Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054548.t1 | XP_013454546.1 | 97.2 | 176 | 5 | 0 | 1 | 176 | 1 | 176 | 2.30E-88 | 335.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054548.t1 | B8AE37 | 62.3 | 175 | 50 | 3 | 15 | 176 | 9 | 180 | 6.5e-47 | 188.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054548.t1 | A0A072UGK4 | 97.2 | 176 | 5 | 0 | 1 | 176 | 1 | 176 | 1.7e-88 | 335.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene054548 | -0.823755 | 1.17E-53 | -1.69E-46 |
| MS.gene052011 | MS.gene054548 | -0.813299 | 2.75E-51 | -1.69E-46 |
| MS.gene052159 | MS.gene054548 | 0.806877 | 6.64E-50 | -1.69E-46 |
| MS.gene053176 | MS.gene054548 | 0.990196 | 1.68E-181 | -1.69E-46 |
| MS.gene054183 | MS.gene054548 | 0.837886 | 3.99E-57 | -1.69E-46 |
| MS.gene054548 | MS.gene054920 | 0.821959 | 3.06E-53 | -1.69E-46 |
| MS.gene054548 | MS.gene056297 | 0.82437 | 8.37E-54 | -1.69E-46 |
| MS.gene054548 | MS.gene061506 | 0.816899 | 4.36E-52 | -1.69E-46 |
| MS.gene054548 | MS.gene062852 | 0.809975 | 1.45E-50 | -1.69E-46 |
| MS.gene054548 | MS.gene06433 | -0.801447 | 8.97E-49 | -1.69E-46 |
| MS.gene054548 | MS.gene065011 | 0.829553 | 4.83E-55 | -1.69E-46 |
| MS.gene054548 | MS.gene065350 | -0.830009 | 3.74E-55 | -1.69E-46 |
| MS.gene054548 | MS.gene066830 | -0.801364 | 9.32E-49 | -1.69E-46 |
| MS.gene054548 | MS.gene07137 | 0.817309 | 3.52E-52 | -1.69E-46 |
| MS.gene054548 | MS.gene07139 | 0.827799 | 1.28E-54 | -1.69E-46 |
| MS.gene054548 | MS.gene072189 | 0.80785 | 4.13E-50 | -1.69E-46 |
| MS.gene054548 | MS.gene072659 | -0.816 | 6.93E-52 | -1.69E-46 |
| MS.gene054548 | MS.gene07615 | 0.811307 | 7.48E-51 | -1.69E-46 |
| MS.gene054548 | MS.gene07617 | 0.812468 | 4.18E-51 | -1.69E-46 |
| MS.gene054548 | MS.gene07621 | 0.815017 | 1.15E-51 | -1.69E-46 |
| MS.gene054548 | MS.gene08779 | 0.803859 | 2.85E-49 | -1.69E-46 |
| MS.gene054548 | MS.gene08906 | 0.809142 | 2.19E-50 | -1.69E-46 |
| MS.gene054548 | MS.gene08908 | 0.812365 | 4.40E-51 | -1.69E-46 |
| MS.gene054548 | MS.gene08932 | 0.836255 | 1.04E-56 | -1.69E-46 |
| MS.gene054548 | MS.gene09310 | 0.803448 | 3.47E-49 | -1.69E-46 |
| MS.gene054548 | MS.gene20653 | 0.805378 | 1.37E-49 | -1.69E-46 |
| MS.gene054548 | MS.gene24742 | 0.838252 | 3.21E-57 | -1.69E-46 |
| MS.gene054548 | MS.gene28853 | -0.825657 | 4.16E-54 | -1.69E-46 |
| MS.gene054548 | MS.gene30475 | 0.843514 | 1.34E-58 | -1.69E-46 |
| MS.gene054548 | MS.gene39685 | 0.801767 | 7.71E-49 | -1.69E-46 |
| MS.gene054548 | MS.gene40678 | 0.837651 | 4.58E-57 | -1.69E-46 |
| MS.gene054548 | MS.gene41333 | -0.830601 | 2.68E-55 | -1.69E-46 |
| MS.gene054548 | MS.gene41713 | 0.804369 | 2.23E-49 | -1.69E-46 |
| MS.gene054548 | MS.gene42548 | 0.802996 | 4.30E-49 | -1.69E-46 |
| MS.gene054548 | MS.gene49850 | 0.805018 | 1.63E-49 | -1.69E-46 |
| MS.gene054548 | MS.gene51389 | 0.814088 | 1.84E-51 | -1.69E-46 |
| MS.gene054548 | MS.gene52997 | 0.805358 | 1.39E-49 | -1.69E-46 |
| MS.gene054548 | MS.gene54659 | 0.813506 | 2.47E-51 | -1.69E-46 |
| MS.gene054548 | MS.gene60286 | 0.814913 | 1.21E-51 | -1.69E-46 |
