Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056297.t1 | RHN82564.1 | 97.4 | 389 | 10 | 0 | 175 | 563 | 60 | 448 | 5.80E-211 | 743.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056297.t1 | Q5RC80 | 42.2 | 393 | 187 | 9 | 181 | 562 | 149 | 512 | 9.5e-69 | 262.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056297.t1 | A0A396JZD2 | 97.4 | 389 | 10 | 0 | 175 | 563 | 60 | 448 | 4.2e-211 | 743.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050787 | MS.gene056297 | 0.805566 | 1.25E-49 | -1.69E-46 |
| MS.gene052011 | MS.gene056297 | -0.842868 | 1.99E-58 | -1.69E-46 |
| MS.gene053176 | MS.gene056297 | 0.833757 | 4.44E-56 | -1.69E-46 |
| MS.gene054183 | MS.gene056297 | 0.81798 | 2.49E-52 | -1.69E-46 |
| MS.gene054548 | MS.gene056297 | 0.82437 | 8.37E-54 | -1.69E-46 |
| MS.gene054920 | MS.gene056297 | 0.800805 | 1.21E-48 | -1.69E-46 |
| MS.gene055488 | MS.gene056297 | -0.811015 | 8.65E-51 | -1.69E-46 |
| MS.gene056297 | MS.gene061114 | -0.812729 | 3.66E-51 | -1.69E-46 |
| MS.gene056297 | MS.gene062852 | 0.822674 | 2.09E-53 | -1.69E-46 |
| MS.gene056297 | MS.gene065011 | 0.902893 | 6.08E-79 | -1.69E-46 |
| MS.gene056297 | MS.gene066435 | 0.803671 | 3.12E-49 | -1.69E-46 |
| MS.gene056297 | MS.gene069068 | 0.807724 | 4.40E-50 | -1.69E-46 |
| MS.gene056297 | MS.gene069862 | 0.807382 | 5.19E-50 | -1.69E-46 |
| MS.gene056297 | MS.gene069868 | -0.805886 | 1.07E-49 | -1.69E-46 |
| MS.gene056297 | MS.gene072584 | 0.814423 | 1.55E-51 | -1.69E-46 |
| MS.gene056297 | MS.gene072659 | -0.80188 | 7.31E-49 | -1.69E-46 |
| MS.gene056297 | MS.gene20653 | 0.806053 | 9.92E-50 | -1.69E-46 |
| MS.gene056297 | MS.gene28853 | -0.801341 | 9.43E-49 | -1.69E-46 |
| MS.gene056297 | MS.gene44474 | -0.802928 | 4.45E-49 | -1.69E-46 |
| MS.gene056297 | MS.gene45084 | 0.811469 | 6.89E-51 | -1.69E-46 |
| MS.gene056297 | MS.gene49846 | 0.808335 | 3.26E-50 | -1.69E-46 |
| MS.gene056297 | MS.gene52885 | 0.804956 | 1.68E-49 | -1.69E-46 |
| MS.gene056297 | MS.gene54659 | 0.804075 | 2.57E-49 | -1.69E-46 |
| MS.gene056297 | MS.gene61547 | -0.805375 | 1.38E-49 | -1.69E-46 |
| MS.gene056297 | MS.gene65428 | 0.81954 | 1.10E-52 | -1.69E-46 |
| MS.gene056297 | MS.gene68339 | 0.839854 | 1.24E-57 | -1.69E-46 |
| MS.gene056297 | MS.gene72988 | 0.833118 | 6.41E-56 | -1.69E-46 |
| MS.gene056297 | MS.gene75039 | 0.825522 | 4.48E-54 | -1.69E-46 |
| MS.gene056297 | MS.gene76533 | -0.806472 | 8.09E-50 | -1.69E-46 |
| MS.gene056297 | MS.gene77445 | -0.821462 | 3.99E-53 | -1.69E-46 |
| MS.gene056297 | MS.gene81245 | 0.801677 | 8.04E-49 | -1.69E-46 |
