Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049233.t1 | XP_003602691.1 | 87.9 | 735 | 75 | 2 | 1 | 730 | 1 | 726 | 1.70E-263 | 918.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049233.t1 | Q8LLE5 | 55.9 | 295 | 129 | 1 | 82 | 376 | 1 | 294 | 1.8e-75 | 285.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049233.t1 | G7J2M7 | 87.9 | 735 | 75 | 2 | 1 | 730 | 1 | 726 | 1.2e-263 | 918.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene049233 | 0.820868 | 5.46E-53 | -1.69E-46 |
| MS.gene049153 | MS.gene049233 | 0.821273 | 4.41E-53 | -1.69E-46 |
| MS.gene049233 | MS.gene050558 | 0.812771 | 3.59E-51 | -1.69E-46 |
| MS.gene049233 | MS.gene051860 | 0.813355 | 2.67E-51 | -1.69E-46 |
| MS.gene049233 | MS.gene053836 | 0.806971 | 6.35E-50 | -1.69E-46 |
| MS.gene049233 | MS.gene054930 | 0.802466 | 5.54E-49 | -1.69E-46 |
| MS.gene049233 | MS.gene055358 | 0.806747 | 7.08E-50 | -1.69E-46 |
| MS.gene049233 | MS.gene057469 | 0.841737 | 3.96E-58 | -1.69E-46 |
| MS.gene049233 | MS.gene059128 | 0.835109 | 2.03E-56 | -1.69E-46 |
| MS.gene049233 | MS.gene061806 | 0.802885 | 4.54E-49 | -1.69E-46 |
| MS.gene049233 | MS.gene06347 | 0.894355 | 2.67E-75 | -1.69E-46 |
| MS.gene049233 | MS.gene066206 | 0.811787 | 5.88E-51 | -1.69E-46 |
| MS.gene049233 | MS.gene066433 | 0.816884 | 4.39E-52 | -1.69E-46 |
| MS.gene049233 | MS.gene066941 | 0.800536 | 1.38E-48 | -1.69E-46 |
| MS.gene049233 | MS.gene068950 | 0.818733 | 1.68E-52 | -1.69E-46 |
| MS.gene049233 | MS.gene069681 | 0.80302 | 4.25E-49 | -1.69E-46 |
| MS.gene049233 | MS.gene070695 | 0.812275 | 4.60E-51 | -1.69E-46 |
| MS.gene049233 | MS.gene07115 | 0.812787 | 3.56E-51 | -1.69E-46 |
| MS.gene049233 | MS.gene073696 | 0.802351 | 5.85E-49 | -1.69E-46 |
| MS.gene049233 | MS.gene09136 | 0.809628 | 1.72E-50 | -1.69E-46 |
| MS.gene049233 | MS.gene23009 | 0.819849 | 9.36E-53 | -1.69E-46 |
| MS.gene049233 | MS.gene26073 | 0.832972 | 6.97E-56 | -1.69E-46 |
| MS.gene049233 | MS.gene27393 | 0.817329 | 3.49E-52 | -1.69E-46 |
| MS.gene049233 | MS.gene28510 | 0.822247 | 2.62E-53 | -1.69E-46 |
| MS.gene049233 | MS.gene29986 | 0.804685 | 1.92E-49 | -1.69E-46 |
| MS.gene049233 | MS.gene30964 | 0.803968 | 2.71E-49 | -1.69E-46 |
| MS.gene049233 | MS.gene31609 | 0.833943 | 3.99E-56 | -1.69E-46 |
| MS.gene049233 | MS.gene37213 | 0.800923 | 1.15E-48 | -1.69E-46 |
| MS.gene049233 | MS.gene39336 | 0.81763 | 2.98E-52 | -1.69E-46 |
| MS.gene049233 | MS.gene40942 | 0.856734 | 2.63E-62 | -1.69E-46 |
| MS.gene049233 | MS.gene44461 | 0.805681 | 1.19E-49 | -1.69E-46 |
| MS.gene049233 | MS.gene44649 | 0.802325 | 5.92E-49 | -1.69E-46 |
| MS.gene049233 | MS.gene45434 | 0.819448 | 1.16E-52 | -1.69E-46 |
| MS.gene049233 | MS.gene45498 | 0.805497 | 1.30E-49 | -1.69E-46 |
| MS.gene049233 | MS.gene48577 | 0.832329 | 1.01E-55 | -1.69E-46 |
| MS.gene049233 | MS.gene49304 | 0.807331 | 5.33E-50 | -1.69E-46 |
| MS.gene049233 | MS.gene50621 | 0.814878 | 1.23E-51 | -1.69E-46 |
| MS.gene049233 | MS.gene52512 | 0.800559 | 1.36E-48 | -1.69E-46 |
| MS.gene049233 | MS.gene53001 | 0.807088 | 6.00E-50 | -1.69E-46 |
| MS.gene049233 | MS.gene56053 | 0.828474 | 8.81E-55 | -1.69E-46 |
| MS.gene049233 | MS.gene57321 | 0.807782 | 4.27E-50 | -1.69E-46 |
| MS.gene049233 | MS.gene57565 | 0.816318 | 5.88E-52 | -1.69E-46 |
| MS.gene049233 | MS.gene57566 | 0.82013 | 8.07E-53 | -1.69E-46 |
| MS.gene049233 | MS.gene57643 | 0.804129 | 2.50E-49 | -1.69E-46 |
| MS.gene049233 | MS.gene59149 | 0.807935 | 3.96E-50 | -1.69E-46 |
| MS.gene049233 | MS.gene60204 | 0.808274 | 3.36E-50 | -1.69E-46 |
| MS.gene049233 | MS.gene61139 | 0.807304 | 5.40E-50 | -1.69E-46 |
| MS.gene049233 | MS.gene63507 | 0.814121 | 1.81E-51 | -1.69E-46 |
| MS.gene049233 | MS.gene64621 | 0.805212 | 1.49E-49 | -1.69E-46 |
| MS.gene049233 | MS.gene64694 | 0.800395 | 1.47E-48 | -1.69E-46 |
| MS.gene049233 | MS.gene68764 | 0.818252 | 2.16E-52 | -1.69E-46 |
| MS.gene049233 | MS.gene69001 | 0.813835 | 2.09E-51 | -1.69E-46 |
| MS.gene049233 | MS.gene69794 | 0.818094 | 2.35E-52 | -1.69E-46 |
| MS.gene049233 | MS.gene71456 | 0.820536 | 6.51E-53 | -1.69E-46 |
| MS.gene049233 | MS.gene74599 | 0.812928 | 3.31E-51 | -1.69E-46 |
| MS.gene049233 | MS.gene75304 | 0.810796 | 9.65E-51 | -1.69E-46 |
| MS.gene049233 | MS.gene76554 | 0.828414 | 9.11E-55 | -1.69E-46 |
| MS.gene049233 | MS.gene79217 | 0.807024 | 6.19E-50 | -1.69E-46 |
| MS.gene049233 | MS.gene84523 | 0.816929 | 4.29E-52 | -1.69E-46 |
| MS.gene049233 | MS.gene85898 | 0.800798 | 1.22E-48 | -1.69E-46 |
| MS.gene049233 | MS.gene86055 | 0.804205 | 2.42E-49 | -1.69E-46 |
| MS.gene049233 | MS.gene87170 | 0.800459 | 1.43E-48 | -1.69E-46 |
| MS.gene049233 | MS.gene87264 | 0.802221 | 6.22E-49 | -1.69E-46 |
| MS.gene049233 | MS.gene89630 | 0.808137 | 3.59E-50 | -1.69E-46 |
| MS.gene049233 | MS.gene91645 | 0.843172 | 1.65E-58 | -1.69E-46 |
| MS.gene049233 | MS.gene91807 | 0.802076 | 6.66E-49 | -1.69E-46 |
| MS.gene049233 | MS.gene93887 | 0.801688 | 8.00E-49 | -1.69E-46 |
| MS.gene049233 | MS.gene93890 | 0.81675 | 4.71E-52 | -1.69E-46 |
| MS.gene049233 | MS.gene95377 | 0.801274 | 9.73E-49 | -1.69E-46 |
| MS.gene049233 | MS.gene97224 | 0.801535 | 8.60E-49 | -1.69E-46 |
| MS.gene049233 | MS.gene99735 | 0.816547 | 5.23E-52 | -1.69E-46 |
| MS.gene049233 | MS.gene99802 | 0.818348 | 2.05E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047901 | MS.gene049233 | PPI |
| MS.gene047904 | MS.gene049233 | PPI |