| MS.gene054548 | MS.gene61653 | 0.803929 | 2.76E-49 | -1.69E-46 |
| MS.gene054548 | MS.gene64910 | 0.829114 | 6.17E-55 | -1.69E-46 |
| MS.gene054548 | MS.gene65428 | 0.977404 | 1.03E-143 | -1.69E-46 |
| MS.gene054548 | MS.gene68339 | 0.880025 | 7.71E-70 | -1.69E-46 |
| MS.gene054548 | MS.gene70368 | 0.811867 | 5.65E-51 | -1.69E-46 |
| MS.gene054548 | MS.gene72676 | 0.800207 | 1.61E-48 | -1.69E-46 |
| MS.gene054548 | MS.gene72677 | 0.803342 | 3.65E-49 | -1.69E-46 |
| MS.gene054548 | MS.gene74803 | 0.822815 | 1.94E-53 | -1.69E-46 |
| MS.gene054548 | MS.gene74809 | 0.805544 | 1.27E-49 | -1.69E-46 |
| MS.gene054548 | MS.gene75039 | 0.802622 | 5.14E-49 | -1.69E-46 |
| MS.gene054548 | MS.gene75598 | -0.8019 | 7.24E-49 | -1.69E-46 |
| MS.gene054548 | MS.gene77754 | 0.822637 | 2.13E-53 | -1.69E-46 |
| MS.gene054548 | MS.gene78643 | 0.845543 | 3.80E-59 | -1.69E-46 |
| MS.gene054548 | MS.gene80082 | 0.806887 | 6.61E-50 | -1.69E-46 |
| MS.gene054548 | MS.gene82521 | 0.82612 | 3.23E-54 | -1.69E-46 |
| MS.gene054548 | MS.gene83012 | -0.802425 | 5.64E-49 | -1.69E-46 |
| MS.gene054548 | MS.gene85276 | -0.810233 | 1.28E-50 | -1.69E-46 |
| MS.gene054548 | MS.gene86331 | 0.823337 | 1.46E-53 | -1.69E-46 |
| MS.gene054548 | MS.gene86351 | -0.804238 | 2.38E-49 | -1.69E-46 |
| MS.gene054548 | MS.gene87570 | 0.833526 | 5.07E-56 | -1.69E-46 |
| MS.gene054548 | MS.gene87631 | 0.806665 | 7.37E-50 | -1.69E-46 |
| MS.gene054548 | MS.gene88707 | -0.846865 | 1.66E-59 | -1.69E-46 |
| MS.gene054548 | MS.gene89062 | -0.809073 | 2.27E-50 | -1.69E-46 |
| MS.gene054548 | MS.gene91428 | 0.818884 | 1.55E-52 | -1.69E-46 |
| MS.gene054548 | MS.gene92106 | 0.817062 | 4.01E-52 | -1.69E-46 |
| MS.gene054548 | MS.gene93869 | 0.808773 | 2.63E-50 | -1.69E-46 |
| MS.gene054548 | MS.gene94682 | 0.820001 | 8.64E-53 | -1.69E-46 |
| MS.gene054548 | MS.gene96111 | 0.851553 | 8.23E-61 | -1.69E-46 |
| MS.gene054548 | MS.gene96454 | 0.81255 | 4.01E-51 | -1.69E-46 |
| MS.gene054548 | MS.gene97211 | 0.816827 | 4.53E-52 | -1.69E-46 |
| MS.gene054548 | MS.gene98499 | 0.812539 | 4.03E-51 | -1.69E-46 |
| MS.gene054548 | MS.gene99638 | 0.813811 | 2.12E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054548.t1 | MTR_4g007700 | 96.172 | 209 | 8 | 0 | 1 | 209 | 1 | 209 | 2.07e-146 | 405 |
| MS.gene054548.t1 | MTR_4g007700 | 96.739 | 184 | 6 | 0 | 26 | 209 | 12 | 195 | 5.45e-127 | 356 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054548.t1 | AT1G80940 | 66.497 | 197 | 52 | 4 | 2 | 190 | 14 | 204 | 6.19e-79 | 235 |
| MS.gene054548.t1 | AT1G80940 | 84.252 | 127 | 19 | 1 | 65 | 190 | 16 | 142 | 6.64e-70 | 210 |
| MS.gene054548.t1 | AT1G80940 | 60.690 | 145 | 43 | 4 | 2 | 138 | 14 | 152 | 2.24e-48 | 156 |
| MS.gene054548.t1 | AT1G80940 | 52.033 | 123 | 45 | 4 | 2 | 116 | 14 | 130 | 2.20e-30 | 110 |
Find 56 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCTTCATCTCCCACTTCT+TGG | 0.189164 | 4.1:+87675380 | None:intergenic |
| TAACCTTTCTGTTCATTTCT+TGG | 0.189299 | 4.1:+87675879 | None:intergenic |