| MS.gene056297 | MS.gene83012 | -0.810597 | 1.07E-50 | -1.69E-46 |
| MS.gene056297 | MS.gene85276 | -0.83404 | 3.77E-56 | -1.69E-46 |
| MS.gene056297 | MS.gene87384 | 0.801539 | 8.59E-49 | -1.69E-46 |
| MS.gene056297 | MS.gene89017 | 0.810945 | 8.96E-51 | -1.69E-46 |
| MS.gene056297 | MS.gene92106 | 0.81142 | 7.06E-51 | -1.69E-46 |
| MS.gene056297 | MS.gene93500 | 0.809583 | 1.76E-50 | -1.69E-46 |
| MS.gene056297 | MS.gene95707 | 0.804111 | 2.53E-49 | -1.69E-46 |
| MS.gene056297 | MS.gene96111 | 0.825693 | 4.08E-54 | -1.69E-46 |
| MS.gene056297 | MS.gene97211 | 0.811 | 8.71E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056297 | MS.gene023498 | PPI |
| MS.gene09281 | MS.gene056297 | PPI |
| MS.gene056297 | MS.gene54070 | PPI |
| MS.gene08963 | MS.gene056297 | PPI |
| MS.gene08808 | MS.gene056297 | PPI |
| MS.gene056297 | MS.gene015893 | PPI |
| MS.gene021573 | MS.gene056297 | PPI |
| MS.gene86296 | MS.gene056297 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056297.t1 | MTR_8g092550 | 51.565 | 607 | 206 | 17 | 1 | 561 | 1 | 565 | 0.0 | 525 |
| MS.gene056297.t1 | MTR_3g095230 | 64.179 | 402 | 131 | 7 | 161 | 559 | 192 | 583 | 1.16e-177 | 514 |
| MS.gene056297.t1 | MTR_3g095230 | 64.631 | 393 | 126 | 7 | 161 | 550 | 192 | 574 | 1.88e-174 | 506 |
| MS.gene056297.t1 | MTR_7g094660 | 23.438 | 256 | 168 | 8 | 148 | 395 | 612 | 847 | 2.99e-12 | 70.1 |
| MS.gene056297.t1 | MTR_6g040190 | 30.464 | 151 | 87 | 3 | 196 | 345 | 36 | 169 | 5.97e-12 | 68.9 |
| MS.gene056297.t1 | MTR_7g096260 | 24.066 | 241 | 163 | 8 | 171 | 403 | 471 | 699 | 2.03e-11 | 67.4 |
| MS.gene056297.t1 | MTR_7g096260 | 24.066 | 241 | 163 | 8 | 171 | 403 | 485 | 713 | 2.37e-11 | 67.0 |
| MS.gene056297.t1 | MTR_1g020080 | 28.333 | 180 | 119 | 6 | 186 | 362 | 191 | 363 | 4.48e-11 | 65.5 |
| MS.gene056297.t1 | MTR_4g085540 | 26.036 | 169 | 106 | 3 | 186 | 352 | 35 | 186 | 6.78e-11 | 65.5 |
| MS.gene056297.t1 | MTR_1g019150 | 25.146 | 171 | 110 | 2 | 176 | 345 | 23 | 176 | 6.92e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056297.t1 | AT2G16940 | 55.479 | 584 | 214 | 11 | 1 | 563 | 1 | 559 | 0.0 | 538 |
| MS.gene056297.t1 | AT2G16940 | 54.006 | 624 | 210 | 13 | 1 | 563 | 1 | 608 | 0.0 | 536 |
| MS.gene056297.t1 | AT2G16940 | 54.369 | 618 | 206 | 15 | 1 | 563 | 1 | 597 | 0.0 | 532 |
| MS.gene056297.t1 | AT2G16940 | 68.949 | 409 | 108 | 6 | 164 | 563 | 20 | 418 | 0.0 | 527 |
| MS.gene056297.t1 | AT2G16940 | 68.949 | 409 | 108 | 6 | 164 | 563 | 20 | 418 | 0.0 | 527 |