| MS.gene049233 | MS.gene002865 | PPI |
| MS.gene049233 | MS.gene01827 | PPI |
| MS.gene63019 | MS.gene049233 | PPI |
| MS.gene049233 | MS.gene99533 | PPI |
| MS.gene01826 | MS.gene049233 | PPI |
| MS.gene002176 | MS.gene049233 | PPI |
| MS.gene002867 | MS.gene049233 | PPI |
| MS.gene002174 | MS.gene049233 | PPI |
| MS.gene049233 | MS.gene84485 | PPI |
| MS.gene049233 | MS.gene00895 | PPI |
| MS.gene049233 | MS.gene01143 | PPI |
| MS.gene071947 | MS.gene049233 | PPI |
| MS.gene026126 | MS.gene049233 | PPI |
| MS.gene049233 | MS.gene026637 | PPI |
| MS.gene01838 | MS.gene049233 | PPI |
| MS.gene049233 | MS.gene93193 | PPI |
| MS.gene049233 | MS.gene047900 | PPI |
| MS.gene049233 | MS.gene002864 | PPI |
| MS.gene049233 | MS.gene00896 | PPI |
| MS.gene049233 | MS.gene75229 | PPI |
| MS.gene01146 | MS.gene049233 | PPI |
| MS.gene33602 | MS.gene049233 | PPI |
| MS.gene071949 | MS.gene049233 | PPI |
| MS.gene049233 | MS.gene047083 | PPI |
| MS.gene00893 | MS.gene049233 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049233.t1 | MTR_3g096990 | 89.932 | 735 | 60 | 2 | 1 | 730 | 1 | 726 | 0.0 | 1291 |
| MS.gene049233.t1 | MTR_3g096990 | 89.662 | 503 | 43 | 1 | 1 | 503 | 1 | 494 | 0.0 | 880 |
| MS.gene049233.t1 | MTR_3g096990 | 82.625 | 259 | 37 | 2 | 477 | 730 | 377 | 632 | 2.15e-135 | 413 |
| MS.gene049233.t1 | MTR_8g094760 | 62.380 | 521 | 152 | 6 | 1 | 501 | 1 | 497 | 0.0 | 559 |
| MS.gene049233.t1 | MTR_8g094760 | 55.253 | 257 | 108 | 4 | 474 | 727 | 379 | 631 | 1.00e-70 | 243 |
| MS.gene049233.t1 | MTR_8g094760 | 62.940 | 483 | 137 | 4 | 39 | 501 | 25 | 485 | 0.0 | 538 |
| MS.gene049233.t1 | MTR_8g094760 | 55.253 | 257 | 108 | 4 | 474 | 727 | 367 | 619 | 7.38e-71 | 243 |
| MS.gene049233.t1 | MTR_1g030010 | 42.167 | 683 | 326 | 16 | 68 | 725 | 147 | 785 | 1.50e-123 | 389 |
| MS.gene049233.t1 | MTR_3g113290 | 42.035 | 226 | 108 | 3 | 64 | 266 | 93 | 318 | 8.31e-37 | 149 |
| MS.gene049233.t1 | MTR_1g024095 | 32.181 | 376 | 197 | 9 | 1 | 338 | 1 | 356 | 1.49e-33 | 138 |
| MS.gene049233.t1 | MTR_1g024095 | 32.181 | 376 | 197 | 9 | 1 | 338 | 1 | 356 | 1.81e-33 | 138 |
| MS.gene049233.t1 | MTR_5g021810 | 33.223 | 301 | 168 | 5 | 1 | 268 | 1 | 301 | 2.55e-30 | 128 |
| MS.gene049233.t1 | MTR_5g021810 | 32.781 | 302 | 169 | 5 | 1 | 268 | 1 | 302 | 9.04e-30 | 126 |
| MS.gene049233.t1 | MTR_4g094848 | 33.916 | 286 | 130 | 6 | 1 | 258 | 1 | 255 | 1.57e-28 | 123 |
| MS.gene049233.t1 | MTR_5g016830 | 28.467 | 411 | 215 | 13 | 1 | 389 | 1 | 354 | 7.74e-23 | 104 |
| MS.gene049233.t1 | MTR_4g085570 | 28.571 | 280 | 149 | 9 | 1 | 266 | 1 | 243 | 8.29e-12 | 69.3 |
| MS.gene049233.t1 | MTR_4g085570 | 28.571 | 280 | 149 | 9 | 1 | 266 | 1 | 243 | 9.58e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049233.t1 | AT3G05270 | 42.006 | 688 | 312 | 14 | 1 | 674 | 1 | 615 | 5.14e-131 | 402 |
| MS.gene049233.t1 | AT3G05270 | 42.006 | 688 | 312 | 14 | 1 | 674 | 1 | 615 | 5.14e-131 | 402 |
| MS.gene049233.t1 | AT3G05270 | 42.006 | 688 | 312 | 14 | 1 | 674 | 1 | 615 | 5.14e-131 | 402 |
| MS.gene049233.t1 | AT1G21810 | 36.901 | 626 | 265 | 23 | 79 | 674 | 13 | 538 | 3.67e-73 | 249 |
| MS.gene049233.t1 | AT1G21810 | 36.901 | 626 | 265 | 23 | 79 | 674 | 13 | 538 | 3.67e-73 | 249 |
| MS.gene049233.t1 | AT1G77580 | 45.190 | 343 | 136 | 6 | 46 | 387 | 8 | 299 | 1.03e-69 | 240 |
| MS.gene049233.t1 | AT1G77580 | 45.190 | 343 | 136 | 6 | 46 | 387 | 8 | 299 | 2.30e-68 | 239 |
| MS.gene049233.t1 | AT1G77580 | 34.007 | 297 | 160 | 12 | 381 | 674 | 394 | 657 | 1.65e-12 | 71.6 |
| MS.gene049233.t1 | AT1G77580 | 45.190 | 343 | 136 | 6 | 46 | 387 | 42 | 333 | 2.66e-68 | 239 |
| MS.gene049233.t1 | AT1G77580 | 33.446 | 296 | 163 | 10 | 381 | 674 | 428 | 691 | 1.33e-12 | 72.0 |
| MS.gene049233.t1 | AT1G77580 | 45.190 | 343 | 136 | 6 | 46 | 387 | 42 | 333 | 2.66e-68 | 239 |
| MS.gene049233.t1 | AT1G77580 | 33.446 | 296 | 163 | 10 | 381 | 674 | 428 | 691 | 1.33e-12 | 72.0 |
| MS.gene049233.t1 | AT1G21810 | 34.413 | 494 | 213 | 22 | 211 | 674 | 3 | 415 | 1.58e-39 | 153 |
| MS.gene049233.t1 | AT1G19835 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 2.08e-38 | 154 |
| MS.gene049233.t1 | AT1G19835 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 2.08e-38 | 154 |
| MS.gene049233.t1 | AT1G19835 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 2.08e-38 | 154 |
| MS.gene049233.t1 | AT1G19835 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 2.08e-38 | 154 |
| MS.gene049233.t1 | AT1G19835 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 2.08e-38 | 154 |
| MS.gene049233.t1 | AT1G19835 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 2.08e-38 | 154 |
| MS.gene049233.t1 | AT4G36120 | 33.887 | 301 | 166 | 4 | 1 | 268 | 1 | 301 | 4.17e-31 | 131 |
| MS.gene049233.t1 | AT4G36120 | 33.887 | 301 | 166 | 4 | 1 | 268 | 1 | 301 | 4.17e-31 | 131 |
| MS.gene049233.t1 | AT1G47900 | 36.842 | 228 | 121 | 3 | 64 | 268 | 114 | 341 | 2.41e-28 | 122 |
| MS.gene049233.t1 | AT1G47900 | 36.842 | 228 | 121 | 3 | 64 | 268 | 114 | 341 | 2.41e-28 | 122 |
| MS.gene049233.t1 | AT1G47900 | 36.842 | 228 | 121 | 3 | 64 | 268 | 114 | 341 | 2.70e-28 | 122 |
| MS.gene049233.t1 | AT2G23360 | 29.758 | 289 | 143 | 5 | 1 | 266 | 1 | 252 | 7.56e-17 | 85.5 |
Find 134 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAAACAACTCTTGTAAT+TGG | 0.137119 | 3.3:-80330711 | MS.gene049233:CDS |
