Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67110.t1 | KEH40041.1 | 93 | 383 | 20 | 2 | 1 | 382 | 1 | 377 | 1.50E-202 | 715.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67110.t1 | Q9FMN2 | 80.2 | 248 | 48 | 1 | 133 | 380 | 679 | 925 | 7.5e-118 | 425.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67110.t1 | G7I3N3 | 93.0 | 383 | 20 | 2 | 1 | 382 | 141 | 517 | 1.1e-202 | 715.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050105 | MS.gene67110 | 0.822105 | 2.83E-53 | -1.69E-46 |
| MS.gene051122 | MS.gene67110 | 0.804555 | 2.04E-49 | -1.69E-46 |
| MS.gene051935 | MS.gene67110 | 0.812524 | 4.06E-51 | -1.69E-46 |
| MS.gene052586 | MS.gene67110 | 0.801291 | 9.65E-49 | -1.69E-46 |
| MS.gene052677 | MS.gene67110 | 0.800128 | 1.67E-48 | -1.69E-46 |
| MS.gene054468 | MS.gene67110 | 0.812016 | 5.24E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene67110 | 0.845471 | 3.98E-59 | -1.69E-46 |
| MS.gene055701 | MS.gene67110 | 0.833483 | 5.20E-56 | -1.69E-46 |
| MS.gene056480 | MS.gene67110 | 0.80071 | 1.27E-48 | -1.69E-46 |
| MS.gene057026 | MS.gene67110 | 0.829442 | 5.14E-55 | -1.69E-46 |
| MS.gene057156 | MS.gene67110 | -0.810008 | 1.43E-50 | -1.69E-46 |
| MS.gene058081 | MS.gene67110 | 0.838682 | 2.49E-57 | -1.69E-46 |
| MS.gene059439 | MS.gene67110 | 0.817215 | 3.70E-52 | -1.69E-46 |
| MS.gene059952 | MS.gene67110 | 0.818257 | 2.15E-52 | -1.69E-46 |
| MS.gene060373 | MS.gene67110 | 0.801909 | 7.21E-49 | -1.69E-46 |
| MS.gene060851 | MS.gene67110 | 0.807902 | 4.03E-50 | -1.69E-46 |
| MS.gene060852 | MS.gene67110 | 0.805687 | 1.18E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67110.t1 | MTR_1g019740 | 92.950 | 383 | 20 | 2 | 1 | 382 | 1 | 377 | 0.0 | 724 |
| MS.gene67110.t1 | MTR_1g019740 | 92.950 | 383 | 20 | 2 | 1 | 382 | 141 | 517 | 0.0 | 723 |
| MS.gene67110.t1 | MTR_3g101590 | 82.258 | 248 | 43 | 1 | 133 | 380 | 581 | 827 | 5.55e-147 | 437 |
| MS.gene67110.t1 | MTR_7g100370 | 73.438 | 256 | 66 | 2 | 126 | 380 | 608 | 862 | 7.05e-134 | 404 |
| MS.gene67110.t1 | MTR_1g067380 | 74.590 | 244 | 61 | 1 | 137 | 380 | 678 | 920 | 3.59e-133 | 404 |
| MS.gene67110.t1 | MTR_3g101590 | 82.390 | 159 | 28 | 0 | 133 | 291 | 581 | 739 | 3.46e-89 | 285 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67110.t1 | AT5G42870 | 80.242 | 248 | 48 | 1 | 133 | 380 | 679 | 925 | 1.00e-143 | 431 |
| MS.gene67110.t1 | AT5G42870 | 79.435 | 248 | 45 | 2 | 133 | 380 | 679 | 920 | 1.42e-139 | 420 |
| MS.gene67110.t1 | AT3G09560 | 74.390 | 246 | 63 | 0 | 135 | 380 | 654 | 899 | 1.27e-131 | 399 |
| MS.gene67110.t1 | AT3G09560 | 74.390 | 246 | 63 | 0 | 135 | 380 | 654 | 899 | 1.27e-131 | 399 |
| MS.gene67110.t1 | AT3G09560 | 74.390 | 246 | 63 | 0 | 135 | 380 | 654 | 899 | 1.27e-131 | 399 |
| MS.gene67110.t1 | AT3G09560 | 74.390 | 246 | 63 | 0 | 135 | 380 | 654 | 899 | 1.27e-131 | 399 |
| MS.gene67110.t1 | AT5G42870 | 80.976 | 205 | 39 | 0 | 133 | 337 | 679 | 883 | 1.20e-116 | 360 |
Find 89 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCCAAGTTGTTGGATTTA+AGG | 0.119943 | 1.3:+3889276 | MS.gene67110:CDS |
| ATTTCAATTCCTGGAATTTC+TGG | 0.157366 | 1.3:+3893871 | MS.gene67110:CDS |
| TTTCCAAAACCAGCATAAAA+AGG | 0.268711 | 1.3:-3893431 | None:intergenic |
| ATTCAAAATTGCATGTTTAG+AGG | 0.306466 | 1.3:+3893288 | MS.gene67110:CDS |
| AGAATAAATAGATTTGTATT+GGG | 0.316446 | 1.3:+3889206 | MS.gene67110:CDS |
| TGCAGGAGGATTTCAATTCC+TGG | 0.325571 | 1.3:+3893862 | MS.gene67110:intron |
| TCTCCCTTCCTTCAGATTCA+AGG | 0.332182 | 1.3:-3889747 | None:intergenic |
