Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053176.t1 | XP_013454546.1 | 97.2 | 176 | 5 | 0 | 1 | 176 | 1 | 176 | 2.30E-88 | 335.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053176.t1 | B8AE37 | 62.3 | 175 | 50 | 3 | 15 | 176 | 9 | 180 | 6.5e-47 | 188.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053176.t1 | A0A072UGK4 | 97.2 | 176 | 5 | 0 | 1 | 176 | 1 | 176 | 1.7e-88 | 335.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene053176 | -0.804355 | 2.25E-49 | -1.69E-46 |
| MS.gene050426 | MS.gene053176 | -0.801094 | 1.06E-48 | -1.69E-46 |
| MS.gene052011 | MS.gene053176 | -0.822009 | 2.98E-53 | -1.69E-46 |
| MS.gene052159 | MS.gene053176 | 0.803735 | 3.02E-49 | -1.69E-46 |
| MS.gene053176 | MS.gene054183 | 0.845084 | 5.06E-59 | -1.69E-46 |
| MS.gene053176 | MS.gene054548 | 0.990196 | 1.68E-181 | -1.69E-46 |
| MS.gene053176 | MS.gene054920 | 0.811331 | 7.39E-51 | -1.69E-46 |
| MS.gene053176 | MS.gene055701 | 0.807745 | 4.35E-50 | -1.69E-46 |
| MS.gene053176 | MS.gene056297 | 0.833757 | 4.44E-56 | -1.69E-46 |
| MS.gene053176 | MS.gene059609 | 0.813619 | 2.34E-51 | -1.69E-46 |
| MS.gene053176 | MS.gene061114 | -0.81361 | 2.35E-51 | -1.69E-46 |
| MS.gene053176 | MS.gene061506 | 0.839442 | 1.58E-57 | -1.69E-46 |
| MS.gene053176 | MS.gene062852 | 0.820573 | 6.39E-53 | -1.69E-46 |
| MS.gene053176 | MS.gene065011 | 0.841001 | 6.19E-58 | -1.69E-46 |
| MS.gene053176 | MS.gene065350 | -0.838526 | 2.73E-57 | -1.69E-46 |
| MS.gene053176 | MS.gene066830 | -0.817715 | 2.86E-52 | -1.69E-46 |
| MS.gene053176 | MS.gene069689 | -0.812269 | 4.62E-51 | -1.69E-46 |
| MS.gene053176 | MS.gene07137 | 0.805293 | 1.43E-49 | -1.69E-46 |
| MS.gene053176 | MS.gene07139 | 0.830784 | 2.42E-55 | -1.69E-46 |
| MS.gene053176 | MS.gene072189 | 0.811647 | 6.31E-51 | -1.69E-46 |
| MS.gene053176 | MS.gene072375 | -0.807353 | 5.27E-50 | -1.69E-46 |
| MS.gene053176 | MS.gene072659 | -0.83043 | 2.95E-55 | -1.69E-46 |
| MS.gene053176 | MS.gene074393 | -0.805864 | 1.09E-49 | -1.69E-46 |
| MS.gene053176 | MS.gene07615 | 0.802216 | 6.23E-49 | -1.69E-46 |
| MS.gene053176 | MS.gene07617 | 0.802862 | 4.59E-49 | -1.69E-46 |
| MS.gene053176 | MS.gene07621 | 0.804294 | 2.31E-49 | -1.69E-46 |
| MS.gene053176 | MS.gene08779 | 0.825988 | 3.47E-54 | -1.69E-46 |
| MS.gene053176 | MS.gene08906 | 0.823694 | 1.21E-53 | -1.69E-46 |
| MS.gene053176 | MS.gene08908 | 0.824139 | 9.49E-54 | -1.69E-46 |
| MS.gene053176 | MS.gene08932 | 0.859588 | 3.73E-63 | -1.69E-46 |
| MS.gene053176 | MS.gene09310 | 0.825748 | 3.96E-54 | -1.69E-46 |
| MS.gene053176 | MS.gene20556 | 0.808489 | 3.02E-50 | -1.69E-46 |
| MS.gene053176 | MS.gene20653 | 0.802871 | 4.57E-49 | -1.69E-46 |
| MS.gene053176 | MS.gene22251 | 0.80035 | 1.50E-48 | -1.69E-46 |
| MS.gene053176 | MS.gene24742 | 0.823166 | 1.60E-53 | -1.69E-46 |
| MS.gene053176 | MS.gene25913 | -0.803624 | 3.19E-49 | -1.69E-46 |
| MS.gene053176 | MS.gene28532 | 0.817289 | 3.56E-52 | -1.69E-46 |
| MS.gene053176 | MS.gene28853 | -0.844996 | 5.35E-59 | -1.69E-46 |
| MS.gene053176 | MS.gene30475 | 0.838711 | 2.44E-57 | -1.69E-46 |
| MS.gene053176 | MS.gene31790 | 0.803624 | 3.19E-49 | -1.69E-46 |