| CCACTCAAGCTCGTCTCTTT+TGG | 0.200759 | 3.3:+80330684 | None:intergenic |
| GGCTTTGTCTGCTGATAATT+TGG | 0.210676 | 3.3:-80329411 | MS.gene049233:CDS |
| CTGCTTTACCAAATCTTCTT+TGG | 0.249118 | 3.3:+80331175 | None:intergenic |
| AAGAGAAAGCAAGCAATATT+TGG | 0.255370 | 3.3:-80330470 | MS.gene049233:CDS |
| GTAATACCTCGAGCTGCTTT+TGG | 0.280342 | 3.3:+80329927 | None:intergenic |
| TGCTTTCTCTTTCTGCAGCT+TGG | 0.289852 | 3.3:+80330482 | None:intergenic |
| GCTTTCTCTTTCTGCAGCTT+GGG | 0.293528 | 3.3:+80330483 | None:intergenic |
| TCACCGCCATCTTGGGGAGC+TGG | 0.312775 | 3.3:+80328860 | None:intergenic |
| CTAAATCCATCTATTAGCTT+TGG | 0.314378 | 3.3:-80328794 | MS.gene049233:CDS |
| GTCTGCTTCAATTACAGAAT+TGG | 0.315854 | 3.3:-80330209 | MS.gene049233:CDS |
| GATCAAGTTAGTCATCTTAA+TGG | 0.317493 | 3.3:-80330805 | MS.gene049233:CDS |
| TGATCTTCTGCAGAGGCTTC+AGG | 0.318270 | 3.3:-80330596 | MS.gene049233:CDS |
| CAACTGCTCACCGCCATCTT+GGG | 0.319126 | 3.3:+80328853 | None:intergenic |
| GCAGTATTTCAGTGTCTTGA+TGG | 0.319413 | 3.3:+80329333 | None:intergenic |
| CACCGCCATCTTGGGGAGCT+GGG | 0.323771 | 3.3:+80328861 | None:intergenic |
| ATCAAGTTAGTCATCTTAAT+GGG | 0.324475 | 3.3:-80330804 | MS.gene049233:CDS |
| CATTAGTGCCAAAGAAGATT+TGG | 0.331279 | 3.3:-80331183 | MS.gene049233:CDS |
| GCAGCCTCGGAAATGACTTC+TGG | 0.331994 | 3.3:+80331272 | None:intergenic |
| GGAGAAGAAGCTAGCGAAAA+TGG | 0.341125 | 3.3:-80329990 | MS.gene049233:CDS |
| GGTTGGTCTGATGCAGTATC+TGG | 0.344154 | 3.3:+80330082 | None:intergenic |
| TGTTCTGCTCAAGACCTTGT+AGG | 0.358228 | 3.3:+80328740 | None:intergenic |
| ACTGATGTGCATACTCTAAC+TGG | 0.369885 | 3.3:-80331230 | MS.gene049233:CDS |
| TCAACTGCTCACCGCCATCT+TGG | 0.379423 | 3.3:+80328852 | None:intergenic |
| GACAGCTTCTTCAGCAACTT+TGG | 0.380920 | 3.3:+80331148 | None:intergenic |
| ACAGATAGCATGTCAGATAA+TGG | 0.389217 | 3.3:-80330322 | MS.gene049233:CDS |
| TCTGAGTTGAAAGGCCTATA+CGG | 0.395548 | 3.3:+80330152 | None:intergenic |
| GATGGATGATTTCCTCGAAA+TGG | 0.408615 | 3.3:-80330122 | MS.gene049233:CDS |
| TTCCCTGGCCAACATTTGGT+TGG | 0.409152 | 3.3:+80330065 | None:intergenic |
| CAGCAAGCCTTTCCATTTCG+AGG | 0.412193 | 3.3:+80330110 | None:intergenic |
| TGCAAACAACTCTTGTAATT+GGG | 0.422194 | 3.3:-80330710 | MS.gene049233:CDS |
| TGTGAATGACTCTGCATAAA+CGG | 0.424603 | 3.3:+80330342 | None:intergenic |
| TCTGTTCCCTGGCCAACATT+TGG | 0.426822 | 3.3:+80330061 | None:intergenic |
| TCATCTTAATGGGGAACTAA+AGG | 0.428665 | 3.3:-80330794 | MS.gene049233:CDS |
| CTGCATAGGGAAGGTGTTGA+TGG | 0.429525 | 3.3:-80329314 | MS.gene049233:CDS |
| GGCCATGAGTCATAATGCTT+TGG | 0.432790 | 3.3:+80330232 | None:intergenic |
| GAAAGTGATATGCGCAAATT+CGG | 0.437012 | 3.3:-80330280 | MS.gene049233:CDS |
| ACTTGATTCAGAGGACACTA+TGG | 0.441112 | 3.3:-80328906 | MS.gene049233:CDS |
| TAAAATTCAAAACCATTGAA+TGG | 0.442991 | 3.3:-80330516 | MS.gene049233:CDS |
| TTTGGCCAAGTGTGAAAAGT+TGG | 0.448967 | 3.3:-80329393 | MS.gene049233:CDS |
| CTCTTCATTTGACGCAGCCT+CGG | 0.453100 | 3.3:+80331259 | None:intergenic |
| AAAATTCAAAACCATTGAAT+GGG | 0.454203 | 3.3:-80330515 | MS.gene049233:CDS |
| GGTGCTCAAATCCCATTCAA+TGG | 0.455832 | 3.3:+80330504 | None:intergenic |
| TCTGCAGAGGCTTCAGGATG+TGG | 0.457307 | 3.3:-80330590 | MS.gene049233:CDS |
| GTTGAAGTCCCTTGCAACAT+TGG | 0.462272 | 3.3:-80328939 | MS.gene049233:CDS |
| AAGATTATCTGCTCATGATC+AGG | 0.469911 | 3.3:-80332136 | MS.gene049233:intron |
| AGACCAACCAAATGTTGGCC+AGG | 0.478188 | 3.3:-80330068 | MS.gene049233:CDS |
| AGAAGAACTGTGAGTTTCAC+TGG | 0.479117 | 3.3:+80332182 | None:intergenic |
| AGATAATGGAGAGAGGCTAT+TGG | 0.482617 | 3.3:-80330308 | MS.gene049233:CDS |
| AGTTGTTTGCAACAGCTTCA+AGG | 0.483000 | 3.3:+80330722 | None:intergenic |
| CCGGGTAAAGGAAGCAGAGT+TGG | 0.490552 | 3.3:-80329900 | MS.gene049233:CDS |
| GTTGCTGAAGAAGCTGTCTC+AGG | 0.501906 | 3.3:-80331143 | MS.gene049233:intron |
| CATACACTGTGTCTGTTCCC+TGG | 0.502835 | 3.3:+80330050 | None:intergenic |
| GGTATCACAAAGTCGGGTAA+AGG | 0.503164 | 3.3:-80329630 | MS.gene049233:CDS |
| AGCTCGAGGTATTACAAGGC+CGG | 0.505834 | 3.3:-80329919 | MS.gene049233:CDS |
| ACCACTGCACAAAACCGTAT+AGG | 0.506505 | 3.3:-80330166 | MS.gene049233:CDS |
| GCTCAAGGTATCACAAAGTC+GGG | 0.506661 | 3.3:-80329636 | MS.gene049233:CDS |
| TCGGGTAAAGGAAGCGGAGT+TGG | 0.507512 | 3.3:-80329618 | MS.gene049233:CDS |
| TATAGATGGAACGAAGGAGT+TGG | 0.511290 | 3.3:-80332236 | None:intergenic |
| AACTGCTCACCGCCATCTTG+GGG | 0.513505 | 3.3:+80328854 | None:intergenic |
| CCAAAAGAGACGAGCTTGAG+TGG | 0.515425 | 3.3:-80330684 | MS.gene049233:CDS |
| TTCAACTCAGATCGATCTGA+TGG | 0.516137 | 3.3:-80330140 | MS.gene049233:CDS |
| ATATGCGCAAATTCGGAGGC+AGG | 0.518093 | 3.3:-80330273 | MS.gene049233:CDS |
| TTGGTAGGTTCTATCCTACA+AGG | 0.519182 | 3.3:-80328754 | MS.gene049233:CDS |
| GGTATTACAAGGCCGGGTAA+AGG | 0.522637 | 3.3:-80329912 | MS.gene049233:CDS |
| GAGCCACGACATTCAATCTC+TGG | 0.528546 | 3.3:+80330410 | None:intergenic |
| AGGAAGAGATTGACAAAGAG+CGG | 0.530251 | 3.3:-80329715 | MS.gene049233:CDS |
| AGACACTGAAATACTGCATA+GGG | 0.534338 | 3.3:-80329327 | MS.gene049233:CDS |
| CATTCTCTGTCAACGATCGC+AGG | 0.538257 | 3.3:-80330381 | MS.gene049233:CDS |
| GGTAAAGGAAGCGGAGTTGG+AGG | 0.539727 | 3.3:-80329615 | MS.gene049233:CDS |
| AGGAAGAGATTGAGAAAGAG+CGG | 0.539922 | 3.3:-80329433 | MS.gene049233:CDS |
| CGGAAAACCATCGAATCTCT+AGG | 0.540417 | 3.3:-80328968 | MS.gene049233:CDS |
| ACCGCCATCTTGGGGAGCTG+GGG | 0.541230 | 3.3:+80328862 | None:intergenic |