| MS.gene056297.t1 | AT5G09880 | 52.500 | 560 | 224 | 12 | 1 | 556 | 1 | 522 | 4.44e-167 | 485 |
| MS.gene056297.t1 | AT4G27000 | 30.435 | 184 | 120 | 4 | 181 | 362 | 169 | 346 | 4.09e-14 | 75.1 |
| MS.gene056297.t1 | AT1G48920 | 29.609 | 179 | 114 | 6 | 185 | 356 | 297 | 470 | 1.42e-13 | 73.9 |
| MS.gene056297.t1 | AT5G54900 | 26.562 | 192 | 134 | 3 | 173 | 362 | 142 | 328 | 2.10e-13 | 72.4 |
| MS.gene056297.t1 | AT4G34110 | 28.994 | 169 | 101 | 3 | 186 | 352 | 37 | 188 | 7.72e-13 | 71.6 |
| MS.gene056297.t1 | AT4G19610 | 24.123 | 228 | 156 | 5 | 177 | 397 | 593 | 810 | 2.91e-12 | 70.1 |
| MS.gene056297.t1 | AT4G26650 | 29.341 | 167 | 112 | 4 | 175 | 336 | 2 | 167 | 6.14e-11 | 65.1 |
| MS.gene056297.t1 | AT4G26650 | 29.341 | 167 | 112 | 4 | 175 | 336 | 5 | 170 | 6.64e-11 | 65.1 |
| MS.gene056297.t1 | AT1G11650 | 25.140 | 179 | 127 | 3 | 186 | 362 | 156 | 329 | 9.35e-11 | 64.3 |
Find 150 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAATTTAGGCCCTTATTC+TGG | 0.109164 | 1.3:-76559054 | MS.gene056297:CDS |
| AATGATCACTGCAAGCTTTA+TGG | 0.131084 | 1.3:-76554479 | MS.gene056297:intron |
| CAGCGAAGCAAAAGCATTTC+TGG | 0.156469 | 1.3:-76563907 | MS.gene056297:CDS |
| AAGAACTGTGTTTGCTTATC+AGG | 0.185609 | 1.3:-76560975 | MS.gene056297:intron |
| ACAGTTCTTTGATCTCTTTC+AGG | 0.242899 | 1.3:+76560989 | None:intergenic |
| GCGAGATGTTCGGTTGATTA+TGG | 0.243482 | 1.3:-76560361 | MS.gene056297:CDS |
| TTCCCATTGCTTGTAGATTA+AGG | 0.251379 | 1.3:+76555002 | None:intergenic |
| CCAAGAACTCATTTGCTATC+TGG | 0.252789 | 1.3:+76554331 | None:intergenic |
| CTTTCAGGTCAACCTCTTCT+TGG | 0.289755 | 1.3:-76559156 | MS.gene056297:CDS |
| TTGCAGTATGGTTGGTTTGC+TGG | 0.290107 | 1.3:-76555050 | MS.gene056297:intron |
| GGAATCGATCCTCGTATAAC+TGG | 0.293028 | 1.3:+76554353 | None:intergenic |
| GAAGCAGAATGCTCCAAGTT+TGG | 0.294926 | 1.3:-76554703 | MS.gene056297:CDS |
| ATTGGGCATTGCAAAGGTTT+TGG | 0.296396 | 1.3:-76558665 | MS.gene056297:CDS |
| CCCATGGCAATAGCGCTTTC+AGG | 0.304225 | 1.3:-76559171 | MS.gene056297:CDS |
| GAAATTTAGGCCCTTATTCT+GGG | 0.320135 | 1.3:-76559053 | MS.gene056297:CDS |
| AGGAATGGCAAGGGACTTAA+AGG | 0.323597 | 1.3:-76563824 | MS.gene056297:CDS |
| GGTTCAACATAGAAGTTCTA+AGG | 0.324971 | 1.3:-76564064 | MS.gene056297:CDS |
| TCTGTTGCTAACGGGCCTTC+TGG | 0.328512 | 1.3:-76559075 | MS.gene056297:CDS |
| CCACCTGGCATTCCAACTCC+TGG | 0.330402 | 1.3:+76554950 | None:intergenic |
| CAGACGGCATAAAGAGAAAA+AGG | 0.339356 | 1.3:-76561038 | MS.gene056297:CDS |
| GAAGGAACTAGACTTTGATT+TGG | 0.341411 | 1.3:-76554743 | MS.gene056297:CDS |
