Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65428.t1 | XP_013454546.1 | 97.2 | 176 | 5 | 0 | 1 | 176 | 1 | 176 | 2.30E-88 | 335.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65428.t1 | B8AE37 | 62.3 | 175 | 50 | 3 | 15 | 176 | 9 | 180 | 6.5e-47 | 188.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65428.t1 | A0A072UGK4 | 97.2 | 176 | 5 | 0 | 1 | 176 | 1 | 176 | 1.7e-88 | 335.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene65428 | -0.81757 | 3.08E-52 | -1.69E-46 |
| MS.gene050426 | MS.gene65428 | -0.8024 | 5.71E-49 | -1.69E-46 |
| MS.gene052011 | MS.gene65428 | -0.816282 | 5.99E-52 | -1.69E-46 |
| MS.gene052159 | MS.gene65428 | 0.813899 | 2.03E-51 | -1.69E-46 |
| MS.gene053176 | MS.gene65428 | 0.976126 | 3.12E-141 | -1.69E-46 |
| MS.gene054183 | MS.gene65428 | 0.831413 | 1.69E-55 | -1.69E-46 |
| MS.gene054548 | MS.gene65428 | 0.977404 | 1.03E-143 | -1.69E-46 |
| MS.gene054920 | MS.gene65428 | 0.8248 | 6.63E-54 | -1.69E-46 |
| MS.gene05556 | MS.gene65428 | 0.804881 | 1.75E-49 | -1.69E-46 |
| MS.gene056297 | MS.gene65428 | 0.81954 | 1.10E-52 | -1.69E-46 |
| MS.gene059420 | MS.gene65428 | 0.81214 | 4.92E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65428.t1 | MTR_4g007700 | 96.172 | 209 | 8 | 0 | 1 | 209 | 1 | 209 | 2.07e-146 | 405 |
| MS.gene65428.t1 | MTR_4g007700 | 96.739 | 184 | 6 | 0 | 26 | 209 | 12 | 195 | 5.45e-127 | 356 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65428.t1 | AT1G80940 | 66.497 | 197 | 52 | 4 | 2 | 190 | 14 | 204 | 6.19e-79 | 235 |
| MS.gene65428.t1 | AT1G80940 | 84.252 | 127 | 19 | 1 | 65 | 190 | 16 | 142 | 6.64e-70 | 210 |
| MS.gene65428.t1 | AT1G80940 | 60.690 | 145 | 43 | 4 | 2 | 138 | 14 | 152 | 2.24e-48 | 156 |
| MS.gene65428.t1 | AT1G80940 | 52.033 | 123 | 45 | 4 | 2 | 116 | 14 | 130 | 2.20e-30 | 110 |
Find 56 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCTTCATCTCCCACTTCT+TGG | 0.189164 | 4.3:+87770503 | None:intergenic |
| TAACCTTTCTGTTCATTTCT+TGG | 0.189299 | 4.3:+87771002 | None:intergenic |
| CGGCCGTTGCTGTTCTTTAT+AGG | 0.207088 | 4.3:+87771157 | None:intergenic |
| TGCCGAAGTTTCTGAGCTTT+CGG | 0.303182 | 4.3:-87771212 | MS.gene65428:CDS |
| CTGTTCTTTATAGGTTCTAA+TGG | 0.315483 | 4.3:+87771166 | None:intergenic |
| AGGAGTATCTTCCGGGTTGC+CGG | 0.334216 | 4.3:+87771258 | None:intergenic |
| GAGTCCTGCATTTCCACATT+AGG | 0.337528 | 4.3:+87771235 | None:intergenic |
| CATTAGGAGGAGTATCTTCC+GGG | 0.367822 | 4.3:+87771251 | None:intergenic |
| AAAATCTGAGGAGGTGAAAC+AGG | 0.371893 | 4.3:+87773104 | None:intergenic |
| TTCATCTTCAAGGTTCATCT+TGG | 0.411081 | 4.3:+87770482 | None:intergenic |
