Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66860.t1 | XP_013443501.1 | 97.4 | 643 | 14 | 2 | 1 | 643 | 1 | 640 | 0.00E+00 | 1223.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66860.t1 | Q9SI52 | 69.1 | 664 | 170 | 11 | 1 | 643 | 1 | 650 | 2.3e-244 | 846.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66860.t1 | A0A072TK16 | 97.4 | 643 | 14 | 2 | 1 | 643 | 1 | 640 | 0.0e+00 | 1223.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene66860 | MS.gene009056 | PPI |
| MS.gene66860 | MS.gene62152 | PPI |
| MS.gene66860 | MS.gene61052 | PPI |
| MS.gene58968 | MS.gene66860 | PPI |
| MS.gene66860 | MS.gene029676 | PPI |
| MS.gene66860 | MS.gene038501 | PPI |
| MS.gene66860 | MS.gene71236 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66860.t1 | MTR_0009s0120 | 97.667 | 643 | 12 | 2 | 1 | 643 | 1 | 640 | 0.0 | 1290 |
| MS.gene66860.t1 | MTR_8g066090 | 77.589 | 647 | 134 | 5 | 1 | 643 | 1 | 640 | 0.0 | 985 |
| MS.gene66860.t1 | MTR_7g017360 | 66.230 | 610 | 195 | 6 | 36 | 643 | 32 | 632 | 0.0 | 789 |
| MS.gene66860.t1 | MTR_5g009120 | 40.187 | 321 | 167 | 6 | 152 | 459 | 254 | 562 | 1.14e-62 | 218 |
| MS.gene66860.t1 | MTR_8g099565 | 40.952 | 315 | 159 | 7 | 158 | 459 | 273 | 573 | 2.80e-62 | 217 |
| MS.gene66860.t1 | MTR_3g091400 | 39.535 | 301 | 152 | 7 | 148 | 431 | 247 | 534 | 9.49e-59 | 207 |
| MS.gene66860.t1 | MTR_8g027610 | 39.731 | 297 | 141 | 8 | 155 | 431 | 269 | 547 | 1.99e-58 | 207 |
| MS.gene66860.t1 | MTR_7g117395 | 41.135 | 282 | 132 | 7 | 166 | 431 | 284 | 547 | 1.79e-56 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66860.t1 | AT2G03890 | 68.223 | 664 | 176 | 11 | 1 | 643 | 1 | 650 | 0.0 | 874 |
| MS.gene66860.t1 | AT1G26270 | 67.747 | 648 | 186 | 11 | 1 | 643 | 1 | 630 | 0.0 | 855 |
| MS.gene66860.t1 | AT1G13640 | 65.888 | 642 | 188 | 10 | 13 | 643 | 1 | 622 | 0.0 | 817 |
| MS.gene66860.t1 | AT1G13640 | 65.888 | 642 | 188 | 10 | 13 | 643 | 1 | 622 | 0.0 | 817 |
| MS.gene66860.t1 | AT2G03890 | 62.633 | 471 | 145 | 9 | 187 | 643 | 77 | 530 | 0.0 | 546 |
| MS.gene66860.t1 | AT2G03890 | 66.667 | 105 | 24 | 3 | 1 | 98 | 1 | 101 | 4.52e-33 | 134 |
| MS.gene66860.t1 | AT3G56600 | 40.653 | 551 | 247 | 10 | 108 | 643 | 48 | 533 | 9.16e-122 | 372 |
| MS.gene66860.t1 | AT3G56600 | 40.653 | 551 | 247 | 10 | 108 | 643 | 51 | 536 | 1.22e-121 | 372 |
| MS.gene66860.t1 | AT3G56600 | 40.653 | 551 | 247 | 10 | 108 | 643 | 51 | 536 | 1.22e-121 | 372 |
| MS.gene66860.t1 | AT2G40850 | 41.697 | 542 | 259 | 14 | 112 | 643 | 67 | 561 | 4.37e-121 | 371 |
| MS.gene66860.t1 | AT5G24240 | 39.941 | 338 | 168 | 9 | 148 | 472 | 242 | 557 | 1.87e-64 | 223 |
| MS.gene66860.t1 | AT5G24240 | 39.941 | 338 | 168 | 9 | 148 | 472 | 242 | 557 | 1.87e-64 | 223 |
| MS.gene66860.t1 | AT2G46500 | 35.363 | 427 | 213 | 11 | 47 | 431 | 115 | 520 | 5.72e-64 | 221 |
| MS.gene66860.t1 | AT2G46500 | 35.363 | 427 | 213 | 11 | 47 | 431 | 115 | 520 | 5.72e-64 | 221 |
| MS.gene66860.t1 | AT2G46500 | 31.104 | 299 | 148 | 10 | 47 | 303 | 115 | 397 | 2.02e-23 | 103 |
Find 183 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAAGTTTCTCTGATTAA+AGG | 0.184139 | 5.3:+35348005 | None:intergenic |
| CTCAAAGAGGCTGCTGAATT+TGG | 0.201939 | 5.3:-35348251 | MS.gene66860:CDS |
| TAAGGATCCTCCAAAGTTTC+TGG | 0.229441 | 5.3:+35348437 | None:intergenic |
| CTCAATGCTCTCATCCAATT+TGG | 0.245000 | 5.3:+35347944 | None:intergenic |
| GGATCCTCCATTGCCATCTT+TGG | 0.251549 | 5.3:+35348026 | None:intergenic |
| ATCGATCCGGTTCCTGTTAA+TGG | 0.258185 | 5.3:-35348992 | MS.gene66860:CDS |
| GGTCTTTGTCTTGCTGAAAT+TGG | 0.272049 | 5.3:-35348230 | MS.gene66860:CDS |
| GTATAGGGATATTAGATATT+AGG | 0.275793 | 5.3:-35348571 | MS.gene66860:CDS |
| AGGTCAATGGGAATTGTTTC+CGG | 0.281282 | 5.3:-35348700 | MS.gene66860:CDS |
| TCATCACTTCAACTGCCATC+TGG | 0.288451 | 5.3:+35349449 | None:intergenic |
| CGAACTTGAGGTTGTTTGTT+TGG | 0.290157 | 5.3:-35348162 | MS.gene66860:CDS |
| GAAGAATCTCCTCAGGAATT+TGG | 0.298437 | 5.3:-35347900 | MS.gene66860:CDS |
| TCGTCTCCCACCTCAGTTCT+TGG | 0.299253 | 5.3:+35348098 | None:intergenic |
| CTTTACCAACAAAACCTTTA+GGG | 0.300434 | 5.3:+35348876 | None:intergenic |
| GAAGAGAGTTCTCTTACTTT+TGG | 0.300456 | 5.3:-35349241 | MS.gene66860:CDS |
| GCCAAGCACACAACCCTTAT+CGG | 0.314484 | 5.3:+35349336 | None:intergenic |
| CAATGAATCCACTCAAAATA+AGG | 0.318986 | 5.3:+35348419 | None:intergenic |
| GGAGGTTGCGGCTTATCTTC+TGG | 0.319111 | 5.3:-35348798 | MS.gene66860:CDS |
| GAGTGGTCCTATTGAAATAT+TGG | 0.322225 | 5.3:-35349083 | MS.gene66860:CDS |