| TTCCACACATCACAGGAAAA+TGG | 0.342813 | 1.3:+3892865 | MS.gene67110:intron |
| GAGAATAAATAGATTTGTAT+TGG | 0.343977 | 1.3:+3889205 | MS.gene67110:CDS |
| CTTTAGCGATTCCAACCTTA+AGG | 0.348082 | 1.3:-3893478 | None:intergenic |
| CGATGAAATCAGTTACCTTA+AGG | 0.392578 | 1.3:+3893463 | MS.gene67110:CDS |
| CTGTTTCTCTACACCTATGA+TGG | 0.393409 | 1.3:+3889784 | MS.gene67110:CDS |
| ATTTATGTATCACCTGGTTA+AGG | 0.395576 | 1.3:-3892957 | None:intergenic |
| GTCAATTCATGCCTTTAGTT+GGG | 0.399122 | 1.3:+3892471 | MS.gene67110:CDS |
| TTTAATGCTTCCAGGACATC+AGG | 0.400587 | 1.3:+3893384 | MS.gene67110:intron |
| GAGAAAGTCAAGTTTGAATC+TGG | 0.403816 | 1.3:+3889374 | MS.gene67110:CDS |
| GGTCAATTCATGCCTTTAGT+TGG | 0.412243 | 1.3:+3892470 | MS.gene67110:CDS |
| TCACCTGGTTAAGGTTGAAT+AGG | 0.421278 | 1.3:-3892948 | None:intergenic |
| CTTAAGGTTGGAATCGCTAA+AGG | 0.424789 | 1.3:+3893479 | MS.gene67110:CDS |
| TGCCTTTAGTTGGGATTGAC+TGG | 0.425638 | 1.3:+3892480 | MS.gene67110:CDS |
| AAATTACCACAATCCTTTAC+CGG | 0.427602 | 1.3:-3889602 | None:intergenic |
| GAAAACTCAGGGTGTTAACT+TGG | 0.435480 | 1.3:+3889346 | MS.gene67110:CDS |
| CAGTGCTCGTGCAATTTCTC+AGG | 0.436002 | 1.3:+3892906 | MS.gene67110:CDS |
| CGCTGAATCTGCATCACCAC+TGG | 0.436104 | 1.3:-3889237 | None:intergenic |
| ACCTGCCGCATCCCCATCAT+AGG | 0.445358 | 1.3:-3889797 | None:intergenic |
| CCCTATAATTTATTAGAAAG+AGG | 0.449741 | 1.3:-3893901 | None:intergenic |
| GGGCAACTTCCAGAAATTCC+AGG | 0.456984 | 1.3:-3893880 | None:intergenic |
| AAGGTTGAATAGGAATTGTC+TGG | 0.463826 | 1.3:-3892938 | None:intergenic |
| AAGGGATTGTTCTGTTAAGA+AGG | 0.468316 | 1.3:+3889688 | MS.gene67110:CDS |
| GAAATTACAACAGGACCATC+TGG | 0.470676 | 1.3:-3893084 | None:intergenic |
| TGTTTCTCTACACCTATGAT+GGG | 0.472114 | 1.3:+3889785 | MS.gene67110:CDS |
| GATGACAGTTGTTCAGAAGT+TGG | 0.475026 | 1.3:-3889725 | None:intergenic |
| ACCTATGATGGGGATGCGGC+AGG | 0.483533 | 1.3:+3889796 | MS.gene67110:CDS |
| GAAATCAGTTACCTTAAGGT+TGG | 0.483544 | 1.3:+3893467 | MS.gene67110:CDS |
| TTATAGCTATGAATGATTCT+CGG | 0.488537 | 1.3:+3889177 | None:intergenic |
| TGAGGTTGCAGCCAAGTTGT+TGG | 0.490682 | 1.3:+3889268 | MS.gene67110:CDS |
| AAAATTGAGGGAGTGATTAA+GGG | 0.490787 | 1.3:+3889563 | MS.gene67110:CDS |
| TGTTGCAGGTCAGACGTTCT+AGG | 0.500038 | 1.3:+3892449 | MS.gene67110:intron |
| CCTGCTCAGATGAGTCTGTA+GGG | 0.506484 | 1.3:-3893709 | None:intergenic |
| CCGTCAGGGGAAATTACAAC+AGG | 0.506661 | 1.3:-3893093 | None:intergenic |
| CCTATAATTTATTAGAAAGA+GGG | 0.509739 | 1.3:-3893900 | None:intergenic |
| CCCTACAGACTCATCTGAGC+AGG | 0.511436 | 1.3:+3893709 | MS.gene67110:CDS |
| ATAGATTTGTATTGGGGCCA+AGG | 0.525870 | 1.3:+3889213 | MS.gene67110:CDS |
| GGGTGTTGATCTAGAGATAC+CGG | 0.530252 | 1.3:+3889583 | MS.gene67110:CDS |
| TTTCCTTCTCTATATAGAGA+AGG | 0.536561 | 1.3:+3893120 | MS.gene67110:CDS |
| AATATTTATAATTAATCCCA+AGG | 0.543298 | 1.3:+3893505 | MS.gene67110:CDS |
| TCATCCTTGAATCTGAAGGA+AGG | 0.548459 | 1.3:+3889743 | MS.gene67110:CDS |
| CCACCTTAAATCCAACAACT+TGG | 0.553602 | 1.3:-3889279 | None:intergenic |
| TAGGAATTGTCTGGTGTGAT+GGG | 0.553963 | 1.3:-3892929 | None:intergenic |
| AGTCAAGTTTGAATCTGGCA+AGG | 0.554206 | 1.3:+3889379 | MS.gene67110:CDS |
| ATAGGAATTGTCTGGTGTGA+TGG | 0.555255 | 1.3:-3892930 | None:intergenic |
| TCTCTTCATGCTCTCGTGAA+CGG | 0.555622 | 1.3:+3893677 | MS.gene67110:CDS |
| AACTGTCAACATTGGTCGAA+GGG | 0.556516 | 1.3:+3889670 | MS.gene67110:CDS |
| GACCAGTCAATCCCAACTAA+AGG | 0.557857 | 1.3:-3892482 | None:intergenic |
