Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66472.t1 | XP_003589053.1 | 68.8 | 432 | 113 | 4 | 1 | 415 | 1 | 427 | 8.90E-47 | 198 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66472.t1 | G7IBC0 | 68.8 | 432 | 113 | 4 | 1 | 415 | 1 | 427 | 6.4e-47 | 198.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene66472 | 0.818383 | 2.02E-52 | -1.69E-46 |
| MS.gene049808 | MS.gene66472 | 0.802755 | 4.83E-49 | -1.69E-46 |
| MS.gene050237 | MS.gene66472 | 0.819438 | 1.16E-52 | -1.69E-46 |
| MS.gene050807 | MS.gene66472 | 0.817328 | 3.49E-52 | -1.69E-46 |
| MS.gene051328 | MS.gene66472 | 0.80939 | 1.94E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene66472 | 0.813986 | 1.94E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene66472 | 0.821115 | 4.79E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene66472 | 0.810077 | 1.38E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene66472 | 0.809881 | 1.52E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene66472 | 0.808203 | 3.48E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene66472 | 0.809776 | 1.60E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene66472 | 0.824516 | 7.74E-54 | -1.69E-46 |
| MS.gene055468 | MS.gene66472 | 0.81766 | 2.94E-52 | -1.69E-46 |
| MS.gene055580 | MS.gene66472 | -0.810891 | 9.20E-51 | -1.69E-46 |
| MS.gene056043 | MS.gene66472 | -0.803431 | 3.50E-49 | -1.69E-46 |
| MS.gene056173 | MS.gene66472 | 0.800716 | 1.27E-48 | -1.69E-46 |
| MS.gene058009 | MS.gene66472 | 0.800101 | 1.69E-48 | -1.69E-46 |
| MS.gene058625 | MS.gene66472 | 0.820101 | 8.20E-53 | -1.69E-46 |
| MS.gene059842 | MS.gene66472 | 0.825819 | 3.81E-54 | -1.69E-46 |
| MS.gene059937 | MS.gene66472 | 0.824316 | 8.62E-54 | -1.69E-46 |
| MS.gene060587 | MS.gene66472 | 0.820931 | 5.28E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66472.t1 | MTR_1g017900 | 72.768 | 448 | 68 | 6 | 1 | 415 | 1 | 427 | 6.57e-175 | 497 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 101 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGATAATGCAACTGATTCT+AGG | 0.201922 | 1.4:+5030341 | MS.gene66472:CDS |
| AAAACAAAAGAGAGTGAAAA+AGG | 0.257941 | 1.4:+5029824 | MS.gene66472:CDS |
| CAGCTCCGGTCACTGATTTC+CGG | 0.280069 | 1.4:-5030300 | None:intergenic |
| GTTTCTAAGTCTAATCATTC+TGG | 0.307209 | 1.4:+5030493 | MS.gene66472:CDS |
| CGATTTCCCGCCGTCTTCAT+TGG | 0.340075 | 1.4:-5030179 | None:intergenic |
| CCGCGGAAATCTTGAGAGTT+TGG | 0.344943 | 1.4:+5030594 | MS.gene66472:CDS |
| AAACGAGTGTAACCGTTTCT+AGG | 0.349506 | 1.4:+5030089 | MS.gene66472:CDS |
| CGGCGATAGAAGCGTTGATC+TGG | 0.365810 | 1.4:+5030684 | MS.gene66472:CDS |
| GTGGAGAATCGTCGTGAAAT+CGG | 0.372507 | 1.4:+5030616 | MS.gene66472:CDS |
| CCGCGGAAATCTTGAGGGTT+TGG | 0.390845 | 1.4:+5030525 | MS.gene66472:CDS |
| TCTTCGCGGTTTCGATCAAC+AGG | 0.406790 | 1.4:-5030118 | None:intergenic |
