:12134503-12134522 | MS.gene64694:intron | 30.0% |
| ! | GTGAACAATTATGAGAGTTT+TGG | + | chr5.2:12134593-12134612 | MS.gene64694:CDS | 30.0% |
| ! | TAATTTTGCATTTGGATGGT+GGG | - | chr5.2:12135061-12135080 | None:intergenic | 30.0% |
| ! | TATTGAAAAGTTGATCTCTC+TGG | - | chr5.2:12136591-12136610 | None:intergenic | 30.0% |
| ! | TTAATTTTGCATTTGGATGG+TGG | - | chr5.2:12135062-12135081 | None:intergenic | 30.0% |
| ! | TTTTCTTTGATTGCACAAAC+AGG | + | chr5.2:12136419-12136438 | MS.gene64694:intron | 30.0% |
| !! | AACAATTATGAGAGTTTTGG+AGG | + | chr5.2:12134596-12134615 | MS.gene64694:CDS | 30.0% |
| !! | ATTAGACCTCTGAGATTAAT+TGG | - | chr5.2:12135038-12135057 | None:intergenic | 30.0% |
| !! | CTCTGAGATTAATTGGTTAT+TGG | - | chr5.2:12135031-12135050 | None:intergenic | 30.0% |
| !! | GTTGGATTTTGTTATATCTG+AGG | + | chr5.2:12134535-12134554 | MS.gene64694:CDS | 30.0% |
| !!! | ACAATTATGAGAGTTTTGGA+GGG | + | chr5.2:12134597-12134616 | MS.gene64694:CDS | 30.0% |
| !!! | AGGAGTATAGTTTTGTTGTT+AGG | + | chr5.2:12135140-12135159 | MS.gene64694:intron | 30.0% |
| !!! | ATTTTTAGTTACCATTGGTC+GGG | - | chr5.2:12136039-12136058 | None:intergenic | 30.0% |
| AAACCAGGAGAATATTGCAA+AGG | - | chr5.2:12134216-12134235 | None:intergenic | 35.0% | |
| AATATCAATGTAGAAGCTGC+TGG | + | chr5.2:12133988-12134007 | MS.gene64694:CDS | 35.0% | |
| ACAGTCAATGAGAGGAATAA+AGG | - | chr5.2:12135422-12135441 | None:intergenic | 35.0% | |
| ACTTACTGTTGCTAGAACTT+GGG | + | chr5.2:12134167-12134186 | MS.gene64694:CDS | 35.0% | |
| CAAAGATGATCCAACAATCA+TGG | + | chr5.2:12135249-12135268 | MS.gene64694:CDS | 35.0% | |
| CCAAATTCTGCTACTAGAAT+TGG | - | chr5.2:12136535-12136554 | None:intergenic | 35.0% | |
| CCAATTCTAGTAGCAGAATT+TGG | + | chr5.2:12136532-12136551 | MS.gene64694:CDS | 35.0% | |
| CGCATATATCTTGTAGTACA+CGG | - | chr5.2:12136614-12136633 | None:intergenic | 35.0% | |
| CTTTAGTGAAGTCCATTGAT+AGG | + | chr5.2:12135863-12135882 | MS.gene64694:CDS | 35.0% | |
| GGAAATAGAGGAAGACAAAT+TGG | + | chr5.2:12136871-12136890 | MS.gene64694:CDS | 35.0% | |
| GTCCCTATGTTGTTAATAGT+AGG | - | chr5.2:12135958-12135977 | None:intergenic | 35.0% | |
| TATAGCATGTCCTTGAAATC+AGG | - | chr5.2:12135779-12135798 | None:intergenic | 35.0% | |
| TCTTAACCATCCTTGAGAAA+GGG | + | chr5.2:12134321-12134340 | MS.gene64694:intron | 35.0% | |
| TGGACAAGTTTCACAAATCA+CGG | + | chr5.2:12135752-12135771 | MS.gene64694:intron | 35.0% | |
| TTTAGGAACCCTGTTGTTAA+AGG | + | chr5.2:12134686-12134705 | MS.gene64694:CDS | 35.0% | |
| ! | AAATGGGAGTTCTCGAATTT+TGG | - | chr5.2:12136100-12136119 | None:intergenic | 35.0% |
| ! | AACAGGTACAACAGTTTTAC+TGG | + | chr5.2:12135217-12135236 | MS.gene64694:CDS | 35.0% |
| ! | AACTGGGCTAGAAGTAATAA+TGG | + | chr5.2:12134635-12134654 | MS.gene64694:CDS | 35.0% |