| TCTGCATCACCACTGGACCT+TGG | 0.559022 | 1.3:-3889230 | None:intergenic |
| GGGATTGACTGGTCACAGAC+AGG | 0.560023 | 1.3:+3892491 | MS.gene67110:CDS |
| CCAAGTTGTTGGATTTAAGG+TGG | 0.571926 | 1.3:+3889279 | MS.gene67110:CDS |
| CATCCTTGAATCTGAAGGAA+GGG | 0.573317 | 1.3:+3889744 | MS.gene67110:CDS |
| ACTGTCATCCTTGAATCTGA+AGG | 0.578321 | 1.3:+3889739 | MS.gene67110:CDS |
| CTTAAGGTAACTGATTTCAT+CGG | 0.580341 | 1.3:-3893462 | None:intergenic |
| GAATAAATAGATTTGTATTG+GGG | 0.580790 | 1.3:+3889207 | MS.gene67110:CDS |
| TGATCTAGAGATACCGGTAA+AGG | 0.585910 | 1.3:+3889589 | MS.gene67110:CDS |
| CTACACCTATGATGGGGATG+CGG | 0.587747 | 1.3:+3889792 | MS.gene67110:CDS |
| TAGTGATATCAGATGTGGAT+GGG | 0.588202 | 1.3:+3890783 | MS.gene67110:CDS |
| GAGATACCGGTAAAGGATTG+TGG | 0.589687 | 1.3:+3889596 | MS.gene67110:CDS |
| ATACCTTCTCTATATAGAGA+AGG | 0.590890 | 1.3:-3893123 | None:intergenic |
| CCTGTTGTAATTTCCCCTGA+CGG | 0.592235 | 1.3:+3893093 | MS.gene67110:CDS |
| ACCTGCTCAGATGAGTCTGT+AGG | 0.608192 | 1.3:-3893710 | None:intergenic |
| GTTTCTCTACACCTATGATG+GGG | 0.608738 | 1.3:+3889786 | MS.gene67110:CDS |
| AAATCTCGAACTGTCAACAT+TGG | 0.612310 | 1.3:+3889662 | MS.gene67110:CDS |
| TACGGAAAGAAAGAAAACTC+AGG | 0.613250 | 1.3:+3889334 | MS.gene67110:CDS |
| TGCTCAGATGAGTCTGTAGG+GGG | 0.614155 | 1.3:-3893707 | None:intergenic |
| GAACTGTCAACATTGGTCGA+AGG | 0.615065 | 1.3:+3889669 | MS.gene67110:CDS |
| ATAGTGATATCAGATGTGGA+TGG | 0.615545 | 1.3:+3890782 | MS.gene67110:CDS |
| TCGTATAGTGATATCAGATG+TGG | 0.622752 | 1.3:+3890778 | MS.gene67110:CDS |
| ATGTGGATGGGACTATTACA+AGG | 0.630686 | 1.3:+3890795 | MS.gene67110:CDS |
| TTAATGCTTCCAGGACATCA+GGG | 0.632684 | 1.3:+3893385 | MS.gene67110:intron |
| GTATTGGGGCCAAGGTCCAG+TGG | 0.634869 | 1.3:+3889221 | MS.gene67110:CDS |
| ACGGAAAGAAAGAAAACTCA+GGG | 0.637372 | 1.3:+3889335 | MS.gene67110:CDS |
| ATTCCTATTCAACCTTAACC+AGG | 0.638969 | 1.3:+3892945 | MS.gene67110:CDS |
| GATGGGAAAGTCTTACCAGA+TGG | 0.640538 | 1.3:+3893069 | MS.gene67110:CDS |
| AGATTCAGCGGAGCGTGCTG+AGG | 0.642225 | 1.3:+3889250 | MS.gene67110:CDS |
| CAGTGGTGATGCAGATTCAG+CGG | 0.642820 | 1.3:+3889238 | MS.gene67110:CDS |
| CTGCTCAGATGAGTCTGTAG+GGG | 0.650960 | 1.3:-3893708 | None:intergenic |
| CATAGGTGTAGAGAAACAGA+AGG | 0.668317 | 1.3:-3889780 | None:intergenic |
| TACAACTGTGCAGCTACCTG+AGG | 0.681382 | 1.3:+3889412 | MS.gene67110:CDS |
| TCAGGGTGTTAACTTGGACA+AGG | 0.709142 | 1.3:+3889352 | MS.gene67110:CDS |
| TGAATTCGTGAGGAGCTCTG+CGG | 0.710130 | 1.3:-3893270 | None:intergenic |
| GCTCAGATGAGTCTGTAGGG+GGG | 0.751001 | 1.3:-3893706 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTTATAATTAATCCCA+AGG | + | chr1.3:3893505-3893524 | MS.gene67110:CDS | 15.0% |
| !! | AGAATAAATAGATTTGTATT+GGG | + | chr1.3:3889206-3889225 | MS.gene67110:CDS | 15.0% |
| !! | ATATGTTATAGTTATTGTTT+AGG | + | chr1.3:3889535-3889554 | MS.gene67110:intron | 15.0% |
| !! | TAATTATTAATTGATGTTCT+AGG | + | chr1.3:3892742-3892761 | MS.gene67110:intron | 15.0% |
| !! | TATATATAATCAGTATGTTT+AGG | - | chr1.3:3893228-3893247 | None:intergenic | 15.0% |
| !! | TATGTTATAGTTATTGTTTA+GGG | + | chr1.3:3889536-3889555 | MS.gene67110:intron | 15.0% |
| !! | TTATAAAGATAAACTTTATG+AGG | + | chr1.3:3891876-3891895 | MS.gene67110:intron | 15.0% |
| !!! | ATATAGATTTTCATCATTTT+TGG | - | chr1.3:3890088-3890107 | None:intergenic | 15.0% |
| !!! | TGCAAAATAGATTTTATATT+CGG | + | chr1.3:3890850-3890869 | MS.gene67110:intron | 15.0% |