| CTGAGAATGGAAACCAGAAT+TGG | 0.407083 | 1.4:+5030953 | MS.gene66472:CDS |
| TGAGCGACACGTGGCGGTTG+TGG | 0.420088 | 1.4:+5030063 | MS.gene66472:CDS |
| TTCTGTCTCCATCTCGTCCA+TGG | 0.420281 | 1.4:-5030754 | None:intergenic |
| CAATGAAGACGGCGGGAAAT+CGG | 0.435777 | 1.4:+5030180 | MS.gene66472:CDS |
| GGGAAATCGGTGACTGAAGC+TGG | 0.438338 | 1.4:+5030193 | MS.gene66472:CDS |
| TCGTGAAAACAGGAGGAAAT+CGG | 0.438381 | 1.4:+5030558 | MS.gene66472:CDS |
| TAGAGAATCGTCGTGAAAAC+AGG | 0.439939 | 1.4:+5030548 | MS.gene66472:CDS |
| AGAGGAGGTGTTATTATGTC+TGG | 0.440153 | 1.4:+5031278 | MS.gene66472:CDS |
| ATGAAGTTGAAGAGAAATTG+AGG | 0.445674 | 1.4:+5030914 | MS.gene66472:CDS |
| CGGAAACCTGTGACTGGAGA+TGG | 0.453628 | 1.4:+5030451 | MS.gene66472:CDS |
| CAGAAATCGGTGACCGGAGA+TGG | 0.457915 | 1.4:+5030658 | MS.gene66472:CDS |
| GTAACATAGTTTGAAGGAAG+AGG | 0.460002 | 1.4:-5029956 | None:intergenic |
| TCTTCAACAAGAAGGAAACT+TGG | 0.465191 | 1.4:+5029792 | MS.gene66472:CDS |
| CGGAAATCAGTGACCGGAGC+TGG | 0.468791 | 1.4:+5030301 | MS.gene66472:CDS |
| TTATTGCTGTTGATCAGAAT+CGG | 0.470598 | 1.4:+5030365 | MS.gene66472:CDS |
| TGAAGTTGAAGAGAAATTGA+GGG | 0.478958 | 1.4:+5030915 | MS.gene66472:CDS |
| TAACCGTCGTGGAGTGGTTG+TGG | 0.484680 | 1.4:+5030414 | MS.gene66472:CDS |
| GGATGAAGATGAGCAGAAAT+CGG | 0.491846 | 1.4:+5030645 | MS.gene66472:CDS |
| ACAGAGTTTGGTAATGGAGG+AGG | 0.492296 | 1.4:+5029898 | MS.gene66472:CDS |
| ACCGTCGCGGATTCCAGCTC+CGG | 0.493214 | 1.4:-5030314 | None:intergenic |
| GAGAGAAGAGCAATTGAAGA+AGG | 0.500630 | 1.4:+5030799 | MS.gene66472:CDS |
| TCGCTCAGCTTCAAGAGCGT+TGG | 0.501828 | 1.4:+5029981 | MS.gene66472:CDS |
| TGAAGAAGGTAGTGCTGCTA+AGG | 0.508309 | 1.4:+5030813 | MS.gene66472:CDS |
| TCTATCGCCGATTCCATCTC+CGG | 0.511120 | 1.4:-5030671 | None:intergenic |
| GAAGGTTGCATAAATGATAG+AGG | 0.511876 | 1.4:+5031260 | MS.gene66472:intron |
| GCGAGAGTAACATAGTTTGA+AGG | 0.513620 | 1.4:-5029962 | None:intergenic |
| GCCACGTGTCGCTCATTCAC+TGG | 0.515049 | 1.4:-5030055 | None:intergenic |
| TTATCTGTGAAATCTGAGAA+TGG | 0.516630 | 1.4:+5030940 | MS.gene66472:CDS |
| AATCGCCGCGGAAATCTTGA+GGG | 0.520251 | 1.4:+5030520 | MS.gene66472:CDS |
| CGGAAATCTTGAGAGTTTGG+TGG | 0.521228 | 1.4:+5030597 | MS.gene66472:CDS |
| AGATCAAACCATGGACGAGA+TGG | 0.522177 | 1.4:+5030746 | MS.gene66472:CDS |
| AAGCGTTGATCTGGATGGTA+AGG | 0.522878 | 1.4:+5030693 | MS.gene66472:CDS |
| GCGATTCCATCTCCAGTCAC+AGG | 0.527907 | 1.4:-5030457 | None:intergenic |
| AAAACAGAGTTTGGTAATGG+AGG | 0.536312 | 1.4:+5029895 | MS.gene66472:CDS |
| GATGAGCAGAAATCGGTGAC+CGG | 0.539906 | 1.4:+5030652 | MS.gene66472:CDS |
| GAGAATCGGAAACCTGTGAC+TGG | 0.548443 | 1.4:+5030445 | MS.gene66472:CDS |
| CTGTCGCCAATGAAGACGGC+GGG | 0.551625 | 1.4:+5030173 | MS.gene66472:CDS |