| ATTACGAAGCTTATGCTTGC+AGG | 0.325291 | 5.3:+35347714 | None:intergenic |
| TTTCAGCATGCACTTGGAAA+TGG | 0.327037 | 5.3:-35347987 | MS.gene66860:CDS |
| ACAAAACCTTTAGGGTTATT+AGG | 0.334352 | 5.3:+35348884 | None:intergenic |
| GCTTTACCAACAAAACCTTT+AGG | 0.335363 | 5.3:+35348875 | None:intergenic |
| ACTCCTTGTTTGTCCCCAAC+TGG | 0.339211 | 5.3:-35349130 | MS.gene66860:CDS |
| AGTGGTCCTATTGAAATATT+GGG | 0.341072 | 5.3:-35349082 | MS.gene66860:CDS |
| GAAACACTCTGGAGGAAAAC+TGG | 0.352141 | 5.3:-35347793 | MS.gene66860:CDS |
| GCTGGATATCCCTCCCAGTT+GGG | 0.353656 | 5.3:+35349116 | None:intergenic |
| GGTGATGGCATTGGAACTTT+TGG | 0.354061 | 5.3:-35348500 | MS.gene66860:CDS |
| GCGTAGCCCACTCTCCAAAT+TGG | 0.354749 | 5.3:-35347958 | MS.gene66860:CDS |
| TCATGGTACGTCGAGCTTCC+CGG | 0.361544 | 5.3:-35348609 | MS.gene66860:CDS |
| GATTGCCCCAATATTTCAAT+AGG | 0.361720 | 5.3:+35349076 | None:intergenic |
| GACCACTCTTATCCCTTTGC+TGG | 0.361794 | 5.3:+35349098 | None:intergenic |
| GTTGCTTCGGTGCATCGTAT+AGG | 0.369514 | 5.3:-35348587 | MS.gene66860:CDS |
| CCTCCAAGCCCACCATTAAC+AGG | 0.381577 | 5.3:+35348980 | None:intergenic |
| ATATTACTCAACTTCAAAAC+TGG | 0.381955 | 5.3:+35347559 | None:intergenic |
| GTTCCTGTTAATGGTGGGCT+TGG | 0.393474 | 5.3:-35348983 | MS.gene66860:CDS |
| CCTGTTAATGGTGGGCTTGG+AGG | 0.395549 | 5.3:-35348980 | MS.gene66860:CDS |
| TTGCTTCGGTGCATCGTATA+GGG | 0.398997 | 5.3:-35348586 | MS.gene66860:CDS |
| TCCTCCCAGCAGGTTGCCTC+TGG | 0.399427 | 5.3:+35349377 | None:intergenic |
| ACTGCCATCTGGGTCTGAAC+TGG | 0.399575 | 5.3:+35349460 | None:intergenic |
| AACTTGTTAGTTAGAAAAGT+TGG | 0.401570 | 5.3:-35348521 | MS.gene66860:CDS |
| CGGGGTTGAAACGATCTGTT+CGG | 0.410422 | 5.3:-35348841 | MS.gene66860:CDS |
| TTGTGTGCTTGGCATGGAAT+TGG | 0.413437 | 5.3:-35349326 | MS.gene66860:CDS |
| TTCAGCATGCACTTGGAAAT+GGG | 0.413808 | 5.3:-35347986 | MS.gene66860:CDS |
| ACCGATAAGGGTTGTGTGCT+TGG | 0.414023 | 5.3:-35349337 | MS.gene66860:CDS |
| TGATGACTCGCGAGTTCTAC+AGG | 0.416969 | 5.3:-35348202 | MS.gene66860:CDS |
| CCTTGATGTGATGAAACTTA+TGG | 0.418417 | 5.3:-35349047 | MS.gene66860:CDS |
| GTCGAGCTTCCCGGTTGCTT+CGG | 0.419259 | 5.3:-35348600 | MS.gene66860:CDS |
| AGACAAGCCTCTCGAATCAT+TGG | 0.420945 | 5.3:+35348302 | None:intergenic |
| CATCACTTCAACTGCCATCT+GGG | 0.423030 | 5.3:+35349450 | None:intergenic |
| AGGTTGTTTGTTTGGAGGCA+AGG | 0.426134 | 5.3:-35348154 | MS.gene66860:CDS |
| AGACAGAGCCCATGATCAAT+AGG | 0.433939 | 5.3:+35348461 | None:intergenic |
| TGCTGGATATCCCTCCCAGT+TGG | 0.434243 | 5.3:+35349115 | None:intergenic |
| ATACGATGCACCGAAGCAAC+CGG | 0.435535 | 5.3:+35348590 | None:intergenic |
| TTTGATATTGATTGCGATGA+AGG | 0.436204 | 5.3:-35348065 | MS.gene66860:CDS |
| TGAGAGCATTGAGGAGGAAG+AGG | 0.438129 | 5.3:-35347934 | MS.gene66860:CDS |
| GTTTCAAGAGTTGCTGTATC+CGG | 0.439521 | 5.3:-35347646 | MS.gene66860:CDS |
| AGCATCTCGCAGTCATGAGC+AGG | 0.441218 | 5.3:+35348338 | None:intergenic |
| AGCCCACCATTAACAGGAAC+CGG | 0.441803 | 5.3:+35348986 | None:intergenic |
| GAGCTAATTCCTATTGATCA+TGG | 0.442901 | 5.3:-35348470 | MS.gene66860:CDS |
| GTAAGAGAACTCTCTTCAAC+AGG | 0.443142 | 5.3:+35349247 | None:intergenic |
| TGCTAACAAGTCTCTTTCTC+CGG | 0.444378 | 5.3:+35348681 | None:intergenic |
| GGGGTTGAAACGATCTGTTC+GGG | 0.447342 | 5.3:-35348840 | MS.gene66860:CDS |
| AATGTCAATGATGAGGTCAA+TGG | 0.447940 | 5.3:-35348713 | MS.gene66860:CDS |
| GCACACAACCCTTATCGGTT+TGG | 0.448229 | 5.3:+35349341 | None:intergenic |
| CTGCCTCTGCTTCTGTCCTA+AGG | 0.450532 | 5.3:+35347599 | None:intergenic |
| ATTGTGAAGGCGATTAAGAT+GGG | 0.451455 | 5.3:-35349016 | MS.gene66860:CDS |
| CAGATATGACTGAGGATGAT+TGG | 0.451467 | 5.3:-35347686 | MS.gene66860:CDS |
| AGAAAAGTTGGTGATGGCAT+TGG | 0.451482 | 5.3:-35348509 | MS.gene66860:CDS |
| GCTCTGTCTGCCAGAAACTT+TGG | 0.451851 | 5.3:-35348447 | MS.gene66860:CDS |
| CGTGTTCGTCCAAACCGATA+AGG | 0.461183 | 5.3:-35349350 | MS.gene66860:CDS |
| CACTTGGTGAATACATCATC+TGG | 0.465148 | 5.3:-35347762 | MS.gene66860:CDS |
| AAGAGGAAATCTATAACCTT+AGG | 0.467358 | 5.3:-35347615 | MS.gene66860:CDS |
| GAGGAGGATGTTGGCAGAGA+GGG | 0.467522 | 5.3:-35348132 | MS.gene66860:CDS |
| TGGTAAAGCTCTTGGACAGC+CGG | 0.473910 | 5.3:-35348861 | MS.gene66860:CDS |
| CTCCTTGTTTGTCCCCAACT+GGG | 0.474424 | 5.3:-35349129 | MS.gene66860:CDS |
| ATGTCAATGATGAGGTCAAT+GGG | 0.475286 | 5.3:-35348712 | MS.gene66860:CDS |
| TTCAGTGATACAGTAATCTC+CGG | 0.475464 | 5.3:+35347843 | None:intergenic |
| TCTGGAGGAAAACTGGATAA+TGG | 0.478713 | 5.3:-35347786 | MS.gene66860:CDS |
| GGTAAAGCTCTTGGACAGCC+GGG | 0.482186 | 5.3:-35348860 | MS.gene66860:CDS |