| ! | AATGGGAGTTCTCGAATTTT+GGG | - | chr5.2:12136099-12136118 | None:intergenic | 35.0% |
| ! | AGCTTGCATTTTTGAACAAC+TGG | + | chr5.2:12136467-12136486 | MS.gene64694:CDS | 35.0% |
| ! | GAACTTCTTTTGTCTTTGCT+TGG | + | chr5.2:12134744-12134763 | MS.gene64694:intron | 35.0% |
| ! | GTTTTTCCTTTTGGCCATTT+TGG | + | chr5.2:12133948-12133967 | MS.gene64694:CDS | 35.0% |
| !! | CAAATGGCTTTAATGCTTAC+TGG | + | chr5.2:12134070-12134089 | MS.gene64694:CDS | 35.0% |
| !! | TCTATGTTGGTTGGTTTGAA+GGG | + | chr5.2:12134512-12134531 | MS.gene64694:intron | 35.0% |
| !! | TTCTATGTTGGTTGGTTTGA+AGG | + | chr5.2:12134511-12134530 | MS.gene64694:intron | 35.0% |
| AGATATATGCGTCTGCGAAA+AGG | + | chr5.2:12136623-12136642 | MS.gene64694:CDS | 40.0% | |
| AGGAATCACTTATTGGAAGC+TGG | + | chr5.2:12135883-12135902 | MS.gene64694:CDS | 40.0% | |
| AGTCCTTTGCAATATTCTCC+TGG | + | chr5.2:12134210-12134229 | MS.gene64694:CDS | 40.0% | |
| ATATATGCGTCTGCGAAAAG+GGG | + | chr5.2:12136625-12136644 | MS.gene64694:CDS | 40.0% | |
| ATGATCCAACAATCATGGCA+TGG | + | chr5.2:12135254-12135273 | MS.gene64694:CDS | 40.0% | |
| ATGGACAATCAACACCTCAA+AGG | + | chr5.2:12135920-12135939 | MS.gene64694:CDS | 40.0% | |
| CATCTATCACAGTCAATGAG+AGG | - | chr5.2:12135430-12135449 | None:intergenic | 40.0% | |
| GAAGAAGCAGTATGTGAACT+GGG | + | chr5.2:12134619-12134638 | MS.gene64694:CDS | 40.0% | |
| GACTTACTGTTGCTAGAACT+TGG | + | chr5.2:12134166-12134185 | MS.gene64694:CDS | 40.0% | |
| GAGCTAGATTTAACGGAAGA+AGG | + | chr5.2:12136833-12136852 | MS.gene64694:CDS | 40.0% | |
| GATATATGCGTCTGCGAAAA+GGG | + | chr5.2:12136624-12136643 | MS.gene64694:CDS | 40.0% | |
| GCAACTTCTTACAGAAGGAA+TGG | + | chr5.2:12136675-12136694 | MS.gene64694:CDS | 40.0% | |
| GGACAAGTTTCACAAATCAC+GGG | + | chr5.2:12135753-12135772 | MS.gene64694:intron | 40.0% | |
| GGATTGAATTTGGTCCTTTG+AGG | - | chr5.2:12135937-12135956 | None:intergenic | 40.0% | |
| GTCTTAACCATCCTTGAGAA+AGG | + | chr5.2:12134320-12134339 | MS.gene64694:intron | 40.0% | |
| TATTGGAAGCTGGACTTGAA+GGG | + | chr5.2:12135893-12135912 | MS.gene64694:CDS | 40.0% | |
| TGATCCAACAATCATGGCAT+GGG | + | chr5.2:12135255-12135274 | MS.gene64694:CDS | 40.0% | |
| TGATCCATCTCAGAGATTCA+AGG | + | chr5.2:12134110-12134129 | MS.gene64694:CDS | 40.0% | |
| TTAGAGCATATTGTGCGTCT+AGG | - | chr5.2:12136507-12136526 | None:intergenic | 40.0% | |
| TTATTGGAAGCTGGACTTGA+AGG | + | chr5.2:12135892-12135911 | MS.gene64694:CDS | 40.0% | |
| TTCATTGTTATCCCGACCAA+TGG | + | chr5.2:12136025-12136044 | MS.gene64694:CDS | 40.0% | |
| TTCTGGCAACTTCTTACAGA+AGG | + | chr5.2:12136670-12136689 | MS.gene64694:CDS | 40.0% | |
| TTGATTATAGGGCTGGATCA+CGG | + | chr5.2:12135831-12135850 | MS.gene64694:intron | 40.0% | |