| TAATCGCCGCGGAAATCTTG+AGG | 0.552075 | 1.4:+5030519 | MS.gene66472:CDS |
| ACAGGAGGAAATCGGTTGAT+CGG | 0.552396 | 1.4:+5030566 | MS.gene66472:CDS |
| CTTCAACAAGAAGGAAACTT+GGG | 0.553998 | 1.4:+5029793 | MS.gene66472:CDS |
| GAACAAGAAGGCTAAGGAGA+AGG | 0.556489 | 1.4:+5030774 | MS.gene66472:CDS |
| CATTATCAGCGTTACCGTCG+CGG | 0.557103 | 1.4:-5030327 | None:intergenic |
| GTTGCTGTCGCCAATGAAGA+CGG | 0.559012 | 1.4:+5030169 | MS.gene66472:CDS |
| AGAATGGAAACCAGAATTGG+AGG | 0.560128 | 1.4:+5030956 | MS.gene66472:CDS |
| CAACAACTTCTTCAACAAGA+AGG | 0.561746 | 1.4:+5029784 | MS.gene66472:CDS |
| TGATCGAAACCGCGAAGACT+CGG | 0.562861 | 1.4:+5030123 | MS.gene66472:CDS |
| GGTGGAGAACCGCCGTGCGG+TGG | 0.564140 | 1.4:+5030258 | MS.gene66472:CDS |
| GGTTATCCACCGAGTCTTCG+CGG | 0.564841 | 1.4:-5030132 | None:intergenic |
| CGACAGCAACATGCACCGCA+CGG | 0.567068 | 1.4:-5030156 | None:intergenic |
| GCGTGGAAATCGCGACGACT+CGG | 0.568374 | 1.4:+5030387 | MS.gene66472:CDS |
| CAAGAAGGCTAAGGAGAAGG+AGG | 0.568971 | 1.4:+5030777 | MS.gene66472:CDS |
| GGCGATTAACCGTCGTGGAG+TGG | 0.573109 | 1.4:+5030408 | MS.gene66472:CDS |
| GACAGCCGGAAATCAGTGAC+CGG | 0.574839 | 1.4:+5030295 | MS.gene66472:CDS |
| AGAATGATTAGACTTAGAAA+CGG | 0.575857 | 1.4:-5030491 | None:intergenic |
| CGTAATCGAAGCGGAAATCG+TGG | 0.578277 | 1.4:+5030229 | MS.gene66472:CDS |
| TCGGTGACCGGAGATGGAAT+CGG | 0.578359 | 1.4:+5030664 | MS.gene66472:CDS |
| AACAGGATTAGACCTAGAAA+CGG | 0.582547 | 1.4:-5030101 | None:intergenic |
| CGTTGATCTGGATGGTAAGG+TGG | 0.582643 | 1.4:+5030696 | MS.gene66472:CDS |
| AAGCGGAAATCGTGGTGACT+CGG | 0.584477 | 1.4:+5030237 | MS.gene66472:CDS |
| TTGTGGTGTCTGAAGAGAAT+CGG | 0.584951 | 1.4:+5030431 | MS.gene66472:CDS |
| AGAAGGTAGTGCTGCTAAGG+AGG | 0.589961 | 1.4:+5030816 | MS.gene66472:CDS |
| TGATCTGGATGGTAAGGTGG+AGG | 0.592538 | 1.4:+5030699 | MS.gene66472:CDS |
| GAGACAGAACAAGAAGGCTA+AGG | 0.596287 | 1.4:+5030768 | MS.gene66472:CDS |
| TTGTGAAGTCTGATGACAGC+CGG | 0.620000 | 1.4:+5030281 | MS.gene66472:CDS |
| GATAGAAGCGTTGATCTGGA+TGG | 0.631140 | 1.4:+5030688 | MS.gene66472:CDS |
| CGGAAATCGTGGTGACTCGG+TGG | 0.642181 | 1.4:+5030240 | MS.gene66472:CDS |
| TCGAAACCGCGAAGACTCGG+TGG | 0.646575 | 1.4:+5030126 | MS.gene66472:CDS |
| TCGTCGTGAAATCGGCAAGG+AGG | 0.651246 | 1.4:+5030624 | MS.gene66472:CDS |
| ACCGGAGCTGGAATCCGCGA+CGG | 0.653935 | 1.4:+5030313 | MS.gene66472:CDS |
| ACCAGTGAATGAGCGACACG+TGG | 0.662036 | 1.4:+5030054 | MS.gene66472:CDS |
| GAATCGTCGTGAAATCGGCA+AGG | 0.665479 | 1.4:+5030621 | MS.gene66472:CDS |
| GCTGATTATCGTAATCGAAG+CGG | 0.669531 | 1.4:+5030220 | MS.gene66472:CDS |
| AGAAGAAGAAGATCAAACCA+TGG | 0.670595 | 1.4:+5030737 | MS.gene66472:CDS |
| GGTTGCATAAATGATAGAGG+AGG | 0.672816 | 1.4:+5031263 | MS.gene66472:intron |
| AGAATCGTCGTGAAAACAGG+AGG | 0.672820 | 1.4:+5030551 | MS.gene66472:CDS |
