AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80637

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80637.t1 MTR_5g081630 98.433 383 6 0 92 474 1 383 0.0 765
MS.gene80637.t1 MTR_3g069960 77.465 426 96 0 49 474 11 436 0.0 663
MS.gene80637.t1 MTR_3g069960 76.986 365 84 0 110 474 19 383 0.0 590
MS.gene80637.t1 MTR_3g069960 79.344 305 63 0 49 353 11 315 7.09e-171 484
MS.gene80637.t1 MTR_4g104510 42.824 425 241 2 51 474 27 450 1.03e-119 358
MS.gene80637.t1 MTR_4g104510 43.294 425 237 4 51 474 27 448 1.18e-118 355
MS.gene80637.t1 MTR_1g070470 31.519 441 287 8 46 474 3 440 8.07e-57 195
MS.gene80637.t1 MTR_1g492640 32.553 427 267 9 63 473 59 480 2.43e-52 184
MS.gene80637.t1 MTR_4g055610 30.044 456 292 11 38 474 15 462 9.71e-47 168
MS.gene80637.t1 MTR_8g099320 28.341 434 271 11 64 471 28 447 5.69e-42 155
MS.gene80637.t1 MTR_1g492640 31.728 353 222 7 133 473 3 348 2.43e-39 145
MS.gene80637.t1 MTR_2g101920 27.991 468 313 16 14 468 1 457 1.99e-34 134
MS.gene80637.t1 MTR_1g492640 32.765 293 183 6 63 343 59 349 1.47e-33 130
MS.gene80637.t1 MTR_1g492640 32.765 293 183 6 63 343 41 331 1.94e-33 130
MS.gene80637.t1 MTR_5g054730 27.354 446 300 13 36 471 7 438 3.42e-29 119
MS.gene80637.t1 MTR_4g103890 26.980 404 275 10 77 468 24 419 3.30e-28 116
MS.gene80637.t1 MTR_6g022790 25.495 455 310 13 34 472 14 455 3.70e-28 116
MS.gene80637.t1 MTR_6g023065 26.593 455 297 15 33 472 31 463 1.78e-27 115
MS.gene80637.t1 MTR_8g094290 27.097 465 289 16 48 471 16 471 4.84e-27 114
MS.gene80637.t1 MTR_1g105980 27.097 465 286 17 52 471 11 467 4.94e-27 113
MS.gene80637.t1 MTR_3g088475 26.195 481 305 16 33 471 4 476 6.07e-26 110
MS.gene80637.t1 MTR_3g110660 25.367 477 298 17 41 471 14 478 2.70e-25 108
MS.gene80637.t1 MTR_1g029750 26.230 427 276 10 39 428 12 436 7.41e-25 107
MS.gene80637.t1 MTR_6g022780 26.790 433 300 11 50 472 3 428 2.11e-24 105
MS.gene80637.t1 MTR_1g093020 25.688 436 308 11 46 471 7 436 2.23e-24 105
MS.gene80637.t1 MTR_3g088455 26.360 478 295 17 34 471 15 475 2.36e-24 105
MS.gene80637.t1 MTR_8g080120 26.500 400 261 13 92 472 51 436 2.72e-24 105
MS.gene80637.t1 MTR_2g096830 27.356 435 298 12 48 472 2 428 9.90e-24 103
MS.gene80637.t1 MTR_3g096800 26.923 416 263 14 95 473 64 475 1.23e-23 103
MS.gene80637.t1 MTR_1g093030 25.934 455 302 17 32 471 2 436 2.67e-23 102
MS.gene80637.t1 MTR_1g007380 24.051 474 309 15 42 471 2 468 4.90e-23 102
MS.gene80637.t1 MTR_4g073520 25.410 488 292 18 39 471 38 508 1.02e-22 101
MS.gene80637.t1 MTR_7g038910 26.116 448 308 15 36 472 8 443 1.02e-22 100
MS.gene80637.t1 MTR_4g073520 25.410 488 292 18 39 471 38 508 1.21e-22 101
MS.gene80637.t1 MTR_3g085820 28.610 374 227 15 48 393 6 367 1.64e-22 99.4
MS.gene80637.t1 MTR_6g023075 26.097 433 303 11 50 472 3 428 4.29e-22 98.6
MS.gene80637.t1 MTR_3g096830 25.408 429 275 14 37 428 1 421 5.68e-22 98.6
MS.gene80637.t1 MTR_3g005740 25.223 448 291 15 50 472 41 469 8.00e-22 98.2
MS.gene80637.t1 MTR_7g038910 28.205 312 207 12 92 392 58 363 1.01e-20 94.4
MS.gene80637.t1 MTR_1g105995 24.946 465 296 15 52 471 10 466 2.87e-20 93.6
MS.gene80637.t1 MTR_7g038910 28.431 306 202 12 92 386 58 357 6.78e-20 91.7
MS.gene80637.t1 MTR_3g096840 25.653 421 260 16 95 472 70 480 7.08e-20 92.4
MS.gene80637.t1 MTR_1g093020 25.123 406 288 11 46 441 7 406 8.25e-20 91.7
MS.gene80637.t1 MTR_1g105990 25.268 467 287 16 52 467 10 465 4.96e-19 89.7
MS.gene80637.t1 MTR_1g106000 24.419 430 270 15 95 473 46 471 5.29e-19 89.7
MS.gene80637.t1 MTR_2g096830 26.934 349 237 12 48 386 2 342 1.57e-18 87.0
MS.gene80637.t1 MTR_1g007240 22.196 419 284 10 92 472 40 454 1.77e-18 88.2
MS.gene80637.t1 MTR_3g115090 25.287 435 287 15 32 440 55 477 3.80e-17 84.3
MS.gene80637.t1 MTR_5g096840 24.190 463 297 15 39 458 3 454 9.19e-17 82.8
MS.gene80637.t1 MTR_4g055637 30.435 207 124 5 278 474 182 378 1.12e-16 82.0
MS.gene80637.t1 MTR_3g088465 25.526 380 249 12 34 391 15 382 5.74e-16 80.1
MS.gene80637.t1 MTR_0531s0020 26.557 305 206 11 68 360 54 352 1.91e-15 78.2
MS.gene80637.t1 MTR_1g007270 23.094 459 310 15 39 459 4 457 4.40e-15 77.8
MS.gene80637.t1 MTR_3g461440 24.129 402 247 13 95 451 54 442 8.92e-15 76.6
MS.gene80637.t1 MTR_1g492640 35.664 143 87 3 63 201 41 182 9.23e-15 74.7
MS.gene80637.t1 MTR_3g461430 23.785 391 254 11 95 447 61 445 9.45e-15 77.0
MS.gene80637.t1 MTR_1g492640 35.664 143 87 3 63 201 59 200 9.61e-15 74.7
MS.gene80637.t1 MTR_1g007180 21.905 420 284 11 92 472 40 454 3.96e-14 74.7
MS.gene80637.t1 MTR_2g031750 20.574 418 286 12 95 472 43 454 4.69e-14 74.3
MS.gene80637.t1 MTR_5g023240 23.963 434 281 17 48 452 73 486 1.46e-13 73.2
MS.gene80637.t1 MTR_3g061390 23.919 393 251 15 95 447 54 438 2.31e-13 72.4
MS.gene80637.t1 MTR_3g461480 23.133 415 268 14 53 424 16 422 1.18e-11 67.0
MS.gene80637.t1 MTR_5g023260 24.263 441 282 18 46 455 92 511 2.11e-11 66.2
MS.gene80637.t1 MTR_4g033275 34.694 98 60 2 347 443 4 98 2.29e-11 60.8
MS.gene80637.t1 MTR_3g110420 22.249 418 279 13 95 471 55 467 5.17e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80637.t1 AT2G39890 76.376 436 103 0 39 474 7 442 0.0 704
MS.gene80637.t1 AT2G39890 76.376 436 103 0 39 474 7 442 0.0 704
MS.gene80637.t1 AT3G55740 76.291 426 101 0 49 474 14 439 0.0 694
MS.gene80637.t1 AT2G36590 77.962 422 93 0 53 474 15 436 0.0 674
MS.gene80637.t1 AT2G39890 77.285 383 87 0 92 474 1 383 0.0 627
MS.gene80637.t1 AT3G55740 76.240 383 91 0 92 474 1 383 0.0 618
MS.gene80637.t1 AT3G55740 76.240 383 91 0 92 474 1 383 0.0 618
