Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64892.t1 | XP_003612372.1 | 97.9 | 425 | 6 | 1 | 1 | 425 | 1 | 422 | 1.50E-206 | 728.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64892.t1 | Q9SVG0 | 58.6 | 430 | 168 | 3 | 5 | 424 | 6 | 435 | 4.6e-132 | 472.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64892.t1 | G7K191 | 97.9 | 425 | 6 | 1 | 1 | 425 | 1 | 422 | 1.1e-206 | 728.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene64892 | MS.gene09785 | PPI |
| MS.gene64892 | MS.gene007486 | PPI |
| MS.gene64892 | MS.gene007485 | PPI |
| MS.gene64892 | MS.gene061932 | PPI |
| MS.gene64892 | MS.gene051911 | PPI |
| MS.gene64892 | MS.gene007487 | PPI |
| MS.gene64892 | MS.gene22482 | PPI |
| MS.gene64892 | MS.gene018518 | PPI |
| MS.gene64892 | MS.gene80637 | PPI |
| MS.gene64892 | MS.gene29579 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64892.t1 | MTR_5g024300 | 97.882 | 425 | 6 | 1 | 1 | 425 | 1 | 422 | 0.0 | 827 |
| MS.gene64892.t1 | MTR_8g073340 | 66.995 | 406 | 130 | 1 | 20 | 425 | 12 | 413 | 0.0 | 523 |
| MS.gene64892.t1 | MTR_7g107090 | 36.930 | 417 | 230 | 7 | 19 | 417 | 3 | 404 | 1.27e-74 | 239 |
| MS.gene64892.t1 | MTR_1g094620 | 23.702 | 443 | 290 | 15 | 4 | 421 | 117 | 536 | 2.30e-16 | 81.6 |
| MS.gene64892.t1 | MTR_7g010750 | 26.877 | 413 | 254 | 18 | 32 | 422 | 42 | 428 | 8.50e-16 | 79.3 |
| MS.gene64892.t1 | MTR_7g010790 | 26.389 | 432 | 264 | 20 | 18 | 422 | 25 | 429 | 2.74e-15 | 77.8 |
| MS.gene64892.t1 | MTR_1g094620 | 23.778 | 450 | 288 | 16 | 4 | 421 | 117 | 543 | 3.12e-15 | 78.2 |
| MS.gene64892.t1 | MTR_3g033730 | 26.049 | 453 | 256 | 19 | 10 | 422 | 16 | 429 | 1.34e-14 | 75.5 |
| MS.gene64892.t1 | MTR_8g467180 | 24.259 | 371 | 246 | 11 | 31 | 387 | 20 | 369 | 2.18e-14 | 74.7 |
| MS.gene64892.t1 | MTR_8g467190 | 24.110 | 365 | 246 | 11 | 35 | 387 | 23 | 368 | 5.92e-13 | 70.5 |
| MS.gene64892.t1 | MTR_8g465310 | 22.892 | 415 | 262 | 16 | 34 | 422 | 22 | 404 | 4.64e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64892.t1 | AT4G38250 | 65.197 | 431 | 140 | 3 | 4 | 424 | 5 | 435 | 0.0 | 552 |
| MS.gene64892.t1 | AT2G42005 | 65.926 | 405 | 132 | 2 | 18 | 420 | 10 | 410 | 0.0 | 536 |
| MS.gene64892.t1 | AT5G65990 | 66.504 | 409 | 131 | 2 | 17 | 425 | 25 | 427 | 5.81e-180 | 508 |
| MS.gene64892.t1 | AT3G11900 | 36.073 | 438 | 234 | 8 | 7 | 417 | 11 | 429 | 7.55e-73 | 235 |
| MS.gene64892.t1 | AT3G11900 | 36.073 | 438 | 234 | 8 | 7 | 417 | 11 | 429 | 7.55e-73 | 235 |
| MS.gene64892.t1 | AT5G15240 | 26.484 | 438 | 278 | 15 | 4 | 420 | 5 | 419 | 5.22e-21 | 95.1 |
| MS.gene64892.t1 | AT2G39130 | 23.934 | 422 | 281 | 12 | 19 | 421 | 145 | 545 | 3.73e-17 | 84.0 |
| MS.gene64892.t1 | AT2G39130 | 23.934 | 422 | 281 | 12 | 19 | 421 | 145 | 545 | 3.73e-17 | 84.0 |
| MS.gene64892.t1 | AT2G41190 | 23.881 | 402 | 277 | 10 | 32 | 421 | 148 | 532 | 5.34e-17 | 83.6 |
| MS.gene64892.t1 | AT3G54830 | 26.012 | 346 | 214 | 11 | 44 | 367 | 163 | 488 | 2.78e-14 | 75.1 |
| MS.gene64892.t1 | AT3G54830 | 26.012 | 346 | 214 | 11 | 44 | 367 | 163 | 488 | 2.78e-14 | 75.1 |
| MS.gene64892.t1 | AT2G39130 | 25.069 | 363 | 232 | 12 | 19 | 362 | 145 | 486 | 7.43e-14 | 73.6 |