| GTTTAGGTGTTTGAAGCATT+TGG | 0.350751 | 1.3:-76558722 | MS.gene056297:intron |
| AAGCAGAATGCTCCAAGTTT+GGG | 0.375980 | 1.3:-76554702 | MS.gene056297:CDS |
| CAAGAATTCGGCGGAAATAC+TGG | 0.377273 | 1.3:-76556358 | MS.gene056297:CDS |
| GAAAGAGATAGAAGGAATCA+AGG | 0.379739 | 1.3:-76563961 | MS.gene056297:CDS |
| AACGGGCCTTCTGGAAATTT+AGG | 0.380199 | 1.3:-76559066 | MS.gene056297:CDS |
| AAGATCAGCTTCAGTAATAC+TGG | 0.384484 | 1.3:+76558996 | None:intergenic |
| GTTCTTCTCGTCGTCGTTCA+CGG | 0.386174 | 1.3:-76564110 | MS.gene056297:CDS |
| CTGTGCACTTATTGCAGATT+GGG | 0.394110 | 1.3:+76554534 | None:intergenic |
| CAAGAACTCATTTGCTATCT+GGG | 0.400356 | 1.3:+76554332 | None:intergenic |
| TCCGATGGCTTCACCATCAC+TGG | 0.400948 | 1.3:+76559129 | None:intergenic |
| TTACATGGAAGATGGTTTGC+AGG | 0.407022 | 1.3:-76554505 | MS.gene056297:CDS |
| TGCTCGGGAAGAGGCATTCA+AGG | 0.409408 | 1.3:+76555183 | None:intergenic |
| GTTAAAGAATATGTTTGATC+CGG | 0.411016 | 1.3:-76554858 | MS.gene056297:CDS |
| TGCAGTATGGTTGGTTTGCT+GGG | 0.416126 | 1.3:-76555049 | MS.gene056297:intron |
| TTGAATAGCCAGTTGGAGAT+TGG | 0.425004 | 1.3:-76557903 | MS.gene056297:CDS |
| CACCTGGCATTCCAACTCCT+GGG | 0.427701 | 1.3:+76554951 | None:intergenic |
| ATGGGGATAGGAAGAGAGAC+AGG | 0.428494 | 1.3:-76564038 | MS.gene056297:CDS |
| ATAGAAGTTCTAAGGGCAAT+GGG | 0.429828 | 1.3:-76564056 | MS.gene056297:CDS |
| ACGGTGAAGAGAAGCATAGA+AGG | 0.435659 | 1.3:-76564008 | MS.gene056297:CDS |
| TCTCTTTCAGGATCAATCTC+AGG | 0.446666 | 1.3:+76561001 | None:intergenic |
| ACCCCAGGAGTTGGAATGCC+AGG | 0.447356 | 1.3:-76554953 | MS.gene056297:CDS |
| TTCTATCTCTTTCAACATCC+CGG | 0.447920 | 1.3:+76563971 | None:intergenic |
| CAATGTCATCAAGAGGCATC+TGG | 0.449507 | 1.3:+76558684 | None:intergenic |
| ATTTCCAGGTGCGAGATGTT+CGG | 0.451143 | 1.3:-76560371 | MS.gene056297:intron |
| TCAAGACGTTCTAAAGGTGT+TGG | 0.457560 | 1.3:-76560330 | MS.gene056297:CDS |
| GTAAATAGAGATGGAGAAAG+AGG | 0.459538 | 1.3:-76563844 | MS.gene056297:CDS |
| AGATGCCTCTTGATGACATT+GGG | 0.460702 | 1.3:-76558682 | MS.gene056297:CDS |
| TCCTCCCACCAATCTCCAAC+TGG | 0.461997 | 1.3:+76557895 | None:intergenic |
| AATTCTGTTGTCAACAATAC+AGG | 0.465091 | 1.3:-76555025 | MS.gene056297:CDS |
| ATAGAGAGATGAGTCGTGAC+AGG | 0.465228 | 1.3:-76563867 | MS.gene056297:CDS |
| GACTTGTCAGCATTTGAACT+TGG | 0.465269 | 1.3:+76554921 | None:intergenic |
| GCTGTGCACTTATTGCAGAT+TGG | 0.469463 | 1.3:+76554533 | None:intergenic |
| TGCAAACCATCTTCCATGTA+AGG | 0.469787 | 1.3:+76554507 | None:intergenic |
| CAATCTGGAATGCAAGAATT+CGG | 0.473861 | 1.3:-76556370 | MS.gene056297:CDS |