| CGGCCGTTGCTGTTCTTTAT+AGG | 0.207088 | 4.1:+87676034 | None:intergenic |
| TGCCGAAGTTTCTGAGCTTT+CGG | 0.303182 | 4.1:-87676089 | MS.gene054548:CDS |
| CTGTTCTTTATAGGTTCTAA+TGG | 0.315483 | 4.1:+87676043 | None:intergenic |
| AGGAGTATCTTCCGGGTTGC+CGG | 0.334216 | 4.1:+87676135 | None:intergenic |
| GAGTCCTGCATTTCCACATT+AGG | 0.337528 | 4.1:+87676112 | None:intergenic |
| CATTAGGAGGAGTATCTTCC+GGG | 0.367822 | 4.1:+87676128 | None:intergenic |
| AAAATCTGAGGAGGTGAAAC+AGG | 0.371893 | 4.1:+87677916 | None:intergenic |
| TTCATCTTCAAGGTTCATCT+TGG | 0.411081 | 4.1:+87675359 | None:intergenic |
| TATGGTCATGGATGATGCTT+TGG | 0.425253 | 4.1:-87677950 | MS.gene054548:CDS |
| TATCCAAAGGGATGGCTGAT+TGG | 0.428780 | 4.1:-87675959 | MS.gene054548:CDS |
| TTTCCAATCAGCCATCCCTT+TGG | 0.434651 | 4.1:+87675956 | None:intergenic |
| GGAGTATCTTCCGGGTTGCC+GGG | 0.439882 | 4.1:+87676136 | None:intergenic |
| TTGCAGGATAGAGAAATAGA+TGG | 0.443528 | 4.1:-87675574 | MS.gene054548:intron |
| GTTACAAGAAACTGAGCAAA+TGG | 0.465931 | 4.1:-87675413 | MS.gene054548:CDS |
| TCCTCCTAATGTGGAAATGC+AGG | 0.470382 | 4.1:-87676116 | MS.gene054548:CDS |
| GGCCAAGAAGTGGGAGATGA+AGG | 0.479804 | 4.1:-87675382 | MS.gene054548:CDS |
| TAGTTTGCAGACTCAAAATC+AGG | 0.486553 | 4.1:+87675980 | None:intergenic |
| AGCTAGCGGGAGGAATTTAG+AGG | 0.489631 | 4.1:-87676188 | MS.gene054548:CDS |
| ACATTAGGAGGAGTATCTTC+CGG | 0.492696 | 4.1:+87676127 | None:intergenic |
| AGATGGACTAAACGAACAGC+TGG | 0.507521 | 4.1:-87675557 | MS.gene054548:CDS |
| AGGAAGCAAAGACTCGGCAG+AGG | 0.524151 | 4.1:+87676006 | None:intergenic |
| TGAGCTTTCGGAGCGTCGAA+AGG | 0.531699 | 4.1:-87676077 | MS.gene054548:CDS |
| TCCTGCATTTCCACATTAGG+AGG | 0.532301 | 4.1:+87676115 | None:intergenic |
| TGGAAATCTAGAAAGAGATC+AGG | 0.533990 | 4.1:-87677892 | MS.gene054548:intron |
| GAGTCTGCAAACTATCCAAA+GGG | 0.537534 | 4.1:-87675971 | MS.gene054548:CDS |
| CTAGATTTCCAGAAAATCTG+AGG | 0.541060 | 4.1:+87677904 | None:intergenic |
| ACTGAGCAAATGGCAGATGA+AGG | 0.541063 | 4.1:-87675403 | MS.gene054548:CDS |
| TAAAACACCACCCGGCAACC+CGG | 0.548227 | 4.1:-87676146 | MS.gene054548:CDS |
| GTCATGGATGATGCTTTGGA+TGG | 0.553546 | 4.1:-87677946 | MS.gene054548:CDS |
| AACAGCTGGAGGAGGATTCG+CGG | 0.559765 | 4.1:-87675543 | MS.gene054548:CDS |
| GGAAGATACTCCTCCTAATG+TGG | 0.567411 | 4.1:-87676125 | MS.gene054548:CDS |
| TGAGTCTGCAAACTATCCAA+AGG | 0.573463 | 4.1:-87675972 | MS.gene054548:CDS |
| AAGACTCGGCAGAGGGTCGT+CGG | 0.585384 | 4.1:+87676014 | None:intergenic |
| CTCCGAAAGCTCAGAAACTT+CGG | 0.590975 | 4.1:+87676087 | None:intergenic |
| TGTCCAAGAAATGAACAGAA+AGG | 0.592222 | 4.1:-87675882 | MS.gene054548:intron |
| CTGCAAACTATCCAAAGGGA+TGG | 0.596246 | 4.1:-87675967 | MS.gene054548:CDS |
| ACGTGTTCACCACAGCTAGC+GGG | 0.599138 | 4.1:-87676201 | MS.gene054548:intron |
| GGCAGATGAAGGCCAAGAAG+TGG | 0.599174 | 4.1:-87675392 | MS.gene054548:CDS |
| GCAGACTCAAAATCAGGTGG+AGG | 0.602642 | 4.1:+87675986 | None:intergenic |
| AGGTGGAGGAAGCAAAGACT+CGG | 0.620390 | 4.1:+87676000 | None:intergenic |