| MS.gene053176 | MS.gene33198 | 0.812583 | 3.94E-51 | -1.69E-46 |
| MS.gene053176 | MS.gene39064 | 0.807178 | 5.74E-50 | -1.69E-46 |
| MS.gene053176 | MS.gene39685 | 0.812188 | 4.81E-51 | -1.69E-46 |
| MS.gene053176 | MS.gene40678 | 0.842345 | 2.74E-58 | -1.69E-46 |
| MS.gene053176 | MS.gene41333 | -0.829323 | 5.49E-55 | -1.69E-46 |
| MS.gene053176 | MS.gene41713 | 0.80573 | 1.16E-49 | -1.69E-46 |
| MS.gene053176 | MS.gene42548 | 0.824688 | 7.05E-54 | -1.69E-46 |
| MS.gene053176 | MS.gene44474 | -0.803088 | 4.12E-49 | -1.69E-46 |
| MS.gene053176 | MS.gene50330 | 0.805484 | 1.31E-49 | -1.69E-46 |
| MS.gene053176 | MS.gene51389 | 0.807507 | 4.89E-50 | -1.69E-46 |
| MS.gene053176 | MS.gene52997 | 0.804443 | 2.15E-49 | -1.69E-46 |
| MS.gene053176 | MS.gene54659 | 0.820868 | 5.46E-53 | -1.69E-46 |
| MS.gene053176 | MS.gene60206 | 0.801283 | 9.69E-49 | -1.69E-46 |
| MS.gene053176 | MS.gene60286 | 0.830943 | 2.21E-55 | -1.69E-46 |
| MS.gene053176 | MS.gene61547 | -0.818549 | 1.85E-52 | -1.69E-46 |
| MS.gene053176 | MS.gene64910 | 0.830836 | 2.35E-55 | -1.69E-46 |
| MS.gene053176 | MS.gene65428 | 0.976126 | 3.12E-141 | -1.69E-46 |
| MS.gene053176 | MS.gene68339 | 0.885306 | 9.11E-72 | -1.69E-46 |
| MS.gene053176 | MS.gene70077 | 0.801421 | 9.08E-49 | -1.69E-46 |
| MS.gene053176 | MS.gene70368 | 0.817046 | 4.04E-52 | -1.69E-46 |
| MS.gene053176 | MS.gene74594 | 0.805449 | 1.33E-49 | -1.69E-46 |
| MS.gene053176 | MS.gene74803 | 0.814329 | 1.63E-51 | -1.69E-46 |
| MS.gene053176 | MS.gene75598 | -0.814991 | 1.16E-51 | -1.69E-46 |
| MS.gene053176 | MS.gene78643 | 0.824816 | 6.58E-54 | -1.69E-46 |
| MS.gene053176 | MS.gene79024 | 0.806701 | 7.24E-50 | -1.69E-46 |
| MS.gene053176 | MS.gene80082 | 0.825294 | 5.07E-54 | -1.69E-46 |
| MS.gene053176 | MS.gene81245 | 0.804278 | 2.33E-49 | -1.69E-46 |
| MS.gene053176 | MS.gene82521 | 0.827429 | 1.57E-54 | -1.69E-46 |
| MS.gene053176 | MS.gene82533 | 0.813629 | 2.32E-51 | -1.69E-46 |
| MS.gene053176 | MS.gene83012 | -0.810337 | 1.21E-50 | -1.69E-46 |
| MS.gene053176 | MS.gene85276 | -0.82006 | 8.37E-53 | -1.69E-46 |
| MS.gene053176 | MS.gene86331 | 0.831359 | 1.75E-55 | -1.69E-46 |
| MS.gene053176 | MS.gene86351 | -0.820307 | 7.35E-53 | -1.69E-46 |
| MS.gene053176 | MS.gene87570 | 0.837719 | 4.40E-57 | -1.69E-46 |
| MS.gene053176 | MS.gene87631 | 0.818674 | 1.73E-52 | -1.69E-46 |
| MS.gene053176 | MS.gene88672 | -0.801168 | 1.02E-48 | -1.69E-46 |
| MS.gene053176 | MS.gene88707 | -0.838536 | 2.71E-57 | -1.69E-46 |
| MS.gene053176 | MS.gene89062 | -0.82032 | 7.30E-53 | -1.69E-46 |
| MS.gene053176 | MS.gene91428 | 0.836635 | 8.34E-57 | -1.69E-46 |
| MS.gene053176 | MS.gene92106 | 0.815816 | 7.61E-52 | -1.69E-46 |
| MS.gene053176 | MS.gene93869 | 0.822861 | 1.89E-53 | -1.69E-46 |
| MS.gene053176 | MS.gene94682 | 0.801669 | 8.07E-49 | -1.69E-46 |
| MS.gene053176 | MS.gene95377 | 0.827527 | 1.49E-54 | -1.69E-46 |
| MS.gene053176 | MS.gene96111 | 0.844389 | 7.80E-59 | -1.69E-46 |
| MS.gene053176 | MS.gene97211 | 0.817169 | 3.79E-52 | -1.69E-46 |
| MS.gene053176 | MS.gene99638 | 0.82895 | 6.76E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053176.t1 | MTR_4g007700 | 96.172 | 209 | 8 | 0 | 1 | 209 | 1 | 209 | 2.07e-146 | 405 |