| CAAGACGTTCTAAAGGTGTT+GGG | 0.475156 | 1.3:-76560329 | MS.gene056297:intron |
| CTTATTCCCACCCCAGGAGT+TGG | 0.477168 | 1.3:-76554962 | MS.gene056297:CDS |
| TCAGCTGTTACTGATCAATC+TGG | 0.478932 | 1.3:-76556385 | MS.gene056297:CDS |
| CTACAGCATCTGTTGCTAAC+GGG | 0.479490 | 1.3:-76559083 | MS.gene056297:CDS |
| GGCCTTAATCTACAAGCAAT+GGG | 0.483020 | 1.3:-76555004 | MS.gene056297:CDS |
| AGCATTACTCATGCAGAAGT+TGG | 0.485791 | 1.3:-76555164 | MS.gene056297:CDS |
| AAATCTTAAGTAGACAAATC+CGG | 0.486003 | 1.3:+76554564 | None:intergenic |
| ATCGGAAGCAGAAAAGAATC+TGG | 0.487315 | 1.3:-76559112 | MS.gene056297:CDS |
| GCGCCGATTGTATCAATAGT+AGG | 0.495158 | 1.3:+76554899 | None:intergenic |
| AGTGCACAGCGGGCCTTACA+TGG | 0.497162 | 1.3:-76554520 | MS.gene056297:CDS |
| CATGAGTAATGCTCGGGAAG+AGG | 0.500452 | 1.3:+76555174 | None:intergenic |
| ATCTGCAATAAGTGCACAGC+GGG | 0.503256 | 1.3:-76554530 | MS.gene056297:CDS |
| TATGAGTTCTTCTCAAGGGC+TGG | 0.503681 | 1.3:-76560835 | MS.gene056297:CDS |
| ACCTGAAAGCGCTATTGCCA+TGG | 0.505680 | 1.3:+76559170 | None:intergenic |
| ATGATGATGATGTTGATCAT+TGG | 0.505715 | 1.3:-76564158 | MS.gene056297:CDS |
| CAAAATTCTGAACCTAAGAA+TGG | 0.508101 | 1.3:-76564234 | MS.gene056297:CDS |
| AGGAACCAGATAGAGAAAAC+AGG | 0.508947 | 1.3:-76563804 | MS.gene056297:intron |
| AGGCCTTAATCTACAAGCAA+TGG | 0.510829 | 1.3:-76555005 | MS.gene056297:CDS |
| GTTCTAAGGGCAATGGGGAT+AGG | 0.513112 | 1.3:-76564050 | MS.gene056297:CDS |
| TTCACAGATTTCTCTTAAAG+CGG | 0.516431 | 1.3:-76560872 | MS.gene056297:intron |
| AATAGCCAGTTGGAGATTGG+TGG | 0.519548 | 1.3:-76557900 | MS.gene056297:CDS |
| AGCGGGCCTTACATGGAAGA+TGG | 0.519802 | 1.3:-76554513 | MS.gene056297:CDS |
| AAAGAGATAGAAGGAATCAA+GGG | 0.520589 | 1.3:-76563960 | MS.gene056297:CDS |
| TGGCATTCCAACTCCTGGGG+TGG | 0.521399 | 1.3:+76554955 | None:intergenic |
| GAAGGGAGAGAGACAGAGAC+CGG | 0.523936 | 1.3:-76563990 | MS.gene056297:CDS |
| TCTGTGAGCAGGAGGAGTGC+CGG | 0.524448 | 1.3:-76554583 | MS.gene056297:intron |
| TGATGATGAAGGTGGTGGAT+TGG | 0.525562 | 1.3:-76556326 | MS.gene056297:intron |
| CCTGAAAGCGCTATTGCCAT+GGG | 0.527636 | 1.3:+76559171 | None:intergenic |
| AAATTTAGGCCCTTATTCTG+GGG | 0.528621 | 1.3:-76559052 | MS.gene056297:CDS |
| TTTAACAATAAGCATTCACT+TGG | 0.530647 | 1.3:+76554875 | None:intergenic |
| CGCAATTCAAGACGTTCTAA+AGG | 0.532669 | 1.3:-76560336 | MS.gene056297:CDS |
| AGTCCTACTATTGATACAAT+CGG | 0.537828 | 1.3:-76554902 | MS.gene056297:CDS |
| CATAGAAGTTCTAAGGGCAA+TGG | 0.539953 | 1.3:-76564057 | MS.gene056297:CDS |