| ACTAAACGAACAGCTGGAGG+AGG | 0.624134 | 4.1:-87675551 | MS.gene054548:CDS |
| GCAGATGAAGGCCAAGAAGT+GGG | 0.625863 | 4.1:-87675391 | MS.gene054548:CDS |
| AGGTTCTAATGGTTCAAACA+AGG | 0.637581 | 4.1:+87676054 | None:intergenic |
| GCACTTGCAAGTGCAGCTTG+TGG | 0.640595 | 4.1:-87675512 | MS.gene054548:CDS |
| GGAAGCAAAGACTCGGCAGA+GGG | 0.645207 | 4.1:+87676007 | None:intergenic |
| ATGTGGTCGAAAGCATGCGA+AGG | 0.652930 | 4.1:-87675910 | MS.gene054548:CDS |
| GATACAGCTAAAACACCACC+CGG | 0.658820 | 4.1:-87676154 | MS.gene054548:CDS |
| TGGACTAAACGAACAGCTGG+AGG | 0.659762 | 4.1:-87675554 | MS.gene054548:CDS |
| GTATCTTCCGGGTTGCCGGG+TGG | 0.662272 | 4.1:+87676139 | None:intergenic |
| TTTGCAGACTCAAAATCAGG+TGG | 0.663167 | 4.1:+87675983 | None:intergenic |
| GAACCTATAAAGAACAGCAA+CGG | 0.668853 | 4.1:-87676037 | MS.gene054548:CDS |
| GATTTCCAGAAAATCTGAGG+AGG | 0.685426 | 4.1:+87677907 | None:intergenic |
| AAAGCTTGTCAATGTTGATG+TGG | 0.687893 | 4.1:-87675927 | MS.gene054548:CDS |
| TGTTCACCACAGCTAGCGGG+AGG | 0.700309 | 4.1:-87676198 | MS.gene054548:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAAATAACAATTTTATTA+AGG | + | chr4.1:87676251-87676270 | None:intergenic | 10.0% |
| !! | AAAATTGAAACATTCATATA+TGG | + | chr4.1:87676502-87676521 | None:intergenic | 15.0% |
| !! | GATGTAAAATTGAATTATAA+TGG | + | chr4.1:87676558-87676577 | None:intergenic | 15.0% |
| !! | TAACATGAAAATAATAGTAT+TGG | + | chr4.1:87676076-87676095 | None:intergenic | 15.0% |
| !! | TTCAATGATTATTATAACTA+TGG | + | chr4.1:87676877-87676896 | None:intergenic | 15.0% |
| !!! | AATATAAAGTATTGTTTTGT+TGG | + | chr4.1:87676204-87676223 | None:intergenic | 15.0% |
| !!! | ATACGTTAGTATAATATTTT+TGG | - | chr4.1:87675923-87675942 | MS.gene054548:CDS | 15.0% |
| !!! | CTTTATTATTTTATCTTGTA+TGG | - | chr4.1:87675589-87675608 | MS.gene054548:intron | 15.0% |
| !! | ATTAAATTTCTTGATGTACA+AGG | - | chr4.1:87676293-87676312 | MS.gene054548:intron | 20.0% |
| !! | GTATGGTATTTATAGTATTT+AGG | - | chr4.1:87675606-87675625 | MS.gene054548:intron | 20.0% |
| !! | TAAAAGATGAAGAAGAAAAA+AGG | + | chr4.1:87675451-87675470 | None:intergenic | 20.0% |
| !! | TAAATGAATTGCAAAAAGAA+TGG | - | chr4.1:87677089-87677108 | MS.gene054548:intron | 20.0% |
| !! | TATTATACTAACGTATTGTT+TGG | + | chr4.1:87675919-87675938 | None:intergenic | 20.0% |
| !! | TTAAATTTCTTGATGTACAA+GGG | - | chr4.1:87676294-87676313 | MS.gene054548:intron | 20.0% |
| !!! | AATTGTTATTTTTGTGATCA+TGG | - | chr4.1:87676257-87676276 | MS.gene054548:intron | 20.0% |
| !!! | ATTTGTATGATTTGAAATTG+AGG | - | chr4.1:87675724-87675743 | MS.gene054548:intron | 20.0% |
| !!! | ATTTTACATCTTCTTTTTCA+AGG | - | chr4.1:87676568-87676587 | MS.gene054548:intron | 20.0% |
| !!! | GGTGATTTTTTAATTGAATT+TGG | - | chr4.1:87675649-87675668 | MS.gene054548:intron | 20.0% |
| !!! | TGAATTTAAGGTTGTTAAAA+AGG | + | chr4.1:87677474-87677493 | None:intergenic | 20.0% |
| !!! | TTTTTCAAGGAAACTTAAAT+GGG | - | chr4.1:87676581-87676600 | MS.gene054548:intron | 20.0% |
| ! | ATATGGTAGATGAACAATAA+AGG | + | chr4.1:87676485-87676504 | None:intergenic | 25.0% |