| MS.gene053176.t1 | MTR_4g007700 | 96.739 | 184 | 6 | 0 | 26 | 209 | 12 | 195 | 5.45e-127 | 356 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053176.t1 | AT1G80940 | 66.497 | 197 | 52 | 4 | 2 | 190 | 14 | 204 | 6.19e-79 | 235 |
| MS.gene053176.t1 | AT1G80940 | 84.252 | 127 | 19 | 1 | 65 | 190 | 16 | 142 | 6.64e-70 | 210 |
| MS.gene053176.t1 | AT1G80940 | 60.690 | 145 | 43 | 4 | 2 | 138 | 14 | 152 | 2.24e-48 | 156 |
| MS.gene053176.t1 | AT1G80940 | 52.033 | 123 | 45 | 4 | 2 | 116 | 14 | 130 | 2.20e-30 | 110 |
Find 56 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCTTCATCTCCCACTTCT+TGG | 0.189164 | 4.2:+92135138 | None:intergenic |
| TAACCTTTCTGTTCATTTCT+TGG | 0.189299 | 4.2:+92135637 | None:intergenic |
| CGGCCGTTGCTGTTCTTTAT+AGG | 0.207088 | 4.2:+92135792 | None:intergenic |
| TGCCGAAGTTTCTGAGCTTT+CGG | 0.303182 | 4.2:-92135847 | MS.gene053176:CDS |
| CTGTTCTTTATAGGTTCTAA+TGG | 0.315483 | 4.2:+92135801 | None:intergenic |
| AGGAGTATCTTCCGGGTTGC+CGG | 0.334216 | 4.2:+92135893 | None:intergenic |
| GAGTCCTGCATTTCCACATT+AGG | 0.337528 | 4.2:+92135870 | None:intergenic |
| CATTAGGAGGAGTATCTTCC+GGG | 0.367822 | 4.2:+92135886 | None:intergenic |
| AAAATCTGAGGAGGTGAAAC+AGG | 0.371893 | 4.2:+92137781 | None:intergenic |
| TTCATCTTCAAGGTTCATCT+TGG | 0.411081 | 4.2:+92135117 | None:intergenic |
| TATGGTCATGGATGATGCTT+TGG | 0.425253 | 4.2:-92137815 | MS.gene053176:CDS |
| TATCCAAAGGGATGGCTGAT+TGG | 0.428780 | 4.2:-92135717 | MS.gene053176:CDS |
| TTTCCAATCAGCCATCCCTT+TGG | 0.434651 | 4.2:+92135714 | None:intergenic |
| GGAGTATCTTCCGGGTTGCC+GGG | 0.439882 | 4.2:+92135894 | None:intergenic |
| TTGCAGGATAGAGAAATAGA+TGG | 0.443528 | 4.2:-92135332 | MS.gene053176:intron |
| GTTACAAGAAACTGAGCAAA+TGG | 0.465931 | 4.2:-92135171 | MS.gene053176:CDS |
| TCCTCCTAATGTGGAAATGC+AGG | 0.470382 | 4.2:-92135874 | MS.gene053176:CDS |
| GGCCAAGAAGTGGGAGATGA+AGG | 0.479804 | 4.2:-92135140 | MS.gene053176:CDS |
| TAGTTTGCAGACTCAAAATC+AGG | 0.486553 | 4.2:+92135738 | None:intergenic |
| AGCTAGCGGGAGGAATTTAG+AGG | 0.489631 | 4.2:-92135946 | MS.gene053176:CDS |
| ACATTAGGAGGAGTATCTTC+CGG | 0.492696 | 4.2:+92135885 | None:intergenic |
| AGATGGACTAAACGAACAGC+TGG | 0.507521 | 4.2:-92135315 | MS.gene053176:CDS |
| AGGAAGCAAAGACTCGGCAG+AGG | 0.524151 | 4.2:+92135764 | None:intergenic |
| TGAGCTTTCGGAGCGTCGAA+AGG | 0.531699 | 4.2:-92135835 | MS.gene053176:CDS |
| TCCTGCATTTCCACATTAGG+AGG | 0.532301 | 4.2:+92135873 | None:intergenic |
| TGGAAATCTAGAAAGAGATC+AGG | 0.533990 | 4.2:-92137757 | MS.gene053176:intron |
| GAGTCTGCAAACTATCCAAA+GGG | 0.537534 | 4.2:-92135729 | MS.gene053176:CDS |
| CTAGATTTCCAGAAAATCTG+AGG | 0.541060 | 4.2:+92137769 | None:intergenic |
| ACTGAGCAAATGGCAGATGA+AGG | 0.541063 | 4.2:-92135161 | MS.gene053176:CDS |
| TAAAACACCACCCGGCAACC+CGG | 0.548227 | 4.2:-92135904 | MS.gene053176:CDS |
| GTCATGGATGATGCTTTGGA+TGG | 0.553546 | 4.2:-92137811 | MS.gene053176:CDS |
| AACAGCTGGAGGAGGATTCG+CGG | 0.559765 | 4.2:-92135301 | MS.gene053176:CDS |
| GGAAGATACTCCTCCTAATG+TGG | 0.567411 | 4.2:-92135883 | MS.gene053176:CDS |
| TGAGTCTGCAAACTATCCAA+AGG | 0.573463 | 4.2:-92135730 | MS.gene053176:CDS |