MS.gene80637.t1 AT2G36590 78.361 305 66 0 53 357 15 319 2.75e-180 508
MS.gene80637.t1 AT1G08230 28.027 446 264 10 64 474 28 451 3.74e-44 161
MS.gene80637.t1 AT5G41800 28.767 438 268 13 64 473 27 448 5.55e-40 150
MS.gene80637.t1 AT1G08230 28.274 336 199 6 165 474 13 332 1.28e-33 129
MS.gene80637.t1 AT1G08230 28.274 336 199 6 165 474 13 332 1.28e-33 129
MS.gene80637.t1 AT1G08230 28.274 336 199 6 165 474 13 332 1.28e-33 129
MS.gene80637.t1 AT1G08230 28.274 336 199 6 165 474 32 351 2.20e-33 129
MS.gene80637.t1 AT5G40780 26.106 452 304 13 38 472 8 446 4.06e-31 125
MS.gene80637.t1 AT5G40780 26.768 396 265 10 92 472 13 398 3.38e-29 119
MS.gene80637.t1 AT5G40780 26.768 396 265 10 92 472 13 398 3.38e-29 119
MS.gene80637.t1 AT1G48640 25.280 447 307 11 47 472 13 453 4.29e-28 116
MS.gene80637.t1 AT1G24400 28.211 436 289 15 50 472 17 441 9.55e-28 115
MS.gene80637.t1 AT1G67640 26.852 432 300 12 50 472 17 441 3.17e-27 114
MS.gene80637.t1 AT5G09220 26.160 474 294 16 48 471 22 489 2.34e-26 112
MS.gene80637.t1 AT1G44100 26.392 485 296 18 37 471 3 476 2.63e-25 108
MS.gene80637.t1 AT1G61270 26.207 435 298 10 34 458 13 434 1.18e-24 106
MS.gene80637.t1 AT5G63850 25.000 420 266 12 95 471 49 462 3.26e-24 105
MS.gene80637.t1 AT3G01760 25.513 439 302 11 32 458 8 433 1.08e-23 103
MS.gene80637.t1 AT1G77380 26.730 419 259 14 95 471 60 472 5.37e-23 102
MS.gene80637.t1 AT1G71680 25.934 455 304 14 38 472 7 448 8.90e-23 100
MS.gene80637.t1 AT1G25530 27.342 395 264 11 92 472 55 440 1.37e-21 97.4
MS.gene80637.t1 AT1G58360 24.280 486 319 16 27 471 3 480 2.57e-18 87.8
MS.gene80637.t1 AT1G10010 24.078 461 304 13 55 474 19 474 6.19e-18 86.7
MS.gene80637.t1 AT1G10010 24.078 461 304 13 55 474 20 475 7.25e-18 86.3
MS.gene80637.t1 AT1G71680 26.100 341 227 12 38 361 7 339 1.42e-17 84.7
MS.gene80637.t1 AT5G49630 22.642 477 315 16 41 471 10 478 5.12e-15 77.8

Find 99 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCTGTTTATGTTCTATTT+AGG 0.133427 5.4:+64391995 MS.gene80637:intron
ATCTTTCAGCTCTTGGAATT+TGG 0.137122 5.4:+64392097 MS.gene80637:CDS
GATCTTGCTGGATATATTTA+TGG 0.154303 5.4:+64390222 MS.gene80637:CDS
ATTGCTATGCTTCATGAATT+TGG 0.182375 5.4:+64390174 MS.gene80637:CDS
AAATATTGGCTACATCATTT+TGG 0.209110 5.4:+64391224 MS.gene80637:CDS
GCTTATGTTCTTGGATATTC+AGG 0.210818 5.4:+64390066 MS.gene80637:CDS
ATTAATAGTGCTTATGTTCT+TGG 0.237548 5.4:+64390057 MS.gene80637:CDS
GATACCAAACATGGGATTAA+AGG 0.240091 5.4:+64394121 MS.gene80637:CDS
AGTAAAATATTTACGACAAT+TGG 0.244065 5.4:+64393208 MS.gene80637:CDS
TTATATCTGGTTACCTTTGC+AGG 0.244416 5.4:+64393464 MS.gene80637:CDS
TGGTTACCTTTGCAGGGTAC+TGG 0.248587 5.4:+64393471 MS.gene80637:CDS
GGCTGTTTATGTTCTATTTA+GGG 0.253457 5.4:+64391996 MS.gene80637:intron
AAGTCCGATGTACGAGTATT+TGG 0.263204 5.4:+64394099 MS.gene80637:CDS
GAACTTATCATTTAGAATCT+TGG 0.267192 5.4:+64394162 MS.gene80637:CDS
TTTGCAGGGTACTGGGCTTA+TGG 0.272236 5.4:+64393479 MS.gene80637:CDS
TGCGAAAACATGATAAGTTT+TGG 0.273586 5.4:-64394437 None:intergenic
AGGGACCATTATGGTTCCTT+TGG 0.291528 5.4:+64390086 MS.gene80637:CDS
ATTCCTCATCTTTCAGCTCT+TGG 0.291738 5.4:+64392090 MS.gene80637:CDS
TGGAGTTCTGCCATTATATC+TGG 0.316550 5.4:+64393451 MS.gene80637:CDS
TGGATATTCAGGGACCATTA+TGG 0.319732 5.4:+64390077 MS.gene80637:CDS
TTCATCATGTTCTTTACAAC+TGG 0.341148 5.4:-64393404 None:intergenic
GTAAAATATTTACGACAATT+GGG 0.357812 5.4:+64393209 MS.gene80637:CDS
GGGACCATTATGGTTCCTTT+GGG 0.360448 5.4:+64390087 MS.gene80637:CDS
GGTTGGATAGGTGGTGTTGT+TGG 0.363628 5.4:+64390108 MS.gene80637:CDS
CCATTATGGTTCCTTTGGGT+TGG 0.367229 5.4:+64390091 MS.gene80637:CDS
GCGCGAGATTATAGTGTTCC+TGG 0.367524 5.4:+64393175 MS.gene80637:CDS
TAACATCCATTCAAAAGCTT+TGG 0.380271 5.4:+64394335 MS.gene80637:CDS
ATTAGATACCGTGATCTTGC+TGG 0.380903 5.4:+64390210 MS.gene80637:CDS
TTTGGCTGGTTCGGCTTTGA+AGG 0.383069 5.4:+64391242 MS.gene80637:CDS
ACTCCCTTTAATCCCATGTT+TGG 0.383334 5.4:-64394125 None:intergenic
GCCACAACTTTCACCCAGAT+TGG 0.385424 5.4:-64393542 None:intergenic
TTTGGCATTGGATCAACATT+TGG 0.387263 5.4:+64394353 MS.gene80637:CDS
GCAAAGGTAACCAGATATAA+TGG 0.392872 5.4:-64393461 None:intergenic
TCAGCTCTTGGAATTTGGCT+TGG 0.399445 5.4:+64392102 MS.gene80637:CDS
ATGTGATGTATCAACTTGTA+AGG 0.417129 5.4:+64388815 MS.gene80637:CDS
ATGGTTCCTTTGGGTTGGAT+AGG 0.421589 5.4:+64390096 MS.gene80637:CDS
CTGATTTGATGTGCAGTGTC+TGG 0.427222 5.4:-64389890 None:intergenic
CCATTCAAAAGCTTTGGCAT+TGG 0.427620 5.4:+64394341 MS.gene80637:CDS
GGTTACCTTTGCAGGGTACT+GGG 0.432447 5.4:+64393472 MS.gene80637:CDS
TTGAATCATACCTGTATCTC+AGG 0.442836 5.4:-64393274 None:intergenic
GTGGGGTTTGTGTTGACAAC+GGG 0.444259 5.4:+64390033 MS.gene80637:CDS
ATAATGTCAAGGGTCCAATC+TGG 0.445142 5.4:+64393528 MS.gene80637:CDS
AGGAATGCTTCCTGAGATAC+AGG 0.446567 5.4:+64393264 MS.gene80637:CDS
TATTACAGCCTTTCTTCAAT+CGG 0.454235 5.4:+64393568 MS.gene80637:CDS
TCATTTAGAATCTTGGTAAG+AGG 0.460627 5.4:+64394169 MS.gene80637:CDS
ATACCAAACATGGGATTAAA+GGG 0.462442 5.4:+64394122 MS.gene80637:CDS
GATTTGCAAGGATAAATGTA+AGG 0.470613 5.4:-64394282 None:intergenic
CTTATGTTCTTGGATATTCA+GGG 0.476371 5.4:+64390067 MS.gene80637:CDS
GTTCCTTTGGGTTGGATAGG+TGG 0.476872 5.4:+64390099 MS.gene80637:CDS
ACATCGTTGTTATCAACATC+AGG 0.480642 5.4:-64389860 None:intergenic
GTTTGTTCTTATTTGTCACT+AGG 0.484789 5.4:-64394312 None:intergenic
CTCGTGTTCGCATATAATAC+AGG 0.485270 5.4:+64393244 MS.gene80637:CDS
TCAGCTCTACTGCCATTCCT+TGG 0.498923 5.4:+64394220 MS.gene80637:CDS