| TTGGTCGGGATAACAATGAA+CGG | - | chr5.2:12136025-12136044 | None:intergenic | 40.0% | |
| TTTCGTGAAGCAACAAGTCA+TGG | + | chr5.2:12134144-12134163 | MS.gene64694:CDS | 40.0% | |
| ! | ACACTCTTGATGGACCAAAA+TGG | - | chr5.2:12133965-12133984 | None:intergenic | 40.0% |
| ! | ATATCTGAGGCTAGAAAGCA+TGG | + | chr5.2:12134548-12134567 | MS.gene64694:CDS | 40.0% |
| ! | GAAACCTTGAATCTCTGAGA+TGG | - | chr5.2:12134117-12134136 | None:intergenic | 40.0% |
| ! | TGAGAGGAATAAAGGTGTAG+TGG | - | chr5.2:12135414-12135433 | None:intergenic | 40.0% |
| !! | CTATGTTGGTTGGTTTGAAG+GGG | + | chr5.2:12134513-12134532 | MS.gene64694:intron | 40.0% |
| !!! | GATGGTTTTGTGAGAACAAG+AGG | + | chr5.2:12134012-12134031 | MS.gene64694:CDS | 40.0% |
| AAACAGTCAGACTCAGCTCA+TGG | - | chr5.2:12135806-12135825 | None:intergenic | 45.0% | |
| AAATCACGGGCCTGATTTCA+AGG | + | chr5.2:12135766-12135785 | MS.gene64694:intron | 45.0% | |
| AATGTAGAAGCTGCTGGTGA+TGG | + | chr5.2:12133994-12134013 | MS.gene64694:CDS | 45.0% | |
| ACCTGAATAGTCCTTCCTGA+AGG | - | chr5.2:12135313-12135332 | None:intergenic | 45.0% | |
| AGAACTTGGGCTTTCAGTGA+TGG | + | chr5.2:12134180-12134199 | MS.gene64694:CDS | 45.0% | |
| AGATCGCTAATGAACGACGA+TGG | + | chr5.2:12136806-12136825 | MS.gene64694:CDS | 45.0% | |
| ATTACGAGGACCCTTTCTCA+AGG | - | chr5.2:12134334-12134353 | None:intergenic | 45.0% | |
| ATTGCCAACAATCGAATCCC+AGG | + | chr5.2:12135985-12136004 | MS.gene64694:CDS | 45.0% | |
| GAATCTTTCGACGATGGCTA+TGG | + | chr5.2:12136697-12136716 | MS.gene64694:CDS | 45.0% | |
| GACAGAATCATGGTGAGCTA+TGG | - | chr5.2:12136320-12136339 | None:intergenic | 45.0% | |
| GATGGACCAAAATGGCCAAA+AGG | - | chr5.2:12133957-12133976 | None:intergenic | 45.0% | |
| GATGGCTATGGTATATCGCT+TGG | + | chr5.2:12136709-12136728 | MS.gene64694:CDS | 45.0% | |
| GGAAGAAGCAGTATGTGAAC+TGG | + | chr5.2:12134618-12134637 | MS.gene64694:CDS | 45.0% | |
| GGAATGGAATCTTTCGACGA+TGG | + | chr5.2:12136691-12136710 | MS.gene64694:CDS | 45.0% | |
| GGGAGCTTATGAATGAACCT+AGG | + | chr5.2:12135275-12135294 | MS.gene64694:CDS | 45.0% | |
| TACCTGTTGAGAACAGTCTG+TGG | - | chr5.2:12135205-12135224 | None:intergenic | 45.0% | |
| TCCTTCAGGAAGGACTATTC+AGG | + | chr5.2:12135309-12135328 | MS.gene64694:CDS | 45.0% | |
| TTCCACAGACTGTTCTCAAC+AGG | + | chr5.2:12135200-12135219 | MS.gene64694:intron | 45.0% | |
| ! | GCTGGACTTGAAGGGTTTTA+TGG | + | chr5.2:12135901-12135920 | MS.gene64694:CDS | 45.0% |
| ACGGTTGCAAAATCGATGCC+TGG | - | chr5.2:12136006-12136025 | None:intergenic | 50.0% | |
| ACTTGGGCTTTCAGTGATGG+TGG | + | chr5.2:12134183-12134202 | MS.gene64694:CDS | 50.0% | |
| AGCTCCCATGCCATGATTGT+TGG | - | chr5.2:12135262-12135281 | None:intergenic | 50.0% | |
| AGGTGTACGTCAGATCCTTC+AGG | + | chr5.2:12135295-12135314 | MS.gene64694:CDS | 50.0% | |