| GCTGCTCGTTGGCACTCCTA+TGG | 0.482672 | 5.3:+35347739 | None:intergenic |
| TCTGTTCGGGTTGGAGAGAC+GGG | 0.484443 | 5.3:-35348827 | MS.gene66860:CDS |
| GTGTTCGTCCAAACCGATAA+GGG | 0.486721 | 5.3:-35349349 | MS.gene66860:CDS |
| ACAATGTACATACTGTTAAG+AGG | 0.489555 | 5.3:-35349294 | MS.gene66860:CDS |
| TATTGTGAAGGCGATTAAGA+TGG | 0.490069 | 5.3:-35349017 | MS.gene66860:CDS |
| CAAAGCCAGAGGCAACCTGC+TGG | 0.492330 | 5.3:-35349382 | MS.gene66860:CDS |
| GATTTCCTCTTGGCGAATGC+CGG | 0.492812 | 5.3:+35347627 | None:intergenic |
| ATCTGTTCGGGTTGGAGAGA+CGG | 0.492848 | 5.3:-35348828 | MS.gene66860:CDS |
| TTCGCGCCTAATAACCCTAA+AGG | 0.492896 | 5.3:-35348890 | MS.gene66860:CDS |
| GATTAAGATGGGGATCGATC+CGG | 0.496887 | 5.3:-35349005 | MS.gene66860:CDS |
| AAGTGATGAGGAGTCCTCTT+GGG | 0.497100 | 5.3:-35349435 | MS.gene66860:CDS |
| ACTTGAGGTTGTTTGTTTGG+AGG | 0.498223 | 5.3:-35348159 | MS.gene66860:CDS |
| TAATGTGCCTCCTACTGCCT+TGG | 0.500216 | 5.3:-35348759 | MS.gene66860:CDS |
| CTCCATTGCCATCTTTGGAG+TGG | 0.501757 | 5.3:+35348031 | None:intergenic |
| TTTGTTTGGAGGCAAGGAGG+AGG | 0.504289 | 5.3:-35348148 | MS.gene66860:CDS |
| CTCTTGGGAGGGAGTATCAT+GGG | 0.505591 | 5.3:-35349420 | MS.gene66860:CDS |
| GAAGTGATGAGGAGTCCTCT+TGG | 0.506034 | 5.3:-35349436 | MS.gene66860:CDS |
| AGAGGCTTGTCTCAGAGTGC+TGG | 0.512571 | 5.3:-35348291 | MS.gene66860:CDS |
| TTGTTTGTCCCCAACTGGGA+GGG | 0.513060 | 5.3:-35349125 | MS.gene66860:CDS |
| CAAACAACCTCAAGTTCGCT+TGG | 0.513895 | 5.3:+35348167 | None:intergenic |
| CTGGATATCCCTCCCAGTTG+GGG | 0.519889 | 5.3:+35349117 | None:intergenic |
| CCTCTTGGGAGGGAGTATCA+TGG | 0.525248 | 5.3:-35349421 | MS.gene66860:CDS |
| AAACTCCTCGTCAACAAAAG+AGG | 0.525865 | 5.3:+35349172 | None:intergenic |
| ATCAGACTCCACTCCAAAGA+TGG | 0.527707 | 5.3:-35348039 | MS.gene66860:CDS |
| TTAGTTAGAAAAGTTGGTGA+TGG | 0.527730 | 5.3:-35348515 | MS.gene66860:CDS |
| AAATGATGAAGAATCTCCTC+AGG | 0.527882 | 5.3:-35347907 | MS.gene66860:CDS |
| ATCCGGTTCCTGTTAATGGT+GGG | 0.527973 | 5.3:-35348988 | MS.gene66860:CDS |
| TAGGACAGAAGCAGAGGCAG+AGG | 0.528179 | 5.3:-35347596 | MS.gene66860:CDS |
| GCAAGCTCCTCATCAGAAAA+CGG | 0.531273 | 5.3:+35348380 | None:intergenic |
| GAGGATGTTGGCAGAGAGGG+AGG | 0.531799 | 5.3:-35348129 | MS.gene66860:CDS |
| GCCTCCTACTGCCTTGGTGA+AGG | 0.534134 | 5.3:-35348753 | MS.gene66860:CDS |
| TTGGCATGGAATTGGATCGC+GGG | 0.534252 | 5.3:-35349318 | MS.gene66860:CDS |
| TAAGGTTATAGATTTCCTCT+TGG | 0.535338 | 5.3:+35347617 | None:intergenic |
| CTGTCTGCCAGAAACTTTGG+AGG | 0.540526 | 5.3:-35348444 | MS.gene66860:CDS |
| CTCTCATCCAATTTGGAGAG+TGG | 0.540685 | 5.3:+35347951 | None:intergenic |
| CACTCCAAAGATGGCAATGG+AGG | 0.542341 | 5.3:-35348030 | MS.gene66860:CDS |
| GGAGGCAAGGAGGAGGATGT+TGG | 0.542833 | 5.3:-35348141 | MS.gene66860:CDS |
| AGGGTCTAGATCACGAATGT+AGG | 0.542891 | 5.3:+35348358 | None:intergenic |
| AACACGCGTCTCCTCCCAGC+AGG | 0.547617 | 5.3:+35349367 | None:intergenic |
| CAGAAGCAGAGGCAGAGGCT+TGG | 0.547858 | 5.3:-35347591 | MS.gene66860:CDS |
| CCATAAGTTTCATCACATCA+AGG | 0.549621 | 5.3:+35349047 | None:intergenic |
| GAGCATTGAGGAGGAAGAGG+AGG | 0.550253 | 5.3:-35347931 | MS.gene66860:CDS |
| TTGAAACGATCTGTTCGGGT+TGG | 0.551827 | 5.3:-35348836 | MS.gene66860:CDS |
| TGGGAGGGATATCCAGCAAA+GGG | 0.553902 | 5.3:-35349110 | MS.gene66860:CDS |
| TTGTTTGTTTGGAGGCAAGG+AGG | 0.558009 | 5.3:-35348151 | MS.gene66860:CDS |
| AGCTAATTCCTATTGATCAT+GGG | 0.562986 | 5.3:-35348469 | MS.gene66860:CDS |
| GCGAAAGGCTCTTCATCGGT+CGG | 0.567506 | 5.3:+35348908 | None:intergenic |
| GATCCGGTTCCTGTTAATGG+TGG | 0.572205 | 5.3:-35348989 | MS.gene66860:CDS |
| CTTAACACAGATAGACATGC+TGG | 0.572709 | 5.3:-35348545 | MS.gene66860:CDS |
| TGACTGCGAGATGCTTCGAA+TGG | 0.574020 | 5.3:-35348330 | MS.gene66860:CDS |
| TTAGGGTTATTAGGCGCGAA+AGG | 0.575160 | 5.3:+35348893 | None:intergenic |
| CTCCCAGTTGGGGACAAACA+AGG | 0.576176 | 5.3:+35349127 | None:intergenic |
| AAAGCCAGAGGCAACCTGCT+GGG | 0.577393 | 5.3:-35349381 | MS.gene66860:CDS |
| GCTTGCAGGAAGCTGCTCGT+TGG | 0.579262 | 5.3:+35347728 | None:intergenic |
| CTTGTTTGTCCCCAACTGGG+AGG | 0.579667 | 5.3:-35349126 | MS.gene66860:CDS |
| TGAATACATCATCTGGCCAT+AGG | 0.587415 | 5.3:-35347755 | MS.gene66860:CDS |
| TGGCATGGAATTGGATCGCG+GGG | 0.587761 | 5.3:-35349317 | MS.gene66860:CDS |
| AATCATTTCGAACAGCACTA+AGG | 0.588924 | 5.3:+35349197 | None:intergenic |
| TCTCATCCAATTTGGAGAGT+GGG | 0.590594 | 5.3:+35347952 | None:intergenic |
| CTCCACTCCAAAGATGGCAA+TGG | 0.591929 | 5.3:-35348033 | MS.gene66860:CDS |