TAGATTCATGGTTTCAAGTG+GGG 0.513864 5.4:+64390016 MS.gene80637:intron
GAACGTTTCTGTTGATGAAG+AGG 0.516016 5.4:+64389820 MS.gene80637:CDS
GGAGATTTCATGAGCCTCAC+GGG 0.518640 5.4:+64394241 MS.gene80637:CDS
CGCGAGATTATAGTGTTCCT+GGG 0.519600 5.4:+64393176 MS.gene80637:CDS
TGAAAGATGAGGAATACAAA+TGG 0.520939 5.4:-64392082 None:intergenic
TGCAATGACCGATTGAAGAA+AGG 0.521349 5.4:-64393576 None:intergenic
CCAACCCAAAGGAACCATAA+TGG 0.524633 5.4:-64390091 None:intergenic
TATATCTGGTTACCTTTGCA+GGG 0.525745 5.4:+64393465 MS.gene80637:CDS
TGGAGATTTCATGAGCCTCA+CGG 0.525781 5.4:+64394240 MS.gene80637:CDS
ATTTGCAAGGATAAATGTAA+GGG 0.535895 5.4:-64394281 None:intergenic
CTTGTACTGTCACTAAAAGA+TGG 0.543411 5.4:+64392165 MS.gene80637:CDS
ATATGCGAACACGAGATTAG+CGG 0.554545 5.4:-64393236 None:intergenic
TAAAATATTTACGACAATTG+GGG 0.554830 5.4:+64393210 MS.gene80637:CDS
TAATGTCAAGGGTCCAATCT+GGG 0.555099 5.4:+64393529 MS.gene80637:CDS
TGTAGATTCATGGTTTCAAG+TGG 0.557082 5.4:+64390014 MS.gene80637:intron
GTAGATTCATGGTTTCAAGT+GGG 0.559483 5.4:+64390015 MS.gene80637:intron
TGCACACACAAGTCCAGCTA+TGG 0.562499 5.4:-64392052 None:intergenic
CTATGCTTCATGAATTTGGT+GGG 0.571541 5.4:+64390178 MS.gene80637:CDS
CCGCAGCGCTGCAATAGTTG+CGG 0.572180 5.4:-64394398 None:intergenic
AGTTGCGGCAACAGACATGA+TGG 0.574833 5.4:-64394383 None:intergenic
TCCAATCTGGGTGAAAGTTG+TGG 0.575627 5.4:+64393541 MS.gene80637:CDS
CTCATGAAATCTCCAAGGAA+TGG 0.583815 5.4:-64394232 None:intergenic
GTATCCAAATACTCGTACAT+CGG 0.587381 5.4:-64394103 None:intergenic
GAGTATTTGGATACCAAACA+TGG 0.591198 5.4:+64394112 MS.gene80637:CDS
GCTATGCTTCATGAATTTGG+TGG 0.593644 5.4:+64390177 MS.gene80637:CDS
CCAGCTATGGCAATAAAATG+TGG 0.593703 5.4:-64392039 None:intergenic
TTTAGAATCTTGGTAAGAGG+TGG 0.593972 5.4:+64394172 MS.gene80637:CDS
GAAAAGCATATTGCCTCACA+TGG 0.595626 5.4:+64391172 MS.gene80637:CDS
ATTCCAAGAGCTGAAAGATG+AGG 0.614707 5.4:-64392093 None:intergenic
AAATATATCCAGCAAGATCA+CGG 0.617306 5.4:-64390218 None:intergenic
ACTGCACATCAAATCAGCAC+TGG 0.622058 5.4:+64389896 MS.gene80637:CDS
AGTGGGGTTTGTGTTGACAA+CGG 0.623484 5.4:+64390032 MS.gene80637:CDS
CTAGGTACATATGATTTGCA+AGG 0.626482 5.4:-64394294 None:intergenic
GGAACACTATAATCTCGCGC+TGG 0.631796 5.4:-64393172 None:intergenic
ATATAATGGCAGAACTCCAA+CGG 0.633354 5.4:-64393447 None:intergenic
ATAAGCCCAGTACCCTGCAA+AGG 0.654594 5.4:-64393477 None:intergenic
CCGCAACTATTGCAGCGCTG+CGG 0.655381 5.4:+64394398 MS.gene80637:CDS
TTTGCAAGGATAAATGTAAG+GGG 0.658355 5.4:-64394280 None:intergenic
TGAGGCTCATGAAATCTCCA+AGG 0.658818 5.4:-64394237 None:intergenic
GGCTGTAGCAAAATTCACGC+TGG 0.660167 5.4:+64389790 MS.gene80637:CDS
ACACCACCTATCCAACCCAA+AGG 0.675537 5.4:-64390102 None:intergenic
TGTAGCAAAATTCACGCTGG+CGG 0.678564 5.4:+64389793 MS.gene80637:CDS
GTGCTATGACAATATATGCG+AGG 0.685612 5.4:-64392143 None:intergenic
AGTATTTGGATACCAAACAT+GGG 0.691576 5.4:+64394113 MS.gene80637:CDS
CATACTGCAGAGTCCATGTG+AGG 0.716059 5.4:-64391185 None:intergenic
ATGTGCTTATAGCTCCCGTG+AGG 0.755171 5.4:-64394255 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATATAAACTAACAATA+CGG - chr5.4:64392696-64392715 None:intergenic 10.0%
!!! ATTCAAGTTATAAAATATTT+AGG - chr5.4:64394031-64394050 None:intergenic 10.0%
!! AGTAAAACTTACTTAAAAAA+TGG - chr5.4:64393347-64393366 None:intergenic 15.0%
!! TAAATATAAACTAACAATAC+GGG - chr5.4:64392695-64392714 None:intergenic 15.0%
!!! AATCTTTTCATGATAAATAT+TGG + chr5.4:64391210-64391229 MS.gene80637:CDS 15.0%
!!! AATGACTTTTTTTTTTTGTT+AGG + chr5.4:64389259-64389278 MS.gene80637:intron 15.0%
!!! ATGACTTTTTTTTTTTGTTA+GGG + chr5.4:64389260-64389279 MS.gene80637:intron 15.0%
!!! TTTAAAATTTAGTTTAGATG+TGG + chr5.4:64393636-64393655 MS.gene80637:intron 15.0%
!!! TTTTTGCTTAATATTTTCTT+TGG - chr5.4:64391732-64391751 None:intergenic 15.0%
!! AAAGAAACAATTAATTACAG+AGG - chr5.4:64392309-64392328 None:intergenic 20.0%
!! AACATTTCATTATCACTATT+AGG + chr5.4:64393139-64393158 MS.gene80637:intron 20.0%
!! AATTTGCAAAATGACAATTT+AGG + chr5.4:64390694-64390713 MS.gene80637:intron 20.0%
!! ACATAGAATCTTCAAAATTA+TGG - chr5.4:64390773-64390792 None:intergenic 20.0%
!! AGTAAAATATTTACGACAAT+TGG + chr5.4:64393208-64393227 MS.gene80637:CDS 20.0%
!! ATAAAGAAATCTTGATATCA+TGG - chr5.4:64390616-64390635 None:intergenic 20.0%
!! CAAACTACTTATAAAAGATT+TGG + chr5.4:64389671-64389690 MS.gene80637:intron 20.0%
!! CTTGAAGAAAAAAAAAAAGA+GGG + chr5.4:64389769-64389788 MS.gene80637:intron 20.0%
!! GCTTCTAAATAAAATTATCT+GGG - chr5.4:64388987-64389006 None:intergenic 20.0%
!! GTAAAATATTTACGACAATT+GGG + chr5.4:64393209-64393228 MS.gene80637:CDS 20.0%
!! TAAAATATTTACGACAATTG+GGG + chr5.4:64393210-64393229 MS.gene80637:CDS 20.0%
!! TCTTGAAGAAAAAAAAAAAG+AGG + chr5.4:64389768-64389787 MS.gene80637:intron 20.0%
!! TGAAGAGAATAATGTAATTA+TGG - chr5.4:64391293-64391312 None:intergenic 20.0%
!! TTTGGTCATTGAAATTATAA+GGG + chr5.4:64390651-64390670 MS.gene80637:intron 20.0%
!!! AAGGTTATATTATTTCTTCT+TGG + chr5.4:64393295-64393314 MS.gene80637:intron 20.0%
!!! AATTGCTATTTCAAAAATTG+AGG + chr5.4:64390910-64390929 MS.gene80637:intron 20.0%
!!! ACGTCTAATTATTGATTTAT+TGG - chr5.4:64391699-64391718 None:intergenic 20.0%
!!! ATTGCTATTTCAAAAATTGA+GGG + chr5.4:64390911-64390930 MS.gene80637:intron 20.0%
!!! CAAAATTATGGTGTTAAATT+TGG - chr5.4:64390761-64390780 None:intergenic 20.0%
!!! GAAAATGAAAATTTTGTTCA+TGG - chr5.4:64389721-64389740 None:intergenic 20.0%