| !! | AACAAATTGAATTCAAAACT+CGG | - | chr1.3:3890208-3890227 | None:intergenic | 20.0% |
| !! | AAGATTGTATATTTGCATTA+TGG | + | chr1.3:3890638-3890657 | MS.gene67110:intron | 20.0% |
| !! | AGTTTATTAAACAAAGAAGT+CGG | - | chr1.3:3891817-3891836 | None:intergenic | 20.0% |
| !! | ATAAAAGATAGAAAATTCCA+AGG | - | chr1.3:3890597-3890616 | None:intergenic | 20.0% |
| !! | ATATATCTGGATGTTAAAAA+TGG | - | chr1.3:3892362-3892381 | None:intergenic | 20.0% |
| !! | GAAAAAACATTACTATAGAA+GGG | - | chr1.3:3893188-3893207 | None:intergenic | 20.0% |
| !! | GAATAAATAGATTTGTATTG+GGG | + | chr1.3:3889207-3889226 | MS.gene67110:CDS | 20.0% |
| !! | GAGAATAAATAGATTTGTAT+TGG | + | chr1.3:3889205-3889224 | MS.gene67110:CDS | 20.0% |
| !! | TCTTTGATTAAAAATGAATC+AGG | - | chr1.3:3891354-3891373 | None:intergenic | 20.0% |
| !! | TGAAAAAACATTACTATAGA+AGG | - | chr1.3:3893189-3893208 | None:intergenic | 20.0% |
| !!! | AATTTATGAAGTACTATTGT+GGG | + | chr1.3:3892177-3892196 | MS.gene67110:intron | 20.0% |
| !!! | ACAATAATAGTTGAAGTATT+AGG | - | chr1.3:3892130-3892149 | None:intergenic | 20.0% |
| !!! | ATGATGTTTGATTTTATTCT+TGG | + | chr1.3:3889438-3889457 | MS.gene67110:intron | 20.0% |
| !!! | TCATTTATTTTCAGAAATCA+AGG | + | chr1.3:3892520-3892539 | MS.gene67110:CDS | 20.0% |
| !!! | TCTTCATTTTTATTGTTGTT+TGG | + | chr1.3:3889836-3889855 | MS.gene67110:intron | 20.0% |
| !!! | TTTTATATTAGATTGATGCT+CGG | + | chr1.3:3890732-3890751 | MS.gene67110:intron | 20.0% |
| ! | AATAAAAACCAGAAGATTGT+TGG | - | chr1.3:3892805-3892824 | None:intergenic | 25.0% |
| ! | AATCTCTGCAATCATTAAAT+TGG | + | chr1.3:3890150-3890169 | MS.gene67110:intron | 25.0% |
| ! | AATGAATATGTGAAGAAGAA+TGG | + | chr1.3:3889888-3889907 | MS.gene67110:intron | 25.0% |
| ! | ACATAATTACAGACGAATAA+AGG | - | chr1.3:3891942-3891961 | None:intergenic | 25.0% |
| ! | AGTATTTGCTTAATGAGAAT+AGG | + | chr1.3:3889470-3889489 | MS.gene67110:intron | 25.0% |
| ! | ATCTTGATCATATCAAAGTA+TGG | - | chr1.3:3890623-3890642 | None:intergenic | 25.0% |
| ! | ATTCAAAATTGCATGTTTAG+AGG | + | chr1.3:3893288-3893307 | MS.gene67110:CDS | 25.0% |
| ! | ATTGTATATTTGCATTATGG+AGG | + | chr1.3:3890641-3890660 | MS.gene67110:intron | 25.0% |
| ! | ATTTATCTTGTGCGTATTTA+TGG | + | chr1.3:3892826-3892845 | MS.gene67110:intron | 25.0% |
| ! | GAAAATGAAAGAGAAGTTAT+AGG | - | chr1.3:3890672-3890691 | None:intergenic | 25.0% |
| ! | GAGGATATATCTTATTGAAA+AGG | + | chr1.3:3890819-3890838 | MS.gene67110:intron | 25.0% |
| ! | GAGGTGATTAATGTAAAATT+TGG | + | chr1.3:3892094-3892113 | MS.gene67110:intron | 25.0% |
| ! | TCATGTTATTAGAAATGTCT+TGG | + | chr1.3:3892204-3892223 | MS.gene67110:intron | 25.0% |
| ! | TCTTGATCATATCAAAGTAT+GGG | - | chr1.3:3890622-3890641 | None:intergenic | 25.0% |
| ! | TTGTATATTTGCATTATGGA+GGG | + | chr1.3:3890642-3890661 | MS.gene67110:intron | 25.0% |
| ! | TTTCAAATTTATGTATCACC+TGG | - | chr1.3:3892966-3892985 | None:intergenic | 25.0% |
| !! | ATAGATTTTATATTCGGACA+AGG | + | chr1.3:3890856-3890875 | MS.gene67110:intron | 25.0% |
| !! | CAATTTATGAAGTACTATTG+TGG | + | chr1.3:3892176-3892195 | MS.gene67110:intron | 25.0% |
| !!! | ACTGTCACTTCTATTATTTT+TGG | + | chr1.3:3890376-3890395 | MS.gene67110:intron | 25.0% |
| !!! | ATCAGTTGTTTTATCTGTTA+AGG | + | chr1.3:3892678-3892697 | MS.gene67110:intron | 25.0% |
| !!! | TTGAAGTATTAGGTGAATTT+TGG | - | chr1.3:3892120-3892139 | None:intergenic | 25.0% |
| !!! | TTTATTCATGCTTTGAAAGT+TGG | + | chr1.3:3891190-3891209 | MS.gene67110:intron | 25.0% |
| AAAAATTGAGGGAGTGATTA+AGG | + | chr1.3:3889562-3889581 | MS.gene67110:CDS | 30.0% | |