| CAGACTTCACAACCACCGCA+CGG | 0.675060 | 1.4:-5030270 | None:intergenic |
| AGTGAATGAGCGACACGTGG+CGG | 0.675940 | 1.4:+5030057 | MS.gene66472:CDS |
| GACTCGGCGATTAACCGTCG+TGG | 0.687215 | 1.4:+5030403 | MS.gene66472:CDS |
| GCTGTCGCCAATGAAGACGG+CGG | 0.688308 | 1.4:+5030172 | MS.gene66472:CDS |
| CAGCAACATGCACCGCACGG+CGG | 0.691321 | 1.4:-5030153 | None:intergenic |
| CTCGGTGGAGAACCGCCGTG+CGG | 0.692421 | 1.4:+5030255 | MS.gene66472:CDS |
| GCTGTTGATCAGAATCGGCG+TGG | 0.701988 | 1.4:+5030370 | MS.gene66472:CDS |
| CCAAACTCTCAAGATTTCCG+CGG | 0.706080 | 1.4:-5030594 | None:intergenic |
| CTCGGTGGATAACCGCCGTG+CGG | 0.709258 | 1.4:+5030141 | MS.gene66472:CDS |
| CCAAACCCTCAAGATTTCCG+CGG | 0.710817 | 1.4:-5030525 | None:intergenic |
| TCGGTTGATCGGAATCGCCG+CGG | 0.719041 | 1.4:+5030577 | MS.gene66472:CDS |
| CATTCTGGTCGTAATCGCCG+CGG | 0.722423 | 1.4:+5030508 | MS.gene66472:CDS |
| GAGATGGAGACAGAACAAGA+AGG | 0.742489 | 1.4:+5030762 | MS.gene66472:CDS |
| ACACCACAACCACTCCACGA+CGG | 0.744561 | 1.4:-5030417 | None:intergenic |
| ACTTCACAACCACCGCACGG+CGG | 0.798210 | 1.4:-5030267 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTCATTAATTTTAG+TGG | + | chr1.4:5031191-5031210 | MS.gene66472:intron | 10.0% |
| !! | AAAAAATCAACTAGAAAAAA+AGG | + | chr1.4:5030021-5030040 | MS.gene66472:CDS | 15.0% |
| !! | AAAGATAAAGAAAAAGAAAA+AGG | + | chr1.4:5029848-5029867 | MS.gene66472:CDS | 15.0% |
| !!! | TCATTAATTTTAGTGGATTA+TGG | + | chr1.4:5031198-5031217 | MS.gene66472:intron | 20.0% |
| ! | AAAAAAACAGAGTTTGGTAA+TGG | + | chr1.4:5029892-5029911 | MS.gene66472:CDS | 25.0% |
| ! | AAAACAAAAGAGAGTGAAAA+AGG | + | chr1.4:5029824-5029843 | MS.gene66472:CDS | 25.0% |
| ! | AAATCAACTAGAAAAAAAGG+AGG | + | chr1.4:5030024-5030043 | MS.gene66472:CDS | 25.0% |
| ! | AGAAGAAAAAAAACAGAGTT+TGG | + | chr1.4:5029886-5029905 | MS.gene66472:CDS | 25.0% |
| ! | AGAATGATTAGACTTAGAAA+CGG | - | chr1.4:5030494-5030513 | None:intergenic | 25.0% |
| ! | TAGTGATATGATATGATTGA+AGG | + | chr1.4:5031242-5031261 | MS.gene66472:intron | 25.0% |
| AACTATGGTATGAGAAAGAA+TGG | + | chr1.4:5030991-5031010 | MS.gene66472:intron | 30.0% | |
| AGGTTCAGAAAAATGAACTA+TGG | + | chr1.4:5030976-5030995 | MS.gene66472:CDS | 30.0% | |
| ATGAAGTTGAAGAGAAATTG+AGG | + | chr1.4:5030914-5030933 | MS.gene66472:CDS | 30.0% | |
| GTTTCTAAGTCTAATCATTC+TGG | + | chr1.4:5030493-5030512 | MS.gene66472:CDS | 30.0% | |
| TGAAGTTGAAGAGAAATTGA+GGG | + | chr1.4:5030915-5030934 | MS.gene66472:CDS | 30.0% | |
| TTATCTGTGAAATCTGAGAA+TGG | + | chr1.4:5030940-5030959 | MS.gene66472:CDS | 30.0% | |
| ! | TTATTGCTGTTGATCAGAAT+CGG | + | chr1.4:5030365-5030384 | MS.gene66472:CDS | 30.0% |
| AACAGGATTAGACCTAGAAA+CGG | - | chr1.4:5030104-5030123 | None:intergenic | 35.0% | |
| AGAAGAAGAAGATCAAACCA+TGG | + | chr1.4:5030737-5030756 | MS.gene66472:CDS | 35.0% | |