!!! GGTTTGTCATTTTAAAAATT+AGG + chr5.4:64393942-64393961 MS.gene80637:intron 20.0%
!!! TAAGTAAGTTTTACTCTATT+TGG + chr5.4:64393352-64393371 MS.gene80637:intron 20.0%
!!! TAATAGTGATAATGAAATGT+TGG - chr5.4:64393140-64393159 None:intergenic 20.0%
!!! TTAAATCCAACTCAATTTTA+AGG - chr5.4:64391755-64391774 None:intergenic 20.0%
!!! TTTTCTACCTACAATAAAAA+TGG - chr5.4:64391157-64391176 None:intergenic 20.0%
! AAAATCGTGAATTTAGATAC+AGG + chr5.4:64393970-64393989 MS.gene80637:intron 25.0%
! AAAATGTATAAGTGGAGAAA+AGG + chr5.4:64393921-64393940 MS.gene80637:intron 25.0%
! AAATCGTGAATTTAGATACA+GGG + chr5.4:64393971-64393990 MS.gene80637:intron 25.0%
! AATTAGCTGAAAACAACTTA+TGG + chr5.4:64390431-64390450 MS.gene80637:intron 25.0%
! ACTAATAAGTCATAACTATC+TGG + chr5.4:64389496-64389515 MS.gene80637:intron 25.0%
! ATTAATAGTGCTTATGTTCT+TGG + chr5.4:64390057-64390076 MS.gene80637:CDS 25.0%
! ATTGATTAGTATCAAGAATC+TGG + chr5.4:64391051-64391070 MS.gene80637:intron 25.0%
! ATTTGCAAGGATAAATGTAA+GGG - chr5.4:64394284-64394303 None:intergenic 25.0%
! CAAAAACCTTAAAATTGAGT+TGG + chr5.4:64391746-64391765 MS.gene80637:intron 25.0%
! CACACAAGAATTGATAAAAA+TGG - chr5.4:64391517-64391536 None:intergenic 25.0%
! CCAAAATCTCAAACTATTAA+TGG + chr5.4:64389403-64389422 MS.gene80637:intron 25.0%
! CGCTTCTAAATAAAATTATC+TGG - chr5.4:64388988-64389007 None:intergenic 25.0%
! CTTTGGTCATTGAAATTATA+AGG + chr5.4:64390650-64390669 MS.gene80637:intron 25.0%
! GATTATTCAAAGCAATATGT+AGG + chr5.4:64390813-64390832 MS.gene80637:intron 25.0%
! GTCATGTTAATATGAATTAG+CGG + chr5.4:64391543-64391562 MS.gene80637:intron 25.0%
! TAATGTACATGTTTAATGCT+TGG + chr5.4:64392266-64392285 MS.gene80637:intron 25.0%
! TATATCACTGATGTTATGTT+TGG + chr5.4:64390278-64390297 MS.gene80637:intron 25.0%
! TATTGAATAAATCAGCTCTT+TGG + chr5.4:64390633-64390652 MS.gene80637:intron 25.0%
! TGAAATTTATGAAGAACCTT+TGG - chr5.4:64389065-64389084 None:intergenic 25.0%
!! AACAAGGTAAAGACAAATTT+TGG - chr5.4:64392928-64392947 None:intergenic 25.0%
!! ATGGTGTTAAATTTGGAAAA+AGG - chr5.4:64390754-64390773 None:intergenic 25.0%
!! CTTTTTATGTGTGTTCATAT+TGG - chr5.4:64389288-64389307 None:intergenic 25.0%
!! GAACTTATCATTTAGAATCT+TGG + chr5.4:64394162-64394181 MS.gene80637:CDS 25.0%
!! TTTTACATTTTCTGTGTATG+TGG + chr5.4:64391609-64391628 MS.gene80637:intron 25.0%
!! TTTTTGCTGAATAATGTCAA+GGG + chr5.4:64393518-64393537 MS.gene80637:CDS 25.0%
!!! AAATATTGGCTACATCATTT+TGG + chr5.4:64391224-64391243 MS.gene80637:CDS 25.0%
!!! ACAATGTAGTTGTTTGTTAT+TGG - chr5.4:64389599-64389618 None:intergenic 25.0%
!!! AGGTAATGAATTGTTTTGTA+CGG + chr5.4:64390833-64390852 MS.gene80637:intron 25.0%
!!! CAATGTAGTTGTTTGTTATT+GGG - chr5.4:64389598-64389617 None:intergenic 25.0%
!!! CCATTAATAGTTTGAGATTT+TGG - chr5.4:64389406-64389425 None:intergenic 25.0%
!!! GTTTGTTCCATTTTTATTGT+AGG + chr5.4:64391147-64391166 MS.gene80637:intron 25.0%
!!! TTTTAAAAGCAGCAAAGTAT+TGG - chr5.4:64393623-64393642 None:intergenic 25.0%
!!! TTTTTGTTGTTGTAGATTCA+TGG + chr5.4:64390004-64390023 MS.gene80637:intron 25.0%
!!! TTTTTTGCTGAATAATGTCA+AGG + chr5.4:64393517-64393536 MS.gene80637:CDS 25.0%
AAATATATCCAGCAAGATCA+CGG - chr5.4:64390221-64390240 None:intergenic 30.0%
AAGTGTGACATTATATTCCT+TGG - chr5.4:64392492-64392511 None:intergenic 30.0%
AATCGTGAATTTAGATACAG+GGG + chr5.4:64393972-64393991 MS.gene80637:intron 30.0%
AGGCTGTTTATGTTCTATTT+AGG + chr5.4:64391995-64392014 MS.gene80637:intron 30.0%
AGTATTTGGATACCAAACAT+GGG + chr5.4:64394113-64394132 MS.gene80637:CDS 30.0%
AGTCAAAAATCACATACAAC+TGG - chr5.4:64389175-64389194 None:intergenic 30.0%
AGTGATATAATCTAGTCAAG+GGG - chr5.4:64390267-64390286 None:intergenic 30.0%
ATACCAAACATGGGATTAAA+GGG + chr5.4:64394122-64394141 MS.gene80637:CDS 30.0%
ATCAACCTCAAAAGTTTAGA+TGG - chr5.4:64393754-64393773 None:intergenic 30.0%
ATGTGATGTATCAACTTGTA+AGG + chr5.4:64388815-64388834 MS.gene80637:CDS 30.0%
ATTGCTATGCTTCATGAATT+TGG + chr5.4:64390174-64390193 MS.gene80637:CDS 30.0%
CAGTGATATAATCTAGTCAA+GGG - chr5.4:64390268-64390287 None:intergenic 30.0%
CTATTTGGTTGTAACCTAAT+AGG + chr5.4:64393367-64393386 MS.gene80637:intron 30.0%
CTGAAATACTACATACTAGA+AGG - chr5.4:64392593-64392612 None:intergenic 30.0%
CTTATGTTCTTGGATATTCA+GGG + chr5.4:64390067-64390086 MS.gene80637:CDS 30.0%
GATCTTGCTGGATATATTTA+TGG + chr5.4:64390222-64390241 MS.gene80637:CDS 30.0%
GATTTGCAAGGATAAATGTA+AGG - chr5.4:64394285-64394304 None:intergenic 30.0%
GGCTGTTTATGTTCTATTTA+GGG + chr5.4:64391996-64392015 MS.gene80637:intron 30.0%
GTCAAAGAAAATTTCACCAA+AGG + chr5.4:64389046-64389065 MS.gene80637:intron 30.0%
GTCATTGAAATTATAAGGGT+CGG + chr5.4:64390655-64390674 MS.gene80637:intron 30.0%
TAACATCCATTCAAAAGCTT+TGG + chr5.4:64394335-64394354 MS.gene80637:CDS 30.0%
TATTACAGCCTTTCTTCAAT+CGG + chr5.4:64393568-64393587 MS.gene80637:CDS 30.0%
TCAACCTCAAAAGTTTAGAT+GGG - chr5.4:64393753-64393772 None:intergenic 30.0%
TCAATTCATTTAGAGAAGTC+AGG - chr5.4:64393020-64393039 None:intergenic 30.0%
TCAGTGATATAATCTAGTCA+AGG - chr5.4:64390269-64390288 None:intergenic 30.0%
TCATCAACAACATAAACAAG+TGG + chr5.4:64389646-64389665 MS.gene80637:intron 30.0%
TCTTTCAAACAGTCTCATAA+GGG + chr5.4:64390480-64390499 MS.gene80637:intron 30.0%
TGAAAGATGAGGAATACAAA+TGG - chr5.4:64392085-64392104 None:intergenic 30.0%
TGAAGAACAGAAAAAGTTGT+GGG + chr5.4:64389561-64389580 MS.gene80637:intron 30.0%
TGACAACAAGTTCTTGAATT+AGG - chr5.4:64390555-64390574 None:intergenic 30.0%