| AAGACTCGGCAGAGGGTCGT+CGG | 0.585384 | 4.2:+92135772 | None:intergenic |
| CTCCGAAAGCTCAGAAACTT+CGG | 0.590975 | 4.2:+92135845 | None:intergenic |
| TGTCCAAGAAATGAACAGAA+AGG | 0.592222 | 4.2:-92135640 | MS.gene053176:intron |
| CTGCAAACTATCCAAAGGGA+TGG | 0.596246 | 4.2:-92135725 | MS.gene053176:CDS |
| ACGTGTTCACCACAGCTAGC+GGG | 0.599138 | 4.2:-92135959 | MS.gene053176:intron |
| GGCAGATGAAGGCCAAGAAG+TGG | 0.599174 | 4.2:-92135150 | MS.gene053176:CDS |
| GCAGACTCAAAATCAGGTGG+AGG | 0.602642 | 4.2:+92135744 | None:intergenic |
| AGGTGGAGGAAGCAAAGACT+CGG | 0.620390 | 4.2:+92135758 | None:intergenic |
| ACTAAACGAACAGCTGGAGG+AGG | 0.624134 | 4.2:-92135309 | MS.gene053176:CDS |
| GCAGATGAAGGCCAAGAAGT+GGG | 0.625863 | 4.2:-92135149 | MS.gene053176:CDS |
| AGGTTCTAATGGTTCAAACA+AGG | 0.637581 | 4.2:+92135812 | None:intergenic |
| GCACTTGCAAGTGCAGCTTG+TGG | 0.640595 | 4.2:-92135270 | MS.gene053176:CDS |
| GGAAGCAAAGACTCGGCAGA+GGG | 0.645207 | 4.2:+92135765 | None:intergenic |
| ATGTGGTCGAAAGCATGCGA+AGG | 0.652930 | 4.2:-92135668 | MS.gene053176:CDS |
| GATACAGCTAAAACACCACC+CGG | 0.658820 | 4.2:-92135912 | MS.gene053176:CDS |
| TGGACTAAACGAACAGCTGG+AGG | 0.659762 | 4.2:-92135312 | MS.gene053176:CDS |
| GTATCTTCCGGGTTGCCGGG+TGG | 0.662272 | 4.2:+92135897 | None:intergenic |
| TTTGCAGACTCAAAATCAGG+TGG | 0.663167 | 4.2:+92135741 | None:intergenic |
| GAACCTATAAAGAACAGCAA+CGG | 0.668853 | 4.2:-92135795 | MS.gene053176:CDS |
| GATTTCCAGAAAATCTGAGG+AGG | 0.685426 | 4.2:+92137772 | None:intergenic |
| AAAGCTTGTCAATGTTGATG+TGG | 0.687893 | 4.2:-92135685 | MS.gene053176:CDS |
| TGTTCACCACAGCTAGCGGG+AGG | 0.700309 | 4.2:-92135956 | MS.gene053176:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTATTTGTAGTATTT+AGG | - | chr4.2:92135429-92135448 | MS.gene053176:intron | 10.0% |
| !! | TAAATACTACAAATAATATA+TGG | + | chr4.2:92135430-92135449 | None:intergenic | 10.0% |
| !!! | CAAAAATAACAATTTTATTA+AGG | + | chr4.2:92136116-92136135 | None:intergenic | 10.0% |
| !! | AAAATTGAAACATTCATATA+TGG | + | chr4.2:92136367-92136386 | None:intergenic | 15.0% |
| !! | GATGTAAAATTGAATTATAA+TGG | + | chr4.2:92136423-92136442 | None:intergenic | 15.0% |
| !! | TTACATGAAAATAATAGTAT+TGG | + | chr4.2:92135899-92135918 | None:intergenic | 15.0% |
| !! | TTCAATGATTATTATAACTA+TGG | + | chr4.2:92136742-92136761 | None:intergenic | 15.0% |
| !!! | AATATAAAGTATTGTTTTGT+TGG | + | chr4.2:92136068-92136087 | None:intergenic | 15.0% |
| !!! | ATACGTTAGTATAATATTTT+TGG | - | chr4.2:92135746-92135765 | MS.gene053176:CDS | 15.0% |
| !!! | CTTTATTATTTTATCTTGTA+TGG | - | chr4.2:92135375-92135394 | MS.gene053176:intron | 15.0% |
| !! | ATACTACAAATAATATATGG+TGG | + | chr4.2:92135427-92135446 | None:intergenic | 20.0% |
| !! | ATTAAATTTCTTGATGTACA+AGG | - | chr4.2:92136158-92136177 | MS.gene053176:intron | 20.0% |
| !! | TAAATGAATTGCAAAAAGAA+TGG | - | chr4.2:92136954-92136973 | MS.gene053176:intron | 20.0% |
| !! | TACTACAAATAATATATGGT+GGG | + | chr4.2:92135426-92135445 | None:intergenic | 20.0% |
| !! | TATTATACTAACGTATTGTT+TGG | + | chr4.2:92135742-92135761 | None:intergenic | 20.0% |
| !! | TTAAATTTCTTGATGTACAA+GGG | - | chr4.2:92136159-92136178 | MS.gene053176:intron | 20.0% |