| ACTATCTCCAAGAACTGAGG+TGG | 0.593399 | 5.3:-35348105 | MS.gene66860:CDS |
| AAAACTGGATAATGGTCACT+TGG | 0.595677 | 5.3:-35347778 | MS.gene66860:CDS |
| CTTGGCATGGAATTGGATCG+CGG | 0.599942 | 5.3:-35349319 | MS.gene66860:CDS |
| TGATGAGGAGTCCTCTTGGG+AGG | 0.600340 | 5.3:-35349432 | MS.gene66860:CDS |
| TGTGATGAAACTTATGGCTA+AGG | 0.600996 | 5.3:-35349041 | MS.gene66860:CDS |
| GTAAAGCTCTTGGACAGCCG+GGG | 0.601192 | 5.3:-35348859 | MS.gene66860:CDS |
| ACCTTCACCAAGGCAGTAGG+AGG | 0.604659 | 5.3:+35348752 | None:intergenic |
| TCGCGAGTTCTACAGGGGTG+AGG | 0.606075 | 5.3:-35348195 | MS.gene66860:CDS |
| TAAGGGTTGTGTGCTTGGCA+TGG | 0.606790 | 5.3:-35349332 | MS.gene66860:CDS |
| TACGATGCACCGAAGCAACC+GGG | 0.606809 | 5.3:+35348591 | None:intergenic |
| TTTCATCACATCAAGGCGTG+TGG | 0.611713 | 5.3:+35349054 | None:intergenic |
| CGAGTTCTACAGGGGTGAGG+AGG | 0.612188 | 5.3:-35348192 | MS.gene66860:CDS |
| GGAGGAGCCAAGCGAACTTG+AGG | 0.613483 | 5.3:-35348174 | MS.gene66860:CDS |
| CAAATTGGATGAGAGCATTG+AGG | 0.615364 | 5.3:-35347943 | MS.gene66860:CDS |
| GGAGGAGGATGTTGGCAGAG+AGG | 0.617952 | 5.3:-35348133 | MS.gene66860:CDS |
| GATGACTCGCGAGTTCTACA+GGG | 0.618979 | 5.3:-35348201 | MS.gene66860:CDS |
| GATCTTCAATGTCAATGATG+AGG | 0.619613 | 5.3:-35348720 | MS.gene66860:CDS |
| CTATCTCCAAGAACTGAGGT+GGG | 0.621633 | 5.3:-35348104 | MS.gene66860:CDS |
| CTGGGAGGGATATCCAGCAA+AGG | 0.625870 | 5.3:-35349111 | MS.gene66860:CDS |
| TAACCTTAGGACAGAAGCAG+AGG | 0.626356 | 5.3:-35347602 | MS.gene66860:CDS |
| AGGCGCGAAAGGCTCTTCAT+CGG | 0.626884 | 5.3:+35348904 | None:intergenic |
| GATGAGGAGTCCTCTTGGGA+GGG | 0.628291 | 5.3:-35349431 | MS.gene66860:CDS |
| AGATGGCAGTTGAAGTGATG+AGG | 0.628913 | 5.3:-35349447 | MS.gene66860:CDS |
| TATGGCTAAGGATATTGTGA+AGG | 0.638957 | 5.3:-35349029 | MS.gene66860:CDS |
| CCATGATACTCCCTCCCAAG+AGG | 0.644125 | 5.3:+35349421 | None:intergenic |
| GAAAACGGAATCGAAGCTTG+AGG | 0.644682 | 5.3:+35348395 | None:intergenic |
| AGAGTCAGAATCAAAGCCAG+AGG | 0.650036 | 5.3:-35349393 | MS.gene66860:CDS |
| GGAGCTGCCAATGATTCGAG+AGG | 0.651572 | 5.3:-35348309 | MS.gene66860:CDS |
| TGTATCCGGCATTCGCCAAG+AGG | 0.652283 | 5.3:-35347632 | MS.gene66860:CDS |
| GTAACCTTCACCAAGGCAGT+AGG | 0.654890 | 5.3:+35348749 | None:intergenic |
| CGAACAGATCGTTTCAACCC+CGG | 0.656066 | 5.3:+35348842 | None:intergenic |
| GAGTCCAGTTCAGACCCAGA+TGG | 0.657322 | 5.3:-35349464 | MS.gene66860:CDS |
| GCATCTCGCAGTCATGAGCA+GGG | 0.668786 | 5.3:+35348339 | None:intergenic |
| GTGGTCCTATTGAAATATTG+GGG | 0.672980 | 5.3:-35349081 | MS.gene66860:CDS |
| ATTGGATGAGAGCATTGAGG+AGG | 0.673893 | 5.3:-35347940 | MS.gene66860:CDS |
| TTGTGAAGGCGATTAAGATG+GGG | 0.677942 | 5.3:-35349015 | MS.gene66860:CDS |
| GCCAGAGGCAACCTGCTGGG+AGG | 0.686395 | 5.3:-35349378 | MS.gene66860:CDS |
| ATGTACATACTGTTAAGAGG+AGG | 0.703896 | 5.3:-35349291 | MS.gene66860:CDS |
| ATCCAGCAAAGGGATAAGAG+TGG | 0.705880 | 5.3:-35349100 | MS.gene66860:CDS |
| GGAACTATCTCCAAGAACTG+AGG | 0.706344 | 5.3:-35348108 | MS.gene66860:CDS |
| CGAGTGAGTAACCTTCACCA+AGG | 0.723759 | 5.3:+35348742 | None:intergenic |
| ATGACTCGCGAGTTCTACAG+GGG | 0.724018 | 5.3:-35348200 | MS.gene66860:CDS |
| AATGCTTGCAGATATGACTG+AGG | 0.771616 | 5.3:-35347694 | MS.gene66860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTAGGGATTGTAAT+GGG | - | chr5.3:35348101-35348120 | MS.gene66860:CDS | 20.0% |
| !!! | TATTATTTTAGGGATTGTAA+TGG | - | chr5.3:35348100-35348119 | MS.gene66860:CDS | 20.0% |
| ! | GTATAGGGATATTAGATATT+AGG | - | chr5.3:35348482-35348501 | MS.gene66860:CDS | 25.0% |
| ! | TGAAAAGTTTCTCTGATTAA+AGG | + | chr5.3:35349051-35349070 | None:intergenic | 25.0% |
| !!! | AACTTGTTAGTTAGAAAAGT+TGG | - | chr5.3:35348532-35348551 | MS.gene66860:CDS | 25.0% |
| !!! | TTATTTTAGGGATTGTAATG+GGG | - | chr5.3:35348102-35348121 | MS.gene66860:CDS | 25.0% |
| AAGAGGAAATCTATAACCTT+AGG | - | chr5.3:35349438-35349457 | MS.gene66860:CDS | 30.0% | |
| ACAATGTACATACTGTTAAG+AGG | - | chr5.3:35347759-35347778 | MS.gene66860:CDS | 30.0% | |
| AGAAAAAGTTGCAACTATTC+CGG | - | chr5.3:35349191-35349210 | MS.gene66860:CDS | 30.0% | |
| AGCTAATTCCTATTGATCAT+GGG | - | chr5.3:35348584-35348603 | MS.gene66860:CDS | 30.0% | |
| AGTGGTCCTATTGAAATATT+GGG | - | chr5.3:35347971-35347990 | MS.gene66860:CDS | 30.0% | |
| CAATGAATCCACTCAAAATA+AGG | + | chr5.3:35348637-35348656 | None:intergenic | 30.0% | |
| CTTTACCAACAAAACCTTTA+GGG | + | chr5.3:35348180-35348199 | None:intergenic | 30.0% | |
| TAAGGTTATAGATTTCCTCT+TGG | + | chr5.3:35349439-35349458 | None:intergenic | 30.0% | |