| TATGGTCATGGATGATGCTT+TGG | 0.425253 | 4.3:-87773138 | MS.gene65428:CDS |
| TATCCAAAGGGATGGCTGAT+TGG | 0.428780 | 4.3:-87771082 | MS.gene65428:CDS |
| TTTCCAATCAGCCATCCCTT+TGG | 0.434651 | 4.3:+87771079 | None:intergenic |
| GGAGTATCTTCCGGGTTGCC+GGG | 0.439882 | 4.3:+87771259 | None:intergenic |
| TTGCAGGATAGAGAAATAGA+TGG | 0.443528 | 4.3:-87770697 | MS.gene65428:intron |
| GTTACAAGAAACTGAGCAAA+TGG | 0.465931 | 4.3:-87770536 | MS.gene65428:CDS |
| TCCTCCTAATGTGGAAATGC+AGG | 0.470382 | 4.3:-87771239 | MS.gene65428:CDS |
| GGCCAAGAAGTGGGAGATGA+AGG | 0.479804 | 4.3:-87770505 | MS.gene65428:CDS |
| TAGTTTGCAGACTCAAAATC+AGG | 0.486553 | 4.3:+87771103 | None:intergenic |
| AGCTAGCGGGAGGAATTTAG+AGG | 0.489631 | 4.3:-87771311 | MS.gene65428:CDS |
| ACATTAGGAGGAGTATCTTC+CGG | 0.492696 | 4.3:+87771250 | None:intergenic |
| AGATGGACTAAACGAACAGC+TGG | 0.507521 | 4.3:-87770680 | MS.gene65428:CDS |
| AGGAAGCAAAGACTCGGCAG+AGG | 0.524151 | 4.3:+87771129 | None:intergenic |
| TGAGCTTTCGGAGCGTCGAA+AGG | 0.531699 | 4.3:-87771200 | MS.gene65428:CDS |
| TCCTGCATTTCCACATTAGG+AGG | 0.532301 | 4.3:+87771238 | None:intergenic |
| TGGAAATCTAGAAAGAGATC+AGG | 0.533990 | 4.3:-87773080 | MS.gene65428:intron |
| GAGTCTGCAAACTATCCAAA+GGG | 0.537534 | 4.3:-87771094 | MS.gene65428:CDS |
| CTAGATTTCCAGAAAATCTG+AGG | 0.541060 | 4.3:+87773092 | None:intergenic |
| ACTGAGCAAATGGCAGATGA+AGG | 0.541063 | 4.3:-87770526 | MS.gene65428:CDS |
| TAAAACACCACCCGGCAACC+CGG | 0.548227 | 4.3:-87771269 | MS.gene65428:CDS |
| GTCATGGATGATGCTTTGGA+TGG | 0.553546 | 4.3:-87773134 | MS.gene65428:CDS |
| AACAGCTGGAGGAGGATTCG+CGG | 0.559765 | 4.3:-87770666 | MS.gene65428:CDS |
| GGAAGATACTCCTCCTAATG+TGG | 0.567411 | 4.3:-87771248 | MS.gene65428:CDS |
| TGAGTCTGCAAACTATCCAA+AGG | 0.573463 | 4.3:-87771095 | MS.gene65428:CDS |
| AAGACTCGGCAGAGGGTCGT+CGG | 0.585384 | 4.3:+87771137 | None:intergenic |
| CTCCGAAAGCTCAGAAACTT+CGG | 0.590975 | 4.3:+87771210 | None:intergenic |
| TGTCCAAGAAATGAACAGAA+AGG | 0.592222 | 4.3:-87771005 | MS.gene65428:intron |
| CTGCAAACTATCCAAAGGGA+TGG | 0.596246 | 4.3:-87771090 | MS.gene65428:CDS |
| ACGTGTTCACCACAGCTAGC+GGG | 0.599138 | 4.3:-87771324 | MS.gene65428:intron |
| GGCAGATGAAGGCCAAGAAG+TGG | 0.599174 | 4.3:-87770515 | MS.gene65428:CDS |
| GCAGACTCAAAATCAGGTGG+AGG | 0.602642 | 4.3:+87771109 | None:intergenic |
| AGGTGGAGGAAGCAAAGACT+CGG | 0.620390 | 4.3:+87771123 | None:intergenic |
| ACTAAACGAACAGCTGGAGG+AGG | 0.624134 | 4.3:-87770674 | MS.gene65428:CDS |
| GCAGATGAAGGCCAAGAAGT+GGG | 0.625863 | 4.3:-87770514 | MS.gene65428:CDS |