| MS.gene64892.t1 | AT3G28960 | 26.442 | 416 | 252 | 15 | 31 | 421 | 16 | 402 | 8.41e-14 | 73.2 |
| MS.gene64892.t1 | AT3G28960 | 26.442 | 416 | 252 | 15 | 31 | 421 | 16 | 402 | 8.41e-14 | 73.2 |
| MS.gene64892.t1 | AT3G28960 | 26.442 | 416 | 252 | 15 | 31 | 421 | 16 | 402 | 8.41e-14 | 73.2 |
| MS.gene64892.t1 | AT3G28960 | 26.442 | 416 | 252 | 15 | 31 | 421 | 16 | 402 | 8.41e-14 | 73.2 |
| MS.gene64892.t1 | AT5G02180 | 25.891 | 421 | 266 | 12 | 20 | 420 | 150 | 544 | 3.00e-13 | 72.0 |
| MS.gene64892.t1 | AT5G02180 | 25.891 | 421 | 266 | 12 | 20 | 420 | 150 | 544 | 3.00e-13 | 72.0 |
| MS.gene64892.t1 | AT5G15240 | 25.656 | 343 | 219 | 11 | 98 | 420 | 7 | 333 | 1.23e-11 | 65.9 |
| MS.gene64892.t1 | AT2G41190 | 24.225 | 355 | 238 | 11 | 32 | 372 | 148 | 485 | 5.35e-11 | 64.7 |
| MS.gene64892.t1 | AT1G61270 | 21.002 | 419 | 281 | 15 | 19 | 403 | 25 | 427 | 5.98e-11 | 64.7 |
Find 96 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTTGTTGTTGCTGTTTA+TGG | 0.117334 | 5.3:-14139010 | MS.gene64892:CDS |
| CATGCAAAATAGACCAAATT+TGG | 0.163682 | 5.3:-14139590 | MS.gene64892:CDS |
| CGGCGAAAAGTTTGTATCTT+TGG | 0.171178 | 5.3:-14139744 | MS.gene64892:CDS |
| GGTGAGGTGGTTGTTGGTTT+TGG | 0.173510 | 5.3:-14139206 | MS.gene64892:CDS |
| CCCTTAAAAGCTTCCAAATT+TGG | 0.173765 | 5.3:+14139577 | None:intergenic |
| ACTAAAGATAAAGAGAAATT+TGG | 0.176282 | 5.3:-14139472 | MS.gene64892:CDS |
| AAATACTCAAAGGGGCTAAA+TGG | 0.209190 | 5.3:+14139674 | None:intergenic |
| TCTATATTATTTGGTGCTTT+TGG | 0.213007 | 5.3:-14139418 | MS.gene64892:CDS |
| GGTATGATTTCTATATTATT+TGG | 0.220969 | 5.3:-14139427 | MS.gene64892:CDS |
| AATCAAATCTTTCGGCGATT+TGG | 0.225599 | 5.3:-14139932 | MS.gene64892:CDS |
| GATATTATTACTAATAATTT+AGG | 0.226982 | 5.3:-14139358 | MS.gene64892:CDS |
| GGCGAAAAGTTTGTATCTTT+GGG | 0.249310 | 5.3:-14139743 | MS.gene64892:CDS |
| GCCGTTAAACCGATGAAAAT+AGG | 0.259033 | 5.3:+14139763 | None:intergenic |
| ATAGGTGTTATGGTTCAATT+AGG | 0.262950 | 5.3:-14139325 | MS.gene64892:CDS |
| ATCGCCGAAAGATTTGATTT+TGG | 0.265782 | 5.3:+14139936 | None:intergenic |
| ATCAAATCTTTCGGCGATTT+GGG | 0.268793 | 5.3:-14139931 | MS.gene64892:CDS |
| ACCTGCTTTGTTTCATTGTA+TGG | 0.285431 | 5.3:-14139092 | MS.gene64892:CDS |
| GGTTTCAGATGGGGCCATTA+TGG | 0.292416 | 5.3:-14139038 | MS.gene64892:CDS |
| GGTGAGTTTGGTGGCACTTT+TGG | 0.301518 | 5.3:-14139182 | MS.gene64892:CDS |
| CGGTGATGGATTCGAGTTTC+CGG | 0.304307 | 5.3:+14139965 | None:intergenic |
| AGTAGTGTTTGTGTTGTTCT+TGG | 0.305093 | 5.3:-14139124 | MS.gene64892:CDS |
| ATGATTGTGCTTTCACAAGC+TGG | 0.315652 | 5.3:-14139865 | MS.gene64892:CDS |
| ATCGTCGGCGCCGGCGTTCT+CGG | 0.337782 | 5.3:-14140093 | MS.gene64892:CDS |
| GTGTCTTCGCGTGGGTAGGG+TGG | 0.342661 | 5.3:+14140183 | None:intergenic |
| CTAAAGATAAAGAGAAATTT+GGG | 0.358199 | 5.3:-14139471 | MS.gene64892:CDS |
| TTCTCCAAAATCAAATCTTT+CGG | 0.360516 | 5.3:-14139940 | MS.gene64892:CDS |
| TTTGAATTGGGAGGAGAGGG+GGG | 0.368849 | 5.3:+14140140 | None:intergenic |
| AAGTTGAAGAAATGAAAATA+AGG | 0.383503 | 5.3:+14139827 | None:intergenic |
| CTAGGTATTGTTTGTGGGTG+AGG | 0.391723 | 5.3:-14139222 | MS.gene64892:CDS |
| TTCTGCTAAGAGTGTTGTTA+TGG | 0.395374 | 5.3:-14139632 | MS.gene64892:CDS |
| TTTGTGGGTGAGGTGGTTGT+TGG | 0.396163 | 5.3:-14139212 | MS.gene64892:CDS |