| !!! | AATTGTTATTTTTGTGATCA+TGG | - | chr4.2:92136122-92136141 | MS.gene053176:intron | 20.0% |
| !!! | ATTGAACATATTTTCAATCT+AGG | + | chr4.2:92135855-92135874 | None:intergenic | 20.0% |
| !!! | ATTTGTATGATTTGAAATTG+AGG | - | chr4.2:92135547-92135566 | MS.gene053176:intron | 20.0% |
| !!! | ATTTTACATCTTCTTTTTCA+AGG | - | chr4.2:92136433-92136452 | MS.gene053176:intron | 20.0% |
| !!! | TGAATTTAAGGTTGTTAAAA+AGG | + | chr4.2:92137339-92137358 | None:intergenic | 20.0% |
| !!! | TTTTTCAAGGAAACTTAAAT+GGG | - | chr4.2:92136446-92136465 | MS.gene053176:intron | 20.0% |
| ! | AATTTAAGCACGATTAACTT+CGG | + | chr4.2:92135985-92136004 | None:intergenic | 25.0% |
| ! | ATATGGTAGATGAACAATAA+AGG | + | chr4.2:92136350-92136369 | None:intergenic | 25.0% |
| ! | CAAGTGGATAAAAAATAAAC+TGG | + | chr4.2:92137465-92137484 | None:intergenic | 25.0% |
| ! | TAAAAGTTGAAGAACAGAAA+AGG | + | chr4.2:92135209-92135228 | None:intergenic | 25.0% |
| ! | TAAATTTCTTGATGTACAAG+GGG | - | chr4.2:92136160-92136179 | MS.gene053176:intron | 25.0% |
| !!! | CATTCTTAGCTTTGAATTTA+AGG | + | chr4.2:92137351-92137370 | None:intergenic | 25.0% |
| !!! | CTTTTTCAAGGAAACTTAAA+TGG | - | chr4.2:92136445-92136464 | MS.gene053176:intron | 25.0% |
| !!! | GCTTTATTTGTTATTATGGT+TGG | - | chr4.2:92135712-92135731 | MS.gene053176:CDS | 25.0% |
| !!! | TAACATTTTGTTTTGTAAGC+TGG | - | chr4.2:92135587-92135606 | MS.gene053176:intron | 25.0% |
| AAATTTCTTGATGTACAAGG+GGG | - | chr4.2:92136161-92136180 | MS.gene053176:intron | 30.0% | |
| AGGTTGTTAAAAAGGAAACT+TGG | + | chr4.2:92137331-92137350 | None:intergenic | 30.0% | |
| ATTAAGAAGTCACATATGCA+AGG | + | chr4.2:92136312-92136331 | None:intergenic | 30.0% | |
| ATTGGATACTGAAATTTGGA+AGG | + | chr4.2:92136629-92136648 | None:intergenic | 30.0% | |
| GTGGATAAAAAATAAACTGG+TGG | + | chr4.2:92137462-92137481 | None:intergenic | 30.0% | |
| TAACCTTTCTGTTCATTTCT+TGG | + | chr4.2:92137304-92137323 | None:intergenic | 30.0% | |
| TACCATTGGATACTGAAATT+TGG | + | chr4.2:92136633-92136652 | None:intergenic | 30.0% | |
| TTCCAAATTTCAGTATCCAA+TGG | - | chr4.2:92136628-92136647 | MS.gene053176:intron | 30.0% | |
| TTGGATACTGAAATTTGGAA+GGG | + | chr4.2:92136628-92136647 | None:intergenic | 30.0% | |
| ! | ATAGTATTGGACTATTGTGT+TGG | + | chr4.2:92135886-92135905 | None:intergenic | 30.0% |
| ! | CTGTTCTTTATAGGTTCTAA+TGG | + | chr4.2:92137140-92137159 | None:intergenic | 30.0% |
| ! | CTTGTTATGTGTTGAGTTAT+GGG | - | chr4.2:92136225-92136244 | MS.gene053176:intron | 30.0% |
| ! | TCTTGTTATGTGTTGAGTTA+TGG | - | chr4.2:92136224-92136243 | MS.gene053176:intron | 30.0% |
| !! | AAAAGTGTTGAAAAGAGGTT+TGG | - | chr4.2:92137524-92137543 | MS.gene053176:intron | 30.0% |
| !! | CGCTGCTTTATTTGTTATTA+TGG | - | chr4.2:92135708-92135727 | MS.gene053176:CDS | 30.0% |
| !!! | CAACACTTTTTCTCGTATAT+TGG | + | chr4.2:92137514-92137533 | None:intergenic | 30.0% |
| AAAGCTTGTCAATGTTGATG+TGG | - | chr4.2:92137253-92137272 | MS.gene053176:intron | 35.0% | |
| AATGGGAGATGAATCACTAA+AGG | - | chr4.2:92136463-92136482 | MS.gene053176:intron | 35.0% | |
| CAACACAAAAACTTTCTAGG+TGG | + | chr4.2:92136009-92136028 | None:intergenic | 35.0% | |