TTATTAGTGAAGTCACAGAA+AGG - chr5.4:64391478-64391497 None:intergenic 30.0%
TTCATATACATCGACATTGT+TGG - chr5.4:64388851-64388870 None:intergenic 30.0%
TTCATCATGTTCTTTACAAC+TGG - chr5.4:64393407-64393426 None:intergenic 30.0%
TTTGCAAGGATAAATGTAAG+GGG - chr5.4:64394283-64394302 None:intergenic 30.0%
! ATATCGTGGATTTAAAACTG+AGG - chr5.4:64393696-64393715 None:intergenic 30.0%
! CATACTAGAAGGATATTTTC+AGG - chr5.4:64392582-64392601 None:intergenic 30.0%
! CATGGATTATGTAACACAAA+TGG - chr5.4:64389098-64389117 None:intergenic 30.0%
! CTATATTTTCAGTTTACCGT+TGG + chr5.4:64393431-64393450 MS.gene80637:CDS 30.0%
! GACTAACCTACTAAGATTTT+GGG + chr5.4:64391407-64391426 MS.gene80637:intron 30.0%
! GTTTGTTCTTATTTGTCACT+AGG - chr5.4:64394315-64394334 None:intergenic 30.0%
! TATCGTGGATTTAAAACTGA+GGG - chr5.4:64393695-64393714 None:intergenic 30.0%
! TCATTTAGAATCTTGGTAAG+AGG + chr5.4:64394169-64394188 MS.gene80637:CDS 30.0%
! TGCGAAAACATGATAAGTTT+TGG - chr5.4:64394440-64394459 None:intergenic 30.0%
! TGTCTGAAACTTACAATTCA+AGG + chr5.4:64390943-64390962 MS.gene80637:intron 30.0%
! TTCTCCACTTATACATTTTG+AGG - chr5.4:64393920-64393939 None:intergenic 30.0%
! TTCTTCTTGGAGTTTTTGTT+TGG + chr5.4:64393308-64393327 MS.gene80637:intron 30.0%
!! ATGTCACACTTTTGTCATTT+TGG + chr5.4:64392501-64392520 MS.gene80637:intron 30.0%
!! CTGAATTTTGATGATTTGAC+AGG - chr5.4:64393897-64393916 None:intergenic 30.0%
!! GGTAAAGACAAATTTTGGAA+AGG - chr5.4:64392923-64392942 None:intergenic 30.0%
!! GTTTGTTATTGGGTTATCAT+GGG - chr5.4:64389588-64389607 None:intergenic 30.0%
!! TGTTTGTTATTGGGTTATCA+TGG - chr5.4:64389589-64389608 None:intergenic 30.0%
!! TTGTTGTGAAGGCTATTTTA+GGG + chr5.4:64392943-64392962 MS.gene80637:intron 30.0%
!!! AAATGAGTTTTTTAGCGAGA+TGG + chr5.4:64393832-64393851 MS.gene80637:intron 30.0%
!!! AATGAGTTTTTTAGCGAGAT+GGG + chr5.4:64393833-64393852 MS.gene80637:intron 30.0%
!!! ATCAGACGTTTTGAAAATTG+AGG - chr5.4:64393724-64393743 None:intergenic 30.0%
!!! CAGTTTTAAATCCACGATAT+TGG + chr5.4:64393696-64393715 MS.gene80637:intron 30.0%
!!! TCAGACGTTTTGAAAATTGA+GGG - chr5.4:64393723-64393742 None:intergenic 30.0%
!!! TTCTTCTTAGATGTCGATTT+TGG - chr5.4:64389353-64389372 None:intergenic 30.0%
AAGCAGTAGATACTTAGACT+CGG + chr5.4:64392970-64392989 MS.gene80637:intron 35.0%
AAGTCAATCTCAATCCAAAC+AGG + chr5.4:64390528-64390547 MS.gene80637:intron 35.0%
ACAAGACCCAAAATCTTAGT+AGG - chr5.4:64391416-64391435 None:intergenic 35.0%
ACATCGTTGTTATCAACATC+AGG - chr5.4:64389863-64389882 None:intergenic 35.0%
ACCAAAAATCGTGAGACAAA+GGG - chr5.4:64393671-64393690 None:intergenic 35.0%
ATATAATGGCAGAACTCCAA+CGG - chr5.4:64393450-64393469 None:intergenic 35.0%
ATCGTGAATTTAGATACAGG+GGG + chr5.4:64393973-64393992 MS.gene80637:intron 35.0%
ATCTTTCAGCTCTTGGAATT+TGG + chr5.4:64392097-64392116 MS.gene80637:CDS 35.0%
ATTAGTAATGAAGACAGTCG+AGG + chr5.4:64391580-64391599 MS.gene80637:intron 35.0%
CAACCTCAAAAGTTTAGATG+GGG - chr5.4:64393752-64393771 None:intergenic 35.0%
CTAAAATAGCCTTCACAACA+AGG - chr5.4:64392944-64392963 None:intergenic 35.0%
CTATGCTTCATGAATTTGGT+GGG + chr5.4:64390178-64390197 MS.gene80637:CDS 35.0%
CTCTTTCAAACAGTCTCATA+AGG + chr5.4:64390479-64390498 MS.gene80637:intron 35.0%
CTGAAGAACAGAAAAAGTTG+TGG + chr5.4:64389560-64389579 MS.gene80637:intron 35.0%
CTTGTACTGTCACTAAAAGA+TGG + chr5.4:64392165-64392184 MS.gene80637:CDS 35.0%
GAAATATACCAGAATACGCA+TGG - chr5.4:64389116-64389135 None:intergenic 35.0%
GAAGGAAAGATGAAACTCAT+AGG - chr5.4:64392419-64392438 None:intergenic 35.0%
GAGTATTTGGATACCAAACA+TGG + chr5.4:64394112-64394131 MS.gene80637:CDS 35.0%
GATACCAAACATGGGATTAA+AGG + chr5.4:64394121-64394140 MS.gene80637:CDS 35.0%
GCAAAGGTAACCAGATATAA+TGG - chr5.4:64393464-64393483 None:intergenic 35.0%
GCTTATGTTCTTGGATATTC+AGG + chr5.4:64390066-64390085 MS.gene80637:CDS 35.0%
GTATCCAAATACTCGTACAT+CGG - chr5.4:64394106-64394125 None:intergenic 35.0%
TACATAATCCATGCGTATTC+TGG + chr5.4:64389105-64389124 MS.gene80637:intron 35.0%
TATATCTGGTTACCTTTGCA+GGG + chr5.4:64393465-64393484 MS.gene80637:CDS 35.0%
TCAGCCTCAAAATGTATAAG+TGG + chr5.4:64393913-64393932 MS.gene80637:intron 35.0%
TGAGATACAGGTATGATTCA+AGG + chr5.4:64393276-64393295 MS.gene80637:intron 35.0%
TGTAGATTCATGGTTTCAAG+TGG + chr5.4:64390014-64390033 MS.gene80637:intron 35.0%
TTATATCTGGTTACCTTTGC+AGG + chr5.4:64393464-64393483 MS.gene80637:CDS 35.0%
TTCATCTTTCCTTCTATCTC+TGG + chr5.4:64392425-64392444 MS.gene80637:intron 35.0%
TTCTTGAATTAGGACCTGTT+TGG - chr5.4:64390545-64390564 None:intergenic 35.0%
TTGAATCATACCTGTATCTC+AGG - chr5.4:64393277-64393296 None:intergenic 35.0%
! AAACCTTTTCCCATTAGATG+AGG - chr5.4:64391834-64391853 None:intergenic 35.0%
! ACAATTAATTACAGAGGCAC+CGG - chr5.4:64392303-64392322 None:intergenic 35.0%
! ATCGTGGATTTAAAACTGAG+GGG - chr5.4:64393694-64393713 None:intergenic 35.0%
! CGACTAACCTACTAAGATTT+TGG + chr5.4:64391406-64391425 MS.gene80637:intron 35.0%
! CTAGGTACATATGATTTGCA+AGG - chr5.4:64394297-64394316 None:intergenic 35.0%
! GAAGTAGATAACTTGTCAAC+AGG - chr5.4:64391454-64391473 None:intergenic 35.0%
! GCAATTTTACTCTGCAAATG+TGG - chr5.4:64389445-64389464 None:intergenic 35.0%
! GTAGATTCATGGTTTCAAGT+GGG + chr5.4:64390015-64390034 MS.gene80637:intron 35.0%
! GTAGGATATGCGACTTTTTA+GGG + chr5.4:64388920-64388939 MS.gene80637:intron 35.0%
! TAGATTCATGGTTTCAAGTG+GGG + chr5.4:64390016-64390035 MS.gene80637:intron 35.0%
! TGTAGGATATGCGACTTTTT+AGG + chr5.4:64388919-64388938 MS.gene80637:intron 35.0%