| GATGATGAATCCTGTTTATG+AGG | 0.399583 | 5.3:-14139269 | MS.gene64892:CDS |
| TTCACCATTTGTGGCCCATT+AGG | 0.399764 | 5.3:-14139907 | MS.gene64892:CDS |
| GAATTCAACCCTAATTGAAA+TGG | 0.405419 | 5.3:+14139712 | None:intergenic |
| GATTTGGGTTTCACCATTTG+TGG | 0.407357 | 5.3:-14139916 | MS.gene64892:CDS |
| GTGATTCTAGGTATTGTTTG+TGG | 0.411186 | 5.3:-14139228 | MS.gene64892:CDS |
| AATTTAGGTCAAGGTGTGAT+AGG | 0.415141 | 5.3:-14139343 | MS.gene64892:CDS |
| CCGTTAAACCGATGAAAATA+GGG | 0.418409 | 5.3:+14139764 | None:intergenic |
| AATACTCAAAGGGGCTAAAT+GGG | 0.422180 | 5.3:+14139675 | None:intergenic |
| TTCAGAGATTCTTTCTCCTA+AGG | 0.423873 | 5.3:-14138972 | MS.gene64892:CDS |
| TGGAGATGCTTGGTTTCAGA+TGG | 0.426094 | 5.3:-14139049 | MS.gene64892:CDS |
| TGATTCTAGGTATTGTTTGT+GGG | 0.427448 | 5.3:-14139227 | MS.gene64892:CDS |
| TCAAGGTGTGATAGGTGTTA+TGG | 0.428573 | 5.3:-14139335 | MS.gene64892:CDS |
| GAGGTAGCCGGTGCGTTTGA+AGG | 0.444851 | 5.3:+14140059 | None:intergenic |
| GGGGTGTCTTCGCGTGGGTA+GGG | 0.447145 | 5.3:+14140180 | None:intergenic |
| AGAGTTGGGTTGGAGATGCT+TGG | 0.457507 | 5.3:-14139059 | MS.gene64892:CDS |
| GGAGATGCTTGGTTTCAGAT+GGG | 0.463040 | 5.3:-14139048 | MS.gene64892:CDS |
| TGATTGTGCTTTCACAAGCT+GGG | 0.465440 | 5.3:-14139864 | MS.gene64892:CDS |
| TTCCAAATCAATCAAGCCTT+AGG | 0.468756 | 5.3:+14138956 | None:intergenic |
| TTGAATTGGGAGGAGAGGGG+GGG | 0.471686 | 5.3:+14140141 | None:intergenic |
| TGTCTTCGCGTGGGTAGGGT+GGG | 0.472433 | 5.3:+14140184 | None:intergenic |
| TAGGTGTTATGGTTCAATTA+GGG | 0.480288 | 5.3:-14139324 | MS.gene64892:CDS |
| AGCTTGTGAAAGCACAATCA+TGG | 0.488957 | 5.3:+14139867 | None:intergenic |
| TTCATCGCCATCGTCGGCGC+CGG | 0.491063 | 5.3:-14140102 | MS.gene64892:CDS |
| GATGAGACCGGTGAGGTAGC+CGG | 0.501029 | 5.3:+14140047 | None:intergenic |
| ATTACTAATAATTTAGGTCA+AGG | 0.502446 | 5.3:-14139352 | MS.gene64892:CDS |
| GGTTTCAGCGGTGGAGTCAC+CGG | 0.502765 | 5.3:+14139789 | None:intergenic |
| ACGGCCTAATGGGCCACAAA+TGG | 0.508734 | 5.3:+14139903 | None:intergenic |
| CCGGTGCGTTTGAAGGAGTA+AGG | 0.510223 | 5.3:+14140066 | None:intergenic |
| TGGGTAGGGTGGGAGTGAGT+AGG | 0.521131 | 5.3:+14140194 | None:intergenic |
| GAGATGCTTGGTTTCAGATG+GGG | 0.523607 | 5.3:-14139047 | MS.gene64892:CDS |
| TGAGGTAAGCGATGGTGAAG+AGG | 0.524702 | 5.3:+14140022 | None:intergenic |
| GGCGATGAAGATGTTGGCGC+AGG | 0.529083 | 5.3:+14140116 | None:intergenic |
| AACATGGTGTTCAAAGAAGC+AGG | 0.533056 | 5.3:-14140225 | MS.gene64892:CDS |
| AACATCTTCATCGCCATCGT+CGG | 0.542040 | 5.3:-14140108 | MS.gene64892:CDS |
| AAACGCACCGGCTACCTCAC+CGG | 0.545253 | 5.3:-14140054 | MS.gene64892:CDS |
| TAAACAGGATTCATCATCAA+AGG | 0.546520 | 5.3:+14139274 | None:intergenic |
| AATCTCTGAAACAGATGTAT+CGG | 0.546936 | 5.3:+14138985 | None:intergenic |
| GGTATTGTTTGTGGGTGAGG+TGG | 0.548580 | 5.3:-14139219 | MS.gene64892:CDS |
| TCCTCCTCGTCAACACTCGC+CGG | 0.555101 | 5.3:-14139984 | MS.gene64892:CDS |
| ACTTTATCATTTCTCACCGC+CGG | 0.560571 | 5.3:-14139808 | MS.gene64892:CDS |
| GGGGTGAGTTAGTAATAAGG+GGG | 0.561280 | 5.3:+14140160 | None:intergenic |
| TCTTTAGTCTCACTTTCCAA+AGG | 0.564288 | 5.3:+14139487 | None:intergenic |