| CAACAACTTCTTCAACAAGA+AGG | + | chr1.4:5029784-5029803 | MS.gene66472:CDS | 35.0% | |
| CTTCAACAAGAAGGAAACTT+GGG | + | chr1.4:5029793-5029812 | MS.gene66472:CDS | 35.0% | |
| GAAGGTTGCATAAATGATAG+AGG | + | chr1.4:5031260-5031279 | MS.gene66472:intron | 35.0% | |
| GGAGAAATTGAGACATAGTT+TGG | + | chr1.4:5031156-5031175 | MS.gene66472:intron | 35.0% | |
| GTAACATAGTTTGAAGGAAG+AGG | - | chr1.4:5029959-5029978 | None:intergenic | 35.0% | |
| TCTTCAACAAGAAGGAAACT+TGG | + | chr1.4:5029792-5029811 | MS.gene66472:CDS | 35.0% | |
| ! | CTGATAATGCAACTGATTCT+AGG | + | chr1.4:5030341-5030360 | MS.gene66472:CDS | 35.0% |
| ! | TTTTTCTGAACCTCCAATTC+TGG | - | chr1.4:5030969-5030988 | None:intergenic | 35.0% |
| !! | AAAACAGAGTTTGGTAATGG+AGG | + | chr1.4:5029895-5029914 | MS.gene66472:CDS | 35.0% |
| !! | AACAACAAAGCTCTAAGACT+TGG | + | chr1.4:5031112-5031131 | MS.gene66472:intron | 35.0% |
| !! | ACAACAAAGCTCTAAGACTT+GGG | + | chr1.4:5031113-5031132 | MS.gene66472:intron | 35.0% |
| AAACGAGTGTAACCGTTTCT+AGG | + | chr1.4:5030089-5030108 | MS.gene66472:CDS | 40.0% | |
| AGAATGGAAACCAGAATTGG+AGG | + | chr1.4:5030956-5030975 | MS.gene66472:CDS | 40.0% | |
| CCTTAAAATTCCTATGCCCA+TGG | - | chr1.4:5031092-5031111 | None:intergenic | 40.0% | |
| CTGAGAATGGAAACCAGAAT+TGG | + | chr1.4:5030953-5030972 | MS.gene66472:CDS | 40.0% | |
| GAGAGAAGAGCAATTGAAGA+AGG | + | chr1.4:5030799-5030818 | MS.gene66472:CDS | 40.0% | |
| GCGAGAGTAACATAGTTTGA+AGG | - | chr1.4:5029965-5029984 | None:intergenic | 40.0% | |
| GCTGATTATCGTAATCGAAG+CGG | + | chr1.4:5030220-5030239 | MS.gene66472:CDS | 40.0% | |
| GGATGAAGATGAGCAGAAAT+CGG | + | chr1.4:5030645-5030664 | MS.gene66472:CDS | 40.0% | |
| GGTATGAGAAAGAATGGTGA+TGG | + | chr1.4:5030997-5031016 | MS.gene66472:intron | 40.0% | |
| GGTTGCATAAATGATAGAGG+AGG | + | chr1.4:5031263-5031282 | MS.gene66472:intron | 40.0% | |
| TAGAGAATCGTCGTGAAAAC+AGG | + | chr1.4:5030548-5030567 | MS.gene66472:CDS | 40.0% | |
| TCGTGAAAACAGGAGGAAAT+CGG | + | chr1.4:5030558-5030577 | MS.gene66472:CDS | 40.0% | |
| TTGTGGTGTCTGAAGAGAAT+CGG | + | chr1.4:5030431-5030450 | MS.gene66472:CDS | 40.0% | |
| ! | CCATGGGCATAGGAATTTTA+AGG | + | chr1.4:5031089-5031108 | MS.gene66472:intron | 40.0% |
| !! | AGAGGAGGTGTTATTATGTC+TGG | + | chr1.4:5031278-5031297 | MS.gene66472:CDS | 40.0% |
| AAGACTTGGGTGAAGAAGGA+TGG | + | chr1.4:5031126-5031145 | MS.gene66472:intron | 45.0% | |
| ACAGGAGGAAATCGGTTGAT+CGG | + | chr1.4:5030566-5030585 | MS.gene66472:CDS | 45.0% | |
| AGAATCGTCGTGAAAACAGG+AGG | + | chr1.4:5030551-5030570 | MS.gene66472:CDS | 45.0% | |
| AGATCAAACCATGGACGAGA+TGG | + | chr1.4:5030746-5030765 | MS.gene66472:CDS | 45.0% | |
| CCAAACTCTCAAGATTTCCG+CGG | - | chr1.4:5030597-5030616 | None:intergenic | 45.0% | |
| CGGAAATCTTGAGAGTTTGG+TGG | + | chr1.4:5030597-5030616 | MS.gene66472:CDS | 45.0% | |