| GAATCGATCCTCGTATAACT+GGG | 0.541805 | 1.3:+76554354 | None:intergenic |
| GGGATGTTGAAAGAGATAGA+AGG | 0.542287 | 1.3:-76563969 | MS.gene056297:CDS |
| GATGACATTGGGCATTGCAA+AGG | 0.544112 | 1.3:-76558671 | MS.gene056297:CDS |
| TATGTTTGATCCGGAAAATG+AGG | 0.544620 | 1.3:-76554849 | MS.gene056297:intron |
| GAGTGAGAGTGAACGAGAGA+AGG | 0.545249 | 1.3:-76563938 | MS.gene056297:CDS |
| TAGAGATGGAGAAAGAGGAA+TGG | 0.545325 | 1.3:-76563839 | MS.gene056297:CDS |
| ACTTCTGCATGAGTAATGCT+CGG | 0.546350 | 1.3:+76555167 | None:intergenic |
| AATTTAGGCCCTTATTCTGG+GGG | 0.547956 | 1.3:-76559051 | MS.gene056297:CDS |
| CGTGACAGGGTAAATAGAGA+TGG | 0.549256 | 1.3:-76563853 | MS.gene056297:CDS |
| GTTCTTCTCAAGGGCTGGCA+AGG | 0.552502 | 1.3:-76560830 | MS.gene056297:intron |
| GGAGTTGGAATGCCAGGTGG+AGG | 0.553313 | 1.3:-76554947 | MS.gene056297:CDS |
| GGCATTCCAACTCCTGGGGT+GGG | 0.554138 | 1.3:+76554956 | None:intergenic |
| CGTCGTTCACGGTCTAGAGA+TGG | 0.557047 | 1.3:-76564099 | MS.gene056297:CDS |
| TTACTGAAGCTGATCTTCGT+AGG | 0.557966 | 1.3:-76558990 | MS.gene056297:CDS |
| TCTTCTTGGTCAACCAGTGA+TGG | 0.558447 | 1.3:-76559142 | MS.gene056297:CDS |
| CGATGTCATGTCTGTCCCCA+TGG | 0.560163 | 1.3:-76559187 | MS.gene056297:CDS |
| CAGATGCCTCTTGATGACAT+TGG | 0.560834 | 1.3:-76558683 | MS.gene056297:CDS |
| AAGCATTCAAAATCTAGAGA+TGG | 0.565325 | 1.3:-76564132 | MS.gene056297:CDS |
| GTAGCTCTTATTCCCACCCC+AGG | 0.569618 | 1.3:-76554968 | MS.gene056297:CDS |
| GTTCAACATAGAAGTTCTAA+GGG | 0.570581 | 1.3:-76564063 | MS.gene056297:CDS |
| CTTCTGCATGAGTAATGCTC+GGG | 0.570793 | 1.3:+76555168 | None:intergenic |
| CTTTAGAACGTCTTGAATTG+CGG | 0.570798 | 1.3:+76560337 | None:intergenic |
| ATCGCAGTGGCATTGCATCA+AGG | 0.573059 | 1.3:-76555141 | MS.gene056297:intron |
| TACTGAAGCTGATCTTCGTA+GGG | 0.577585 | 1.3:-76558989 | MS.gene056297:intron |
| CGTTTATGAGTTCTTCTCAA+GGG | 0.577829 | 1.3:-76560839 | MS.gene056297:CDS |
| GATTGGTGGGAGGACAATCA+AGG | 0.581844 | 1.3:-76557886 | MS.gene056297:intron |
| ACCTGGCATTCCAACTCCTG+GGG | 0.582546 | 1.3:+76554952 | None:intergenic |
| TGAACTTGGAGACCTCCACC+TGG | 0.583833 | 1.3:+76554935 | None:intergenic |
| TCTACAGCATCTGTTGCTAA+CGG | 0.585181 | 1.3:-76559084 | MS.gene056297:CDS |
| ATTGATGATGATGAAGGTGG+TGG | 0.588755 | 1.3:-76556331 | MS.gene056297:CDS |
| CAATGCCCAATGTCATCAAG+AGG | 0.592641 | 1.3:+76558677 | None:intergenic |
| TAGAGATGGAGACAAGGAGA+AGG | 0.593241 | 1.3:-76564085 | MS.gene056297:CDS |
| ACCAGTGATGGTGAAGCCAT+CGG | 0.593462 | 1.3:-76559130 | MS.gene056297:CDS |