| AGGTTCTAATGGTTCAAACA+AGG | 0.637581 | 4.3:+87771177 | None:intergenic |
| GCACTTGCAAGTGCAGCTTG+TGG | 0.640595 | 4.3:-87770635 | MS.gene65428:CDS |
| GGAAGCAAAGACTCGGCAGA+GGG | 0.645207 | 4.3:+87771130 | None:intergenic |
| ATGTGGTCGAAAGCATGCGA+AGG | 0.652930 | 4.3:-87771033 | MS.gene65428:CDS |
| GATACAGCTAAAACACCACC+CGG | 0.658820 | 4.3:-87771277 | MS.gene65428:CDS |
| TGGACTAAACGAACAGCTGG+AGG | 0.659762 | 4.3:-87770677 | MS.gene65428:CDS |
| GTATCTTCCGGGTTGCCGGG+TGG | 0.662272 | 4.3:+87771262 | None:intergenic |
| TTTGCAGACTCAAAATCAGG+TGG | 0.663167 | 4.3:+87771106 | None:intergenic |
| GAACCTATAAAGAACAGCAA+CGG | 0.668853 | 4.3:-87771160 | MS.gene65428:CDS |
| GATTTCCAGAAAATCTGAGG+AGG | 0.685426 | 4.3:+87773095 | None:intergenic |
| AAAGCTTGTCAATGTTGATG+TGG | 0.687893 | 4.3:-87771050 | MS.gene65428:CDS |
| TGTTCACCACAGCTAGCGGG+AGG | 0.700309 | 4.3:-87771321 | MS.gene65428:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTATTTGTAGTATTT+AGG | - | chr4.3:87770802-87770821 | MS.gene65428:intron | 10.0% |
| !! | TAAATACTACAAATAATATA+TGG | + | chr4.3:87770803-87770822 | None:intergenic | 10.0% |
| !!! | CAAAAATAACAATTTTATTA+AGG | + | chr4.3:87771488-87771507 | None:intergenic | 10.0% |
| !! | GATGTAAAATTGAATTATAA+TGG | + | chr4.3:87771795-87771814 | None:intergenic | 15.0% |
| !! | TTACATGAAAATAATAGTAT+TGG | + | chr4.3:87771272-87771291 | None:intergenic | 15.0% |
| !!! | AATATAAAGTATTGTTTTGT+TGG | + | chr4.3:87771441-87771460 | None:intergenic | 15.0% |
| !!! | ATACGTTAGTATAATATTTT+TGG | - | chr4.3:87771119-87771138 | MS.gene65428:CDS | 15.0% |
| !!! | CTTTATTATTTTATCTTGTA+TGG | - | chr4.3:87770748-87770767 | MS.gene65428:intron | 15.0% |
| !! | AAAATTGAAACATTCAGATA+TGG | + | chr4.3:87771739-87771758 | None:intergenic | 20.0% |
| !! | ATACTACAAATAATATATGG+TGG | + | chr4.3:87770800-87770819 | None:intergenic | 20.0% |
| !! | TAAATGAATTGCAAAAAGAA+TGG | - | chr4.3:87772277-87772296 | MS.gene65428:intron | 20.0% |
| !! | TACTACAAATAATATATGGT+GGG | + | chr4.3:87770799-87770818 | None:intergenic | 20.0% |
| !! | TATTATACTAACGTATTGTT+TGG | + | chr4.3:87771115-87771134 | None:intergenic | 20.0% |
| !! | TGGTTACACTTAAATTATTA+CGG | - | chr4.3:87772106-87772125 | MS.gene65428:intron | 20.0% |
| !! | TTTACTATCTCTAAATAAGA+AGG | - | chr4.3:87771995-87772014 | MS.gene65428:intron | 20.0% |
| !!! | AATTGTTATTTTTGTGATCA+TGG | - | chr4.3:87771494-87771513 | MS.gene65428:intron | 20.0% |
| !!! | ATTGAACATATTTTCAATCT+AGG | + | chr4.3:87771228-87771247 | None:intergenic | 20.0% |