| ! | TTTGATATTGATTGCGATGA+AGG | - | chr5.3:35348988-35349007 | MS.gene66860:CDS | 30.0% |
| !! | AATAACCCTAAAGGTTTTGT+TGG | - | chr5.3:35348172-35348191 | MS.gene66860:CDS | 30.0% |
| !! | ACAAAACCTTTAGGGTTATT+AGG | + | chr5.3:35348172-35348191 | None:intergenic | 30.0% |
| !! | TTAGTTAGAAAAGTTGGTGA+TGG | - | chr5.3:35348538-35348557 | MS.gene66860:CDS | 30.0% |
| !! | TTCTCTTACTTTTGGTGATA+TGG | - | chr5.3:35347820-35347839 | MS.gene66860:CDS | 30.0% |
| !!! | CTTATTTTGAGTGGATTCAT+TGG | - | chr5.3:35348635-35348654 | MS.gene66860:CDS | 30.0% |
| AAATGATGAAGAATCTCCTC+AGG | - | chr5.3:35349146-35349165 | MS.gene66860:CDS | 35.0% | |
| AATCATTTCGAACAGCACTA+AGG | + | chr5.3:35347859-35347878 | None:intergenic | 35.0% | |
| AATGTCAATGATGAGGTCAA+TGG | - | chr5.3:35348340-35348359 | MS.gene66860:CDS | 35.0% | |
| ATGTACATACTGTTAAGAGG+AGG | - | chr5.3:35347762-35347781 | MS.gene66860:CDS | 35.0% | |
| ATGTCAATGATGAGGTCAAT+GGG | - | chr5.3:35348341-35348360 | MS.gene66860:CDS | 35.0% | |
| ATTGTGAAGGCGATTAAGAT+GGG | - | chr5.3:35348037-35348056 | MS.gene66860:CDS | 35.0% | |
| CCATAAGTTTCATCACATCA+AGG | + | chr5.3:35348009-35348028 | None:intergenic | 35.0% | |
| CCTTGATGTGATGAAACTTA+TGG | - | chr5.3:35348006-35348025 | MS.gene66860:CDS | 35.0% | |
| GAGCTAATTCCTATTGATCA+TGG | - | chr5.3:35348583-35348602 | MS.gene66860:CDS | 35.0% | |
| GAGTGGTCCTATTGAAATAT+TGG | - | chr5.3:35347970-35347989 | MS.gene66860:CDS | 35.0% | |
| GATCTTCAATGTCAATGATG+AGG | - | chr5.3:35348333-35348352 | MS.gene66860:CDS | 35.0% | |
| GATTGCCCCAATATTTCAAT+AGG | + | chr5.3:35347980-35347999 | None:intergenic | 35.0% | |
| GCTTTACCAACAAAACCTTT+AGG | + | chr5.3:35348181-35348200 | None:intergenic | 35.0% | |
| GTGGTCCTATTGAAATATTG+GGG | - | chr5.3:35347972-35347991 | MS.gene66860:CDS | 35.0% | |
| TATGGCTAAGGATATTGTGA+AGG | - | chr5.3:35348024-35348043 | MS.gene66860:CDS | 35.0% | |
| TATTGTGAAGGCGATTAAGA+TGG | - | chr5.3:35348036-35348055 | MS.gene66860:CDS | 35.0% | |
| TGTGATGAAACTTATGGCTA+AGG | - | chr5.3:35348012-35348031 | MS.gene66860:CDS | 35.0% | |
| TTCAGTGATACAGTAATCTC+CGG | + | chr5.3:35349213-35349232 | None:intergenic | 35.0% | |
| ! | AAAACTGGATAATGGTCACT+TGG | - | chr5.3:35349275-35349294 | MS.gene66860:CDS | 35.0% |
| ! | GAAGAGAGTTCTCTTACTTT+TGG | - | chr5.3:35347812-35347831 | MS.gene66860:CDS | 35.0% |
| !! | GATTTTGATGCTAGTGATCA+TGG | - | chr5.3:35348427-35348446 | MS.gene66860:CDS | 35.0% |
| !! | TGGAGGTGCGTATTATTTTA+GGG | - | chr5.3:35348090-35348109 | MS.gene66860:CDS | 35.0% |
| !! | TTGGAGGTGCGTATTATTTT+AGG | - | chr5.3:35348089-35348108 | MS.gene66860:CDS | 35.0% |
| !!! | AGAGTGTTTCTGCTTTTTCT+CGG | + | chr5.3:35349250-35349269 | None:intergenic | 35.0% |
| AAAAAGCAGAAACACTCTGG+AGG | - | chr5.3:35349252-35349271 | MS.gene66860:CDS | 40.0% | |
| AAACTCCTCGTCAACAAAAG+AGG | + | chr5.3:35347884-35347903 | None:intergenic | 40.0% | |
| AATGCTTGCAGATATGACTG+AGG | - | chr5.3:35349359-35349378 | MS.gene66860:CDS | 40.0% | |
| ACTTGAGGTTGTTTGTTTGG+AGG | - | chr5.3:35348894-35348913 | MS.gene66860:CDS | 40.0% | |
| AGGTCAATGGGAATTGTTTC+CGG | - | chr5.3:35348353-35348372 | MS.gene66860:CDS | 40.0% | |
| ATTACGAAGCTTATGCTTGC+AGG | + | chr5.3:35349342-35349361 | None:intergenic | 40.0% | |
| CAGATATGACTGAGGATGAT+TGG | - | chr5.3:35349367-35349386 | MS.gene66860:CDS | 40.0% | |
| CGAACTTGAGGTTGTTTGTT+TGG | - | chr5.3:35348891-35348910 | MS.gene66860:CDS | 40.0% | |
| CTCAATGCTCTCATCCAATT+TGG | + | chr5.3:35349112-35349131 | None:intergenic | 40.0% | |
| CTTAACACAGATAGACATGC+TGG | - | chr5.3:35348508-35348527 | MS.gene66860:CDS | 40.0% | |
| GAAGAATCTCCTCAGGAATT+TGG | - | chr5.3:35349153-35349172 | MS.gene66860:CDS | 40.0% | |
| GAGAAAAAGCAGAAACACTC+TGG | - | chr5.3:35349249-35349268 | MS.gene66860:CDS | 40.0% | |
| GGTCTTTGTCTTGCTGAAAT+TGG | - | chr5.3:35348823-35348842 | MS.gene66860:CDS | 40.0% | |
| GTAAGAGAACTCTCTTCAAC+AGG | + | chr5.3:35347809-35347828 | None:intergenic | 40.0% | |
| GTTTCAAGAGTTGCTGTATC+CGG | - | chr5.3:35349407-35349426 | MS.gene66860:CDS | 40.0% | |
| TAAGGATCCTCCAAAGTTTC+TGG | + | chr5.3:35348619-35348638 | None:intergenic | 40.0% | |
| TCTCATCCAATTTGGAGAGT+GGG | + | chr5.3:35349104-35349123 | None:intergenic | 40.0% | |
| TCTGGAGGAAAACTGGATAA+TGG | - | chr5.3:35349267-35349286 | MS.gene66860:CDS | 40.0% | |
| TGAATACATCATCTGGCCAT+AGG | - | chr5.3:35349298-35349317 | MS.gene66860:CDS | 40.0% | |
| TGCTAACAAGTCTCTTTCTC+CGG | + | chr5.3:35348375-35348394 | None:intergenic | 40.0% | |