| CCTTACTCCTTCAAACGCAC+CGG | 0.571117 | 5.3:-14140066 | MS.gene64892:CDS |
| AGATAAAGAGAAATTTGGGA+GGG | 0.580185 | 5.3:-14139467 | MS.gene64892:CDS |
| GAGGAGGAGCATGCAGTGGT+AGG | 0.580282 | 5.3:+14139999 | None:intergenic |
| ACCATACAATGAAACAAAGC+AGG | 0.581653 | 5.3:+14139091 | None:intergenic |
| GCGAAAAGTTTGTATCTTTG+GGG | 0.582000 | 5.3:-14139742 | MS.gene64892:CDS |
| AATAGGGACGGTTTCAGCGG+TGG | 0.583571 | 5.3:+14139780 | None:intergenic |
| GAGAACGCCGGCGCCGACGA+TGG | 0.586591 | 5.3:+14140095 | None:intergenic |
| GACGATGGCGATGAAGATGT+TGG | 0.595120 | 5.3:+14140110 | None:intergenic |
| GAAAATAGGGACGGTTTCAG+CGG | 0.597712 | 5.3:+14139777 | None:intergenic |
| CGGAAACTCGAATCCATCAC+CGG | 0.599755 | 5.3:-14139964 | MS.gene64892:CDS |
| GGAGCATGCAGTGGTAGGTG+AGG | 0.612235 | 5.3:+14140004 | None:intergenic |
| GGGTGAGTTAGTAATAAGGG+GGG | 0.618825 | 5.3:+14140161 | None:intergenic |
| AAGCACAATCATGGAGTCAA+CGG | 0.622860 | 5.3:+14139876 | None:intergenic |
| AAGATAAAGAGAAATTTGGG+AGG | 0.627925 | 5.3:-14139468 | MS.gene64892:CDS |
| GGTGAAGAGGTTGATGAGAC+CGG | 0.628720 | 5.3:+14140035 | None:intergenic |
| GTAAGGAAGACCGAGAACGC+CGG | 0.630022 | 5.3:+14140083 | None:intergenic |
| TCCGGCGAGTGTTGACGAGG+AGG | 0.631211 | 5.3:+14139983 | None:intergenic |
| GTTTCCGGCGAGTGTTGACG+AGG | 0.647193 | 5.3:+14139980 | None:intergenic |
| TTCAGCGGTGGAGTCACCGG+CGG | 0.661065 | 5.3:+14139792 | None:intergenic |
| TAAACCGATGAAAATAGGGA+CGG | 0.664104 | 5.3:+14139768 | None:intergenic |
| TGACGAGGAGGAGCATGCAG+TGG | 0.678520 | 5.3:+14139995 | None:intergenic |
| GTGGTAGGTGAGGTAAGCGA+TGG | 0.733327 | 5.3:+14140014 | None:intergenic |
| AGAGGTTGATGAGACCGGTG+AGG | 0.739124 | 5.3:+14140040 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATATTATTACTAATAATTT+AGG | - | chr5.3:14139831-14139850 | MS.gene64892:CDS | 10.0% |
| !! | AAGTTGAAGAAATGAAAATA+AGG | + | chr5.3:14139365-14139384 | None:intergenic | 20.0% |
| !! | ACTAAAGATAAAGAGAAATT+TGG | - | chr5.3:14139717-14139736 | MS.gene64892:CDS | 20.0% |
| !! | ATTACTAATAATTTAGGTCA+AGG | - | chr5.3:14139837-14139856 | MS.gene64892:CDS | 20.0% |
| !! | CTAAAGATAAAGAGAAATTT+GGG | - | chr5.3:14139718-14139737 | MS.gene64892:CDS | 20.0% |
| !! | GGTATGATTTCTATATTATT+TGG | - | chr5.3:14139762-14139781 | MS.gene64892:CDS | 20.0% |
| ! | AACAAATCCAAAAACCATAA+TGG | + | chr5.3:14140168-14140187 | None:intergenic | 25.0% |
| ! | GACAAAAAATCAGCAAAATT+AGG | + | chr5.3:14140035-14140054 | None:intergenic | 25.0% |
| ! | TTCTCCAAAATCAAATCTTT+CGG | - | chr5.3:14139249-14139268 | MS.gene64892:CDS | 25.0% |
| !! | GTTTCATTGTATGGTTTTTA+AGG | - | chr5.3:14140106-14140125 | MS.gene64892:CDS | 25.0% |
| !!! | GTTGTTTTCCATTTCAATTA+GGG | - | chr5.3:14139469-14139488 | MS.gene64892:CDS | 25.0% |
| !!! | TCTATATTATTTGGTGCTTT+TGG | - | chr5.3:14139771-14139790 | MS.gene64892:CDS | 25.0% |
| AAGATAAAGAGAAATTTGGG+AGG | - | chr5.3:14139721-14139740 | MS.gene64892:CDS | 30.0% | |
| ACATCAGCAAAAATACTCAA+AGG | + | chr5.3:14139528-14139547 | None:intergenic | 30.0% | |
| AGATAAAGAGAAATTTGGGA+GGG | - | chr5.3:14139722-14139741 | MS.gene64892:CDS | 30.0% | |
| ATCAGCAAAAATACTCAAAG+GGG | + | chr5.3:14139526-14139545 | None:intergenic | 30.0% | |