| !!! | ATTTGTATGATTTGAAATTG+AGG | - | chr4.3:87770920-87770939 | MS.gene65428:intron | 20.0% |
| !!! | TGAATTTAAGGTTGTTAAAA+AGG | + | chr4.3:87772662-87772681 | None:intergenic | 20.0% |
| ! | ATATGGTAGATGAACAATAA+AGG | + | chr4.3:87771722-87771741 | None:intergenic | 25.0% |
| ! | ATTGAATTTCTTGATGTACA+AGG | - | chr4.3:87771530-87771549 | MS.gene65428:intron | 25.0% |
| ! | CAAGTGGATAAAAAATAAAC+TGG | + | chr4.3:87772788-87772807 | None:intergenic | 25.0% |
| ! | TAAAAGTTGAAGAACAGAAA+AGG | + | chr4.3:87770574-87770593 | None:intergenic | 25.0% |
| ! | TTGAATTTCTTGATGTACAA+GGG | - | chr4.3:87771531-87771550 | MS.gene65428:intron | 25.0% |
| ! | TTTCTCAAGGAAACTTTAAA+GGG | - | chr4.3:87771818-87771837 | MS.gene65428:intron | 25.0% |
| !! | ATTTTACATCTTCTTTCTCA+AGG | - | chr4.3:87771805-87771824 | MS.gene65428:intron | 25.0% |
| !!! | ATTTTCCTTCTTATTTTCTG+TGG | - | chr4.3:87771945-87771964 | MS.gene65428:intron | 25.0% |
| !!! | CATTCTTAGCTTTGAATTTA+AGG | + | chr4.3:87772674-87772693 | None:intergenic | 25.0% |
| !!! | GCTTTATTTGTTATTATGGT+TGG | - | chr4.3:87771085-87771104 | MS.gene65428:CDS | 25.0% |
| !!! | TAACATTTTGTTTTGTAAGC+TGG | - | chr4.3:87770960-87770979 | MS.gene65428:intron | 25.0% |
| AAATAAGAAGGAAGAAAACC+TGG | - | chr4.3:87772007-87772026 | MS.gene65428:intron | 30.0% | |
| AATTTAAGCACGATTAACTG+CGG | + | chr4.3:87771358-87771377 | None:intergenic | 30.0% | |
| AGCTATATTGTTTCCTTTAG+TGG | + | chr4.3:87771851-87771870 | None:intergenic | 30.0% | |
| AGGTTGTTAAAAAGGAAACT+TGG | + | chr4.3:87772654-87772673 | None:intergenic | 30.0% | |
| ATTAAGAAGTCACATATGCA+AGG | + | chr4.3:87771684-87771703 | None:intergenic | 30.0% | |
| CTTTCTCAAGGAAACTTTAA+AGG | - | chr4.3:87771817-87771836 | MS.gene65428:intron | 30.0% | |
| GTACAACACAAAAACTTTCT+AGG | + | chr4.3:87771385-87771404 | None:intergenic | 30.0% | |
| GTGGATAAAAAATAAACTGG+TGG | + | chr4.3:87772785-87772804 | None:intergenic | 30.0% | |
| TAACCTTTCTGTTCATTTCT+TGG | + | chr4.3:87772627-87772646 | None:intergenic | 30.0% | |
| TATCACCACAGAAAATAAGA+AGG | + | chr4.3:87771953-87771972 | None:intergenic | 30.0% | |
| TGAATTTCTTGATGTACAAG+GGG | - | chr4.3:87771532-87771551 | MS.gene65428:intron | 30.0% | |
| ! | ATAGTATTGGACTATTGTGT+TGG | + | chr4.3:87771259-87771278 | None:intergenic | 30.0% |
| ! | CTGTTCTTTATAGGTTCTAA+TGG | + | chr4.3:87772463-87772482 | None:intergenic | 30.0% |
| ! | CTTGTTATGTGTTGAGTTAT+GGG | - | chr4.3:87771597-87771616 | MS.gene65428:intron | 30.0% |
| ! | TCTTGTTATGTGTTGAGTTA+TGG | - | chr4.3:87771596-87771615 | MS.gene65428:intron | 30.0% |