| ! | CAAGTGGATAAAAAATAAAC+TGG | + | chr4.1:87677600-87677619 | None:intergenic | 25.0% |
| ! | TAAATTTCTTGATGTACAAG+GGG | - | chr4.1:87676295-87676314 | MS.gene054548:intron | 25.0% |
| !! | ATTGAACATGTTTTCAATCT+AGG | + | chr4.1:87676032-87676051 | None:intergenic | 25.0% |
| !!! | CATTCTTAGCTTTGAATTTA+AGG | + | chr4.1:87677486-87677505 | None:intergenic | 25.0% |
| !!! | CTTTTTCAAGGAAACTTAAA+TGG | - | chr4.1:87676580-87676599 | MS.gene054548:intron | 25.0% |
| !!! | GCTTTATTTGTTATTATGGT+TGG | - | chr4.1:87675889-87675908 | MS.gene054548:CDS | 25.0% |
| !!! | GTGTTTAATTGAGCTTTTTT+TGG | - | chr4.1:87675628-87675647 | MS.gene054548:intron | 25.0% |
| !!! | TAACATTTTGTTTTGTAAGC+TGG | - | chr4.1:87675764-87675783 | MS.gene054548:intron | 25.0% |
| AAATTTCTTGATGTACAAGG+GGG | - | chr4.1:87676296-87676315 | MS.gene054548:intron | 30.0% | |
| AGGTTGTTAAAAAGGAAACT+TGG | + | chr4.1:87677466-87677485 | None:intergenic | 30.0% | |
| ATTAAGAAGTCACATATGCA+AGG | + | chr4.1:87676447-87676466 | None:intergenic | 30.0% | |
| ATTGGATACTGAAATTTGGA+AGG | + | chr4.1:87676764-87676783 | None:intergenic | 30.0% | |
| GTGGATAAAAAATAAACTGG+TGG | + | chr4.1:87677597-87677616 | None:intergenic | 30.0% | |
| TAACCTTTCTGTTCATTTCT+TGG | + | chr4.1:87677439-87677458 | None:intergenic | 30.0% | |
| TACCATTGGATACTGAAATT+TGG | + | chr4.1:87676768-87676787 | None:intergenic | 30.0% | |
| TTCCAAATTTCAGTATCCAA+TGG | - | chr4.1:87676763-87676782 | MS.gene054548:intron | 30.0% | |
| TTGGATACTGAAATTTGGAA+GGG | + | chr4.1:87676763-87676782 | None:intergenic | 30.0% | |
| ! | ATAGTATTGGACTATTGTGT+TGG | + | chr4.1:87676063-87676082 | None:intergenic | 30.0% |
| ! | CTGTTCTTTATAGGTTCTAA+TGG | + | chr4.1:87677275-87677294 | None:intergenic | 30.0% |
| ! | CTTGTTATGTGTTGAGTTAT+GGG | - | chr4.1:87676360-87676379 | MS.gene054548:intron | 30.0% |
| ! | TCTTGTTATGTGTTGAGTTA+TGG | - | chr4.1:87676359-87676378 | MS.gene054548:intron | 30.0% |
| ! | TGTTGGTTACTTTCATAAAG+AGG | + | chr4.1:87676187-87676206 | None:intergenic | 30.0% |
| !! | AAAAGTGTTGAAAAGAGGTT+TGG | - | chr4.1:87677659-87677678 | MS.gene054548:intron | 30.0% |
| !! | CGCTGCTTTATTTGTTATTA+TGG | - | chr4.1:87675885-87675904 | MS.gene054548:CDS | 30.0% |
| !!! | CAACACTTTTTCTCGTATAT+TGG | + | chr4.1:87677649-87677668 | None:intergenic | 30.0% |
| AAAGCTTGTCAATGTTGATG+TGG | - | chr4.1:87677388-87677407 | MS.gene054548:intron | 35.0% | |
| AATGGGAGATGAATCACTAA+AGG | - | chr4.1:87676598-87676617 | MS.gene054548:intron | 35.0% | |
| ATTAGATCTCATCAGAACTC+CGG | - | chr4.1:87676099-87676118 | MS.gene054548:CDS | 35.0% | |
| CAACACAAAAACTTTCTAGG+AGG | + | chr4.1:87676145-87676164 | None:intergenic | 35.0% | |
| CATTTAAGCACGATTAACTC+CGG | + | chr4.1:87676121-87676140 | None:intergenic | 35.0% | |
| CTAGATTTCCAGAAAATCTG+AGG | + | chr4.1:87675414-87675433 | None:intergenic | 35.0% | |
| GAACCTATAAAGAACAGCAA+CGG | - | chr4.1:87677278-87677297 | MS.gene054548:intron | 35.0% | |
| GCAGAATGAACTTTGAATTG+TGG | - | chr4.1:87676732-87676751 | MS.gene054548:intron | 35.0% | |