| AGCTCAAGGTATCACAAAGT+CGG | 0.543179 | 3.3:-80329637 | MS.gene049233:CDS |
| GGTTCAAAAGAATGATGCAT+TGG | 0.543300 | 3.3:-80330011 | MS.gene049233:CDS |
| GGGAACTAAAGGATTGTATG+AGG | 0.545681 | 3.3:-80330783 | MS.gene049233:CDS |
| GTGGAAAGTTACTGAGCTTG+AGG | 0.546401 | 3.3:-80330665 | MS.gene049233:CDS |
| ATTATATTTAGGCTGGGAGA+AGG | 0.546698 | 3.3:-80330896 | MS.gene049233:intron |
| CTGCTGTCCTAGAGATTCGA+TGG | 0.547891 | 3.3:+80328961 | None:intergenic |
| GAGGCTTCAGGATGTGGAGA+GGG | 0.549030 | 3.3:-80330584 | MS.gene049233:CDS |
| AGACACAGTGTATGCTGAAG+TGG | 0.551827 | 3.3:-80330041 | MS.gene049233:CDS |
| GCAGGAGAAGGAACTAGCAT+TGG | 0.555868 | 3.3:-80329014 | MS.gene049233:intron |
| AGACTTCATACTTGATTCAG+AGG | 0.557101 | 3.3:-80328915 | MS.gene049233:CDS |
| TCGGAAATGACTTCTGGAGA+TGG | 0.558364 | 3.3:+80331278 | None:intergenic |
| ACAAAGTCGGGTAAAGGAAG+CGG | 0.558654 | 3.3:-80329624 | MS.gene049233:CDS |
| AACCAAAGCATTATGACTCA+TGG | 0.559723 | 3.3:-80330234 | MS.gene049233:CDS |
| CGAGGCTGCGTCAAATGAAG+AGG | 0.560290 | 3.3:-80331258 | MS.gene049233:CDS |
| GGTAAAGGAAGCAGAGTTGG+AGG | 0.562324 | 3.3:-80329897 | MS.gene049233:CDS |
| GGAAGAGATTGACAAAGAGC+GGG | 0.567707 | 3.3:-80329714 | MS.gene049233:CDS |
| CCAACTCTGCTTCCTTTACC+CGG | 0.569027 | 3.3:+80329900 | None:intergenic |
| TGGCGAGTTAATGTTCAAGC+AGG | 0.569151 | 3.3:-80329294 | MS.gene049233:intron |
| GCTCGAGGTATTACAAGGCC+GGG | 0.574482 | 3.3:-80329918 | MS.gene049233:CDS |
| TGCAGATAAACTCGAGCTAG+AGG | 0.575538 | 3.3:-80329684 | MS.gene049233:CDS |
| GGAAGAGATTGAGAAAGAGC+GGG | 0.579765 | 3.3:-80329432 | MS.gene049233:CDS |
| AAGACACTGAAATACTGCAT+AGG | 0.582843 | 3.3:-80329328 | MS.gene049233:CDS |
| ACTGAGAGCTGCTCAAACTG+AGG | 0.583542 | 3.3:-80329489 | MS.gene049233:CDS |
| ACTGAGAGCTGCTCAAACTG+AGG | 0.583542 | 3.3:-80329771 | MS.gene049233:CDS |
| GGAGGCAGGGAGATAAATGA+AGG | 0.583949 | 3.3:-80330259 | MS.gene049233:CDS |
| ATGATTTCCTCGAAATGGAA+AGG | 0.588479 | 3.3:-80330117 | MS.gene049233:CDS |
| TGAAGTCTTCCAATGTTGCA+AGG | 0.589752 | 3.3:+80328930 | None:intergenic |
| ACAACCCCAGCTCCCCAAGA+TGG | 0.590488 | 3.3:-80328866 | MS.gene049233:CDS |
| TATTATTATAGATGGAACGA+AGG | 0.591091 | 3.3:-80332242 | None:intergenic |
| AAGCAGCTCGAGGTATTACA+AGG | 0.592236 | 3.3:-80329923 | MS.gene049233:CDS |
| TGGAACGAAGGAGTTGGATG+TGG | 0.592305 | 3.3:-80332230 | MS.gene049233:CDS |
| TCAGATCGATCTGAGTTGAA+AGG | 0.599108 | 3.3:+80330143 | None:intergenic |
| GCATCAGACCAACCAAATGT+TGG | 0.607554 | 3.3:-80330073 | MS.gene049233:CDS |
| TAATGGAGAGAGGCTATTGG+TGG | 0.608912 | 3.3:-80330305 | MS.gene049233:CDS |
| AGAACCTACCAAAACTGAAG+TGG | 0.609934 | 3.3:+80328765 | None:intergenic |
| GACCAACCAAATGTTGGCCA+GGG | 0.612070 | 3.3:-80330067 | MS.gene049233:CDS |
| GAAGTCTTCCAATGTTGCAA+GGG | 0.615238 | 3.3:+80328931 | None:intergenic |
| AGAGGCTTCAGGATGTGGAG+AGG | 0.619121 | 3.3:-80330585 | MS.gene049233:CDS |
| GGCACTAATGTCTAAGAGAG+CGG | 0.621884 | 3.3:+80331196 | None:intergenic |
| TGGAGATGGAACAGTTTGAG+TGG | 0.623998 | 3.3:+80331292 | None:intergenic |
| AGATAAAATTGAGCTAGAGA+TGG | 0.626676 | 3.3:-80329963 | MS.gene049233:CDS |
| GTATGCTGAAGTGGAAGCAT+TGG | 0.628182 | 3.3:-80330032 | MS.gene049233:CDS |
| ACCCCAGCTCCCCAAGATGG+CGG | 0.628407 | 3.3:-80328863 | MS.gene049233:CDS |
| ATCTCCAGAAGTCATTTCCG+AGG | 0.630862 | 3.3:-80331276 | MS.gene049233:CDS |
| GAGAGCTGCTCAAACTGAGG+CGG | 0.637369 | 3.3:-80329768 | MS.gene049233:CDS |
| TTAACTCTGATCTTCTGCAG+AGG | 0.638024 | 3.3:-80330603 | MS.gene049233:CDS |
| AGTGATATGCGCAAATTCGG+AGG | 0.644549 | 3.3:-80330277 | MS.gene049233:CDS |
| TTTGGAGAGTATAACGAAGG+TGG | 0.647288 | 3.3:-80330452 | MS.gene049233:CDS |
| TATGCGCAAATTCGGAGGCA+GGG | 0.647344 | 3.3:-80330272 | MS.gene049233:CDS |
| AATTCTGTAATTGAAGCAGA+CGG | 0.653774 | 3.3:+80330211 | None:intergenic |
| AGATAAACTCGAGCTAGAGG+TGG | 0.661721 | 3.3:-80329681 | MS.gene049233:CDS |
| TGAACTACAATCTCGACTCG+AGG | 0.662262 | 3.3:-80330542 | MS.gene049233:CDS |
| TCAAGTTAGTCATCTTAATG+GGG | 0.667984 | 3.3:-80330803 | MS.gene049233:CDS |
| TGCTGCAAAACAGCAGAATG+CGG | 0.670569 | 3.3:-80330836 | MS.gene049233:CDS |
| GCATGTCAGATAATGGAGAG+AGG | 0.673908 | 3.3:-80330315 | MS.gene049233:CDS |
| CGAGTGCCAAAAGCAGCTCG+AGG | 0.681288 | 3.3:-80329933 | MS.gene049233:CDS |
| ACTGAAATACTGCATAGGGA+AGG | 0.684433 | 3.3:-80329323 | MS.gene049233:CDS |
| GTGCCAGAGATTGAATGTCG+TGG | 0.689035 | 3.3:-80330413 | MS.gene049233:CDS |
| ACTAATGTCTAAGAGAGCGG+CGG | 0.698941 | 3.3:+80331199 | None:intergenic |
| GAAGAAGCTAGCGAAAATGG+AGG | 0.702295 | 3.3:-80329987 | MS.gene049233:CDS |
| ATATTTGGAGAGTATAACGA+AGG | 0.713817 | 3.3:-80330455 | MS.gene049233:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGAATTGAATATTATTTA+AGG | + | chr3.3:80329353-80329372 | None:intergenic | 10.0% |
| !!! | TATTTTTTTATAAACCATAA+CGG | + | chr3.3:80329992-80330011 | None:intergenic | 10.0% |
| !!! | CATTGTTTTATTTTATTCTA+CGG | - | chr3.3:80329543-80329562 | MS.gene049233:CDS | 15.0% |
| !!! | TTACATGATTTTAAGTTTAT+AGG | - | chr3.3:80329509-80329528 | MS.gene049233:CDS | 15.0% |
| !! | AAAATTCAAAACCATTGAAT+GGG | - | chr3.3:80330464-80330483 | MS.gene049233:CDS | 20.0% |
| !! | AATGAAGGAGAAATTTAAAA+TGG | + | chr3.3:80329876-80329895 | None:intergenic | 20.0% |
| !! | ATATTTGATTATATTTAGGC+TGG | - | chr3.3:80330076-80330095 | MS.gene049233:CDS | 20.0% |