! TTCATTTTCTCTGCTTACCA+AGG + chr5.4:64392472-64392491 MS.gene80637:intron 35.0%
! TTGTCTTTACCTTGTTGTGA+AGG + chr5.4:64392932-64392951 MS.gene80637:intron 35.0%
! TTTAGAATCTTGGTAAGAGG+TGG + chr5.4:64394172-64394191 MS.gene80637:CDS 35.0%
! TTTCCCCATCTAAACTTTTG+AGG + chr5.4:64393746-64393765 MS.gene80637:intron 35.0%
! TTTGGCATTGGATCAACATT+TGG + chr5.4:64394353-64394372 MS.gene80637:CDS 35.0%
! TTTGGTCTTCTACTGGTATT+TGG + chr5.4:64392519-64392538 MS.gene80637:intron 35.0%
!! AGCTTTATTATCACTACGCT+TGG + chr5.4:64393087-64393106 MS.gene80637:intron 35.0%
!! ATTTTACTTGTTGATGTCCC+AGG - chr5.4:64393196-64393215 None:intergenic 35.0%
!! CTTGTTGTGAAGGCTATTTT+AGG + chr5.4:64392942-64392961 MS.gene80637:intron 35.0%
!! GCATTTGTTTGCTTTTGCTA+TGG + chr5.4:64388953-64388972 MS.gene80637:intron 35.0%
!! TTGTTGATTTGTTGTCATGC+AGG + chr5.4:64391975-64391994 MS.gene80637:intron 35.0%
!!! AATTTGGCTTGGATTTTCGA+CGG + chr5.4:64392113-64392132 MS.gene80637:CDS 35.0%
!!! ATGAGTTTTTTAGCGAGATG+GGG + chr5.4:64393834-64393853 MS.gene80637:intron 35.0%
!!! TTGTCATTTTGGTCTTCTAC+TGG + chr5.4:64392512-64392531 MS.gene80637:intron 35.0%
AAATTGAGGGACCAATATCG+TGG - chr5.4:64393710-64393729 None:intergenic 40.0%
AAGTCCGATGTACGAGTATT+TGG + chr5.4:64394099-64394118 MS.gene80637:CDS 40.0%
AAGTCGCATATCCTACATGA+TGG - chr5.4:64388916-64388935 None:intergenic 40.0%
ACGCTTGGTTAATTCAGTGT+GGG + chr5.4:64393102-64393121 MS.gene80637:intron 40.0%
ACTCCCTTTAATCCCATGTT+TGG - chr5.4:64394128-64394147 None:intergenic 40.0%
AGAAACTTACGTGATAGCTG+AGG + chr5.4:64393798-64393817 MS.gene80637:intron 40.0%
AGACTGTTTGAAAGAGCTCA+TGG - chr5.4:64390475-64390494 None:intergenic 40.0%
ATAATGTCAAGGGTCCAATC+TGG + chr5.4:64393528-64393547 MS.gene80637:CDS 40.0%
ATATGCGAACACGAGATTAG+CGG - chr5.4:64393239-64393258 None:intergenic 40.0%
ATTAGATACCGTGATCTTGC+TGG + chr5.4:64390210-64390229 MS.gene80637:CDS 40.0%
ATTCCAAGAGCTGAAAGATG+AGG - chr5.4:64392096-64392115 None:intergenic 40.0%
ATTCCTCATCTTTCAGCTCT+TGG + chr5.4:64392090-64392109 MS.gene80637:CDS 40.0%
CAAAAATCGTGAGACAAAGG+GGG - chr5.4:64393669-64393688 None:intergenic 40.0%
CCAAAAATCGTGAGACAAAG+GGG - chr5.4:64393670-64393689 None:intergenic 40.0%
CCAGCTATGGCAATAAAATG+TGG - chr5.4:64392042-64392061 None:intergenic 40.0%
CTAATTTCCACAAGCTCTCA+AGG - chr5.4:64390417-64390436 None:intergenic 40.0%
CTCATGAAATCTCCAAGGAA+TGG - chr5.4:64394235-64394254 None:intergenic 40.0%
CTCGTGTTCGCATATAATAC+AGG + chr5.4:64393244-64393263 MS.gene80637:CDS 40.0%
GACCAAAAATCGTGAGACAA+AGG - chr5.4:64393672-64393691 None:intergenic 40.0%
GCTATGCTTCATGAATTTGG+TGG + chr5.4:64390177-64390196 MS.gene80637:CDS 40.0%
GTCGATGTATATGAAGAGAG+TGG + chr5.4:64388856-64388875 MS.gene80637:intron 40.0%
GTGCTATGACAATATATGCG+AGG - chr5.4:64392146-64392165 None:intergenic 40.0%
TAATGTCAAGGGTCCAATCT+GGG + chr5.4:64393529-64393548 MS.gene80637:CDS 40.0%
TACGCTTGGTTAATTCAGTG+TGG + chr5.4:64393101-64393120 MS.gene80637:intron 40.0%
TGACTGCACAAATTGAGATC+AGG - chr5.4:64391907-64391926 None:intergenic 40.0%
TGCAATGACCGATTGAAGAA+AGG - chr5.4:64393579-64393598 None:intergenic 40.0%
TGGAGTTCTGCCATTATATC+TGG + chr5.4:64393451-64393470 MS.gene80637:CDS 40.0%
TGGATATTCAGGGACCATTA+TGG + chr5.4:64390077-64390096 MS.gene80637:CDS 40.0%
TTACTCTGCAAATGTGGTCA+CGG - chr5.4:64389439-64389458 None:intergenic 40.0%
TTGATCCGACCTCATCTAAT+GGG + chr5.4:64391822-64391841 MS.gene80637:intron 40.0%
TTGTTCAGACCAGAGATAGA+AGG - chr5.4:64392437-64392456 None:intergenic 40.0%
TTTGATCCGACCTCATCTAA+TGG + chr5.4:64391821-64391840 MS.gene80637:intron 40.0%
! ATCTACCAGAAGCATAAGAG+AGG - chr5.4:64394073-64394092 None:intergenic 40.0%
! CAGTACCTCATTCACGATTT+TGG - chr5.4:64394000-64394019 None:intergenic 40.0%
! CCAATGCCAAAGCTTTTGAA+TGG - chr5.4:64394344-64394363 None:intergenic 40.0%
! CCACATTTTATTGCCATAGC+TGG + chr5.4:64392039-64392058 MS.gene80637:CDS 40.0%
! CCATTCAAAAGCTTTGGCAT+TGG + chr5.4:64394341-64394360 MS.gene80637:CDS 40.0%
! CTTTTCCCATTAGATGAGGT+CGG - chr5.4:64391830-64391849 None:intergenic 40.0%
! GAAAAGCATATTGCCTCACA+TGG + chr5.4:64391172-64391191 MS.gene80637:CDS 40.0%
! GAACGTTTCTGTTGATGAAG+AGG + chr5.4:64389820-64389839 MS.gene80637:CDS 40.0%
!! AATTAATTACAGAGGCACCG+GGG - chr5.4:64392301-64392320 None:intergenic 40.0%
!! ATTGGCTACATCATTTTGGC+TGG + chr5.4:64391228-64391247 MS.gene80637:CDS 40.0%
!! CAATTAATTACAGAGGCACC+GGG - chr5.4:64392302-64392321 None:intergenic 40.0%
!!! CTACATCATTTTGGCTGGTT+CGG + chr5.4:64391233-64391252 MS.gene80637:CDS 40.0%
AACCTGTGTCACCATCATGT+AGG + chr5.4:64388902-64388921 MS.gene80637:intron 45.0%
AAGCTATCCTTGAGAGCTTG+TGG + chr5.4:64390407-64390426 MS.gene80637:intron 45.0%
ACTGCACATCAAATCAGCAC+TGG + chr5.4:64389896-64389915 MS.gene80637:CDS 45.0%
AGGAATGCTTCCTGAGATAC+AGG + chr5.4:64393264-64393283 MS.gene80637:CDS 45.0%
AGGGACCATTATGGTTCCTT+TGG + chr5.4:64390086-64390105 MS.gene80637:CDS 45.0%
CCAACCCAAAGGAACCATAA+TGG - chr5.4:64390094-64390113 None:intergenic 45.0%
CCATTATGGTTCCTTTGGGT+TGG + chr5.4:64390091-64390110 MS.gene80637:CDS 45.0%
CGACCTCATCTAATGGGAAA+AGG + chr5.4:64391828-64391847 MS.gene80637:intron 45.0%
CGCGAGATTATAGTGTTCCT+GGG + chr5.4:64393176-64393195 MS.gene80637:CDS 45.0%
CTGCACAAATTGAGATCAGG+AGG - chr5.4:64391904-64391923 None:intergenic 45.0%
GATAGCCTCTCTTATGCTTC+TGG + chr5.4:64394065-64394084 MS.gene80637:intron 45.0%
GGGACCATTATGGTTCCTTT+GGG + chr5.4:64390087-64390106 MS.gene80637:CDS 45.0%