| ATAGGGCTGGATCACGGAAA+TGG | + | chr5.2:12135837-12135856 | MS.gene64694:intron | 50.0% | |
| CGGTTGCAAAATCGATGCCT+GGG | - | chr5.2:12136005-12136024 | None:intergenic | 50.0% | |
| CTTAAACTTCCGGTTCCCTG+CGG | + | chr5.2:12134434-12134453 | MS.gene64694:intron | 50.0% | |
| GAACAATTTCCGCAGGGAAC+CGG | - | chr5.2:12134446-12134465 | None:intergenic | 50.0% | |
| GAACAGTCTGTGGAAGATCC+AGG | - | chr5.2:12135195-12135214 | None:intergenic | 50.0% | |
| GAAGGATCTGACGTACACCT+AGG | - | chr5.2:12135295-12135314 | None:intergenic | 50.0% | |
| GATGCCTGGGATTCGATTGT+TGG | - | chr5.2:12135992-12136011 | None:intergenic | 50.0% | |
| GTACGTCAGATCCTTCAGGA+AGG | + | chr5.2:12135299-12135318 | MS.gene64694:CDS | 50.0% | |
| !! | GTTGGTTGGTTTGAAGGGGT+TGG | + | chr5.2:12134517-12134536 | MS.gene64694:intron | 50.0% |
| CAGAACAATGCTCCACTCGC+TGG | - | chr5.2:12136655-12136674 | None:intergenic | 55.0% | |
| CGAGGACCCTTTCTCAAGGA+TGG | - | chr5.2:12134330-12134349 | None:intergenic | 55.0% | |
| TATGCGTCTGCGAAAAGGGG+AGG | + | chr5.2:12136628-12136647 | MS.gene64694:CDS | 55.0% | |
| ! | TCGCGCGTTGGTGGAAATAG+AGG | + | chr5.2:12136859-12136878 | MS.gene64694:CDS | 55.0% |
| !! | CAGCGAGTGGAGCATTGTTC+TGG | + | chr5.2:12136653-12136672 | MS.gene64694:CDS | 55.0% |
| AAAAGGGGAGGTCCAGCGAG+TGG | + | chr5.2:12136640-12136659 | MS.gene64694:CDS | 60.0% | |
| AGAAGGTCTTCGCGCGTTGG+TGG | + | chr5.2:12136850-12136869 | MS.gene64694:CDS | 60.0% | |
| GGAAGAAGGTCTTCGCGCGT+TGG | + | chr5.2:12136847-12136866 | MS.gene64694:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 12133928 | 12136900 | 12133928 | ID=MS.gene64694 |
| chr5.2 | mRNA | 12133928 | 12136900 | 12133928 | ID=MS.gene64694.t1;Parent=MS.gene64694 |
| chr5.2 | exon | 12133928 | 12134257 | 12133928 | ID=MS.gene64694.t1.exon1;Parent=MS.gene64694.t1 |
| chr5.2 | CDS | 12133928 | 12134257 | 12133928 | ID=cds.MS.gene64694.t1;Parent=MS.gene64694.t1 |
| chr5.2 | exon | 12134533 | 12134730 | 12134533 | ID=MS.gene64694.t1.exon2;Parent=MS.gene64694.t1 |
| chr5.2 | CDS | 12134533 | 12134730 | 12134533 | ID=cds.MS.gene64694.t1;Parent=MS.gene64694.t1 |
| chr5.2 | exon | 12135208 | 12135330 | 12135208 | ID=MS.gene64694.t1.exon3;Parent=MS.gene64694.t1 |
| chr5.2 | CDS | 12135208 | 12135330 | 12135208 | ID=cds.MS.gene64694.t1;Parent=MS.gene64694.t1 |
| chr5.2 | exon | 12135841 | 12136046 | 12135841 | ID=MS.gene64694.t1.exon4;Parent=MS.gene64694.t1 |
| chr5.2 | CDS | 12135841 | 12136046 | 12135841 | ID=cds.MS.gene64694.t1;Parent=MS.gene64694.t1 |
| chr5.2 | exon | 12136441 | 12136900 | 12136441 | ID=MS.gene64694.t1.exon5;Parent=MS.gene64694.t1 |
| chr5.2 | CDS | 12136441 | 12136900 | 12136441 | ID=cds.MS.gene64694.t1;Parent=MS.gene64694.t1 |
| Gene Sequence |
| Protein sequence |