| AAAATTGAGGGAGTGATTAA+GGG | + | chr1.3:3889563-3889582 | MS.gene67110:CDS | 30.0% | |
| AAATCTCCACTGTATAAAGT+AGG | + | chr1.3:3889988-3890007 | MS.gene67110:intron | 30.0% | |
| AAATTACCACAATCCTTTAC+CGG | - | chr1.3:3889605-3889624 | None:intergenic | 30.0% | |
| AAATTGCATGTTTAGAGGTT+TGG | + | chr1.3:3893293-3893312 | MS.gene67110:intron | 30.0% | |
| AAGATTAACGAAGTGAATCT+TGG | - | chr1.3:3890325-3890344 | None:intergenic | 30.0% | |
| AAGCATAAGTGTATTAAGCT+TGG | + | chr1.3:3891657-3891676 | MS.gene67110:intron | 30.0% | |
| AAGTTGAATTTAATGCTTCC+AGG | + | chr1.3:3893376-3893395 | MS.gene67110:intron | 30.0% | |
| AAGTTTGATACTCTATCCTA+TGG | - | chr1.3:3891727-3891746 | None:intergenic | 30.0% | |
| AATCAAACATCATTTACCTC+AGG | - | chr1.3:3889431-3889450 | None:intergenic | 30.0% | |
| AATCATTAAATTGGAGCTGT+TGG | + | chr1.3:3890159-3890178 | MS.gene67110:intron | 30.0% | |
| AATTCTACAAGTGTACTATC+CGG | - | chr1.3:3892312-3892331 | None:intergenic | 30.0% | |
| AGTTTAGCAAAGAAATCAAC+AGG | - | chr1.3:3891968-3891987 | None:intergenic | 30.0% | |
| ATACCTTCTCTATATAGAGA+AGG | - | chr1.3:3893126-3893145 | None:intergenic | 30.0% | |
| ATTACACTTTCAAAGCTTCT+AGG | - | chr1.3:3890519-3890538 | None:intergenic | 30.0% | |
| ATTTATGTATCACCTGGTTA+AGG | - | chr1.3:3892960-3892979 | None:intergenic | 30.0% | |
| ATTTCAATTCCTGGAATTTC+TGG | + | chr1.3:3893871-3893890 | MS.gene67110:CDS | 30.0% | |
| CAAAACAAGAAGACAAAAGA+AGG | + | chr1.3:3893009-3893028 | MS.gene67110:intron | 30.0% | |
| CAGAAAAGTAAGATCAATGT+CGG | - | chr1.3:3890251-3890270 | None:intergenic | 30.0% | |
| GAATCTAATTGACATCAGTA+TGG | - | chr1.3:3891902-3891921 | None:intergenic | 30.0% | |
| GCATAAAAAGGATTTGAATC+AGG | - | chr1.3:3893422-3893441 | None:intergenic | 30.0% | |
| GCGATAATCTTCAAAAATCT+AGG | + | chr1.3:3890558-3890577 | MS.gene67110:intron | 30.0% | |
| GGAACTATGTAAGGTAAATA+CGG | + | chr1.3:3891631-3891650 | MS.gene67110:intron | 30.0% | |
| GTCAATTAGATTCTTGTAGA+TGG | + | chr1.3:3891909-3891928 | MS.gene67110:intron | 30.0% | |
| GTTATAGTTATTGTTTAGGG+TGG | + | chr1.3:3889539-3889558 | MS.gene67110:intron | 30.0% | |
| TAAAAAGGATTTGAATCAGG+AGG | - | chr1.3:3893419-3893438 | None:intergenic | 30.0% | |
| TACAACGACACTCTTAATAT+GGG | + | chr1.3:3890013-3890032 | MS.gene67110:intron | 30.0% | |
| TATAAGTCCATCATGTATTG+TGG | + | chr1.3:3890429-3890448 | MS.gene67110:intron | 30.0% | |
| TGCATCATAACAAAACAAAC+AGG | - | chr1.3:3893048-3893067 | None:intergenic | 30.0% | |
| TGTAATCCTACTTTATACAG+TGG | - | chr1.3:3889997-3890016 | None:intergenic | 30.0% | |
| TTACAACGACACTCTTAATA+TGG | + | chr1.3:3890012-3890031 | MS.gene67110:intron | 30.0% | |
| TTTCATGACAACACTGAATT+TGG | - | chr1.3:3890124-3890143 | None:intergenic | 30.0% | |
| TTTCCAAAACCAGCATAAAA+AGG | - | chr1.3:3893434-3893453 | None:intergenic | 30.0% | |
| TTTCCTTCTCTATATAGAGA+AGG | + | chr1.3:3893120-3893139 | MS.gene67110:CDS | 30.0% | |
| TTTCTCTTACAAGCACAATA+GGG | + | chr1.3:3891044-3891063 | MS.gene67110:intron | 30.0% | |
| ! | AGTTTTCTTTCTTTCCGTAT+GGG | - | chr1.3:3889333-3889352 | None:intergenic | 30.0% |
| ! | ATAGAGTATCAAACTTAGTC+TGG | + | chr1.3:3891731-3891750 | MS.gene67110:intron | 30.0% |
| ! | ATCCTTTTATTGTTCCATTC+TGG | + | chr1.3:3892072-3892091 | MS.gene67110:intron | 30.0% |
| ! | CATGATTTTCTGTAATTGGA+TGG | + | chr1.3:3891598-3891617 | MS.gene67110:intron | 30.0% |
| ! | CATTTTTCTCACATATGACA+CGG | + | chr1.3:3891395-3891414 | MS.gene67110:intron | 30.0% |