| ! | TGTTGGTTACTTTCATAAAG+AGG | + | chr4.3:87771424-87771443 | None:intergenic | 30.0% |
| !! | AAAAGTGTTGAAAAGAGGTT+TGG | - | chr4.3:87772847-87772866 | MS.gene65428:intron | 30.0% |
| !! | CGCTGCTTTATTTGTTATTA+TGG | - | chr4.3:87771081-87771100 | MS.gene65428:CDS | 30.0% |
| !!! | CAACACTTTTTCTCGTATAT+TGG | + | chr4.3:87772837-87772856 | None:intergenic | 30.0% |
| AAAGCTTGTCAATGTTGATG+TGG | - | chr4.3:87772576-87772595 | MS.gene65428:intron | 35.0% | |
| AAAGGGAGATAAACCACTAA+AGG | - | chr4.3:87771835-87771854 | MS.gene65428:intron | 35.0% | |
| CAACACAAAAACTTTCTAGG+AGG | + | chr4.3:87771382-87771401 | None:intergenic | 35.0% | |
| CTAGATTTCCAGAAAATCTG+AGG | + | chr4.3:87770537-87770556 | None:intergenic | 35.0% | |
| GAACCTATAAAGAACAGCAA+CGG | - | chr4.3:87772466-87772485 | MS.gene65428:intron | 35.0% | |
| GAATTTCTTGATGTACAAGG+GGG | - | chr4.3:87771533-87771552 | MS.gene65428:intron | 35.0% | |
| GCACAAACAATTCAGATTGA+AGG | - | chr4.3:87772046-87772065 | MS.gene65428:intron | 35.0% | |
| GTACAATAGTGGTTAACAGT+TGG | - | chr4.3:87771042-87771061 | MS.gene65428:CDS | 35.0% | |
| GTTACAAGAAACTGAGCAAA+TGG | - | chr4.3:87773090-87773109 | MS.gene65428:CDS | 35.0% | |
| TGGAAATCTAGAAAGAGATC+AGG | - | chr4.3:87770546-87770565 | MS.gene65428:CDS | 35.0% | |
| TGTCCAAGAAATGAACAGAA+AGG | - | chr4.3:87772621-87772640 | MS.gene65428:intron | 35.0% | |
| TTATTCAGTGTAACCAAGAG+AGG | - | chr4.3:87771009-87771028 | MS.gene65428:CDS | 35.0% | |
| TTGCAGGATAGAGAAATAGA+TGG | - | chr4.3:87772929-87772948 | MS.gene65428:intron | 35.0% | |
| ! | AGGTTCTAATGGTTCAAACA+AGG | + | chr4.3:87772452-87772471 | None:intergenic | 35.0% |
| ! | TAGTTTGCAGACTCAAAATC+AGG | + | chr4.3:87772526-87772545 | None:intergenic | 35.0% |
| !! | CGAGAAAAAGTGTTGAAAAG+AGG | - | chr4.3:87772842-87772861 | MS.gene65428:intron | 35.0% |
| AAAATCTGAGGAGGTGAAAC+AGG | + | chr4.3:87770525-87770544 | None:intergenic | 40.0% | |
| AGACTGTTAGAGTCTGCAAT+TGG | + | chr4.3:87772721-87772740 | None:intergenic | 40.0% | |
| ATGCTTCATAGATAGATCCC+TGG | - | chr4.3:87772165-87772184 | MS.gene65428:intron | 40.0% | |
| CATATGCAAGGAAACCAACA+TGG | + | chr4.3:87771672-87771691 | None:intergenic | 40.0% | |
| CGAGTCTTACTAAAGTCAAG+TGG | + | chr4.3:87772804-87772823 | None:intergenic | 40.0% | |
| GAGTCTGCAAACTATCCAAA+GGG | - | chr4.3:87772532-87772551 | MS.gene65428:intron | 40.0% | |
| GATTTCCAGAAAATCTGAGG+AGG | + | chr4.3:87770534-87770553 | None:intergenic | 40.0% | |
| TAAAAACCCATGTGGCTGTT+TGG | - | chr4.3:87771558-87771577 | MS.gene65428:intron | 40.0% | |
| TGAGTCTGCAAACTATCCAA+AGG | - | chr4.3:87772531-87772550 | MS.gene65428:intron | 40.0% | |