| !! | TAAAATTCAAAACCATTGAA+TGG | - | chr3.3:80330463-80330482 | MS.gene049233:CDS | 20.0% |
| !! | TATTTGATTATATTTAGGCT+GGG | - | chr3.3:80330077-80330096 | MS.gene049233:CDS | 20.0% |
| !!! | AGTTAAAATTTTAACATGTG+AGG | - | chr3.3:80331851-80331870 | MS.gene049233:intron | 20.0% |
| !!! | ATTCAACAAGGTTTTTAATA+GGG | + | chr3.3:80329465-80329484 | None:intergenic | 20.0% |
| !!! | CAAAATTCCAAAATATTTTC+TGG | + | chr3.3:80331886-80331905 | None:intergenic | 20.0% |
| !!! | CAGAAAATATTTTGGAATTT+TGG | - | chr3.3:80331884-80331903 | MS.gene049233:intron | 20.0% |
| !!! | TCATAAACCATCTTATATTT+TGG | - | chr3.3:80331931-80331950 | MS.gene049233:intron | 20.0% |
| !!! | TTAACTTCTATTTTCAATAC+AGG | - | chr3.3:80328892-80328911 | MS.gene049233:CDS | 20.0% |
| !!! | TTTTAAATTTCTCCTTCATT+TGG | - | chr3.3:80329876-80329895 | MS.gene049233:CDS | 20.0% |
| ! | AATCAGACCAAAAAACAAAA+AGG | + | chr3.3:80329945-80329964 | None:intergenic | 25.0% |
| ! | AATGACATAATTCAATGTGT+CGG | + | chr3.3:80329248-80329267 | None:intergenic | 25.0% |
| ! | AATGATGCCAAAATATAAGA+TGG | + | chr3.3:80331941-80331960 | None:intergenic | 25.0% |
| ! | ACCTAATATCATCTAAACAT+AGG | - | chr3.3:80330023-80330042 | MS.gene049233:CDS | 25.0% |
| ! | ACCTATGTTTAGATGATATT+AGG | + | chr3.3:80330027-80330046 | None:intergenic | 25.0% |
| ! | ATCAAGTTAGTCATCTTAAT+GGG | - | chr3.3:80330175-80330194 | MS.gene049233:CDS | 25.0% |
| ! | ATCTAAACATAGGTTATCAA+AGG | - | chr3.3:80330033-80330052 | MS.gene049233:CDS | 25.0% |
| ! | CTCTCATTAAAACAAAATTG+AGG | - | chr3.3:80329096-80329115 | MS.gene049233:intron | 25.0% |
| ! | TAGTAACTAGTAACCATATT+TGG | - | chr3.3:80328985-80329004 | MS.gene049233:CDS | 25.0% |
| !! | GATTCAACAAGGTTTTTAAT+AGG | + | chr3.3:80329466-80329485 | None:intergenic | 25.0% |
| !!! | AGGTTGTCATTTTTGTTAAT+AGG | - | chr3.3:80329014-80329033 | MS.gene049233:intron | 25.0% |
| AAGAGAAAGCAAGCAATATT+TGG | - | chr3.3:80330509-80330528 | MS.gene049233:CDS | 30.0% | |
| AAGCAACAATTTGAACAATC+AGG | + | chr3.3:80329612-80329631 | None:intergenic | 30.0% | |
| AATAACGTAGCCAAAAAAAG+AGG | + | chr3.3:80328871-80328890 | None:intergenic | 30.0% | |
| AATTCTGTAATTGAAGCAGA+CGG | + | chr3.3:80330771-80330790 | None:intergenic | 30.0% | |
| AGATAAAATTGAGCTAGAGA+TGG | - | chr3.3:80331016-80331035 | MS.gene049233:intron | 30.0% | |
| AGCAACAATTTGAACAATCA+GGG | + | chr3.3:80329611-80329630 | None:intergenic | 30.0% | |
| CTTGTATTCTTGATTCAACA+AGG | + | chr3.3:80329477-80329496 | None:intergenic | 30.0% | |
| GATCAAGTTAGTCATCTTAA+TGG | - | chr3.3:80330174-80330193 | MS.gene049233:CDS | 30.0% | |
| TCAAGTTAGTCATCTTAATG+GGG | - | chr3.3:80330176-80330195 | MS.gene049233:CDS | 30.0% | |
| TGCAAACAACTCTTGTAATT+GGG | - | chr3.3:80330269-80330288 | MS.gene049233:CDS | 30.0% | |
| TTGCAAACAACTCTTGTAAT+TGG | - | chr3.3:80330268-80330287 | MS.gene049233:CDS | 30.0% | |
| ! | AAATTGTTGCTTGTTTGAGA+CGG | - | chr3.3:80329620-80329639 | MS.gene049233:CDS | 30.0% |
| ! | AAGGTTTTTAATAGGGACTT+GGG | + | chr3.3:80329458-80329477 | None:intergenic | 30.0% |
| ! | ATATTTGGAGAGTATAACGA+AGG | - | chr3.3:80330524-80330543 | MS.gene049233:CDS | 30.0% |
| ! | CCAGATTCCAGAAAATATTT+TGG | - | chr3.3:80331876-80331895 | MS.gene049233:intron | 30.0% |
| ! | CTAAATCCATCTATTAGCTT+TGG | - | chr3.3:80332185-80332204 | MS.gene049233:CDS | 30.0% |
| ! | CTTCTATTTTCAATACAGGA+AGG | - | chr3.3:80328896-80328915 | MS.gene049233:CDS | 30.0% |
| ! | CTTTTTCCAAAGCTAATAGA+TGG | + | chr3.3:80332194-80332213 | None:intergenic | 30.0% |
| ! | TATTTTCAATACAGGAAGGA+GGG | - | chr3.3:80328900-80328919 | MS.gene049233:CDS | 30.0% |
| !!! | AGCATTCTCATTTTTTGCTT+GGG | + | chr3.3:80331462-80331481 | None:intergenic | 30.0% |
| !!! | AGCTTTCTCATTTTTTTCTC+GGG | + | chr3.3:80331180-80331199 | None:intergenic | 30.0% |
| !!! | CAGCTTTCTCATTTTTTTCT+CGG | + | chr3.3:80331181-80331200 | None:intergenic | 30.0% |
| !!! | CCAAAATATTTTCTGGAATC+TGG | + | chr3.3:80331879-80331898 | None:intergenic | 30.0% |
| !!! | GTATCGACCTTTTTGTTTTT+TGG | - | chr3.3:80329935-80329954 | MS.gene049233:CDS | 30.0% |
| AAGAAGAAGAAGAGAGATTG+AGG | - | chr3.3:80329046-80329065 | MS.gene049233:intron | 35.0% | |
| AAGACACTGAAATACTGCAT+AGG | - | chr3.3:80331651-80331670 | MS.gene049233:intron | 35.0% | |
| AAGATTATCTGCTCATGATC+AGG | - | chr3.3:80328843-80328862 | MS.gene049233:CDS | 35.0% | |
| AATGTTCAAGCAGGTAAGTT+TGG | - | chr3.3:80331694-80331713 | MS.gene049233:intron | 35.0% | |
| ACAACCTTCACTTCCAAATA+TGG | + | chr3.3:80329001-80329020 | None:intergenic | 35.0% | |
| ACAGATAGCATGTCAGATAA+TGG | - | chr3.3:80330657-80330676 | MS.gene049233:CDS | 35.0% | |
| AGAAGAAGAAGAGAGATTGA+GGG | - | chr3.3:80329047-80329066 | MS.gene049233:intron | 35.0% | |
| AGACACTGAAATACTGCATA+GGG | - | chr3.3:80331652-80331671 | MS.gene049233:intron | 35.0% | |
| AGACTTCATACTTGATTCAG+AGG | - | chr3.3:80332064-80332083 | MS.gene049233:intron | 35.0% | |
| AGGGATCTCAAACTTAAAAG+CGG | + | chr3.3:80329592-80329611 | None:intergenic | 35.0% | |
| ATGATTTCCTCGAAATGGAA+AGG | - | chr3.3:80330862-80330881 | MS.gene049233:CDS | 35.0% | |
| ATTATATTTAGGCTGGGAGA+AGG | - | chr3.3:80330083-80330102 | MS.gene049233:CDS | 35.0% | |
| CATTAGTGCCAAAGAAGATT+TGG | - | chr3.3:80329796-80329815 | MS.gene049233:CDS | 35.0% | |
| CTGCTTTACCAAATCTTCTT+TGG | + | chr3.3:80329807-80329826 | None:intergenic | 35.0% | |
| GAAAGTGATATGCGCAAATT+CGG | - | chr3.3:80330699-80330718 | MS.gene049233:CDS | 35.0% | |