| CTAGATTTCCAGAAAATCTG+AGG | + | chr4.2:92135172-92135191 | None:intergenic | 35.0% | |
| GAACCTATAAAGAACAGCAA+CGG | - | chr4.2:92137143-92137162 | MS.gene053176:intron | 35.0% | |
| GCAGAATGAACTTTGAATTG+TGG | - | chr4.2:92136597-92136616 | MS.gene053176:intron | 35.0% | |
| GTACAATAGTGGTTAACAGT+TGG | - | chr4.2:92135669-92135688 | MS.gene053176:CDS | 35.0% | |
| GTGCAACACAAAAACTTTCT+AGG | + | chr4.2:92136012-92136031 | None:intergenic | 35.0% | |
| GTTACAAGAAACTGAGCAAA+TGG | - | chr4.2:92137767-92137786 | MS.gene053176:CDS | 35.0% | |
| GTTCATTCTGCTAAGTTCAA+AGG | + | chr4.2:92136588-92136607 | None:intergenic | 35.0% | |
| TGGAAATCTAGAAAGAGATC+AGG | - | chr4.2:92135181-92135200 | MS.gene053176:CDS | 35.0% | |
| TGTCCAAGAAATGAACAGAA+AGG | - | chr4.2:92137298-92137317 | MS.gene053176:intron | 35.0% | |
| TTATTCAGTGTAACCAAGAG+AGG | - | chr4.2:92135636-92135655 | MS.gene053176:intron | 35.0% | |
| TTGCAGGATAGAGAAATAGA+TGG | - | chr4.2:92137606-92137625 | MS.gene053176:intron | 35.0% | |
| ! | AGGTTCTAATGGTTCAAACA+AGG | + | chr4.2:92137129-92137148 | None:intergenic | 35.0% |
| ! | TAGTTTGCAGACTCAAAATC+AGG | + | chr4.2:92137203-92137222 | None:intergenic | 35.0% |
| ! | TCAATAAGCTCTGATACCAT+TGG | + | chr4.2:92136647-92136666 | None:intergenic | 35.0% |
| ! | TGTTGGTTACTTTCACAAAG+AGG | + | chr4.2:92136051-92136070 | None:intergenic | 35.0% |
| !! | CGAGAAAAAGTGTTGAAAAG+AGG | - | chr4.2:92137519-92137538 | MS.gene053176:intron | 35.0% |
| !!! | TCTTTTTTTGAACCCTACCA+TGG | + | chr4.2:92136867-92136886 | None:intergenic | 35.0% |
| AAAATCTGAGGAGGTGAAAC+AGG | + | chr4.2:92135160-92135179 | None:intergenic | 40.0% | |
| AGACTGTTAGAGTCTGCAAT+TGG | + | chr4.2:92137398-92137417 | None:intergenic | 40.0% | |
| ATGCTTCATAGATAGATCCC+TGG | - | chr4.2:92136841-92136860 | MS.gene053176:intron | 40.0% | |
| CATATGCAAGGAAACCAACA+TGG | + | chr4.2:92136300-92136319 | None:intergenic | 40.0% | |
| CGAGTCTTACTAAAGTCAAG+TGG | + | chr4.2:92137481-92137500 | None:intergenic | 40.0% | |
| CTAAGTTCAAAGGCAGTTCA+AGG | + | chr4.2:92136578-92136597 | None:intergenic | 40.0% | |
| GAGTCTGCAAACTATCCAAA+GGG | - | chr4.2:92137209-92137228 | MS.gene053176:intron | 40.0% | |
| GATTTCCAGAAAATCTGAGG+AGG | + | chr4.2:92135169-92135188 | None:intergenic | 40.0% | |
| TAAAAACCCATGTGGCTGTT+TGG | - | chr4.2:92136186-92136205 | MS.gene053176:intron | 40.0% | |
| TGAGTCTGCAAACTATCCAA+AGG | - | chr4.2:92137208-92137227 | MS.gene053176:intron | 40.0% | |
| TTTGCAGACTCAAAATCAGG+TGG | + | chr4.2:92137200-92137219 | None:intergenic | 40.0% | |
| ! | AAGAGGTGCAACACATAAAG+CGG | + | chr4.2:92136034-92136053 | None:intergenic | 40.0% |
| ! | CATTTGACGACTTTTGTTGC+AGG | - | chr4.2:92137590-92137609 | MS.gene053176:intron | 40.0% |
| ! | TATTGCTAGCATTTTCCGCA+TGG | - | chr4.2:92137553-92137572 | MS.gene053176:intron | 40.0% |
| ! | TTTCACCTCCTCAGATTTTC+TGG | - | chr4.2:92135161-92135180 | MS.gene053176:CDS | 40.0% |
| !! | ACATTAGGAGGAGTATCTTC+CGG | + | chr4.2:92137056-92137075 | None:intergenic | 40.0% |
| ACACTATCCAAACAGCCACA+TGG | + | chr4.2:92136196-92136215 | None:intergenic | 45.0% | |
| ACATGGAGGCTACACTAAAG+AGG | + | chr4.2:92136283-92136302 | None:intergenic | 45.0% | |