| TTTGCAGACTCAAAATCAGG+TGG | + | chr4.3:87772523-87772542 | None:intergenic | 40.0% | |
| ! | CATTTGACGACTTTTGTTGC+AGG | - | chr4.3:87772913-87772932 | MS.gene65428:intron | 40.0% |
| ! | TATTGCTAGCATTTTCCGCA+TGG | - | chr4.3:87772876-87772895 | MS.gene65428:intron | 40.0% |
| ! | TTTCACCTCCTCAGATTTTC+TGG | - | chr4.3:87770526-87770545 | MS.gene65428:CDS | 40.0% |
| !! | ACATTAGGAGGAGTATCTTC+CGG | + | chr4.3:87772379-87772398 | None:intergenic | 40.0% |
| !! | GTGTGTTTGCTATCCAACAT+CGG | - | chr4.3:87772068-87772087 | MS.gene65428:intron | 40.0% |
| !!! | CTCTTTTTTGAACCCTACCA+TGG | + | chr4.3:87772191-87772210 | None:intergenic | 40.0% |
| ACAAACACGACACTGACACA+TGG | + | chr4.3:87772135-87772154 | None:intergenic | 45.0% | |
| ACACTATCCAAACAGCCACA+TGG | + | chr4.3:87771568-87771587 | None:intergenic | 45.0% | |
| ACATGGAGGCTACACTAAAG+AGG | + | chr4.3:87771655-87771674 | None:intergenic | 45.0% | |
| ACTGAGCAAATGGCAGATGA+AGG | - | chr4.3:87773100-87773119 | MS.gene65428:CDS | 45.0% | |
| AGGGGGAATAAAAACCCATG+TGG | - | chr4.3:87771550-87771569 | MS.gene65428:intron | 45.0% | |
| ATGCAAGGAAACCAACATGG+AGG | + | chr4.3:87771669-87771688 | None:intergenic | 45.0% | |
| CACTATCCAAACAGCCACAT+GGG | + | chr4.3:87771567-87771586 | None:intergenic | 45.0% | |
| CATGGAGGCTACACTAAAGA+GGG | + | chr4.3:87771654-87771673 | None:intergenic | 45.0% | |
| CTCCGAAAGCTCAGAAACTT+CGG | + | chr4.3:87772419-87772438 | None:intergenic | 45.0% | |
| CTGCAAACTATCCAAAGGGA+TGG | - | chr4.3:87772536-87772555 | MS.gene65428:intron | 45.0% | |
| CTTTAGTGTAGCCTCCATGT+TGG | - | chr4.3:87771655-87771674 | MS.gene65428:intron | 45.0% | |
| GAGTCCTGCATTTCCACATT+AGG | + | chr4.3:87772394-87772413 | None:intergenic | 45.0% | |
| GATACAGCTAAAACACCACC+CGG | - | chr4.3:87772349-87772368 | MS.gene65428:intron | 45.0% | |
| GCTACATAGAGCTCTATACC+AGG | + | chr4.3:87772028-87772047 | None:intergenic | 45.0% | |
| GGAAGATACTCCTCCTAATG+TGG | - | chr4.3:87772378-87772397 | MS.gene65428:intron | 45.0% | |
| TATCCAAAGGGATGGCTGAT+TGG | - | chr4.3:87772544-87772563 | MS.gene65428:intron | 45.0% | |
| TCCTCCTAATGTGGAAATGC+AGG | - | chr4.3:87772387-87772406 | MS.gene65428:intron | 45.0% | |
| TCCTGCATTTCCACATTAGG+AGG | + | chr4.3:87772391-87772410 | None:intergenic | 45.0% | |
| TGCCGAAGTTTCTGAGCTTT+CGG | - | chr4.3:87772414-87772433 | MS.gene65428:intron | 45.0% | |
| TTTCCAATCAGCCATCCCTT+TGG | + | chr4.3:87772550-87772569 | None:intergenic | 45.0% | |
| ! | AAGAGGTGCAGCACATAAAG+CGG | + | chr4.3:87771407-87771426 | None:intergenic | 45.0% |