| ! | CTGTCATGATTTTCTGTAAT+TGG | + | chr1.3:3891594-3891613 | MS.gene67110:intron | 30.0% |
| ! | CTTAAGGTAACTGATTTCAT+CGG | - | chr1.3:3893465-3893484 | None:intergenic | 30.0% |
| ! | GATTCAAATCCTTTTTATGC+TGG | + | chr1.3:3893422-3893441 | MS.gene67110:CDS | 30.0% |
| ! | TAGCATTCACTGATAATGAT+TGG | + | chr1.3:3892020-3892039 | MS.gene67110:intron | 30.0% |
| ! | TTGCTTTGTATTTTCACCAT+AGG | + | chr1.3:3891708-3891727 | MS.gene67110:intron | 30.0% |
| ! | TTTTGATGAACTTTCCCATA+CGG | + | chr1.3:3889316-3889335 | MS.gene67110:CDS | 30.0% |
| !! | CAATACATGATGGACTTATA+AGG | - | chr1.3:3890429-3890448 | None:intergenic | 30.0% |
| !! | TCATACCTTTAAGATCGAAT+TGG | + | chr1.3:3892149-3892168 | MS.gene67110:intron | 30.0% |
| !! | TTGTGGTAATTTTGATGTTG+CGG | + | chr1.3:3889613-3889632 | MS.gene67110:CDS | 30.0% |
| !!! | AATCCTTTTTATGCTGGTTT+TGG | + | chr1.3:3893428-3893447 | MS.gene67110:CDS | 30.0% |
| !!! | TGGTCACTTTTAAGATGATA+AGG | + | chr1.3:3892224-3892243 | MS.gene67110:intron | 30.0% |
| !!! | TGTTTGTTTTGTTATGATGC+AGG | + | chr1.3:3893047-3893066 | MS.gene67110:intron | 30.0% |
| AAATCTCGAACTGTCAACAT+TGG | + | chr1.3:3889662-3889681 | MS.gene67110:CDS | 35.0% | |
| AAGGGATTGTTCTGTTAAGA+AGG | + | chr1.3:3889688-3889707 | MS.gene67110:CDS | 35.0% | |
| AAGGTTGAATAGGAATTGTC+TGG | - | chr1.3:3892941-3892960 | None:intergenic | 35.0% | |
| AATAGACATGACACACTCTA+AGG | - | chr1.3:3891282-3891301 | None:intergenic | 35.0% | |
| ACAACACTGAATTTGGATTC+AGG | - | chr1.3:3890117-3890136 | None:intergenic | 35.0% | |
| ACGGAAAGAAAGAAAACTCA+GGG | + | chr1.3:3889335-3889354 | MS.gene67110:CDS | 35.0% | |
| AGAATTAAGCTCCAGAACAA+AGG | - | chr1.3:3892386-3892405 | None:intergenic | 35.0% | |
| AGCCTAGTTAGATAAAAACG+AGG | - | chr1.3:3890047-3890066 | None:intergenic | 35.0% | |
| ATAGTGATATCAGATGTGGA+TGG | + | chr1.3:3890782-3890801 | MS.gene67110:CDS | 35.0% | |
| ATAGTGCTAATGAGATACTG+AGG | + | chr1.3:3891487-3891506 | MS.gene67110:intron | 35.0% | |
| ATATGAGAGACTCATTACCT+TGG | - | chr1.3:3893525-3893544 | None:intergenic | 35.0% | |
| ATCATGAGAACAGGGTAAAT+AGG | + | chr1.3:3890979-3890998 | MS.gene67110:intron | 35.0% | |
| ATCATGCAGATTGAATTCTG+GGG | - | chr1.3:3892277-3892296 | None:intergenic | 35.0% | |
| ATTCCTATTCAACCTTAACC+AGG | + | chr1.3:3892945-3892964 | MS.gene67110:CDS | 35.0% | |
| CACTCTTAATATGGGAGAAT+TGG | + | chr1.3:3890021-3890040 | MS.gene67110:intron | 35.0% | |
| CACTTGAAGAAAACTAGACA+TGG | + | chr1.3:3891441-3891460 | MS.gene67110:intron | 35.0% | |
| CATCATGCAGATTGAATTCT+GGG | - | chr1.3:3892278-3892297 | None:intergenic | 35.0% | |
| CCTAATTGAGGAACTATGTA+AGG | + | chr1.3:3891622-3891641 | MS.gene67110:intron | 35.0% | |
| CCTTACATAGTTCCTCAATT+AGG | - | chr1.3:3891625-3891644 | None:intergenic | 35.0% | |
| CGATGAAATCAGTTACCTTA+AGG | + | chr1.3:3893463-3893482 | MS.gene67110:CDS | 35.0% | |
| CTCCAGAATGGAACAATAAA+AGG | - | chr1.3:3892077-3892096 | None:intergenic | 35.0% | |
| GAAATCAGTTACCTTAAGGT+TGG | + | chr1.3:3893467-3893486 | MS.gene67110:CDS | 35.0% | |
| GAGAAAGTCAAGTTTGAATC+TGG | + | chr1.3:3889374-3889393 | MS.gene67110:CDS | 35.0% | |
| GAGTTTGACATATGTAAGAC+TGG | + | chr1.3:3892249-3892268 | MS.gene67110:intron | 35.0% | |
| GATAGAAAATTCCAAGGTCT+AGG | - | chr1.3:3890591-3890610 | None:intergenic | 35.0% | |
| GTCAACCAATTCGATCTTAA+AGG | - | chr1.3:3892157-3892176 | None:intergenic | 35.0% | |
| GTCAATTCATGCCTTTAGTT+GGG | + | chr1.3:3892471-3892490 | MS.gene67110:CDS | 35.0% | |
| GTCATATATATGGAGAGAGA+TGG | - | chr1.3:3893792-3893811 | None:intergenic | 35.0% | |