| TTCAGCATGCACTTGGAAAT+GGG | - | chr5.3:35349067-35349086 | MS.gene66860:CDS | 40.0% | |
| TTGTGAAGGCGATTAAGATG+GGG | - | chr5.3:35348038-35348057 | MS.gene66860:CDS | 40.0% | |
| TTTCAGCATGCACTTGGAAA+TGG | - | chr5.3:35349066-35349085 | MS.gene66860:CDS | 40.0% | |
| ! | AGCAGCCTCTTTGAGAAAAA+TGG | + | chr5.3:35348797-35348816 | None:intergenic | 40.0% |
| ! | CACTTGGTGAATACATCATC+TGG | - | chr5.3:35349291-35349310 | MS.gene66860:CDS | 40.0% |
| ! | GAAACTTTTCAGCATGCACT+TGG | - | chr5.3:35349060-35349079 | MS.gene66860:CDS | 40.0% |
| ! | TTCGATTCCGTTTTCTGATG+AGG | - | chr5.3:35348666-35348685 | MS.gene66860:CDS | 40.0% |
| !! | AGAAAAGTTGGTGATGGCAT+TGG | - | chr5.3:35348544-35348563 | MS.gene66860:CDS | 40.0% |
| !! | ATGGCATTGGAACTTTTGGT+CGG | - | chr5.3:35348557-35348576 | MS.gene66860:CDS | 40.0% |
| !! | CAAATTGGATGAGAGCATTG+AGG | - | chr5.3:35349110-35349129 | MS.gene66860:CDS | 40.0% |
| !! | CTGCACCATTTTTCTCAAAG+AGG | - | chr5.3:35348789-35348808 | MS.gene66860:CDS | 40.0% |
| !! | GAAAAAGCACCAAATTCCTG+AGG | + | chr5.3:35349165-35349184 | None:intergenic | 40.0% |
| !!! | GGTTTTGTTGGTAAAGCTCT+TGG | - | chr5.3:35348184-35348203 | MS.gene66860:CDS | 40.0% |
| !!! | TGGAGGATCCTTATTTTGAG+TGG | - | chr5.3:35348626-35348645 | MS.gene66860:CDS | 40.0% |
| AAGTGATGAGGAGTCCTCTT+GGG | - | chr5.3:35347618-35347637 | MS.gene66860:CDS | 45.0% | |
| ACTATCTCCAAGAACTGAGG+TGG | - | chr5.3:35348948-35348967 | MS.gene66860:CDS | 45.0% | |
| AGACAAGCCTCTCGAATCAT+TGG | + | chr5.3:35348754-35348773 | None:intergenic | 45.0% | |
| AGACAGAGCCCATGATCAAT+AGG | + | chr5.3:35348595-35348614 | None:intergenic | 45.0% | |
| AGAGTCAGAATCAAAGCCAG+AGG | - | chr5.3:35347660-35347679 | MS.gene66860:CDS | 45.0% | |
| AGATGGCAGTTGAAGTGATG+AGG | - | chr5.3:35347606-35347625 | MS.gene66860:CDS | 45.0% | |
| AGGGTCTAGATCACGAATGT+AGG | + | chr5.3:35348698-35348717 | None:intergenic | 45.0% | |
| AGGTTGTTTGTTTGGAGGCA+AGG | - | chr5.3:35348899-35348918 | MS.gene66860:CDS | 45.0% | |
| ATCAGACTCCACTCCAAAGA+TGG | - | chr5.3:35349014-35349033 | MS.gene66860:CDS | 45.0% | |
| ATCCAGCAAAGGGATAAGAG+TGG | - | chr5.3:35347953-35347972 | MS.gene66860:CDS | 45.0% | |
| ATCCGGTTCCTGTTAATGGT+GGG | - | chr5.3:35348065-35348084 | MS.gene66860:CDS | 45.0% | |
| ATCGATCCGGTTCCTGTTAA+TGG | - | chr5.3:35348061-35348080 | MS.gene66860:CDS | 45.0% | |
| CAAACAACCTCAAGTTCGCT+TGG | + | chr5.3:35348889-35348908 | None:intergenic | 45.0% | |
| CATCACTTCAACTGCCATCT+GGG | + | chr5.3:35347606-35347625 | None:intergenic | 45.0% | |
| CTATCTCCAAGAACTGAGGT+GGG | - | chr5.3:35348949-35348968 | MS.gene66860:CDS | 45.0% | |
| CTCAAAGAGGCTGCTGAATT+TGG | - | chr5.3:35348802-35348821 | MS.gene66860:CDS | 45.0% | |
| CTCTCATCCAATTTGGAGAG+TGG | + | chr5.3:35349105-35349124 | None:intergenic | 45.0% | |
| GAAAACGGAATCGAAGCTTG+AGG | + | chr5.3:35348661-35348680 | None:intergenic | 45.0% | |
| GATTAAGATGGGGATCGATC+CGG | - | chr5.3:35348048-35348067 | MS.gene66860:CDS | 45.0% | |
| GCAAGCTCCTCATCAGAAAA+CGG | + | chr5.3:35348676-35348695 | None:intergenic | 45.0% | |
| GGAACTATCTCCAAGAACTG+AGG | - | chr5.3:35348945-35348964 | MS.gene66860:CDS | 45.0% | |
| GTGTTCGTCCAAACCGATAA+GGG | - | chr5.3:35347704-35347723 | MS.gene66860:CDS | 45.0% | |
| TAACCTTAGGACAGAAGCAG+AGG | - | chr5.3:35349451-35349470 | MS.gene66860:CDS | 45.0% | |
| TCATCACTTCAACTGCCATC+TGG | + | chr5.3:35347607-35347626 | None:intergenic | 45.0% | |
| TTAGGGTTATTAGGCGCGAA+AGG | + | chr5.3:35348163-35348182 | None:intergenic | 45.0% | |
| TTCGCGCCTAATAACCCTAA+AGG | - | chr5.3:35348163-35348182 | MS.gene66860:CDS | 45.0% | |
| TTGAAACGATCTGTTCGGGT+TGG | - | chr5.3:35348217-35348236 | MS.gene66860:CDS | 45.0% | |
| TTGTGTGCTTGGCATGGAAT+TGG | - | chr5.3:35347727-35347746 | MS.gene66860:CDS | 45.0% | |
| TTGTTTGTTTGGAGGCAAGG+AGG | - | chr5.3:35348902-35348921 | MS.gene66860:CDS | 45.0% | |
| TTTCATCACATCAAGGCGTG+TGG | + | chr5.3:35348002-35348021 | None:intergenic | 45.0% | |
| ! | ATTCGCCTCTTTTGTTGACG+AGG | - | chr5.3:35347876-35347895 | MS.gene66860:CDS | 45.0% |
| ! | GAAACACTCTGGAGGAAAAC+TGG | - | chr5.3:35349260-35349279 | MS.gene66860:CDS | 45.0% |
| ! | TTGCTTCGGTGCATCGTATA+GGG | - | chr5.3:35348467-35348486 | MS.gene66860:CDS | 45.0% |
| !! | ATTGGATGAGAGCATTGAGG+AGG | - | chr5.3:35349113-35349132 | MS.gene66860:CDS | 45.0% |
| !! | GGTGATGGCATTGGAACTTT+TGG | - | chr5.3:35348553-35348572 | MS.gene66860:CDS | 45.0% |
| !! | TGGCATTGGAACTTTTGGTC+GGG | - | chr5.3:35348558-35348577 | MS.gene66860:CDS | 45.0% |
| !!! | CTGCTTTTTCTCGGCTAACA+TGG | + | chr5.3:35349241-35349260 | None:intergenic | 45.0% |