| ! | GAGAGAGAAGCGTACAATAG+TGG | - | chr4.3:87771031-87771050 | MS.gene65428:CDS | 45.0% |
| ! | GTCATGGATGATGCTTTGGA+TGG | - | chr4.3:87770492-87770511 | MS.gene65428:CDS | 45.0% |
| ! | GTCGTCAAATGCATTAGCCT+CGG | + | chr4.3:87772904-87772923 | None:intergenic | 45.0% |
| !! | AGATGGACTAAACGAACAGC+TGG | - | chr4.3:87772946-87772965 | MS.gene65428:intron | 45.0% |
| !! | CACTAAAGAGGGTTGGTTGA+AGG | + | chr4.3:87771643-87771662 | None:intergenic | 45.0% |
| !! | CATTAGGAGGAGTATCTTCC+GGG | + | chr4.3:87772378-87772397 | None:intergenic | 45.0% |
| !! | TAAAGAGGGTTGGTTGAAGG+TGG | + | chr4.3:87771640-87771659 | None:intergenic | 45.0% |
| !!! | TTTTTTTATGATAAAAATTT+TGG | + | chr4.3:87771146-87771165 | None:intergenic | 5.0% |
| AACGTGTTCACCACAGCTAG+CGG | - | chr4.3:87772301-87772320 | MS.gene65428:intron | 50.0% | |
| ACTAAACGAACAGCTGGAGG+AGG | - | chr4.3:87772952-87772971 | MS.gene65428:intron | 50.0% | |
| AGCTAGCGGGAGGAATTTAG+AGG | - | chr4.3:87772315-87772334 | MS.gene65428:intron | 50.0% | |
| AGGTGGAGGAAGCAAAGACT+CGG | + | chr4.3:87772506-87772525 | None:intergenic | 50.0% | |
| AGTTATGGGACAGCTAACCC+TGG | - | chr4.3:87771611-87771630 | MS.gene65428:intron | 50.0% | |
| ATAGATCCCTGGCCATGGTA+GGG | - | chr4.3:87772176-87772195 | MS.gene65428:intron | 50.0% | |
| ATCGGCACGACACGATACAT+TGG | - | chr4.3:87772086-87772105 | MS.gene65428:intron | 50.0% | |
| CATAGATAGATCCCTGGCCA+TGG | - | chr4.3:87772171-87772190 | MS.gene65428:intron | 50.0% | |
| GAGGCTACACTAAAGAGGGT+TGG | + | chr4.3:87771650-87771669 | None:intergenic | 50.0% | |
| GCAGACTCAAAATCAGGTGG+AGG | + | chr4.3:87772520-87772539 | None:intergenic | 50.0% | |
| GCAGATGAAGGCCAAGAAGT+GGG | - | chr4.3:87773112-87773131 | MS.gene65428:CDS | 50.0% | |
| TAAATTCCTCCCGCTAGCTG+TGG | + | chr4.3:87772314-87772333 | None:intergenic | 50.0% | |
| TACGCTTCTCTCTCCTCTCT+TGG | + | chr4.3:87771025-87771044 | None:intergenic | 50.0% | |
| TGGACTAAACGAACAGCTGG+AGG | - | chr4.3:87772949-87772968 | MS.gene65428:intron | 50.0% | |
| TTTGAACCCTACCATGGCCA+GGG | + | chr4.3:87772185-87772204 | None:intergenic | 50.0% | |
| ! | ATGTGGTCGAAAGCATGCGA+AGG | - | chr4.3:87772593-87772612 | MS.gene65428:intron | 50.0% |
| ! | CGGCCGTTGCTGTTCTTTAT+AGG | + | chr4.3:87772472-87772491 | None:intergenic | 50.0% |
| ! | TTTTGAACCCTACCATGGCC+AGG | + | chr4.3:87772186-87772205 | None:intergenic | 50.0% |
| AACAGCTGGAGGAGGATTCG+CGG | - | chr4.3:87772960-87772979 | MS.gene65428:intron | 55.0% | |
| ACGTGTTCACCACAGCTAGC+GGG | - | chr4.3:87772302-87772321 | MS.gene65428:intron | 55.0% | |