| AGTTCATAGTCGAAACTCAA+AGG | 0.593538 | 1.3:-76564181 | MS.gene056297:CDS |
| ATAGCCAGTTGGAGATTGGT+GGG | 0.598010 | 1.3:-76557899 | MS.gene056297:CDS |
| TTCTGAACCTAAGAATGGTG+TGG | 0.599396 | 1.3:-76564229 | MS.gene056297:CDS |
| CGGTGAAGAGAAGCATAGAA+GGG | 0.604123 | 1.3:-76564007 | MS.gene056297:CDS |
| ATGGAGAAAGAGGAATGGCA+AGG | 0.607009 | 1.3:-76563834 | MS.gene056297:CDS |
| GGTGCAAGAAGGCTCTATGT+TGG | 0.610158 | 1.3:-76559030 | MS.gene056297:CDS |
| TAGAGAGATGAGTCGTGACA+GGG | 0.610522 | 1.3:-76563866 | MS.gene056297:CDS |
| TGGAGAAAGAGGAATGGCAA+GGG | 0.610630 | 1.3:-76563833 | MS.gene056297:CDS |
| ACGTTTATGAGTTCTTCTCA+AGG | 0.612320 | 1.3:-76560840 | MS.gene056297:CDS |
| GGTGATATTGATGATGATGA+AGG | 0.615807 | 1.3:-76556337 | MS.gene056297:CDS |
| GTGGGAATAAGAGCTACTGC+TGG | 0.624602 | 1.3:+76554974 | None:intergenic |
| AAGAGAGACAGGGATAGAGA+CGG | 0.630880 | 1.3:-76564027 | MS.gene056297:CDS |
| ATCACTGGTTGACCAAGAAG+AGG | 0.635615 | 1.3:+76559144 | None:intergenic |
| AAGGGAGAGAGACAGAGACC+GGG | 0.638082 | 1.3:-76563989 | MS.gene056297:CDS |
| TAAGGGCCTAAATTTCCAGA+AGG | 0.648555 | 1.3:+76559060 | None:intergenic |
| GAAGCAAAAGCATTTCTGGA+AGG | 0.650865 | 1.3:-76563903 | MS.gene056297:CDS |
| TCAGAGCTTGAATAGCCAGT+TGG | 0.660361 | 1.3:-76557910 | MS.gene056297:CDS |
| CCAGGAGTTGGAATGCCAGG+TGG | 0.674750 | 1.3:-76554950 | MS.gene056297:CDS |
| ACGGTCTAGAGATGGAGACA+AGG | 0.676875 | 1.3:-76564091 | MS.gene056297:CDS |
| GATATTGATGATGATGAAGG+TGG | 0.683755 | 1.3:-76556334 | MS.gene056297:CDS |
| GCCAGTTGGAGATTGGTGGG+AGG | 0.684582 | 1.3:-76557896 | MS.gene056297:CDS |
| TCTGGAATGCAAGAATTCGG+CGG | 0.689367 | 1.3:-76556367 | MS.gene056297:CDS |
| ATGCAGAAGTTGGATCGCAG+TGG | 0.693345 | 1.3:-76555154 | MS.gene056297:CDS |
| TAGAAGTTCTAAGGGCAATG+GGG | 0.702855 | 1.3:-76564055 | MS.gene056297:CDS |
| AATCGATCCTCGTATAACTG+GGG | 0.710279 | 1.3:+76554355 | None:intergenic |
| TGGGGATAGGAAGAGAGACA+GGG | 0.717842 | 1.3:-76564037 | MS.gene056297:CDS |
| CTGAAAGCGCTATTGCCATG+GGG | 0.726318 | 1.3:+76559172 | None:intergenic |
| GTAGGTTCCCCAGTTATACG+AGG | 0.752635 | 1.3:-76554362 | MS.gene056297:intron |
| AATCTGCAATAAGTGCACAG+CGG | 0.813207 | 1.3:-76554531 | MS.gene056297:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 76554339 | 76564295 | 76554339 | ID=MS.gene056297 |
| chr1.3 | mRNA | 76554339 | 76564295 | 76554339 | ID=MS.gene056297.t1;Parent=MS.gene056297 |
| chr1.3 | exon | 76563805 | 76564295 | 76563805 | ID=MS.gene056297.t1.exon1;Parent=MS.gene056297.t1 |