| CATCAGCAAAAATACTCAAA+GGG | + | chr5.3:14139527-14139546 | None:intergenic | 30.0% | |
| CATGCAAAATAGACCAAATT+TGG | - | chr5.3:14139599-14139618 | MS.gene64892:CDS | 30.0% | |
| GAATTCAACCCTAATTGAAA+TGG | + | chr5.3:14139480-14139499 | None:intergenic | 30.0% | |
| TAAACAGGATTCATCATCAA+AGG | + | chr5.3:14139918-14139937 | None:intergenic | 30.0% | |
| ! | ACCAAATTTGGAAGCTTTTA+AGG | - | chr5.3:14139611-14139630 | MS.gene64892:CDS | 30.0% |
| ! | ATAGGTGTTATGGTTCAATT+AGG | - | chr5.3:14139864-14139883 | MS.gene64892:CDS | 30.0% |
| ! | CCAAATTTGGAAGCTTTTAA+GGG | - | chr5.3:14139612-14139631 | MS.gene64892:CDS | 30.0% |
| ! | TAGGTGTTATGGTTCAATTA+GGG | - | chr5.3:14139865-14139884 | MS.gene64892:CDS | 30.0% |
| ! | TGATTCTAGGTATTGTTTGT+GGG | - | chr5.3:14139962-14139981 | MS.gene64892:CDS | 30.0% |
| !! | AATCTCTGAAACAGATGTAT+CGG | + | chr5.3:14140207-14140226 | None:intergenic | 30.0% |
| !! | AGATTTGATTTTGGAGAAAC+CGG | + | chr5.3:14139247-14139266 | None:intergenic | 30.0% |
| !! | ATGGTTTTTAAGGAAGAGTT+GGG | - | chr5.3:14140116-14140135 | MS.gene64892:CDS | 30.0% |
| !! | GGTTGTTTTCCATTTCAATT+AGG | - | chr5.3:14139468-14139487 | MS.gene64892:CDS | 30.0% |
| !! | GTTTTAGGCTATTTTGCTTT+TGG | - | chr5.3:14139795-14139814 | MS.gene64892:CDS | 30.0% |
| !! | TATGGTTTTTAAGGAAGAGT+TGG | - | chr5.3:14140115-14140134 | MS.gene64892:CDS | 30.0% |
| !! | TTTATGAGGTTTTTGAGAGA+AGG | - | chr5.3:14139934-14139953 | MS.gene64892:CDS | 30.0% |
| !!! | CTGATTTTTTGTCACTTGTT+GGG | - | chr5.3:14140042-14140061 | MS.gene64892:CDS | 30.0% |
| !!! | GGTGTTTTTTTCTATGGTAT+TGG | - | chr5.3:14139639-14139658 | MS.gene64892:CDS | 30.0% |
| !!! | GGTTTTGGTGTTTTTTTCTA+TGG | - | chr5.3:14139633-14139652 | MS.gene64892:CDS | 30.0% |
| !!! | TTGCTGTTTATGCTTTTGAA+GGG | - | chr5.3:14139664-14139683 | MS.gene64892:CDS | 30.0% |
| AAATACTCAAAGGGGCTAAA+TGG | + | chr5.3:14139518-14139537 | None:intergenic | 35.0% | |
| AATACTCAAAGGGGCTAAAT+GGG | + | chr5.3:14139517-14139536 | None:intergenic | 35.0% | |
| AATCAAATCTTTCGGCGATT+TGG | - | chr5.3:14139257-14139276 | MS.gene64892:CDS | 35.0% | |
| AATTTAGGTCAAGGTGTGAT+AGG | - | chr5.3:14139846-14139865 | MS.gene64892:CDS | 35.0% | |
| ACCATACAATGAAACAAAGC+AGG | + | chr5.3:14140101-14140120 | None:intergenic | 35.0% | |
| ATCAAATCTTTCGGCGATTT+GGG | - | chr5.3:14139258-14139277 | MS.gene64892:CDS | 35.0% | |
| CCCTTAAAAGCTTCCAAATT+TGG | + | chr5.3:14139615-14139634 | None:intergenic | 35.0% | |
| CCGTTAAACCGATGAAAATA+GGG | + | chr5.3:14139428-14139447 | None:intergenic | 35.0% | |
| CTCTCAAAAACCTCATAAAC+AGG | + | chr5.3:14139933-14139952 | None:intergenic | 35.0% | |
| GATGATGAATCCTGTTTATG+AGG | - | chr5.3:14139920-14139939 | MS.gene64892:CDS | 35.0% | |
| GCGAAAAGTTTGTATCTTTG+GGG | - | chr5.3:14139447-14139466 | MS.gene64892:CDS | 35.0% | |
| GGCGAAAAGTTTGTATCTTT+GGG | - | chr5.3:14139446-14139465 | MS.gene64892:CDS | 35.0% | |
| TAAACCGATGAAAATAGGGA+CGG | + | chr5.3:14139424-14139443 | None:intergenic | 35.0% | |
| TCTTTAGTCTCACTTTCCAA+AGG | + | chr5.3:14139705-14139724 | None:intergenic | 35.0% | |
| TTCAGAGATTCTTTCTCCTA+AGG | - | chr5.3:14140217-14140236 | MS.gene64892:CDS | 35.0% | |
| ! | AGAAATTTGGGAGGGTTTTA+GGG | - | chr5.3:14139730-14139749 | MS.gene64892:CDS | 35.0% |