| GAACAAGAAGGCTAAGGAGA+AGG | + | chr1.4:5030774-5030793 | MS.gene66472:CDS | 45.0% | |
| GAGACAGAACAAGAAGGCTA+AGG | + | chr1.4:5030768-5030787 | MS.gene66472:CDS | 45.0% | |
| GAGATGGAGACAGAACAAGA+AGG | + | chr1.4:5030762-5030781 | MS.gene66472:CDS | 45.0% | |
| GTGGAGAATCGTCGTGAAAT+CGG | + | chr1.4:5030616-5030635 | MS.gene66472:CDS | 45.0% | |
| TTGTGAAGTCTGATGACAGC+CGG | + | chr1.4:5030281-5030300 | MS.gene66472:CDS | 45.0% | |
| ! | TGAAGAAGGTAGTGCTGCTA+AGG | + | chr1.4:5030813-5030832 | MS.gene66472:CDS | 45.0% |
| !! | AAGCGTTGATCTGGATGGTA+AGG | + | chr1.4:5030693-5030712 | MS.gene66472:CDS | 45.0% |
| !! | ACAGAGTTTGGTAATGGAGG+AGG | + | chr1.4:5029898-5029917 | MS.gene66472:CDS | 45.0% |
| !! | AGAAAGAATGGTGATGGCGA+TGG | + | chr1.4:5031003-5031022 | MS.gene66472:intron | 45.0% |
| !! | CTCTAAGACTTGGGTGAAGA+AGG | + | chr1.4:5031122-5031141 | MS.gene66472:intron | 45.0% |
| !! | GATAGAAGCGTTGATCTGGA+TGG | + | chr1.4:5030688-5030707 | MS.gene66472:CDS | 45.0% |
| AAGCGGAAATCGTGGTGACT+CGG | + | chr1.4:5030237-5030256 | MS.gene66472:CDS | 50.0% | |
| AATCGCCGCGGAAATCTTGA+GGG | + | chr1.4:5030520-5030539 | MS.gene66472:CDS | 50.0% | |
| ATGGGCATAGACATGGCCAT+GGG | + | chr1.4:5031052-5031071 | MS.gene66472:intron | 50.0% | |
| CAAGAAGGCTAAGGAGAAGG+AGG | + | chr1.4:5030777-5030796 | MS.gene66472:CDS | 50.0% | |
| CAATGAAGACGGCGGGAAAT+CGG | + | chr1.4:5030180-5030199 | MS.gene66472:CDS | 50.0% | |
| CATTATCAGCGTTACCGTCG+CGG | - | chr1.4:5030330-5030349 | None:intergenic | 50.0% | |
| CCAAACCCTCAAGATTTCCG+CGG | - | chr1.4:5030528-5030547 | None:intergenic | 50.0% | |
| CCGCGGAAATCTTGAGAGTT+TGG | + | chr1.4:5030594-5030613 | MS.gene66472:CDS | 50.0% | |
| CGTAATCGAAGCGGAAATCG+TGG | + | chr1.4:5030229-5030248 | MS.gene66472:CDS | 50.0% | |
| CGTTGATCTGGATGGTAAGG+TGG | + | chr1.4:5030696-5030715 | MS.gene66472:CDS | 50.0% | |
| GAATCGTCGTGAAATCGGCA+AGG | + | chr1.4:5030621-5030640 | MS.gene66472:CDS | 50.0% | |
| GAGAATCGGAAACCTGTGAC+TGG | + | chr1.4:5030445-5030464 | MS.gene66472:CDS | 50.0% | |
| GATGAGCAGAAATCGGTGAC+CGG | + | chr1.4:5030652-5030671 | MS.gene66472:CDS | 50.0% | |
| GATGGTGACCATCAAGGTGA+TGG | + | chr1.4:5031021-5031040 | MS.gene66472:intron | 50.0% | |
| GTGAAGAAGGATGGCAGTGT+TGG | + | chr1.4:5031135-5031154 | MS.gene66472:intron | 50.0% | |
| GTTGCTGTCGCCAATGAAGA+CGG | + | chr1.4:5030169-5030188 | MS.gene66472:CDS | 50.0% | |
| TAATCGCCGCGGAAATCTTG+AGG | + | chr1.4:5030519-5030538 | MS.gene66472:CDS | 50.0% | |
| TCTTCGCGGTTTCGATCAAC+AGG | - | chr1.4:5030121-5030140 | None:intergenic | 50.0% | |
| TGATCGAAACCGCGAAGACT+CGG | + | chr1.4:5030123-5030142 | MS.gene66472:CDS | 50.0% | |
| TGATCTGGATGGTAAGGTGG+AGG | + | chr1.4:5030699-5030718 | MS.gene66472:CDS | 50.0% | |
| TTCTGTCTCCATCTCGTCCA+TGG | - | chr1.4:5030757-5030776 | None:intergenic | 50.0% | |