| AGGAAGCAAAGACTCGGCAG+AGG | + | chr4.3:87772500-87772519 | None:intergenic | 55.0% | |
| GATAGATCCCTGGCCATGGT+AGG | - | chr4.3:87772175-87772194 | MS.gene65428:intron | 55.0% | |
| GCACTTGCAAGTGCAGCTTG+TGG | - | chr4.3:87772991-87773010 | MS.gene65428:intron | 55.0% | |
| GGAAGCAAAGACTCGGCAGA+GGG | + | chr4.3:87772499-87772518 | None:intergenic | 55.0% | |
| GGCAGATGAAGGCCAAGAAG+TGG | - | chr4.3:87773111-87773130 | MS.gene65428:CDS | 55.0% | |
| GGCCAAGAAGTGGGAGATGA+AGG | - | chr4.3:87773121-87773140 | MS.gene65428:CDS | 55.0% | |
| GGCCTTCATCTCCCACTTCT+TGG | + | chr4.3:87773126-87773145 | None:intergenic | 55.0% | |
| TAAAACACCACCCGGCAACC+CGG | - | chr4.3:87772357-87772376 | MS.gene65428:intron | 55.0% | |
| TTGGTTGAAGGTGGAGGCCA+GGG | + | chr4.3:87771631-87771650 | None:intergenic | 55.0% | |
| ! | GCATTAGCCTCGGTTCCATG+CGG | + | chr4.3:87772894-87772913 | None:intergenic | 55.0% |
| ! | GCATTTTCCGCATGGAACCG+AGG | - | chr4.3:87772884-87772903 | MS.gene65428:intron | 55.0% |
| ! | GTATCGTGTCGTGCCGATGT+TGG | + | chr4.3:87772084-87772103 | None:intergenic | 55.0% |
| !! | AGAGGGTTGGTTGAAGGTGG+AGG | + | chr4.3:87771637-87771656 | None:intergenic | 55.0% |
| !! | AGGAGTATCTTCCGGGTTGC+CGG | + | chr4.3:87772371-87772390 | None:intergenic | 55.0% |
| !! | TGAGCTTTCGGAGCGTCGAA+AGG | - | chr4.3:87772426-87772445 | MS.gene65428:intron | 55.0% |
| AAGACTCGGCAGAGGGTCGT+CGG | + | chr4.3:87772492-87772511 | None:intergenic | 60.0% | |
| GTTGGTTGAAGGTGGAGGCC+AGG | + | chr4.3:87771632-87771651 | None:intergenic | 60.0% | |
| TGTTCACCACAGCTAGCGGG+AGG | - | chr4.3:87772305-87772324 | MS.gene65428:intron | 60.0% | |
| ! | GGAGTATCTTCCGGGTTGCC+GGG | + | chr4.3:87772370-87772389 | None:intergenic | 60.0% |
| GTATCTTCCGGGTTGCCGGG+TGG | + | chr4.3:87772367-87772386 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 87770489 | 87773159 | 87770489 | ID=MS.gene65428 |
| chr4.3 | mRNA | 87770489 | 87773159 | 87770489 | ID=MS.gene65428.t1;Parent=MS.gene65428 |
| chr4.3 | exon | 87773081 | 87773159 | 87773081 | ID=MS.gene65428.t1.exon1;Parent=MS.gene65428.t1 |
| chr4.3 | CDS | 87773081 | 87773159 | 87773081 | ID=cds.MS.gene65428.t1;Parent=MS.gene65428.t1 |
| chr4.3 | exon | 87771006 | 87771331 | 87771006 | ID=MS.gene65428.t1.exon2;Parent=MS.gene65428.t1 |
| chr4.3 | CDS | 87771006 | 87771331 | 87771006 | ID=cds.MS.gene65428.t1;Parent=MS.gene65428.t1 |
| chr4.3 | exon | 87770489 | 87770713 | 87770489 | ID=MS.gene65428.t1.exon3;Parent=MS.gene65428.t1 |
| chr4.3 | CDS | 87770489 | 87770713 | 87770489 | ID=cds.MS.gene65428.t1;Parent=MS.gene65428.t1 |
| Gene Sequence |
| Protein sequence |