| ACCGATAAGGGTTGTGTGCT+TGG | - | chr5.3:35347716-35347735 | MS.gene66860:CDS | 50.0% | |
| AGCCCACCATTAACAGGAAC+CGG | + | chr5.3:35348070-35348089 | None:intergenic | 50.0% | |
| ATACGATGCACCGAAGCAAC+CGG | + | chr5.3:35348466-35348485 | None:intergenic | 50.0% | |
| ATGACTCGCGAGTTCTACAG+GGG | - | chr5.3:35348853-35348872 | MS.gene66860:CDS | 50.0% | |
| CACTCCAAAGATGGCAATGG+AGG | - | chr5.3:35349023-35349042 | MS.gene66860:CDS | 50.0% | |
| CGAACAGATCGTTTCAACCC+CGG | + | chr5.3:35348214-35348233 | None:intergenic | 50.0% | |
| CGAGTGAGTAACCTTCACCA+AGG | + | chr5.3:35348314-35348333 | None:intergenic | 50.0% | |
| CGGGGTTGAAACGATCTGTT+CGG | - | chr5.3:35348212-35348231 | MS.gene66860:CDS | 50.0% | |
| CGTGTTCGTCCAAACCGATA+AGG | - | chr5.3:35347703-35347722 | MS.gene66860:CDS | 50.0% | |
| CTCCACTCCAAAGATGGCAA+TGG | - | chr5.3:35349020-35349039 | MS.gene66860:CDS | 50.0% | |
| CTGTCTGCCAGAAACTTTGG+AGG | - | chr5.3:35348609-35348628 | MS.gene66860:CDS | 50.0% | |
| CTTGGCATGGAATTGGATCG+CGG | - | chr5.3:35347734-35347753 | MS.gene66860:CDS | 50.0% | |
| GAAGTGATGAGGAGTCCTCT+TGG | - | chr5.3:35347617-35347636 | MS.gene66860:CDS | 50.0% | |
| GACCACTCTTATCCCTTTGC+TGG | + | chr5.3:35347958-35347977 | None:intergenic | 50.0% | |
| GATCCGGTTCCTGTTAATGG+TGG | - | chr5.3:35348064-35348083 | MS.gene66860:CDS | 50.0% | |
| GATGACTCGCGAGTTCTACA+GGG | - | chr5.3:35348852-35348871 | MS.gene66860:CDS | 50.0% | |
| GATTTCCTCTTGGCGAATGC+CGG | + | chr5.3:35349429-35349448 | None:intergenic | 50.0% | |
| GCCAAGCACACAACCCTTAT+CGG | + | chr5.3:35347720-35347739 | None:intergenic | 50.0% | |
| GCTCTGTCTGCCAGAAACTT+TGG | - | chr5.3:35348606-35348625 | MS.gene66860:CDS | 50.0% | |
| GGATCCTCCATTGCCATCTT+TGG | + | chr5.3:35349030-35349049 | None:intergenic | 50.0% | |
| GGGGTTGAAACGATCTGTTC+GGG | - | chr5.3:35348213-35348232 | MS.gene66860:CDS | 50.0% | |
| GTAACCTTCACCAAGGCAGT+AGG | + | chr5.3:35348307-35348326 | None:intergenic | 50.0% | |
| TAAGGGTTGTGTGCTTGGCA+TGG | - | chr5.3:35347721-35347740 | MS.gene66860:CDS | 50.0% | |
| TAATGTGCCTCCTACTGCCT+TGG | - | chr5.3:35348294-35348313 | MS.gene66860:CDS | 50.0% | |
| TGACTGCGAGATGCTTCGAA+TGG | - | chr5.3:35348723-35348742 | MS.gene66860:CDS | 50.0% | |
| TGATGACTCGCGAGTTCTAC+AGG | - | chr5.3:35348851-35348870 | MS.gene66860:CDS | 50.0% | |
| TGGGAGGGATATCCAGCAAA+GGG | - | chr5.3:35347943-35347962 | MS.gene66860:CDS | 50.0% | |
| TGGTAAAGCTCTTGGACAGC+CGG | - | chr5.3:35348192-35348211 | MS.gene66860:CDS | 50.0% | |
| TTGGCATGGAATTGGATCGC+GGG | - | chr5.3:35347735-35347754 | MS.gene66860:CDS | 50.0% | |
| TTGTTTGTCCCCAACTGGGA+GGG | - | chr5.3:35347928-35347947 | MS.gene66860:CDS | 50.0% | |
| TTTGTTTGGAGGCAAGGAGG+AGG | - | chr5.3:35348905-35348924 | MS.gene66860:CDS | 50.0% | |
| ! | ACTCCTTGTTTGTCCCCAAC+TGG | - | chr5.3:35347923-35347942 | MS.gene66860:CDS | 50.0% |
| ! | CATTGGAACTTTTGGTCGGG+TGG | - | chr5.3:35348561-35348580 | MS.gene66860:CDS | 50.0% |
| ! | CTCCATTGCCATCTTTGGAG+TGG | + | chr5.3:35349025-35349044 | None:intergenic | 50.0% |
| ! | CTCCTTGTTTGTCCCCAACT+GGG | - | chr5.3:35347924-35347943 | MS.gene66860:CDS | 50.0% |
| ! | GCACACAACCCTTATCGGTT+TGG | + | chr5.3:35347715-35347734 | None:intergenic | 50.0% |
| ! | GTTGCTTCGGTGCATCGTAT+AGG | - | chr5.3:35348466-35348485 | MS.gene66860:CDS | 50.0% |
| !! | ATCTGTTCGGGTTGGAGAGA+CGG | - | chr5.3:35348225-35348244 | MS.gene66860:CDS | 50.0% |
| !! | CTCTTGGGAGGGAGTATCAT+GGG | - | chr5.3:35347633-35347652 | MS.gene66860:CDS | 50.0% |
| !! | GGTTGGAGAGACGGGTTTTA+GGG | - | chr5.3:35348234-35348253 | MS.gene66860:CDS | 50.0% |
| !! | GTTCCTGTTAATGGTGGGCT+TGG | - | chr5.3:35348070-35348089 | MS.gene66860:CDS | 50.0% |
| !! | TGAGAGCATTGAGGAGGAAG+AGG | - | chr5.3:35349119-35349138 | MS.gene66860:CDS | 50.0% |
| AAAGCCAGAGGCAACCTGCT+GGG | - | chr5.3:35347672-35347691 | MS.gene66860:CDS | 55.0% | |
| ACCTTCACCAAGGCAGTAGG+AGG | + | chr5.3:35348304-35348323 | None:intergenic | 55.0% | |
| ACTGCCATCTGGGTCTGAAC+TGG | + | chr5.3:35347596-35347615 | None:intergenic | 55.0% | |
| AGAGGCTTGTCTCAGAGTGC+TGG | - | chr5.3:35348762-35348781 | MS.gene66860:CDS | 55.0% | |
| AGCATCTCGCAGTCATGAGC+AGG | + | chr5.3:35348718-35348737 | None:intergenic | 55.0% | |
| AGGCGCGAAAGGCTCTTCAT+CGG | + | chr5.3:35348152-35348171 | None:intergenic | 55.0% | |
| CCATGATACTCCCTCCCAAG+AGG | + | chr5.3:35347635-35347654 | None:intergenic | 55.0% | |
| CCTCCAAGCCCACCATTAAC+AGG | + | chr5.3:35348076-35348095 | None:intergenic | 55.0% | |