| GTTTCTCTTACAAGCACAAT+AGG | + | chr1.3:3891043-3891062 | MS.gene67110:intron | 35.0% | |
| TAATTGGATGGTCCTAATTG+AGG | + | chr1.3:3891610-3891629 | MS.gene67110:intron | 35.0% | |
| TACATTAATCACCTCCAGAA+TGG | - | chr1.3:3892089-3892108 | None:intergenic | 35.0% | |
| TACGGAAAGAAAGAAAACTC+AGG | + | chr1.3:3889334-3889353 | MS.gene67110:CDS | 35.0% | |
| TAGACATGACTACATGAGAA+CGG | - | chr1.3:3893600-3893619 | None:intergenic | 35.0% | |
| TAGTGATATCAGATGTGGAT+GGG | + | chr1.3:3890783-3890802 | MS.gene67110:CDS | 35.0% | |
| TATGAGAGACTCATTACCTT+GGG | - | chr1.3:3893524-3893543 | None:intergenic | 35.0% | |
| TCATCATGCAGATTGAATTC+TGG | - | chr1.3:3892279-3892298 | None:intergenic | 35.0% | |
| TCATGAGAACAGGGTAAATA+GGG | + | chr1.3:3890980-3890999 | MS.gene67110:intron | 35.0% | |
| TCATTATCAGTGAATGCTAC+TGG | - | chr1.3:3892019-3892038 | None:intergenic | 35.0% | |
| TCCATATATATGACGTCACA+AGG | + | chr1.3:3893798-3893817 | MS.gene67110:intron | 35.0% | |
| TCCTTGTGACGTCATATATA+TGG | - | chr1.3:3893802-3893821 | None:intergenic | 35.0% | |
| TCGTATAGTGATATCAGATG+TGG | + | chr1.3:3890778-3890797 | MS.gene67110:CDS | 35.0% | |
| TGGATGTTAAAAATGGTTGC+AGG | - | chr1.3:3892355-3892374 | None:intergenic | 35.0% | |
| TGTCTATTTCAAACCCAACA+AGG | + | chr1.3:3891294-3891313 | MS.gene67110:intron | 35.0% | |
| TGTTTCTCTACACCTATGAT+GGG | + | chr1.3:3889785-3889804 | MS.gene67110:CDS | 35.0% | |
| TTCTCATGTAGTCATGTCTA+AGG | + | chr1.3:3893600-3893619 | MS.gene67110:intron | 35.0% | |
| ! | ATTTGAGTATCGTCATTGCT+AGG | + | chr1.3:3893348-3893367 | MS.gene67110:intron | 35.0% |
| ! | ATTTTGTGTCTAAGCAACGT+CGG | - | chr1.3:3893649-3893668 | None:intergenic | 35.0% |
| ! | CATGCAATTTTGAATTCGTG+AGG | - | chr1.3:3893283-3893302 | None:intergenic | 35.0% |
| ! | CTTTTATTGTTCCATTCTGG+AGG | + | chr1.3:3892075-3892094 | MS.gene67110:intron | 35.0% |
| ! | GAGTTTTCTTTCTTTCCGTA+TGG | - | chr1.3:3889334-3889353 | None:intergenic | 35.0% |
| ! | GCTTGGAGTATATATGCTTT+TGG | + | chr1.3:3891674-3891693 | MS.gene67110:intron | 35.0% |
| ! | GTTTAGGGTGGAAAAATTGA+GGG | + | chr1.3:3889551-3889570 | MS.gene67110:intron | 35.0% |
| ! | TAGTCATGTCTAAGGTTTCA+GGG | + | chr1.3:3893608-3893627 | MS.gene67110:intron | 35.0% |
| ! | TGTTGACAGTTCGAGATTTT+TGG | - | chr1.3:3889661-3889680 | None:intergenic | 35.0% |
| ! | TGTTTAGGGTGGAAAAATTG+AGG | + | chr1.3:3889550-3889569 | MS.gene67110:intron | 35.0% |
| !! | AATTTTGATGTTGCGGATGT+TGG | + | chr1.3:3889620-3889639 | MS.gene67110:CDS | 35.0% |
| !! | ATCTTTGAGATCATGAGAAC+AGG | + | chr1.3:3890970-3890989 | MS.gene67110:intron | 35.0% |
| !! | CGACATTGATCTTACTTTTC+TGG | + | chr1.3:3890249-3890268 | MS.gene67110:intron | 35.0% |
| !! | CTCGGATATTTTTGTGGAAA+TGG | + | chr1.3:3890750-3890769 | MS.gene67110:CDS | 35.0% |
| !! | CTGAAAAGTGTGTTCTGTTT+TGG | + | chr1.3:3889500-3889519 | MS.gene67110:intron | 35.0% |
| !! | GTTTTGTTATGATGCAGGAT+GGG | + | chr1.3:3893052-3893071 | MS.gene67110:intron | 35.0% |
| !! | TCGTTTTTATCTAACTAGGC+TGG | + | chr1.3:3890046-3890065 | MS.gene67110:intron | 35.0% |
| !! | TCTTTGAGATCATGAGAACA+GGG | + | chr1.3:3890971-3890990 | MS.gene67110:intron | 35.0% |
| !! | TGTTTTGTTATGATGCAGGA+TGG | + | chr1.3:3893051-3893070 | MS.gene67110:intron | 35.0% |
| !! | TTGATGCTCGGATATTTTTG+TGG | + | chr1.3:3890744-3890763 | MS.gene67110:CDS | 35.0% |
| !! | TTGGCAAAAGTACTTCTCTT+GGG | + | chr1.3:3889855-3889874 | MS.gene67110:intron | 35.0% |
| !! | TTTGGCAAAAGTACTTCTCT+TGG | + | chr1.3:3889854-3889873 | MS.gene67110:intron | 35.0% |