| GTACAATAGTGGTTAACAGT+TGG | - | chr4.1:87675846-87675865 | MS.gene054548:intron | 35.0% | |
| GTGCAACACAAAAACTTTCT+AGG | + | chr4.1:87676148-87676167 | None:intergenic | 35.0% | |
| GTTACAAGAAACTGAGCAAA+TGG | - | chr4.1:87677902-87677921 | MS.gene054548:CDS | 35.0% | |
| GTTCATTCTGCTAAGTTCAA+AGG | + | chr4.1:87676723-87676742 | None:intergenic | 35.0% | |
| TGGAAATCTAGAAAGAGATC+AGG | - | chr4.1:87675423-87675442 | MS.gene054548:CDS | 35.0% | |
| TGTCCAAGAAATGAACAGAA+AGG | - | chr4.1:87677433-87677452 | MS.gene054548:intron | 35.0% | |
| TTGCAGGATAGAGAAATAGA+TGG | - | chr4.1:87677741-87677760 | MS.gene054548:intron | 35.0% | |
| ! | AGGTTCTAATGGTTCAAACA+AGG | + | chr4.1:87677264-87677283 | None:intergenic | 35.0% |
| ! | TAGTTTGCAGACTCAAAATC+AGG | + | chr4.1:87677338-87677357 | None:intergenic | 35.0% |
| ! | TCAATAAGCTCTGATACCAT+TGG | + | chr4.1:87676782-87676801 | None:intergenic | 35.0% |
| !! | CGAGAAAAAGTGTTGAAAAG+AGG | - | chr4.1:87677654-87677673 | MS.gene054548:intron | 35.0% |
| !!! | TCTTTTTTTGAACCCTACCA+TGG | + | chr4.1:87677002-87677021 | None:intergenic | 35.0% |
| AAAATCTGAGGAGGTGAAAC+AGG | + | chr4.1:87675402-87675421 | None:intergenic | 40.0% | |
| AGACTGTTAGAGTCTGCAAT+TGG | + | chr4.1:87677533-87677552 | None:intergenic | 40.0% | |
| ATGCTTCATAGATAGATCCC+TGG | - | chr4.1:87676976-87676995 | MS.gene054548:intron | 40.0% | |
| CATATGCAAGGAAACCAACA+TGG | + | chr4.1:87676435-87676454 | None:intergenic | 40.0% | |
| CGAGTCTTACTAAAGTCAAG+TGG | + | chr4.1:87677616-87677635 | None:intergenic | 40.0% | |
| CTAAGTTCAAAGGCAGTTCA+AGG | + | chr4.1:87676713-87676732 | None:intergenic | 40.0% | |
| GAGTCTGCAAACTATCCAAA+GGG | - | chr4.1:87677344-87677363 | MS.gene054548:intron | 40.0% | |
| GATTTCCAGAAAATCTGAGG+AGG | + | chr4.1:87675411-87675430 | None:intergenic | 40.0% | |
| TAAAAACCCATGTGGCTGTT+TGG | - | chr4.1:87676321-87676340 | MS.gene054548:intron | 40.0% | |
| TGAGTCTGCAAACTATCCAA+AGG | - | chr4.1:87677343-87677362 | MS.gene054548:intron | 40.0% | |
| TTTGCAGACTCAAAATCAGG+TGG | + | chr4.1:87677335-87677354 | None:intergenic | 40.0% | |
| ! | AAGAGGTGCAACACATAAAG+CGG | + | chr4.1:87676170-87676189 | None:intergenic | 40.0% |
| ! | CATTTGACGACTTTTGTTGC+AGG | - | chr4.1:87677725-87677744 | MS.gene054548:intron | 40.0% |
| ! | TATTGCTAGCATTTTCCGCA+TGG | - | chr4.1:87677688-87677707 | MS.gene054548:intron | 40.0% |
| ! | TTTCACCTCCTCAGATTTTC+TGG | - | chr4.1:87675403-87675422 | MS.gene054548:CDS | 40.0% |
| !! | ACATTAGGAGGAGTATCTTC+CGG | + | chr4.1:87677191-87677210 | None:intergenic | 40.0% |
| ACACTATCCAAACAGCCACA+TGG | + | chr4.1:87676331-87676350 | None:intergenic | 45.0% | |
| ACATGGAGGCTACACTAAAG+AGG | + | chr4.1:87676418-87676437 | None:intergenic | 45.0% | |
| ACTGAGCAAATGGCAGATGA+AGG | - | chr4.1:87677912-87677931 | MS.gene054548:CDS | 45.0% | |
| AGGGGGAATAAAAACCCATG+TGG | - | chr4.1:87676313-87676332 | MS.gene054548:intron | 45.0% | |
| AGTTATGGGACAGCTAATCC+TGG | - | chr4.1:87676374-87676393 | MS.gene054548:intron | 45.0% | |