| ACTGAGCAAATGGCAGATGA+AGG | - | chr4.2:92137777-92137796 | MS.gene053176:CDS | 45.0% | |
| AGGGGGAATAAAAACCCATG+TGG | - | chr4.2:92136178-92136197 | MS.gene053176:intron | 45.0% | |
| AGTTATGGGACAGCTAATCC+TGG | - | chr4.2:92136239-92136258 | MS.gene053176:intron | 45.0% | |
| ATGCAAGGAAACCAACATGG+AGG | + | chr4.2:92136297-92136316 | None:intergenic | 45.0% | |
| CACTATCCAAACAGCCACAT+GGG | + | chr4.2:92136195-92136214 | None:intergenic | 45.0% | |
| CATGGAGGCTACACTAAAGA+GGG | + | chr4.2:92136282-92136301 | None:intergenic | 45.0% | |
| CTCCGAAAGCTCAGAAACTT+CGG | + | chr4.2:92137096-92137115 | None:intergenic | 45.0% | |
| CTGCAAACTATCCAAAGGGA+TGG | - | chr4.2:92137213-92137232 | MS.gene053176:intron | 45.0% | |
| CTTTAGTGTAGCCTCCATGT+TGG | - | chr4.2:92136283-92136302 | MS.gene053176:intron | 45.0% | |
| GAGTCCTGCATTTCCACATT+AGG | + | chr4.2:92137071-92137090 | None:intergenic | 45.0% | |
| GATACAGCTAAAACACCACC+CGG | - | chr4.2:92137026-92137045 | MS.gene053176:intron | 45.0% | |
| GGAAGATACTCCTCCTAATG+TGG | - | chr4.2:92137055-92137074 | MS.gene053176:intron | 45.0% | |
| TATCCAAAGGGATGGCTGAT+TGG | - | chr4.2:92137221-92137240 | MS.gene053176:intron | 45.0% | |
| TCCTCCTAATGTGGAAATGC+AGG | - | chr4.2:92137064-92137083 | MS.gene053176:intron | 45.0% | |
| TCCTGCATTTCCACATTAGG+AGG | + | chr4.2:92137068-92137087 | None:intergenic | 45.0% | |
| TGCCGAAGTTTCTGAGCTTT+CGG | - | chr4.2:92137091-92137110 | MS.gene053176:intron | 45.0% | |
| TTTCCAATCAGCCATCCCTT+TGG | + | chr4.2:92137227-92137246 | None:intergenic | 45.0% | |
| ! | GAGAGAGAAGCGTACAATAG+TGG | - | chr4.2:92135658-92135677 | MS.gene053176:CDS | 45.0% |
| ! | GTCATGGATGATGCTTTGGA+TGG | - | chr4.2:92135127-92135146 | MS.gene053176:CDS | 45.0% |
| ! | GTCGTCAAATGCATTAGCCT+CGG | + | chr4.2:92137581-92137600 | None:intergenic | 45.0% |
| !! | AGATGGACTAAACGAACAGC+TGG | - | chr4.2:92137623-92137642 | MS.gene053176:intron | 45.0% |
| !! | CACTAAAGAGGGTTGGTTGA+AGG | + | chr4.2:92136271-92136290 | None:intergenic | 45.0% |
| !! | CATTAGGAGGAGTATCTTCC+GGG | + | chr4.2:92137055-92137074 | None:intergenic | 45.0% |
| !! | TAAAGAGGGTTGGTTGAAGG+TGG | + | chr4.2:92136268-92136287 | None:intergenic | 45.0% |
| !!! | TTTTTTTATGATAAAAATTT+TGG | + | chr4.2:92135773-92135792 | None:intergenic | 5.0% |
| AACGTGTTCACCACAGCTAG+CGG | - | chr4.2:92136978-92136997 | MS.gene053176:intron | 50.0% | |
| ACTAAACGAACAGCTGGAGG+AGG | - | chr4.2:92137629-92137648 | MS.gene053176:intron | 50.0% | |
| AGCTAGCGGGAGGAATTTAG+AGG | - | chr4.2:92136992-92137011 | MS.gene053176:intron | 50.0% | |
| AGGTGGAGGAAGCAAAGACT+CGG | + | chr4.2:92137183-92137202 | None:intergenic | 50.0% | |
| ATAGATCCCTGGCCATGGTA+GGG | - | chr4.2:92136852-92136871 | MS.gene053176:intron | 50.0% | |
| CATAGATAGATCCCTGGCCA+TGG | - | chr4.2:92136847-92136866 | MS.gene053176:intron | 50.0% | |
| GAGGCTACACTAAAGAGGGT+TGG | + | chr4.2:92136278-92136297 | None:intergenic | 50.0% | |
| GCAGACTCAAAATCAGGTGG+AGG | + | chr4.2:92137197-92137216 | None:intergenic | 50.0% | |
| GCAGATGAAGGCCAAGAAGT+GGG | - | chr4.2:92137789-92137808 | MS.gene053176:CDS | 50.0% | |
| TAAATTCCTCCCGCTAGCTG+TGG | + | chr4.2:92136991-92137010 | None:intergenic | 50.0% | |