| GATCTCAAAAATCTGTTCAC+TGG | - | chr3.3:80331241-80331260 | MS.gene049233:CDS | 35.0% | |
| GGTTCAAAAGAATGATGCAT+TGG | - | chr3.3:80330968-80330987 | MS.gene049233:intron | 35.0% | |
| GTAACCATATTTGGAAGTGA+AGG | - | chr3.3:80328994-80329013 | MS.gene049233:CDS | 35.0% | |
| GTCTGCTTCAATTACAGAAT+TGG | - | chr3.3:80330770-80330789 | MS.gene049233:CDS | 35.0% | |
| TAAACTTGACAGCCAAATGA+AGG | + | chr3.3:80329891-80329910 | None:intergenic | 35.0% | |
| TCATCTTAATGGGGAACTAA+AGG | - | chr3.3:80330185-80330204 | MS.gene049233:CDS | 35.0% | |
| TGTGAATGACTCTGCATAAA+CGG | + | chr3.3:80330640-80330659 | None:intergenic | 35.0% | |
| ! | AACCAAAGCATTATGACTCA+TGG | - | chr3.3:80330745-80330764 | MS.gene049233:CDS | 35.0% |
| ! | ACGCCTTCAATCAAAAGTAT+TGG | + | chr3.3:80329190-80329209 | None:intergenic | 35.0% |
| ! | ATTTTCAATACAGGAAGGAG+GGG | - | chr3.3:80328901-80328920 | MS.gene049233:CDS | 35.0% |
| ! | CAAGGTTTTTAATAGGGACT+TGG | + | chr3.3:80329459-80329478 | None:intergenic | 35.0% |
| ! | CTATTTTCAATACAGGAAGG+AGG | - | chr3.3:80328899-80328918 | MS.gene049233:CDS | 35.0% |
| ! | GAGGGAAAGCTAAAATGTTT+TGG | - | chr3.3:80329065-80329084 | MS.gene049233:intron | 35.0% |
| ! | TTCTTCCAACTTTTCACACT+TGG | + | chr3.3:80331594-80331613 | None:intergenic | 35.0% |
| !! | ATTTTGGCATCATTTGATGC+AGG | - | chr3.3:80331947-80331966 | MS.gene049233:intron | 35.0% |
| !! | GCACCAATACTTTTGATTGA+AGG | - | chr3.3:80329184-80329203 | MS.gene049233:intron | 35.0% |
| !!! | CAGCATTCTCATTTTTTGCT+TGG | + | chr3.3:80331463-80331482 | None:intergenic | 35.0% |
| !!! | TGATCAGGTACCTCTTTTTT+TGG | - | chr3.3:80328858-80328877 | MS.gene049233:CDS | 35.0% |
| AACTTAAAAGCGGACAGAAC+AGG | + | chr3.3:80329582-80329601 | None:intergenic | 40.0% | |
| ACTGAAATACTGCATAGGGA+AGG | - | chr3.3:80331656-80331675 | MS.gene049233:intron | 40.0% | |
| ACTGATGTGCATACTCTAAC+TGG | - | chr3.3:80329749-80329768 | MS.gene049233:CDS | 40.0% | |
| ACTTGATTCAGAGGACACTA+TGG | - | chr3.3:80332073-80332092 | MS.gene049233:intron | 40.0% | |
| AGAACCTACCAAAACTGAAG+TGG | + | chr3.3:80332217-80332236 | None:intergenic | 40.0% | |
| AGAAGAACTGTGAGTTTCAC+TGG | + | chr3.3:80328800-80328819 | None:intergenic | 40.0% | |
| AGCTAGCTGTTCTTTGTGTT+TGG | - | chr3.3:80328936-80328955 | MS.gene049233:CDS | 40.0% | |
| AGGAAGAGATTGACAAAGAG+CGG | - | chr3.3:80331264-80331283 | MS.gene049233:CDS | 40.0% | |
| AGGAAGAGATTGAGAAAGAG+CGG | - | chr3.3:80331546-80331565 | MS.gene049233:intron | 40.0% | |
| AGTTGTTTGCAACAGCTTCA+AGG | + | chr3.3:80330260-80330279 | None:intergenic | 40.0% | |
| ATAGGGACTTGGGTATTATG+AGG | + | chr3.3:80329448-80329467 | None:intergenic | 40.0% | |
| CAAGCTATGAAGCACAAACA+CGG | + | chr3.3:80329310-80329329 | None:intergenic | 40.0% | |
| CTAGCTGTTCTTTGTGTTTG+GGG | - | chr3.3:80328938-80328957 | MS.gene049233:CDS | 40.0% | |
| CTCAAAAATCTGTTCACTGG+AGG | - | chr3.3:80331244-80331263 | MS.gene049233:CDS | 40.0% | |
| GAAGTCTTCCAATGTTGCAA+GGG | + | chr3.3:80332051-80332070 | None:intergenic | 40.0% | |
| GATGGATGATTTCCTCGAAA+TGG | - | chr3.3:80330857-80330876 | MS.gene049233:CDS | 40.0% | |
| GCAGTATTTCAGTGTCTTGA+TGG | + | chr3.3:80331649-80331668 | None:intergenic | 40.0% | |
| GCTAGCTGTTCTTTGTGTTT+GGG | - | chr3.3:80328937-80328956 | MS.gene049233:CDS | 40.0% | |
| GGGAACTAAAGGATTGTATG+AGG | - | chr3.3:80330196-80330215 | MS.gene049233:CDS | 40.0% | |
| TGAAGTCTTCCAATGTTGCA+AGG | + | chr3.3:80332052-80332071 | None:intergenic | 40.0% | |
| TTAACTCTGATCTTCTGCAG+AGG | - | chr3.3:80330376-80330395 | MS.gene049233:CDS | 40.0% | |
| TTCAACTCAGATCGATCTGA+TGG | - | chr3.3:80330839-80330858 | MS.gene049233:CDS | 40.0% | |
| TTGGTAGGTTCTATCCTACA+AGG | - | chr3.3:80332225-80332244 | MS.gene049233:CDS | 40.0% | |
| TTTGGCCAAGTGTGAAAAGT+TGG | - | chr3.3:80331586-80331605 | MS.gene049233:intron | 40.0% | |
| ! | AGCTCAAGGTATCACAAAGT+CGG | - | chr3.3:80331342-80331361 | MS.gene049233:intron | 40.0% |
| ! | ATGCCACTTAAATACTCCAC+CGG | - | chr3.3:80329383-80329402 | MS.gene049233:CDS | 40.0% |
| ! | CTAGAGATTCGATGGTTTTC+CGG | + | chr3.3:80332013-80332032 | None:intergenic | 40.0% |
| ! | CTAGTAGATTTTCTGAGTGC+CGG | - | chr3.3:80331991-80332010 | MS.gene049233:intron | 40.0% |
| ! | GACAATCTCTCTCTTTTTGG+AGG | - | chr3.3:80331781-80331800 | MS.gene049233:intron | 40.0% |
| ! | GCTGACAATCTCTCTCTTTT+TGG | - | chr3.3:80331778-80331797 | MS.gene049233:intron | 40.0% |
| ! | GGAAAAAGCCACTTCAGTTT+TGG | - | chr3.3:80332206-80332225 | MS.gene049233:CDS | 40.0% |
| ! | GGCTTTGTCTGCTGATAATT+TGG | - | chr3.3:80331568-80331587 | MS.gene049233:intron | 40.0% |
| ! | TAGTATGACTATGAGGTGTC+CGG | + | chr3.3:80329405-80329424 | None:intergenic | 40.0% |
| ! | TCAGATCGATCTGAGTTGAA+AGG | + | chr3.3:80330839-80330858 | None:intergenic | 40.0% |
| ! | TCTGAGTTGAAAGGCCTATA+CGG | + | chr3.3:80330830-80330849 | None:intergenic | 40.0% |
| ! | TTCAAGTTCTGTCTCCGTTA+TGG | - | chr3.3:80329975-80329994 | MS.gene049233:CDS | 40.0% |
| ! | TTTGGAGAGTATAACGAAGG+TGG | - | chr3.3:80330527-80330546 | MS.gene049233:CDS | 40.0% |
| !! | AAAGCCACTTCAGTTTTGGT+AGG | - | chr3.3:80332210-80332229 | MS.gene049233:CDS | 40.0% |
| !! | AGATAATGGAGAGAGGCTAT+TGG | - | chr3.3:80330671-80330690 | MS.gene049233:CDS | 40.0% |
| !! | ATCTCTCTCTTTTTGGAGGA+TGG | - | chr3.3:80331785-80331804 | MS.gene049233:intron | 40.0% |
| !! | CAAAAGTATTGGTGCTACAG+AGG | + | chr3.3:80329179-80329198 | None:intergenic | 40.0% |