| ATGCAAGGAAACCAACATGG+AGG | + | chr4.1:87676432-87676451 | None:intergenic | 45.0% | |
| CACTATCCAAACAGCCACAT+GGG | + | chr4.1:87676330-87676349 | None:intergenic | 45.0% | |
| CATGGAGGCTACACTAAAGA+GGG | + | chr4.1:87676417-87676436 | None:intergenic | 45.0% | |
| CTCCGAAAGCTCAGAAACTT+CGG | + | chr4.1:87677231-87677250 | None:intergenic | 45.0% | |
| CTGCAAACTATCCAAAGGGA+TGG | - | chr4.1:87677348-87677367 | MS.gene054548:intron | 45.0% | |
| CTTTAGTGTAGCCTCCATGT+TGG | - | chr4.1:87676418-87676437 | MS.gene054548:intron | 45.0% | |
| GAGTCCTGCATTTCCACATT+AGG | + | chr4.1:87677206-87677225 | None:intergenic | 45.0% | |
| GATACAGCTAAAACACCACC+CGG | - | chr4.1:87677161-87677180 | MS.gene054548:intron | 45.0% | |
| GGAAGATACTCCTCCTAATG+TGG | - | chr4.1:87677190-87677209 | MS.gene054548:intron | 45.0% | |
| TACGCTTCTCTCTCTTCTCT+TGG | + | chr4.1:87675829-87675848 | None:intergenic | 45.0% | |
| TATCCAAAGGGATGGCTGAT+TGG | - | chr4.1:87677356-87677375 | MS.gene054548:intron | 45.0% | |
| TCCTCCTAATGTGGAAATGC+AGG | - | chr4.1:87677199-87677218 | MS.gene054548:intron | 45.0% | |
| TCCTGCATTTCCACATTAGG+AGG | + | chr4.1:87677203-87677222 | None:intergenic | 45.0% | |
| TGCCGAAGTTTCTGAGCTTT+CGG | - | chr4.1:87677226-87677245 | MS.gene054548:intron | 45.0% | |
| TTTCCAATCAGCCATCCCTT+TGG | + | chr4.1:87677362-87677381 | None:intergenic | 45.0% | |
| ! | GAGAGAGAAGCGTACAATAG+TGG | - | chr4.1:87675835-87675854 | MS.gene054548:intron | 45.0% |
| ! | GTCATGGATGATGCTTTGGA+TGG | - | chr4.1:87675369-87675388 | MS.gene054548:CDS | 45.0% |
| ! | GTCGTCAAATGCATTAGCCT+CGG | + | chr4.1:87677716-87677735 | None:intergenic | 45.0% |
| !! | AGATGGACTAAACGAACAGC+TGG | - | chr4.1:87677758-87677777 | MS.gene054548:intron | 45.0% |
| !! | CACTAAAGAGGGTTGGTTGA+AGG | + | chr4.1:87676406-87676425 | None:intergenic | 45.0% |
| !! | CATTAGGAGGAGTATCTTCC+GGG | + | chr4.1:87677190-87677209 | None:intergenic | 45.0% |
| !! | TAAAGAGGGTTGGTTGAAGG+TGG | + | chr4.1:87676403-87676422 | None:intergenic | 45.0% |
| !!! | TTTTTTTATGATAAAAATTT+TGG | + | chr4.1:87675950-87675969 | None:intergenic | 5.0% |
| AACGTGTTCACCACAGCTAG+CGG | - | chr4.1:87677113-87677132 | MS.gene054548:intron | 50.0% | |
| ACTAAACGAACAGCTGGAGG+AGG | - | chr4.1:87677764-87677783 | MS.gene054548:intron | 50.0% | |
| AGCTAGCGGGAGGAATTTAG+AGG | - | chr4.1:87677127-87677146 | MS.gene054548:intron | 50.0% | |
| AGGTGGAGGAAGCAAAGACT+CGG | + | chr4.1:87677318-87677337 | None:intergenic | 50.0% | |
| ATAGATCCCTGGCCATGGTA+GGG | - | chr4.1:87676987-87677006 | MS.gene054548:intron | 50.0% | |
| CATAGATAGATCCCTGGCCA+TGG | - | chr4.1:87676982-87677001 | MS.gene054548:intron | 50.0% | |
| GAGGCTACACTAAAGAGGGT+TGG | + | chr4.1:87676413-87676432 | None:intergenic | 50.0% | |
| GCAGACTCAAAATCAGGTGG+AGG | + | chr4.1:87677332-87677351 | None:intergenic | 50.0% | |
| GCAGATGAAGGCCAAGAAGT+GGG | - | chr4.1:87677924-87677943 | MS.gene054548:CDS | 50.0% | |
| TAAATTCCTCCCGCTAGCTG+TGG | + | chr4.1:87677126-87677145 | None:intergenic | 50.0% | |
| TGGACTAAACGAACAGCTGG+AGG | - | chr4.1:87677761-87677780 | MS.gene054548:intron | 50.0% | |