| ! | AGAAGGTAGTGCTGCTAAGG+AGG | + | chr1.4:5030816-5030835 | MS.gene66472:CDS | 50.0% |
| !! | TCTATCGCCGATTCCATCTC+CGG | - | chr1.4:5030674-5030693 | None:intergenic | 50.0% |
| ACACCACAACCACTCCACGA+CGG | - | chr1.4:5030420-5030439 | None:intergenic | 55.0% | |
| ACCAGTGAATGAGCGACACG+TGG | + | chr1.4:5030054-5030073 | MS.gene66472:CDS | 55.0% | |
| AGTGAATGAGCGACACGTGG+CGG | + | chr1.4:5030057-5030076 | MS.gene66472:CDS | 55.0% | |
| CAGAAATCGGTGACCGGAGA+TGG | + | chr1.4:5030658-5030677 | MS.gene66472:CDS | 55.0% | |
| CAGACTTCACAACCACCGCA+CGG | - | chr1.4:5030273-5030292 | None:intergenic | 55.0% | |
| CATAGACATGGCCATGGGCA+TGG | + | chr1.4:5031057-5031076 | MS.gene66472:intron | 55.0% | |
| CATGGCCATGGGCATAGACA+TGG | + | chr1.4:5031045-5031064 | MS.gene66472:intron | 55.0% | |
| CATGGCCATGTCTATGCCCA+TGG | - | chr1.4:5031053-5031072 | None:intergenic | 55.0% | |
| CATGGGCATAGACATGGCCA+TGG | + | chr1.4:5031051-5031070 | MS.gene66472:intron | 55.0% | |
| CATGTCTATGCCCATGGCCA+TGG | - | chr1.4:5031047-5031066 | None:intergenic | 55.0% | |
| CATTCTGGTCGTAATCGCCG+CGG | + | chr1.4:5030508-5030527 | MS.gene66472:CDS | 55.0% | |
| CCGCGGAAATCTTGAGGGTT+TGG | + | chr1.4:5030525-5030544 | MS.gene66472:CDS | 55.0% | |
| CGATTTCCCGCCGTCTTCAT+TGG | - | chr1.4:5030182-5030201 | None:intergenic | 55.0% | |
| CGGAAACCTGTGACTGGAGA+TGG | + | chr1.4:5030451-5030470 | MS.gene66472:CDS | 55.0% | |
| GACAGCCGGAAATCAGTGAC+CGG | + | chr1.4:5030295-5030314 | MS.gene66472:CDS | 55.0% | |
| GATGGCGATGGTGACCATCA+AGG | + | chr1.4:5031015-5031034 | MS.gene66472:intron | 55.0% | |
| GCGATTCCATCTCCAGTCAC+AGG | - | chr1.4:5030460-5030479 | None:intergenic | 55.0% | |
| GCTGTTGATCAGAATCGGCG+TGG | + | chr1.4:5030370-5030389 | MS.gene66472:CDS | 55.0% | |
| GGGAAATCGGTGACTGAAGC+TGG | + | chr1.4:5030193-5030212 | MS.gene66472:CDS | 55.0% | |
| GGTTATCCACCGAGTCTTCG+CGG | - | chr1.4:5030135-5030154 | None:intergenic | 55.0% | |
| TAACCGTCGTGGAGTGGTTG+TGG | + | chr1.4:5030414-5030433 | MS.gene66472:CDS | 55.0% | |
| TCGGTGACCGGAGATGGAAT+CGG | + | chr1.4:5030664-5030683 | MS.gene66472:CDS | 55.0% | |
| TCGTCGTGAAATCGGCAAGG+AGG | + | chr1.4:5030624-5030643 | MS.gene66472:CDS | 55.0% | |
| ! | AAGGTGATGGCCATGGCCAT+GGG | + | chr1.4:5031034-5031053 | MS.gene66472:intron | 55.0% |
| ! | GACCATCAAGGTGATGGCCA+TGG | + | chr1.4:5031027-5031046 | MS.gene66472:intron | 55.0% |
| ! | TCGCTCAGCTTCAAGAGCGT+TGG | + | chr1.4:5029981-5030000 | MS.gene66472:CDS | 55.0% |
| !! | CAGCTCCGGTCACTGATTTC+CGG | - | chr1.4:5030303-5030322 | None:intergenic | 55.0% |
| !! | CGGCGATAGAAGCGTTGATC+TGG | + | chr1.4:5030684-5030703 | MS.gene66472:CDS | 55.0% |
| ACTTCACAACCACCGCACGG+CGG | - | chr1.4:5030270-5030289 | None:intergenic | 60.0% | |
| CATGGCCATGGGCATGGTCA+TGG | + | chr1.4:5031063-5031082 | MS.gene66472:intron | 60.0% | |