| ! | AGTAGTGTTTGTGTTGTTCT+TGG | - | chr5.3:14140065-14140084 | MS.gene64892:CDS | 35.0% |
| ! | GTGATTCTAGGTATTGTTTG+TGG | - | chr5.3:14139961-14139980 | MS.gene64892:CDS | 35.0% |
| ! | TGCTTTTGGTGAAGAAACTA+AGG | - | chr5.3:14139809-14139828 | MS.gene64892:CDS | 35.0% |
| !! | ACCTGCTTTGTTTCATTGTA+TGG | - | chr5.3:14140097-14140116 | MS.gene64892:CDS | 35.0% |
| !! | AGAGAAGGTTTTGTGATTCT+AGG | - | chr5.3:14139949-14139968 | MS.gene64892:CDS | 35.0% |
| !! | ATCGCCGAAAGATTTGATTT+TGG | + | chr5.3:14139256-14139275 | None:intergenic | 35.0% |
| !! | GGATTTGTTGTTGCTGTTTA+TGG | - | chr5.3:14140179-14140198 | MS.gene64892:CDS | 35.0% |
| !! | GTTTATGCTTTTGAAGGGAT+TGG | - | chr5.3:14139669-14139688 | MS.gene64892:CDS | 35.0% |
| !! | TTCTGCTAAGAGTGTTGTTA+TGG | - | chr5.3:14139557-14139576 | MS.gene64892:CDS | 35.0% |
| !! | TTGGAAGCTTTTAAGGGTTT+TGG | - | chr5.3:14139618-14139637 | MS.gene64892:CDS | 35.0% |
| !! | TTTTTAAGGAAGAGTTGGGT+TGG | - | chr5.3:14140120-14140139 | MS.gene64892:CDS | 35.0% |
| !!! | CCCTATTTTCATCGGTTTAA+CGG | - | chr5.3:14139425-14139444 | MS.gene64892:CDS | 35.0% |
| !!! | GCTGATTTTTTGTCACTTGT+TGG | - | chr5.3:14140041-14140060 | MS.gene64892:CDS | 35.0% |
| !!! | GTTGCTGTTTATGCTTTTGA+AGG | - | chr5.3:14139663-14139682 | MS.gene64892:CDS | 35.0% |
| !!! | TTTGGTGCTTTTGGTGTTTT+AGG | - | chr5.3:14139780-14139799 | MS.gene64892:CDS | 35.0% |
| AAGCACAATCATGGAGTCAA+CGG | + | chr5.3:14139316-14139335 | None:intergenic | 40.0% | |
| ACTTTATCATTTCTCACCGC+CGG | - | chr5.3:14139381-14139400 | MS.gene64892:CDS | 40.0% | |
| ATGATTGTGCTTTCACAAGC+TGG | - | chr5.3:14139324-14139343 | MS.gene64892:CDS | 40.0% | |
| CGGCGAAAAGTTTGTATCTT+TGG | - | chr5.3:14139445-14139464 | MS.gene64892:CDS | 40.0% | |
| GCCGTTAAACCGATGAAAAT+AGG | + | chr5.3:14139429-14139448 | None:intergenic | 40.0% | |
| TCAAGGTGTGATAGGTGTTA+TGG | - | chr5.3:14139854-14139873 | MS.gene64892:CDS | 40.0% | |
| TCATGGAGTCAACGGAAAAA+CGG | + | chr5.3:14139308-14139327 | None:intergenic | 40.0% | |
| TGATTGTGCTTTCACAAGCT+GGG | - | chr5.3:14139325-14139344 | MS.gene64892:CDS | 40.0% | |
| ! | AGCTTGTGAAAGCACAATCA+TGG | + | chr5.3:14139325-14139344 | None:intergenic | 40.0% |
| ! | GAAACCGTCCCTATTTTCAT+CGG | - | chr5.3:14139417-14139436 | MS.gene64892:CDS | 40.0% |
| ! | GAGAAATTTGGGAGGGTTTT+AGG | - | chr5.3:14139729-14139748 | MS.gene64892:CDS | 40.0% |
| ! | GATTTGGGTTTCACCATTTG+TGG | - | chr5.3:14139273-14139292 | MS.gene64892:CDS | 40.0% |
| !! | GATTGGAATGGTTTTGCCTT+TGG | - | chr5.3:14139686-14139705 | MS.gene64892:CDS | 40.0% |
| !! | TGCTTTTGAAGGGATTGGAA+TGG | - | chr5.3:14139674-14139693 | MS.gene64892:CDS | 40.0% |
| AACATCTTCATCGCCATCGT+CGG | - | chr5.3:14139081-14139100 | MS.gene64892:CDS | 45.0% | |
| CAACGGAAAAACGGCCTAAT+GGG | + | chr5.3:14139299-14139318 | None:intergenic | 45.0% | |
| GAAAATAGGGACGGTTTCAG+CGG | + | chr5.3:14139415-14139434 | None:intergenic | 45.0% | |
| GAGATGCTTGGTTTCAGATG+GGG | - | chr5.3:14140142-14140161 | MS.gene64892:CDS | 45.0% | |
| GGAGATGCTTGGTTTCAGAT+GGG | - | chr5.3:14140141-14140160 | MS.gene64892:CDS | 45.0% | |
| GGGGGGTGAGTTAGTAATAA+GGG | + | chr5.3:14139034-14139053 | None:intergenic | 45.0% | |