TCAGCTCTTGGAATTTGGCT+TGG + chr5.4:64392102-64392121 MS.gene80637:CDS 45.0%
TCCAATCTGGGTGAAAGTTG+TGG + chr5.4:64393541-64393560 MS.gene80637:CDS 45.0%
TGAGGCTCATGAAATCTCCA+AGG - chr5.4:64394240-64394259 None:intergenic 45.0%
TGGAGATTTCATGAGCCTCA+CGG + chr5.4:64394240-64394259 MS.gene80637:CDS 45.0%
TGGCACTTACAAGTTACGTG+TGG - chr5.4:64389155-64389174 None:intergenic 45.0%
TGTAGCAAAATTCACGCTGG+CGG + chr5.4:64389793-64389812 MS.gene80637:CDS 45.0%
TTGACAGGTGAAAGCTTGCA+TGG - chr5.4:64393882-64393901 None:intergenic 45.0%
TTGTCTGATCGTCGCCTATT+AGG - chr5.4:64393384-64393403 None:intergenic 45.0%
! AGTGGGGTTTGTGTTGACAA+CGG + chr5.4:64390032-64390051 MS.gene80637:CDS 45.0%
! ATCCTACATGATGGTGACAC+AGG - chr5.4:64388907-64388926 None:intergenic 45.0%
! CCCCTTTGTCTCACGATTTT+TGG + chr5.4:64393667-64393686 MS.gene80637:intron 45.0%
! CTGATTTGATGTGCAGTGTC+TGG - chr5.4:64389893-64389912 None:intergenic 45.0%
!! ATGCTTGGTTTTCTGTTCCC+CGG + chr5.4:64392281-64392300 MS.gene80637:intron 45.0%
!! ATGGTTCCTTTGGGTTGGAT+AGG + chr5.4:64390096-64390115 MS.gene80637:CDS 45.0%
!! GCAACACTGAATTGATGACG+CGG - chr5.4:64393860-64393879 None:intergenic 45.0%
ACACCACCTATCCAACCCAA+AGG - chr5.4:64390105-64390124 None:intergenic 50.0%
AGTTGCGGCAACAGACATGA+TGG - chr5.4:64394386-64394405 None:intergenic 50.0%
ATAAGCCCAGTACCCTGCAA+AGG - chr5.4:64393480-64393499 None:intergenic 50.0%
ATGTGCTTATAGCTCCCGTG+AGG - chr5.4:64394258-64394277 None:intergenic 50.0%
CATACTGCAGAGTCCATGTG+AGG - chr5.4:64391188-64391207 None:intergenic 50.0%
CTGCAAATGTGGTCACGGTA+TGG - chr5.4:64389434-64389453 None:intergenic 50.0%
GCCACAACTTTCACCCAGAT+TGG - chr5.4:64393545-64393564 None:intergenic 50.0%
GCGCGAGATTATAGTGTTCC+TGG + chr5.4:64393175-64393194 MS.gene80637:CDS 50.0%
GGAACACTATAATCTCGCGC+TGG - chr5.4:64393175-64393194 None:intergenic 50.0%
GGAGATTTCATGAGCCTCAC+GGG + chr5.4:64394241-64394260 MS.gene80637:CDS 50.0%
GGCTGTAGCAAAATTCACGC+TGG + chr5.4:64389790-64389809 MS.gene80637:CDS 50.0%
GGGGACCAAAATCGTGAATG+AGG + chr5.4:64393992-64394011 MS.gene80637:intron 50.0%
TCAGCTCTACTGCCATTCCT+TGG + chr5.4:64394220-64394239 MS.gene80637:CDS 50.0%
TGCACACACAAGTCCAGCTA+TGG - chr5.4:64392055-64392074 None:intergenic 50.0%
TGGTTACCTTTGCAGGGTAC+TGG + chr5.4:64393471-64393490 MS.gene80637:CDS 50.0%
! CAGAATCGTAGAGCACTTCG+AGG - chr5.4:64389543-64389562 None:intergenic 50.0%
! GGTTACCTTTGCAGGGTACT+GGG + chr5.4:64393472-64393491 MS.gene80637:CDS 50.0%
! GTGGGGTTTGTGTTGACAAC+GGG + chr5.4:64390033-64390052 MS.gene80637:CDS 50.0%
!! GGTTGGATAGGTGGTGTTGT+TGG + chr5.4:64390108-64390127 MS.gene80637:CDS 50.0%
!! GTTCCTTTGGGTTGGATAGG+TGG + chr5.4:64390099-64390118 MS.gene80637:CDS 50.0%
!! TTTGCAGGGTACTGGGCTTA+TGG + chr5.4:64393479-64393498 MS.gene80637:CDS 50.0%
!! TTTGGCTGGTTCGGCTTTGA+AGG + chr5.4:64391242-64391261 MS.gene80637:CDS 50.0%
CCGCAACTATTGCAGCGCTG+CGG + chr5.4:64394398-64394417 MS.gene80637:CDS 60.0%
CCGCAGCGCTGCAATAGTTG+CGG - chr5.4:64394401-64394420 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 64388783 64394468 64388783 ID=MS.gene80637
chr5.4 mRNA 64388783 64394468 64388783 ID=MS.gene80637.t1;Parent=MS.gene80637
chr5.4 exon 64388783 64388836 64388783 ID=MS.gene80637.t1.exon1;Parent=MS.gene80637.t1
chr5.4 CDS 64388783 64388836 64388783 ID=cds.MS.gene80637.t1;Parent=MS.gene80637.t1
chr5.4 exon 64389776 64389917 64389776 ID=MS.gene80637.t1.exon2;Parent=MS.gene80637.t1
chr5.4 CDS 64389776 64389917 64389776 ID=cds.MS.gene80637.t1;Parent=MS.gene80637.t1
chr5.4 exon 64390019 64390243 64390019 ID=MS.gene80637.t1.exon3;Parent=MS.gene80637.t1
chr5.4 CDS 64390019 64390243 64390019 ID=cds.MS.gene80637.t1;Parent=MS.gene80637.t1
chr5.4 exon 64391169 64391263 64391169 ID=MS.gene80637.t1.exon4;Parent=MS.gene80637.t1
chr5.4 CDS 64391169 64391263 64391169 ID=cds.MS.gene80637.t1;Parent=MS.gene80637.t1
chr5.4 exon 64391997 64392186 64391997 ID=MS.gene80637.t1.exon5;Parent=MS.gene80637.t1
chr5.4 CDS 64391997 64392186 64391997 ID=cds.MS.gene80637.t1;Parent=MS.gene80637.t1
chr5.4 exon 64393161 64393285 64393161 ID=MS.gene80637.t1.exon6;Parent=MS.gene80637.t1
chr5.4 CDS 64393161 64393285 64393161 ID=cds.MS.gene80637.t1;Parent=MS.gene80637.t1
chr5.4 exon 64393389 64393604 64393389 ID=MS.gene80637.t1.exon7;Parent=MS.gene80637.t1
chr5.4 CDS 64393389 64393604 64393389 ID=cds.MS.gene80637.t1;Parent=MS.gene80637.t1
chr5.4 exon 64394091 64394468 64394091 ID=MS.gene80637.t1.exon8;Parent=MS.gene80637.t1
chr5.4 CDS 64394091 64394468 64394091 ID=cds.MS.gene80637.t1;Parent=MS.gene80637.t1
Gene Sequence

>MS.gene80637

ATGAGCGTAAAGAGTCGACTTAAGCTAGTCGTATGTGATGTATCAACTTGTAAGGTTTGTTGAAACCAACAATGTCGATGTATATGAAGAGAGTGGTAAACTGATAATGCATTTTTTTGAACCTGTGTCACCATCATGTAGGATATGCGACTTTTTAGGGTTGTACTTTAGCATTTGTTTGCTTTTGCTATGGTGATGATTCCCAGATAATTTTATTTAGAAGCGAAATGACATCTAAGATATGAGCTTAGAAGTTGAGACACGTCAAAGAAAATTTCACCAAAGGTTCTTCATAAATTTCAAGTTTCAGAGCCATTTGTGTTACATAATCCATGCGTATTCTGGTATATTTCTTTTGTATTTGAGTTTCCACACGTAACTTGTAAGTGCCAGTTGTATGTGATTTTTGACTTTGACTAACAAAGTGAATAGAATAGAAACGATTGATGCAACACAACTTAATGAAATTAAAAAACAATGACTTTTTTTTTTTGTTAGGGAACCAATATGAACACACATAAAAAGTAATTACATCTTCTTTTTTTTTTAAGAAAACAAATCAGTTAACCAAAATCGACATCTAAGAAGAATTAAACACTAATTTTTAAAAGAAGTACACTCCAAAATCTCAAACTATTAATGGTTAATCCATACCGTGACCACATTTGCAGAGTAAAATTGCTATTTCAGTTAAAAGTTAAAAAGAAAACGTAACTAATAAGTCATAACTATCTGGCAAAAGTACAAGTATAACATACCTCGAAGTGCTCTACGATTCTGAAGAACAGAAAAAGTTGTGGGACCCATGATAACCCAATAACAAACAACTACATTGTACAAAACAAAACAATAGCTGCAAGCAATCATCAACAACATAAACAAGTGGAACAAACTACTTATAAAAGATTTGGTTCTTTCATATGCATTACTAGATTCCATGAACAAAATTTTCATTTTCATTTTCAATTTTGATCTTATTTATTTTTCTTGAAGAAAAAAAAAAAGAGGGCTGTAGCAAAATTCACGCTGGCGGTGAAGAACGTTTCTGTTGATGAAGAGGAGCAGATAGAGCTGCTACCTGATGTTGATAACAACGATGTTCAAATTCCAGACACTGCACATCAAATCAGCACTGGTTTGTTTCAATATAATTTTCATGAATGAATTTTGTGTTATTTTTAATTAATTATTATTTTTAATGATTTTCTGTTTTTGTTTTTGTTTTTGTTGTTGTAGATTCATGGTTTCAAGTGGGGTTTGTGTTGACAACGGGAATTAATAGTGCTTATGTTCTTGGATATTCAGGGACCATTATGGTTCCTTTGGGTTGGATAGGTGGTGTTGTTGGTTTGATTCTTGCAACTGCAATTTCACTTTATGCAAATGCTCTTATTGCTATGCTTCATGAATTTGGTGGGACAAGACATATTAGATACCGTGATCTTGCTGGATATATTTATGGTATGTTATTTTATGTTATTCCCCTTGACTAGATTATATCACTGATGTTATGTTTGGATAATCAGCTTAATTGAGTGTTTATAGCATGAGTGCTTATTATTTGAATGATTATGTATAAGTTATTTCTATAACAAAAGATGAAATAAAGTCAAATTGTTTTTGTAAGCTATCCTTGAGAGCTTGTGGAAATTAGCTGAAAACAACTTATGGATATGTCATACTATGTTTCCATGAGCTCTTTCAAACAGTCTCATAAGGGATTATGTTAGTAGATAAGCTCAAATAAGTCAATCTCAATCCAAACAGGTCCTAATTCAAGAACTTGTTGTCAGTGAGTGTCTAGTTTCTTTTCTTATCTTGTAATCGAAGCCATGATATCAAGATTTCTTTATTGAATAAATCAGCTCTTTGGTCATTGAAATTATAAGGGTCGGATGATTTAGTCTTTCAAATTTGCAAAATGACAATTTAGGTCATAGAATTAAAGAATGTCAGTCAATTTATTCACCTTTTTCCAAATTTAACACCATAATTTTGAAGATTCTATGTTTGTTTTGAATGTAACATGAGATTATTCAAAGCAATATGTAGGTAATGAATTGTTTTGTACGGAGATATCTTTTTTCAAGTACTAAATTGACAGACATTATTTTGTTTAAGAGACTAAATTGCTATTTCAAAAATTGAGGGATTAAAAGTTGTCTGAAACTTACAATTCAAGGACAAAAAAGCTCATTTTCTCATATTCTTTTCTTCATGTTTTCGCAAATGCAATTATGATACGACTGTAAGATCTGTATCAGCAATATTGATTAGTATCAAGAATCTGGATGCATGTGTGATCTTAACACGTTGCTTGTCACGTCATTTTGTTGTGCAAATAAGCATATCATAGCTGCTTATGTTTGTTCCATTTTTATTGTAGGTAGAAAAGCATATTGCCTCACATGGACTCTGCAGTATGTCAATCTTTTCATGATAAATATTGGCTACATCATTTTGGCTGGTTCGGCTTTGAAGGTAAAACTATGACATAGAATAATCAACCATAATTACATTATTCTCTTCAGACTTTAGTCATTTCTCTTCTTTAGTTGCAGTACAGAACACTTTTGAAGTCTCGTATAAAAAATTTGAGTAGTTATTTCATTTTTCTGTTTCTCGACTAACCTACTAAGATTTTGGGTCTTGTTTTCTCTGTGTGCTTCCTGTTGACAAGTTATCTACTTCTCCTTTCTGTGACTTCACTAATAATGATACATCAATTGCTCCATTTTTATCAATTCTTGTGTGTCTAGTGTCATGTTAATATGAATTAGCGGTTGCAGAAAACAAGATTAGTAATGAAGACAGTCGAGGTGATAATTTTACATTTTCTGTGTATGTGGTTAAGACGTGTTCAAAGAAGACTTATAGAAAGAATTCAAAGAGATTATATCAAACAGAAATAGTCCAATAAATCAATAATTAGACGTACAAAAATTACCAAAGAAAATATTAAGCAAAAACCTTAAAATTGAGTTGGATTTAAATGATCTGTTACTAGACATGATTCGTGATATGCTATCATAGTGTCATTTGATCCGACCTCATCTAATGGGAAAAGGTTTTGATTATTGTATGAAAACAACAATAATCTTCTGCTGTTTATATTTATCCTCCTGATCTCAATTTGTGCAGTCATCAGATGTTGTTTATACAAATCTTCTGCTTTGAGAAATTTTCTGAATTTTGTTGATTTGTTGTCATGCAGGCTGTTTATGTTCTATTTAGGGATGATGATCAGATGAAGCTTCCACATTTTATTGCCATAGCTGGACTTGTGTGTGCAATGTTTGCCATTTGTATTCCTCATCTTTCAGCTCTTGGAATTTGGCTTGGATTTTCGACGGTCTTAAGCCTCGCATATATTGTCATAGCACTTGTACTGTCACTAAAAGATGGTAATGTCATTTGACTTGTACATCATAGCTACATTTTCATTGACACTTGTTCGATTGATATACTTTTGTGTGAAGAGAATAATGTACATGTTTAATGCTTGGTTTTCTGTTCCCCGGTGCCTCTGTAATTAATTGTTTCTTTGCTTCATGTTCATGTTATTAGAAATTATAGTTAATTCTTTAACTTCAGATAACATCTGAAATTGTTGTTCAGATCTTGCAAGTGTGTCCTATGAGTTTCATCTTTCCTTCTATCTCTGGTCTGAACAATTTTGAACATTTTCATTCATTTTCTCTGCTTACCAAGGAATATAATGTCACACTTTTGTCATTTTGGTCTTCTACTGGTATTTGGAGAAACTGTCATTTGATTTATTGATTAACGATATTTACCTGAAAATATCCTTCTAGTATGTAGTATTTCAGATGATTTTTTTTTTTAATCAATCAGCTGACATTTTGTATACTATATCTTTTAGCGATAACATTTTTGAGCAATATGCATCCCGTATTGTTAGTTTATATTTATATATTCATCAGTTGCTATGTCTTATTGCAAGTGAAAGATTTTTTTTAGAATTATAAACAAGATCTAAACTTACTGATTTATTCATAAATTAACTAGAATACAGTTCAGATCATATTACAGAATTCAATATATTAACTAGAATACAGTTCAGATCATATTACAGAATTCAATATAAGATGATTATTAGTTTCTAGTTTTCTTTAACCTTTCCAAAATTTGTCTTTACCTTGTTGTGAAGGCTATTTTAGGGCTCTAAGCAGTAGATACTTAGACTCGGCTATCGAGTGTCTATTAGCATTCTCCTGACTTCTCTAAATGAATTGACTTCTCTAAACGAGTAATTACTAATTTGCAATGATTGAGAATCACAAAGCTTTATTATCACTACGCTTGGTTAATTCAGTGTGGGATTGCATACTAACCAACATTTCATTATCACTATTAGGAATAAAATCACCAGCGCGAGATTATAGTGTTCCTGGGACATCAACAAGTAAAATATTTACGACAATTGGGGCGTCCGCTAATCTCGTGTTCGCATATAATACAGGAATGCTTCCTGAGATACAGGTATGATTCAAGGTTATATTATTTCTTCTTGGAGTTTTTGTTTGGATTCGTAACATTTCCATTTTTTAAGTAAGTTTTACTCTATTTGGTTGTAACCTAATAGGCGACGATCAGACAACCAGTTGTAAAGAACATGATGAAAGCGCTATATTTTCAGTTTACCGTTGGAGTTCTGCCATTATATCTGGTTACCTTTGCAGGGTACTGGGCTTATGGATCTTCGACACAAACTTTTTTGCTGAATAATGTCAAGGGTCCAATCTGGGTGAAAGTTGTGGCAAATATTACAGCCTTTCTTCAATCGGTCATTGCATTGCATGTAATCACTTCTAAACCAATACTTTGCTGCTTTTAAAATTTAGTTTAGATGTGGTTTTAATCCCCCTTTGTCTCACGATTTTTGGTCCCCTCAGTTTTAAATCCACGATATTGGTCCCTCAATTTTCAAAACGTCTGATATTTTCCCCATCTAAACTTTTGAGGTTGATTTTTTATGATTTGTCAATCAAGTGAGAAACTTACGTGATAGCTGAGGTGATGACATGAAAATGAGTTTTTTAGCGAGATGGGGCCGCGTCATCAATTCAGTGTTGCCATGCAAGCTTTCACCTGTCAAATCATCAAAATTCAGCCTCAAAATGTATAAGTGGAGAAAAGGTTTGTCATTTTAAAAATTAGGAGACTAAAATCGTGAATTTAGATACAGGGGGACCAAAATCGTGAATGAGGTACTGAAATTGAGCCTAAATATTTTATAACTTGAATTTATTTGTTGTACTGATAGCCTCTCTTATGCTTCTGGTAGATATTTGCAAGTCCGATGTACGAGTATTTGGATACCAAACATGGGATTAAAGGGAGTGCTCTAGCTTTTAAGAACTTATCATTTAGAATCTTGGTAAGAGGTGGCTACATGACTTTGAATACATTTGTATCAGCTCTACTGCCATTCCTTGGAGATTTCATGAGCCTCACGGGAGCTATAAGCACATTTCCCCTTACATTTATCCTTGCAAATCATATGTACCTAGTGACAAATAAGAACAAACTAACATCCATTCAAAAGCTTTGGCATTGGATCAACATTTGGTTCTTTGCCATCATGTCTGTTGCCGCAACTATTGCAGCGCTGCGGCTTATTGCTTTAGACTCCAAAACTTATCATGTTTTCGCAGATTTATGA
Protein sequence

>MS.gene80637.t1

MSVKSRLKLVVCDVSTCKKKKKRAVAKFTLAVKNVSVDEEEQIELLPDVDNNDVQIPDTAHQISTDSWFQVGFVLTTGINSAYVLGYSGTIMVPLGWIGGVVGLILATAISLYANALIAMLHEFGGTRHIRYRDLAGYIYGRKAYCLTWTLQYVNLFMINIGYIILAGSALKAVYVLFRDDDQMKLPHFIAIAGLVCAMFAICIPHLSALGIWLGFSTVLSLAYIVIALVLSLKDGIKSPARDYSVPGTSTSKIFTTIGASANLVFAYNTGMLPEIQATIRQPVVKNMMKALYFQFTVGVLPLYLVTFAGYWAYGSSTQTFLLNNVKGPIWVKVVANITAFLQSVIALHIFASPMYEYLDTKHGIKGSALAFKNLSFRILVRGGYMTLNTFVSALLPFLGDFMSLTGAISTFPLTFILANHMYLVTNKNKLTSIQKLWHWINIWFFAIMSVAATIAALRLIALDSKTYHVFADL