| CGACAGCAACATGCACCGCA+CGG | - | chr1.4:5030159-5030178 | None:intergenic | 60.0% | |
| CGGAAATCAGTGACCGGAGC+TGG | + | chr1.4:5030301-5030320 | MS.gene66472:CDS | 60.0% | |
| CTGTCGCCAATGAAGACGGC+GGG | + | chr1.4:5030173-5030192 | MS.gene66472:CDS | 60.0% | |
| GACTCGGCGATTAACCGTCG+TGG | + | chr1.4:5030403-5030422 | MS.gene66472:CDS | 60.0% | |
| GCGTGGAAATCGCGACGACT+CGG | + | chr1.4:5030387-5030406 | MS.gene66472:CDS | 60.0% | |
| GCTGTCGCCAATGAAGACGG+CGG | + | chr1.4:5030172-5030191 | MS.gene66472:CDS | 60.0% | |
| GGCATGGTCATGGTGGCCAT+GGG | + | chr1.4:5031073-5031092 | MS.gene66472:intron | 60.0% | |
| GGCCATGGCCATCACCTTGA+TGG | - | chr1.4:5031032-5031051 | None:intergenic | 60.0% | |
| GGCGATTAACCGTCGTGGAG+TGG | + | chr1.4:5030408-5030427 | MS.gene66472:CDS | 60.0% | |
| GTCATGGTGGCCATGGGCAT+AGG | + | chr1.4:5031079-5031098 | MS.gene66472:intron | 60.0% | |
| TCGAAACCGCGAAGACTCGG+TGG | + | chr1.4:5030126-5030145 | MS.gene66472:CDS | 60.0% | |
| TCGGTTGATCGGAATCGCCG+CGG | + | chr1.4:5030577-5030596 | MS.gene66472:CDS | 60.0% | |
| ! | CAAGGTGATGGCCATGGCCA+TGG | + | chr1.4:5031033-5031052 | MS.gene66472:intron | 60.0% |
| ! | CGGAAATCGTGGTGACTCGG+TGG | + | chr1.4:5030240-5030259 | MS.gene66472:CDS | 60.0% |
| ! | GCCACGTGTCGCTCATTCAC+TGG | - | chr1.4:5030058-5030077 | None:intergenic | 60.0% |
| ACCGGAGCTGGAATCCGCGA+CGG | + | chr1.4:5030313-5030332 | MS.gene66472:CDS | 65.0% | |
| ACCGTCGCGGATTCCAGCTC+CGG | - | chr1.4:5030317-5030336 | None:intergenic | 65.0% | |
| CAGCAACATGCACCGCACGG+CGG | - | chr1.4:5030156-5030175 | None:intergenic | 65.0% | |
| CTCGGTGGATAACCGCCGTG+CGG | + | chr1.4:5030141-5030160 | MS.gene66472:CDS | 65.0% | |
| GGCCACCATGACCATGCCCA+TGG | - | chr1.4:5031071-5031090 | None:intergenic | 65.0% | |
| GGCCATGGGCATGGTCATGG+TGG | + | chr1.4:5031066-5031085 | MS.gene66472:intron | 65.0% | |
| GGGCATGGTCATGGTGGCCA+TGG | + | chr1.4:5031072-5031091 | MS.gene66472:intron | 65.0% | |
| TGAGCGACACGTGGCGGTTG+TGG | + | chr1.4:5030063-5030082 | MS.gene66472:CDS | 65.0% | |
| CTCGGTGGAGAACCGCCGTG+CGG | + | chr1.4:5030255-5030274 | MS.gene66472:CDS | 70.0% | |
| GGTGGAGAACCGCCGTGCGG+TGG | + | chr1.4:5030258-5030277 | MS.gene66472:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 5029767 | 5031304 | 5029767 | ID=MS.gene66472 |
| chr1.4 | mRNA | 5029767 | 5031304 | 5029767 | ID=MS.gene66472.t1;Parent=MS.gene66472 |
| chr1.4 | exon | 5029767 | 5030997 | 5029767 | ID=MS.gene66472.t1.exon1;Parent=MS.gene66472.t1 |
| chr1.4 | CDS | 5029767 | 5030997 | 5029767 | ID=cds.MS.gene66472.t1;Parent=MS.gene66472.t1 |
| chr1.4 | exon | 5031264 | 5031304 | 5031264 | ID=MS.gene66472.t1.exon2;Parent=MS.gene66472.t1 |
| chr1.4 | CDS | 5031264 | 5031304 | 5031264 | ID=cds.MS.gene66472.t1;Parent=MS.gene66472.t1 |
| Gene Sequence |
| Protein sequence |