| chr1.3 | CDS | 76563805 | 76564295 | 76563805 | ID=cds.MS.gene056297.t1;Parent=MS.gene056297.t1 |
| chr1.3 | exon | 76560976 | 76561057 | 76560976 | ID=MS.gene056297.t1.exon2;Parent=MS.gene056297.t1 |
| chr1.3 | CDS | 76560976 | 76561057 | 76560976 | ID=cds.MS.gene056297.t1;Parent=MS.gene056297.t1 |
| chr1.3 | exon | 76560831 | 76560887 | 76560831 | ID=MS.gene056297.t1.exon3;Parent=MS.gene056297.t1 |
| chr1.3 | CDS | 76560831 | 76560887 | 76560831 | ID=cds.MS.gene056297.t1;Parent=MS.gene056297.t1 |
| chr1.3 | exon | 76560330 | 76560385 | 76560330 | ID=MS.gene056297.t1.exon4;Parent=MS.gene056297.t1 |
| chr1.3 | CDS | 76560330 | 76560385 | 76560330 | ID=cds.MS.gene056297.t1;Parent=MS.gene056297.t1 |
| chr1.3 | exon | 76558990 | 76559224 | 76558990 | ID=MS.gene056297.t1.exon5;Parent=MS.gene056297.t1 |
| chr1.3 | CDS | 76558990 | 76559224 | 76558990 | ID=cds.MS.gene056297.t1;Parent=MS.gene056297.t1 |
| chr1.3 | exon | 76558655 | 76558738 | 76558655 | ID=MS.gene056297.t1.exon6;Parent=MS.gene056297.t1 |
| chr1.3 | CDS | 76558655 | 76558738 | 76558655 | ID=cds.MS.gene056297.t1;Parent=MS.gene056297.t1 |
| chr1.3 | exon | 76557887 | 76557961 | 76557887 | ID=MS.gene056297.t1.exon7;Parent=MS.gene056297.t1 |
| chr1.3 | CDS | 76557887 | 76557961 | 76557887 | ID=cds.MS.gene056297.t1;Parent=MS.gene056297.t1 |
| chr1.3 | exon | 76556327 | 76556410 | 76556327 | ID=MS.gene056297.t1.exon8;Parent=MS.gene056297.t1 |
| chr1.3 | CDS | 76556327 | 76556410 | 76556327 | ID=cds.MS.gene056297.t1;Parent=MS.gene056297.t1 |
| chr1.3 | exon | 76555142 | 76555206 | 76555142 | ID=MS.gene056297.t1.exon9;Parent=MS.gene056297.t1 |
| chr1.3 | CDS | 76555142 | 76555206 | 76555142 | ID=cds.MS.gene056297.t1;Parent=MS.gene056297.t1 |
| chr1.3 | exon | 76554850 | 76555066 | 76554850 | ID=MS.gene056297.t1.exon10;Parent=MS.gene056297.t1 |
| chr1.3 | CDS | 76554850 | 76555066 | 76554850 | ID=cds.MS.gene056297.t1;Parent=MS.gene056297.t1 |
| chr1.3 | exon | 76554676 | 76554764 | 76554676 | ID=MS.gene056297.t1.exon11;Parent=MS.gene056297.t1 |
| chr1.3 | CDS | 76554676 | 76554764 | 76554676 | ID=cds.MS.gene056297.t1;Parent=MS.gene056297.t1 |
| chr1.3 | exon | 76554480 | 76554594 | 76554480 | ID=MS.gene056297.t1.exon12;Parent=MS.gene056297.t1 |
| chr1.3 | CDS | 76554480 | 76554594 | 76554480 | ID=cds.MS.gene056297.t1;Parent=MS.gene056297.t1 |
| chr1.3 | exon | 76554339 | 76554380 | 76554339 | ID=MS.gene056297.t1.exon13;Parent=MS.gene056297.t1 |
| chr1.3 | CDS | 76554339 | 76554380 | 76554339 | ID=cds.MS.gene056297.t1;Parent=MS.gene056297.t1 |
| Gene Sequence |
| Protein sequence |