| GGGGGTGAGTTAGTAATAAG+GGG | + | chr5.3:14139033-14139052 | None:intergenic | 45.0% | |
| GGGGTGAGTTAGTAATAAGG+GGG | + | chr5.3:14139032-14139051 | None:intergenic | 45.0% | |
| GGGTGAGTTAGTAATAAGGG+GGG | + | chr5.3:14139031-14139050 | None:intergenic | 45.0% | |
| TCAACGGAAAAACGGCCTAA+TGG | + | chr5.3:14139300-14139319 | None:intergenic | 45.0% | |
| TGGAGATGCTTGGTTTCAGA+TGG | - | chr5.3:14140140-14140159 | MS.gene64892:CDS | 45.0% | |
| TTCACCATTTGTGGCCCATT+AGG | - | chr5.3:14139282-14139301 | MS.gene64892:CDS | 45.0% | |
| ! | CTAGGTATTGTTTGTGGGTG+AGG | - | chr5.3:14139967-14139986 | MS.gene64892:CDS | 45.0% |
| ! | GATGGGGCCATTATGGTTTT+TGG | - | chr5.3:14140158-14140177 | MS.gene64892:CDS | 45.0% |
| ! | TTTTGAATTGGGAGGAGAGG+GGG | + | chr5.3:14139053-14139072 | None:intergenic | 45.0% |
| !! | GATTTTGGAGAAACCGGTGA+TGG | + | chr5.3:14139241-14139260 | None:intergenic | 45.0% |
| !! | GTTTTGAATTGGGAGGAGAG+GGG | + | chr5.3:14139054-14139073 | None:intergenic | 45.0% |
| !!! | AGGGTTTTAGGGTTAGGGAT+GGG | - | chr5.3:14139741-14139760 | MS.gene64892:CDS | 45.0% |
| !!! | AGGTTTTGAATTGGGAGGAG+AGG | + | chr5.3:14139056-14139075 | None:intergenic | 45.0% |
| !!! | GGTTTTGAATTGGGAGGAGA+GGG | + | chr5.3:14139055-14139074 | None:intergenic | 45.0% |
| !!! | GTTGGCGCAGGTTTTGAATT+GGG | + | chr5.3:14139064-14139083 | None:intergenic | 45.0% |
| !!! | GTTGGTTTTGGTGGTGAGTT+TGG | - | chr5.3:14139995-14140014 | MS.gene64892:CDS | 45.0% |
| !!! | TGTTGGCGCAGGTTTTGAAT+TGG | + | chr5.3:14139065-14139084 | None:intergenic | 45.0% |
| !!! | TTGGGAGGGTTTTAGGGTTA+GGG | - | chr5.3:14139736-14139755 | MS.gene64892:CDS | 45.0% |
| !!! | TTTGGGAGGGTTTTAGGGTT+AGG | - | chr5.3:14139735-14139754 | MS.gene64892:CDS | 45.0% |
| CCTTACTCCTTCAAACGCAC+CGG | - | chr5.3:14139123-14139142 | MS.gene64892:CDS | 50.0% | |
| CGGAAACTCGAATCCATCAC+CGG | - | chr5.3:14139225-14139244 | MS.gene64892:CDS | 50.0% | |
| GACGATGGCGATGAAGATGT+TGG | + | chr5.3:14139082-14139101 | None:intergenic | 50.0% | |
| GGGGGGGTGAGTTAGTAATA+AGG | + | chr5.3:14139035-14139054 | None:intergenic | 50.0% | |
| GGTATTGTTTGTGGGTGAGG+TGG | - | chr5.3:14139970-14139989 | MS.gene64892:CDS | 50.0% | |
| GGTTTCAGATGGGGCCATTA+TGG | - | chr5.3:14140151-14140170 | MS.gene64892:CDS | 50.0% | |
| TGAGGTAAGCGATGGTGAAG+AGG | + | chr5.3:14139170-14139189 | None:intergenic | 50.0% | |
| TTTGAATTGGGAGGAGAGGG+GGG | + | chr5.3:14139052-14139071 | None:intergenic | 50.0% | |
| TTTGTGGGTGAGGTGGTTGT+TGG | - | chr5.3:14139977-14139996 | MS.gene64892:CDS | 50.0% | |
| !! | AGAGTTGGGTTGGAGATGCT+TGG | - | chr5.3:14140130-14140149 | MS.gene64892:CDS | 50.0% |
| !! | CGGTGATGGATTCGAGTTTC+CGG | + | chr5.3:14139227-14139246 | None:intergenic | 50.0% |
| !! | GGTGAAGAGGTTGATGAGAC+CGG | + | chr5.3:14139157-14139176 | None:intergenic | 50.0% |
| !! | GGTGAGTTTGGTGGCACTTT+TGG | - | chr5.3:14140007-14140026 | MS.gene64892:CDS | 50.0% |
| !!! | GAGGGTTTTAGGGTTAGGGA+TGG | - | chr5.3:14139740-14139759 | MS.gene64892:CDS | 50.0% |
| !!! | GAGGTGGTTGTTGGTTTTGG+TGG | - | chr5.3:14139986-14140005 | MS.gene64892:CDS | 50.0% |
| !!! | GGTGAGGTGGTTGTTGGTTT+TGG | - | chr5.3:14139983-14140002 | MS.gene64892:CDS | 50.0% |