| CTCCCAGTTGGGGACAAACA+AGG | + | chr5.3:35347929-35347948 | None:intergenic | 55.0% | |
| CTGCCTCTGCTTCTGTCCTA+AGG | + | chr5.3:35349457-35349476 | None:intergenic | 55.0% | |
| CTGGATATCCCTCCCAGTTG+GGG | + | chr5.3:35347939-35347958 | None:intergenic | 55.0% | |
| CTGGGAGGGATATCCAGCAA+AGG | - | chr5.3:35347942-35347961 | MS.gene66860:CDS | 55.0% | |
| CTTGTTTGTCCCCAACTGGG+AGG | - | chr5.3:35347927-35347946 | MS.gene66860:CDS | 55.0% | |
| GAGGAGGATGTTGGCAGAGA+GGG | - | chr5.3:35348921-35348940 | MS.gene66860:CDS | 55.0% | |
| GAGTCCAGTTCAGACCCAGA+TGG | - | chr5.3:35347589-35347608 | MS.gene66860:CDS | 55.0% | |
| GATGAGGAGTCCTCTTGGGA+GGG | - | chr5.3:35347622-35347641 | MS.gene66860:CDS | 55.0% | |
| GCATCTCGCAGTCATGAGCA+GGG | + | chr5.3:35348717-35348736 | None:intergenic | 55.0% | |
| GCGAAAGGCTCTTCATCGGT+CGG | + | chr5.3:35348148-35348167 | None:intergenic | 55.0% | |
| GCGTAGCCCACTCTCCAAAT+TGG | - | chr5.3:35349095-35349114 | MS.gene66860:CDS | 55.0% | |
| GCTGGATATCCCTCCCAGTT+GGG | + | chr5.3:35347940-35347959 | None:intergenic | 55.0% | |
| GGAGCTGCCAATGATTCGAG+AGG | - | chr5.3:35348744-35348763 | MS.gene66860:CDS | 55.0% | |
| GGAGGTTGCGGCTTATCTTC+TGG | - | chr5.3:35348255-35348274 | MS.gene66860:CDS | 55.0% | |
| GGTAAAGCTCTTGGACAGCC+GGG | - | chr5.3:35348193-35348212 | MS.gene66860:CDS | 55.0% | |
| GTAAAGCTCTTGGACAGCCG+GGG | - | chr5.3:35348194-35348213 | MS.gene66860:CDS | 55.0% | |
| TACGATGCACCGAAGCAACC+GGG | + | chr5.3:35348465-35348484 | None:intergenic | 55.0% | |
| TAGGACAGAAGCAGAGGCAG+AGG | - | chr5.3:35349457-35349476 | MS.gene66860:CDS | 55.0% | |
| TCATGGTACGTCGAGCTTCC+CGG | - | chr5.3:35348444-35348463 | MS.gene66860:CDS | 55.0% | |
| TCGTCTCCCACCTCAGTTCT+TGG | + | chr5.3:35348958-35348977 | None:intergenic | 55.0% | |
| TGATGAGGAGTCCTCTTGGG+AGG | - | chr5.3:35347621-35347640 | MS.gene66860:CDS | 55.0% | |
| TGCTGGATATCCCTCCCAGT+TGG | + | chr5.3:35347941-35347960 | None:intergenic | 55.0% | |
| TGGCATGGAATTGGATCGCG+GGG | - | chr5.3:35347736-35347755 | MS.gene66860:CDS | 55.0% | |
| TGTATCCGGCATTCGCCAAG+AGG | - | chr5.3:35349421-35349440 | MS.gene66860:CDS | 55.0% | |
| !! | CCTCTTGGGAGGGAGTATCA+TGG | - | chr5.3:35347632-35347651 | MS.gene66860:CDS | 55.0% |
| !! | CCTGTTAATGGTGGGCTTGG+AGG | - | chr5.3:35348073-35348092 | MS.gene66860:CDS | 55.0% |
| !! | GAGCATTGAGGAGGAAGAGG+AGG | - | chr5.3:35349122-35349141 | MS.gene66860:CDS | 55.0% |
| !! | GGGTTGGAGAGACGGGTTTT+AGG | - | chr5.3:35348233-35348252 | MS.gene66860:CDS | 55.0% |
| !! | TCTGTTCGGGTTGGAGAGAC+GGG | - | chr5.3:35348226-35348245 | MS.gene66860:CDS | 55.0% |
| !!! | GACGGGTTTTAGGGAGGTTG+CGG | - | chr5.3:35348243-35348262 | MS.gene66860:CDS | 55.0% |
| !!! | TGGAGAGACGGGTTTTAGGG+AGG | - | chr5.3:35348237-35348256 | MS.gene66860:CDS | 55.0% |
| CAAAGCCAGAGGCAACCTGC+TGG | - | chr5.3:35347671-35347690 | MS.gene66860:CDS | 60.0% | |
| CAGAAGCAGAGGCAGAGGCT+TGG | - | chr5.3:35349462-35349481 | MS.gene66860:CDS | 60.0% | |
| CGAGTTCTACAGGGGTGAGG+AGG | - | chr5.3:35348861-35348880 | MS.gene66860:CDS | 60.0% | |
| GAGGATGTTGGCAGAGAGGG+AGG | - | chr5.3:35348924-35348943 | MS.gene66860:CDS | 60.0% | |
| GCCTCCTACTGCCTTGGTGA+AGG | - | chr5.3:35348300-35348319 | MS.gene66860:CDS | 60.0% | |
| GCTGCTCGTTGGCACTCCTA+TGG | + | chr5.3:35349317-35349336 | None:intergenic | 60.0% | |
| GCTTGCAGGAAGCTGCTCGT+TGG | + | chr5.3:35349328-35349347 | None:intergenic | 60.0% | |
| GGAGGAGCCAAGCGAACTTG+AGG | - | chr5.3:35348879-35348898 | MS.gene66860:CDS | 60.0% | |
| GGAGGAGGATGTTGGCAGAG+AGG | - | chr5.3:35348920-35348939 | MS.gene66860:CDS | 60.0% | |
| GGAGGCAAGGAGGAGGATGT+TGG | - | chr5.3:35348912-35348931 | MS.gene66860:CDS | 60.0% | |
| GTCGAGCTTCCCGGTTGCTT+CGG | - | chr5.3:35348453-35348472 | MS.gene66860:CDS | 60.0% | |
| TCGCGAGTTCTACAGGGGTG+AGG | - | chr5.3:35348858-35348877 | MS.gene66860:CDS | 60.0% | |
| AACACGCGTCTCCTCCCAGC+AGG | + | chr5.3:35347689-35347708 | None:intergenic | 65.0% | |
| TCCTCCCAGCAGGTTGCCTC+TGG | + | chr5.3:35347679-35347698 | None:intergenic | 65.0% | |
| GCCAGAGGCAACCTGCTGGG+AGG | - | chr5.3:35347675-35347694 | MS.gene66860:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 35347572 | 35349503 | 35347572 | ID=MS.gene66860 |
| chr5.3 | mRNA | 35347572 | 35349503 | 35347572 | ID=MS.gene66860.t1;Parent=MS.gene66860 |
| chr5.3 | exon | 35347572 | 35349503 | 35347572 | ID=MS.gene66860.t1.exon1;Parent=MS.gene66860.t1 |
| chr5.3 | CDS | 35347572 | 35349503 | 35347572 | ID=cds.MS.gene66860.t1;Parent=MS.gene66860.t1 |
| Gene Sequence |
| Protein sequence |