| !! | GTGATACCTTGAGCTGTTTT+TGG | + | chr3.3:80331337-80331356 | None:intergenic | 40.0% |
| AAAGGTCGATACCAATGCCT+CGG | + | chr3.3:80329927-80329946 | None:intergenic | 45.0% | |
| ACAAAGTCGGGTAAAGGAAG+CGG | - | chr3.3:80331355-80331374 | MS.gene049233:intron | 45.0% | |
| ACCACTGCACAAAACCGTAT+AGG | - | chr3.3:80330813-80330832 | MS.gene049233:CDS | 45.0% | |
| ACTAATGTCTAAGAGAGCGG+CGG | + | chr3.3:80329783-80329802 | None:intergenic | 45.0% | |
| ACTAGTTACTACGACTACCC+TGG | + | chr3.3:80328976-80328995 | None:intergenic | 45.0% | |
| AGACACAGTGTATGCTGAAG+TGG | - | chr3.3:80330938-80330957 | MS.gene049233:intron | 45.0% | |
| AGATAAACTCGAGCTAGAGG+TGG | - | chr3.3:80331298-80331317 | MS.gene049233:CDS | 45.0% | |
| AGTGATATGCGCAAATTCGG+AGG | - | chr3.3:80330702-80330721 | MS.gene049233:CDS | 45.0% | |
| ATCAGTGTATGTGTCATGCC+TGG | - | chr3.3:80329281-80329300 | MS.gene049233:intron | 45.0% | |
| ATCTCCAGAAGTCATTTCCG+AGG | - | chr3.3:80329703-80329722 | MS.gene049233:CDS | 45.0% | |
| CGGAAAACCATCGAATCTCT+AGG | - | chr3.3:80332011-80332030 | MS.gene049233:intron | 45.0% | |
| CGTCGAGTAGTATGACTATG+AGG | + | chr3.3:80329412-80329431 | None:intergenic | 45.0% | |
| CTAGTTACTACGACTACCCT+GGG | + | chr3.3:80328975-80328994 | None:intergenic | 45.0% | |
| GAAGAAGCTAGCGAAAATGG+AGG | - | chr3.3:80330992-80331011 | MS.gene049233:intron | 45.0% | |
| GACAGCTTCTTCAGCAACTT+TGG | + | chr3.3:80329834-80329853 | None:intergenic | 45.0% | |
| GCATCAGACCAACCAAATGT+TGG | - | chr3.3:80330906-80330925 | MS.gene049233:intron | 45.0% | |
| GCATCATTTGATGCAGGAGA+AGG | - | chr3.3:80331953-80331972 | MS.gene049233:intron | 45.0% | |
| GCTTTCTCTTTCTGCAGCTT+GGG | + | chr3.3:80330499-80330518 | None:intergenic | 45.0% | |
| GGAAGAGATTGACAAAGAGC+GGG | - | chr3.3:80331265-80331284 | MS.gene049233:CDS | 45.0% | |
| GGAAGAGATTGAGAAAGAGC+GGG | - | chr3.3:80331547-80331566 | MS.gene049233:intron | 45.0% | |
| GGAGAAGAAGCTAGCGAAAA+TGG | - | chr3.3:80330989-80331008 | MS.gene049233:intron | 45.0% | |
| GGCACTAATGTCTAAGAGAG+CGG | + | chr3.3:80329786-80329805 | None:intergenic | 45.0% | |
| GGCCATGAGTCATAATGCTT+TGG | + | chr3.3:80330750-80330769 | None:intergenic | 45.0% | |
| GGTATCACAAAGTCGGGTAA+AGG | - | chr3.3:80331349-80331368 | MS.gene049233:intron | 45.0% | |
| GGTGCTCAAATCCCATTCAA+TGG | + | chr3.3:80330478-80330497 | None:intergenic | 45.0% | |
| GTGGAAAGTTACTGAGCTTG+AGG | - | chr3.3:80330314-80330333 | MS.gene049233:CDS | 45.0% | |
| GTTGAAGTCCCTTGCAACAT+TGG | - | chr3.3:80332040-80332059 | MS.gene049233:intron | 45.0% | |
| TAATGGAGAGAGGCTATTGG+TGG | - | chr3.3:80330674-80330693 | MS.gene049233:CDS | 45.0% | |
| TACTACTCGACGTCAGACTT+AGG | - | chr3.3:80329420-80329439 | MS.gene049233:CDS | 45.0% | |
| TGCAGATAAACTCGAGCTAG+AGG | - | chr3.3:80331295-80331314 | MS.gene049233:CDS | 45.0% | |
| TGCTGCAAAACAGCAGAATG+CGG | - | chr3.3:80330143-80330162 | MS.gene049233:CDS | 45.0% | |
| TGCTTTCTCTTTCTGCAGCT+TGG | + | chr3.3:80330500-80330519 | None:intergenic | 45.0% | |
| TGGAGATGGAACAGTTTGAG+TGG | + | chr3.3:80329690-80329709 | None:intergenic | 45.0% | |
| TGGCATATACCTGTACAGCA+CGG | + | chr3.3:80329670-80329689 | None:intergenic | 45.0% | |
| TGGCGAGTTAATGTTCAAGC+AGG | - | chr3.3:80331685-80331704 | MS.gene049233:intron | 45.0% | |
| TGGGGTTATGTGAATTCCCA+GGG | - | chr3.3:80328956-80328975 | MS.gene049233:CDS | 45.0% | |
| TTGGGGTTATGTGAATTCCC+AGG | - | chr3.3:80328955-80328974 | MS.gene049233:CDS | 45.0% | |
| TTTATCCAGTGAGAAAGCCG+AGG | - | chr3.3:80329907-80329926 | MS.gene049233:CDS | 45.0% | |
| ! | AAGCAGCTCGAGGTATTACA+AGG | - | chr3.3:80331056-80331075 | MS.gene049233:intron | 45.0% |
| ! | GCTCAAGGTATCACAAAGTC+GGG | - | chr3.3:80331343-80331362 | MS.gene049233:intron | 45.0% |
| ! | GTATGCTGAAGTGGAAGCAT+TGG | - | chr3.3:80330947-80330966 | MS.gene049233:intron | 45.0% |
| ! | TCGGAAATGACTTCTGGAGA+TGG | + | chr3.3:80329704-80329723 | None:intergenic | 45.0% |
| ! | TGAACTACAATCTCGACTCG+AGG | - | chr3.3:80330437-80330456 | MS.gene049233:CDS | 45.0% |
| ! | TGTCCGGTGGAGTATTTAAG+TGG | + | chr3.3:80329389-80329408 | None:intergenic | 45.0% |
| !! | ATTCAATGTGTCGGTGCTGT+AGG | + | chr3.3:80329239-80329258 | None:intergenic | 45.0% |
| !! | GCATGTCAGATAATGGAGAG+AGG | - | chr3.3:80330664-80330683 | MS.gene049233:CDS | 45.0% |
| !! | GTAATACCTCGAGCTGCTTT+TGG | + | chr3.3:80331055-80331074 | None:intergenic | 45.0% |
| !! | ATTAATATTTGATTATATTT+AGG | - | chr3.3:80330072-80330091 | MS.gene049233:CDS | 5.0% |
| ACTGAGAGCTGCTCAAACTG+AGG | - | chr3.3:80331208-80331227 | MS.gene049233:CDS | 50.0% | |
| AGACCAACCAAATGTTGGCC+AGG | - | chr3.3:80330911-80330930 | MS.gene049233:intron | 50.0% | |
| ATATGCGCAAATTCGGAGGC+AGG | - | chr3.3:80330706-80330725 | MS.gene049233:CDS | 50.0% | |
| ATGCTTTCTCCGTGCTGTAC+AGG | - | chr3.3:80329658-80329677 | MS.gene049233:CDS | 50.0% | |
| CAGCAAGCCTTTCCATTTCG+AGG | + | chr3.3:80330872-80330891 | None:intergenic | 50.0% | |
| CATACACTGTGTCTGTTCCC+TGG | + | chr3.3:80330932-80330951 | None:intergenic | 50.0% | |
| CATTCTCTGTCAACGATCGC+AGG | - | chr3.3:80330598-80330617 | MS.gene049233:CDS | 50.0% | |
| CCAAAAGAGACGAGCTTGAG+TGG | - | chr3.3:80330295-80330314 | MS.gene049233:CDS | 50.0% | |
| CCAACTCTGCTTCCTTTACC+CGG | + | chr3.3:80331082-80331101 | None:intergenic | 50.0% | |
| CGAGTGCCAAAAACAGCTCA+AGG | - | chr3.3:80331328-80331347 | MS.gene049233:intron | 50.0% | |