| !!! | GGTTTTGGTGGTGAGTTTGG+TGG | - | chr5.3:14139998-14140017 | MS.gene64892:CDS | 50.0% |
| AATAGGGACGGTTTCAGCGG+TGG | + | chr5.3:14139412-14139431 | None:intergenic | 55.0% | |
| CCGGTGCGTTTGAAGGAGTA+AGG | + | chr5.3:14139126-14139145 | None:intergenic | 55.0% | |
| GTAAGGAAGACCGAGAACGC+CGG | + | chr5.3:14139109-14139128 | None:intergenic | 55.0% | |
| GTGGTAGGTGAGGTAAGCGA+TGG | + | chr5.3:14139178-14139197 | None:intergenic | 55.0% | |
| TTGAATTGGGAGGAGAGGGG+GGG | + | chr5.3:14139051-14139070 | None:intergenic | 55.0% | |
| ! | ACGGCCTAATGGGCCACAAA+TGG | + | chr5.3:14139289-14139308 | None:intergenic | 55.0% |
| !! | AGAGGTTGATGAGACCGGTG+AGG | + | chr5.3:14139152-14139171 | None:intergenic | 55.0% |
| !!! | GGCGCAGGTTTTGAATTGGG+AGG | + | chr5.3:14139061-14139080 | None:intergenic | 55.0% |
| GAGGTAGCCGGTGCGTTTGA+AGG | + | chr5.3:14139133-14139152 | None:intergenic | 60.0% | |
| GATGAGACCGGTGAGGTAGC+CGG | + | chr5.3:14139145-14139164 | None:intergenic | 60.0% | |
| GGAGCATGCAGTGGTAGGTG+AGG | + | chr5.3:14139188-14139207 | None:intergenic | 60.0% | |
| GGCGATGAAGATGTTGGCGC+AGG | + | chr5.3:14139076-14139095 | None:intergenic | 60.0% | |
| GGTTTCAGCGGTGGAGTCAC+CGG | + | chr5.3:14139403-14139422 | None:intergenic | 60.0% | |
| TCCTCCTCGTCAACACTCGC+CGG | - | chr5.3:14139205-14139224 | MS.gene64892:CDS | 60.0% | |
| TGGGTAGGGTGGGAGTGAGT+AGG | + | chr5.3:14138998-14139017 | None:intergenic | 60.0% | |
| TGTCTTCGCGTGGGTAGGGT+GGG | + | chr5.3:14139008-14139027 | None:intergenic | 60.0% | |
| ! | GAGGAGGAGCATGCAGTGGT+AGG | + | chr5.3:14139193-14139212 | None:intergenic | 60.0% |
| ! | TGACGAGGAGGAGCATGCAG+TGG | + | chr5.3:14139197-14139216 | None:intergenic | 60.0% |
| !! | AAACGCACCGGCTACCTCAC+CGG | - | chr5.3:14139135-14139154 | MS.gene64892:CDS | 60.0% |
| !! | ATAAGGGGGGTGTCTTCGCG+TGG | + | chr5.3:14139018-14139037 | None:intergenic | 60.0% |
| !! | GTTTCCGGCGAGTGTTGACG+AGG | + | chr5.3:14139212-14139231 | None:intergenic | 60.0% |
| !! | TAAGGGGGGTGTCTTCGCGT+GGG | + | chr5.3:14139017-14139036 | None:intergenic | 60.0% |
| GTGTCTTCGCGTGGGTAGGG+TGG | + | chr5.3:14139009-14139028 | None:intergenic | 65.0% | |
| TTCAGCGGTGGAGTCACCGG+CGG | + | chr5.3:14139400-14139419 | None:intergenic | 65.0% | |
| TTCATCGCCATCGTCGGCGC+CGG | - | chr5.3:14139087-14139106 | MS.gene64892:CDS | 65.0% | |
| ! | GGGGTGTCTTCGCGTGGGTA+GGG | + | chr5.3:14139012-14139031 | None:intergenic | 65.0% |
| !! | TCCGGCGAGTGTTGACGAGG+AGG | + | chr5.3:14139209-14139228 | None:intergenic | 65.0% |
| !! | ATCGTCGGCGCCGGCGTTCT+CGG | - | chr5.3:14139096-14139115 | MS.gene64892:CDS | 70.0% |
| !! | GGGGGTGTCTTCGCGTGGGT+AGG | + | chr5.3:14139013-14139032 | None:intergenic | 70.0% |
| !! | GAGAACGCCGGCGCCGACGA+TGG | + | chr5.3:14139097-14139116 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 14138967 | 14140244 | 14138967 | ID=MS.gene64892 |
| chr5.3 | mRNA | 14138967 | 14140244 | 14138967 | ID=MS.gene64892.t1;Parent=MS.gene64892 |
| chr5.3 | exon | 14138967 | 14140244 | 14138967 | ID=MS.gene64892.t1.exon1;Parent=MS.gene64892.t1 |
| chr5.3 | CDS | 14138967 | 14140244 | 14138967 | ID=cds.MS.gene64892.t1;Parent=MS.gene64892.t1 |
| Gene Sequence |
| Protein sequence |