| TTTGAACCCTACCATGGCCA+GGG | + | chr4.1:87676996-87677015 | None:intergenic | 50.0% | |
| ! | ATGTGGTCGAAAGCATGCGA+AGG | - | chr4.1:87677405-87677424 | MS.gene054548:intron | 50.0% |
| ! | CGGCCGTTGCTGTTCTTTAT+AGG | + | chr4.1:87677284-87677303 | None:intergenic | 50.0% |
| ! | TTTTGAACCCTACCATGGCC+AGG | + | chr4.1:87676997-87677016 | None:intergenic | 50.0% |
| AACAGCTGGAGGAGGATTCG+CGG | - | chr4.1:87677772-87677791 | MS.gene054548:intron | 55.0% | |
| ACGTGTTCACCACAGCTAGC+GGG | - | chr4.1:87677114-87677133 | MS.gene054548:intron | 55.0% | |
| AGGAAGCAAAGACTCGGCAG+AGG | + | chr4.1:87677312-87677331 | None:intergenic | 55.0% | |
| GATAGATCCCTGGCCATGGT+AGG | - | chr4.1:87676986-87677005 | MS.gene054548:intron | 55.0% | |
| GCACTTGCAAGTGCAGCTTG+TGG | - | chr4.1:87677803-87677822 | MS.gene054548:intron | 55.0% | |
| GGAAGCAAAGACTCGGCAGA+GGG | + | chr4.1:87677311-87677330 | None:intergenic | 55.0% | |
| GGCAGATGAAGGCCAAGAAG+TGG | - | chr4.1:87677923-87677942 | MS.gene054548:CDS | 55.0% | |
| GGCCAAGAAGTGGGAGATGA+AGG | - | chr4.1:87677933-87677952 | MS.gene054548:CDS | 55.0% | |
| GGCCTTCATCTCCCACTTCT+TGG | + | chr4.1:87677938-87677957 | None:intergenic | 55.0% | |
| TAAAACACCACCCGGCAACC+CGG | - | chr4.1:87677169-87677188 | MS.gene054548:intron | 55.0% | |
| ! | GCATTAGCCTCGGTTCCATG+CGG | + | chr4.1:87677706-87677725 | None:intergenic | 55.0% |
| ! | GCATTTTCCGCATGGAACCG+AGG | - | chr4.1:87677696-87677715 | MS.gene054548:intron | 55.0% |
| !! | AGAGGGTTGGTTGAAGGTGG+AGG | + | chr4.1:87676400-87676419 | None:intergenic | 55.0% |
| !! | AGGAGTATCTTCCGGGTTGC+CGG | + | chr4.1:87677183-87677202 | None:intergenic | 55.0% |
| !! | TGAGCTTTCGGAGCGTCGAA+AGG | - | chr4.1:87677238-87677257 | MS.gene054548:intron | 55.0% |
| AAGACTCGGCAGAGGGTCGT+CGG | + | chr4.1:87677304-87677323 | None:intergenic | 60.0% | |
| GTTGGTTGAAGGTGGAGGCC+AGG | + | chr4.1:87676395-87676414 | None:intergenic | 60.0% | |
| TGTTCACCACAGCTAGCGGG+AGG | - | chr4.1:87677117-87677136 | MS.gene054548:intron | 60.0% | |
| ! | GGAGTATCTTCCGGGTTGCC+GGG | + | chr4.1:87677182-87677201 | None:intergenic | 60.0% |
| GTATCTTCCGGGTTGCCGGG+TGG | + | chr4.1:87677179-87677198 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 87675366 | 87677971 | 87675366 | ID=MS.gene054548 |
| chr4.1 | mRNA | 87675366 | 87677971 | 87675366 | ID=MS.gene054548.t1;Parent=MS.gene054548 |
| chr4.1 | exon | 87677893 | 87677971 | 87677893 | ID=MS.gene054548.t1.exon1;Parent=MS.gene054548.t1 |
| chr4.1 | CDS | 87677893 | 87677971 | 87677893 | ID=cds.MS.gene054548.t1;Parent=MS.gene054548.t1 |
| chr4.1 | exon | 87675883 | 87676208 | 87675883 | ID=MS.gene054548.t1.exon2;Parent=MS.gene054548.t1 |
| chr4.1 | CDS | 87675883 | 87676208 | 87675883 | ID=cds.MS.gene054548.t1;Parent=MS.gene054548.t1 |
| chr4.1 | exon | 87675366 | 87675590 | 87675366 | ID=MS.gene054548.t1.exon3;Parent=MS.gene054548.t1 |
| chr4.1 | CDS | 87675366 | 87675590 | 87675366 | ID=cds.MS.gene054548.t1;Parent=MS.gene054548.t1 |
| Gene Sequence |
| Protein sequence |