| CTCTTCATTTGACGCAGCCT+CGG | + | chr3.3:80329723-80329742 | None:intergenic | 50.0% | |
| CTGCTGTCCTAGAGATTCGA+TGG | + | chr3.3:80332021-80332040 | None:intergenic | 50.0% | |
| GAACAGCTAGCTACCTACCT+AGG | + | chr3.3:80328928-80328947 | None:intergenic | 50.0% | |
| GACCAACCAAATGTTGGCCA+GGG | - | chr3.3:80330912-80330931 | MS.gene049233:intron | 50.0% | |
| GAGCCACGACATTCAATCTC+TGG | + | chr3.3:80330572-80330591 | None:intergenic | 50.0% | |
| GCAGGAGAAGGAACTAGCAT+TGG | - | chr3.3:80331965-80331984 | MS.gene049233:intron | 50.0% | |
| GCTATGAAGCACAAACACGG+AGG | + | chr3.3:80329307-80329326 | None:intergenic | 50.0% | |
| GGAGGCAGGGAGATAAATGA+AGG | - | chr3.3:80330720-80330739 | MS.gene049233:CDS | 50.0% | |
| GGTAAAGGAAGCAGAGTTGG+AGG | - | chr3.3:80331082-80331101 | MS.gene049233:intron | 50.0% | |
| GGTATTACAAGGCCGGGTAA+AGG | - | chr3.3:80331067-80331086 | MS.gene049233:intron | 50.0% | |
| GTGCCAGAGATTGAATGTCG+TGG | - | chr3.3:80330566-80330585 | MS.gene049233:CDS | 50.0% | |
| GTTGCTGAAGAAGCTGTCTC+AGG | - | chr3.3:80329836-80329855 | MS.gene049233:CDS | 50.0% | |
| TATGCGCAAATTCGGAGGCA+GGG | - | chr3.3:80330707-80330726 | MS.gene049233:CDS | 50.0% | |
| TCTGTTCCCTGGCCAACATT+TGG | + | chr3.3:80330921-80330940 | None:intergenic | 50.0% | |
| TGATCTTCTGCAGAGGCTTC+AGG | - | chr3.3:80330383-80330402 | MS.gene049233:CDS | 50.0% | |
| TGGAACGAAGGAGTTGGATG+TGG | - | chr3.3:80328749-80328768 | MS.gene049233:CDS | 50.0% | |
| TTCCCTGGCCAACATTTGGT+TGG | + | chr3.3:80330917-80330936 | None:intergenic | 50.0% | |
| ! | AGCTCGAGGTATTACAAGGC+CGG | - | chr3.3:80331060-80331079 | MS.gene049233:intron | 50.0% |
| ! | CCACTCAAGCTCGTCTCTTT+TGG | + | chr3.3:80330298-80330317 | None:intergenic | 50.0% |
| ! | TATGACTATGAGGTGTCCGG+TGG | + | chr3.3:80329402-80329421 | None:intergenic | 50.0% |
| ! | TTGAAGGCGTGTCTGATGTC+TGG | - | chr3.3:80329200-80329219 | MS.gene049233:intron | 50.0% |
| !! | CTGCATAGGGAAGGTGTTGA+TGG | - | chr3.3:80331665-80331684 | MS.gene049233:intron | 50.0% |
| !! | GCCTATACGGTTTTGTGCAG+TGG | + | chr3.3:80330817-80330836 | None:intergenic | 50.0% |
| !! | GGTTGGTCTGATGCAGTATC+TGG | + | chr3.3:80330900-80330919 | None:intergenic | 50.0% |
| AACTGCTCACCGCCATCTTG+GGG | + | chr3.3:80332128-80332147 | None:intergenic | 55.0% | |
| AGAGGCTTCAGGATGTGGAG+AGG | - | chr3.3:80330394-80330413 | MS.gene049233:CDS | 55.0% | |
| ATACAGGAAGGAGGGGTCCT+AGG | - | chr3.3:80328908-80328927 | MS.gene049233:CDS | 55.0% | |
| CAACTGCTCACCGCCATCTT+GGG | + | chr3.3:80332129-80332148 | None:intergenic | 55.0% | |
| CAATGCCTCGGCTTTCTCAC+TGG | + | chr3.3:80329915-80329934 | None:intergenic | 55.0% | |
| CAGTGAGAAAGCCGAGGCAT+TGG | - | chr3.3:80329913-80329932 | MS.gene049233:CDS | 55.0% | |
| CCGGGTAAAGGAAGCAGAGT+TGG | - | chr3.3:80331079-80331098 | MS.gene049233:intron | 55.0% | |
| CGAGGCTGCGTCAAATGAAG+AGG | - | chr3.3:80329721-80329740 | MS.gene049233:CDS | 55.0% | |
| GAGAGCTGCTCAAACTGAGG+CGG | - | chr3.3:80331211-80331230 | MS.gene049233:CDS | 55.0% | |
| GAGGCTTCAGGATGTGGAGA+GGG | - | chr3.3:80330395-80330414 | MS.gene049233:CDS | 55.0% | |
| GCAGCCTCGGAAATGACTTC+TGG | + | chr3.3:80329710-80329729 | None:intergenic | 55.0% | |
| GGTAAAGGAAGCGGAGTTGG+AGG | - | chr3.3:80331364-80331383 | MS.gene049233:intron | 55.0% | |
| TCAACTGCTCACCGCCATCT+TGG | + | chr3.3:80332130-80332149 | None:intergenic | 55.0% | |
| TCGGGTAAAGGAAGCGGAGT+TGG | - | chr3.3:80331361-80331380 | MS.gene049233:intron | 55.0% | |
| TCTGCAGAGGCTTCAGGATG+TGG | - | chr3.3:80330389-80330408 | MS.gene049233:CDS | 55.0% | |
| ! | GCTCGAGGTATTACAAGGCC+GGG | - | chr3.3:80331061-80331080 | MS.gene049233:intron | 55.0% |
| ACAACCCCAGCTCCCCAAGA+TGG | - | chr3.3:80332113-80332132 | MS.gene049233:intron | 60.0% | |
| AGGAAGGAGGGGTCCTAGGT+AGG | - | chr3.3:80328912-80328931 | MS.gene049233:CDS | 60.0% | |
| CGAGTGCCAAAAGCAGCTCG+AGG | - | chr3.3:80331046-80331065 | MS.gene049233:intron | 60.0% | |
| GAAGCACAAACACGGAGGCC+AGG | + | chr3.3:80329302-80329321 | None:intergenic | 60.0% | |
| ACCCCAGCTCCCCAAGATGG+CGG | - | chr3.3:80332116-80332135 | MS.gene049233:intron | 65.0% | |
| ACCGCCATCTTGGGGAGCTG+GGG | + | chr3.3:80332120-80332139 | None:intergenic | 65.0% | |
| CACCGCCATCTTGGGGAGCT+GGG | + | chr3.3:80332121-80332140 | None:intergenic | 65.0% | |
| TCACCGCCATCTTGGGGAGC+TGG | + | chr3.3:80332122-80332141 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 80328748 | 80332253 | 80328748 | ID=MS.gene049233 |
| chr3.3 | mRNA | 80328748 | 80332253 | 80328748 | ID=MS.gene049233.t1;Parent=MS.gene049233 |
| chr3.3 | exon | 80332137 | 80332253 | 80332137 | ID=MS.gene049233.t1.exon1;Parent=MS.gene049233.t1 |
| chr3.3 | CDS | 80332137 | 80332253 | 80332137 | ID=cds.MS.gene049233.t1;Parent=MS.gene049233.t1 |
| chr3.3 | exon | 80331144 | 80331321 | 80331144 | ID=MS.gene049233.t1.exon2;Parent=MS.gene049233.t1 |
| chr3.3 | CDS | 80331144 | 80331321 | 80331144 | ID=cds.MS.gene049233.t1;Parent=MS.gene049233.t1 |
| chr3.3 | exon | 80329295 | 80330907 | 80329295 | ID=MS.gene049233.t1.exon3;Parent=MS.gene049233.t1 |
| chr3.3 | CDS | 80329295 | 80330907 | 80329295 | ID=cds.MS.gene049233.t1;Parent=MS.gene049233.t1 |
| chr3.3 | exon | 80328748 | 80329032 | 80328748 | ID=MS.gene049233.t1.exon4;Parent=MS.gene049233.t1 |
| chr3.3 | CDS | 80328748 | 80329032 | 80328748 | ID=cds.MS.gene049233.t1;Parent=MS.gene049233.t1 |
| Gene Sequence |
| Protein sequence |