| TACGCTTCTCTCTCCTCTCT+TGG | + | chr4.2:92135652-92135671 | None:intergenic | 50.0% | |
| TGGACTAAACGAACAGCTGG+AGG | - | chr4.2:92137626-92137645 | MS.gene053176:intron | 50.0% | |
| TTTGAACCCTACCATGGCCA+GGG | + | chr4.2:92136861-92136880 | None:intergenic | 50.0% | |
| ! | ATGTGGTCGAAAGCATGCGA+AGG | - | chr4.2:92137270-92137289 | MS.gene053176:intron | 50.0% |
| ! | CGGCCGTTGCTGTTCTTTAT+AGG | + | chr4.2:92137149-92137168 | None:intergenic | 50.0% |
| ! | TTTTGAACCCTACCATGGCC+AGG | + | chr4.2:92136862-92136881 | None:intergenic | 50.0% |
| AACAGCTGGAGGAGGATTCG+CGG | - | chr4.2:92137637-92137656 | MS.gene053176:intron | 55.0% | |
| ACGTGTTCACCACAGCTAGC+GGG | - | chr4.2:92136979-92136998 | MS.gene053176:intron | 55.0% | |
| AGGAAGCAAAGACTCGGCAG+AGG | + | chr4.2:92137177-92137196 | None:intergenic | 55.0% | |
| GATAGATCCCTGGCCATGGT+AGG | - | chr4.2:92136851-92136870 | MS.gene053176:intron | 55.0% | |
| GCACTTGCAAGTGCAGCTTG+TGG | - | chr4.2:92137668-92137687 | MS.gene053176:intron | 55.0% | |
| GGAAGCAAAGACTCGGCAGA+GGG | + | chr4.2:92137176-92137195 | None:intergenic | 55.0% | |
| GGCAGATGAAGGCCAAGAAG+TGG | - | chr4.2:92137788-92137807 | MS.gene053176:CDS | 55.0% | |
| GGCCAAGAAGTGGGAGATGA+AGG | - | chr4.2:92137798-92137817 | MS.gene053176:CDS | 55.0% | |
| GGCCTTCATCTCCCACTTCT+TGG | + | chr4.2:92137803-92137822 | None:intergenic | 55.0% | |
| TAAAACACCACCCGGCAACC+CGG | - | chr4.2:92137034-92137053 | MS.gene053176:intron | 55.0% | |
| ! | GCATTAGCCTCGGTTCCATG+CGG | + | chr4.2:92137571-92137590 | None:intergenic | 55.0% |
| ! | GCATTTTCCGCATGGAACCG+AGG | - | chr4.2:92137561-92137580 | MS.gene053176:intron | 55.0% |
| !! | AGAGGGTTGGTTGAAGGTGG+AGG | + | chr4.2:92136265-92136284 | None:intergenic | 55.0% |
| !! | AGGAGTATCTTCCGGGTTGC+CGG | + | chr4.2:92137048-92137067 | None:intergenic | 55.0% |
| !! | TGAGCTTTCGGAGCGTCGAA+AGG | - | chr4.2:92137103-92137122 | MS.gene053176:intron | 55.0% |
| AAGACTCGGCAGAGGGTCGT+CGG | + | chr4.2:92137169-92137188 | None:intergenic | 60.0% | |
| GTTGGTTGAAGGTGGAGGCC+AGG | + | chr4.2:92136260-92136279 | None:intergenic | 60.0% | |
| TGTTCACCACAGCTAGCGGG+AGG | - | chr4.2:92136982-92137001 | MS.gene053176:intron | 60.0% | |
| ! | GGAGTATCTTCCGGGTTGCC+GGG | + | chr4.2:92137047-92137066 | None:intergenic | 60.0% |
| GTATCTTCCGGGTTGCCGGG+TGG | + | chr4.2:92137044-92137063 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 92135124 | 92137836 | 92135124 | ID=MS.gene053176 |
| chr4.2 | mRNA | 92135124 | 92137836 | 92135124 | ID=MS.gene053176.t1;Parent=MS.gene053176 |
| chr4.2 | exon | 92137758 | 92137836 | 92137758 | ID=MS.gene053176.t1.exon1;Parent=MS.gene053176.t1 |
| chr4.2 | CDS | 92137758 | 92137836 | 92137758 | ID=cds.MS.gene053176.t1;Parent=MS.gene053176.t1 |
| chr4.2 | exon | 92135641 | 92135966 | 92135641 | ID=MS.gene053176.t1.exon2;Parent=MS.gene053176.t1 |
| chr4.2 | CDS | 92135641 | 92135966 | 92135641 | ID=cds.MS.gene053176.t1;Parent=MS.gene053176.t1 |
| chr4.2 | exon | 92135124 | 92135348 | 92135124 | ID=MS.gene053176.t1.exon3;Parent=MS.gene053176.t1 |
| chr4.2 | CDS | 92135124 | 92135348 | 92135124 | ID=cds.MS.gene053176.t1;Parent=MS.gene053176.t1 |
| Gene Sequence |
| Protein sequence |