| !!! | TCTCTTGTTTTATGTGTTGC+AGG | + | chr1.3:3892435-3892454 | MS.gene67110:intron | 35.0% |
| AAACCAGAAGATTGTTGGTG+TGG | - | chr1.3:3892800-3892819 | None:intergenic | 40.0% | |
| AACCAGAAGATTGTTGGTGT+GGG | - | chr1.3:3892799-3892818 | None:intergenic | 40.0% | |
| AACTGTCAACATTGGTCGAA+GGG | + | chr1.3:3889670-3889689 | MS.gene67110:CDS | 40.0% | |
| AAGTCCATCATGTATTGTGG+AGG | + | chr1.3:3890432-3890451 | MS.gene67110:intron | 40.0% | |
| ACTACATGAGAACGGAAGTT+TGG | - | chr1.3:3893592-3893611 | None:intergenic | 40.0% | |
| ACTGTCATCCTTGAATCTGA+AGG | + | chr1.3:3889739-3889758 | MS.gene67110:CDS | 40.0% | |
| AGTCAAGTTTGAATCTGGCA+AGG | + | chr1.3:3889379-3889398 | MS.gene67110:CDS | 40.0% | |
| AGTCCATCATGTATTGTGGA+GGG | + | chr1.3:3890433-3890452 | MS.gene67110:intron | 40.0% | |
| ATAGATTTGTATTGGGGCCA+AGG | + | chr1.3:3889213-3889232 | MS.gene67110:CDS | 40.0% | |
| ATAGGAATTGTCTGGTGTGA+TGG | - | chr1.3:3892933-3892952 | None:intergenic | 40.0% | |
| ATCCGATTCTCTTAAGAGCA+GGG | - | chr1.3:3891538-3891557 | None:intergenic | 40.0% | |
| ATCTTACCTTTCTCTCGAAG+AGG | + | chr1.3:3890340-3890359 | MS.gene67110:intron | 40.0% | |
| ATGGCATGGATATTCCTTGT+TGG | - | chr1.3:3891311-3891330 | None:intergenic | 40.0% | |
| ATGTGGATGGGACTATTACA+AGG | + | chr1.3:3890795-3890814 | MS.gene67110:CDS | 40.0% | |
| CAGCCAAGTTGTTGGATTTA+AGG | + | chr1.3:3889276-3889295 | MS.gene67110:CDS | 40.0% | |
| CATAGGTGTAGAGAAACAGA+AGG | - | chr1.3:3889783-3889802 | None:intergenic | 40.0% | |
| CATCCTTGAATCTGAAGGAA+GGG | + | chr1.3:3889744-3889763 | MS.gene67110:CDS | 40.0% | |
| CCAAGTTGTTGGATTTAAGG+TGG | + | chr1.3:3889279-3889298 | MS.gene67110:CDS | 40.0% | |
| CCACCTTAAATCCAACAACT+TGG | - | chr1.3:3889282-3889301 | None:intergenic | 40.0% | |
| CCAGATATATGCCTTTGTTC+TGG | + | chr1.3:3892372-3892391 | MS.gene67110:intron | 40.0% | |
| CTTAAGGTTGGAATCGCTAA+AGG | + | chr1.3:3893479-3893498 | MS.gene67110:CDS | 40.0% | |
| CTTTAGCGATTCCAACCTTA+AGG | - | chr1.3:3893481-3893500 | None:intergenic | 40.0% | |
| GAAATTACAACAGGACCATC+TGG | - | chr1.3:3893087-3893106 | None:intergenic | 40.0% | |
| GACTGATTACAATGAGTGCA+TGG | + | chr1.3:3890274-3890293 | MS.gene67110:intron | 40.0% | |
| GATGACAGTTGTTCAGAAGT+TGG | - | chr1.3:3889728-3889747 | None:intergenic | 40.0% | |
| GCATGATGATAGATGAACTC+CGG | + | chr1.3:3892290-3892309 | MS.gene67110:intron | 40.0% | |
| GGTCAATTCATGCCTTTAGT+TGG | + | chr1.3:3892470-3892489 | MS.gene67110:CDS | 40.0% | |
| GTTGAAATATTGACACCGAG+TGG | + | chr1.3:3891246-3891265 | MS.gene67110:intron | 40.0% | |
| GTTTCTCTACACCTATGATG+GGG | + | chr1.3:3889786-3889805 | MS.gene67110:CDS | 40.0% | |
| TAAGGAACCATTGATCCACT+CGG | - | chr1.3:3891264-3891283 | None:intergenic | 40.0% | |
| TAGAGAGATTCATCATGGCA+TGG | - | chr1.3:3891325-3891344 | None:intergenic | 40.0% | |
| TAGGAATTGTCTGGTGTGAT+GGG | - | chr1.3:3892932-3892951 | None:intergenic | 40.0% | |
| TAGGATTAACTCCTAGACCT+TGG | + | chr1.3:3890577-3890596 | MS.gene67110:intron | 40.0% | |
| TATCCGATTCTCTTAAGAGC+AGG | - | chr1.3:3891539-3891558 | None:intergenic | 40.0% | |
| TCACCTGGTTAAGGTTGAAT+AGG | - | chr1.3:3892951-3892970 | None:intergenic | 40.0% | |
| TCATCCTTGAATCTGAAGGA+AGG | + | chr1.3:3889743-3889762 | MS.gene67110:CDS | 40.0% | |
| TGATCTAGAGATACCGGTAA+AGG | + | chr1.3:3889589-3889608 | MS.gene67110:CDS | 40.0% | |
| TGGCATGGATATTCCTTGTT+GGG | - | chr1.3:3891310-3891329 | None:intergenic | 40.0% | |
| TTAATGCTTCCAGGACATCA+GGG | + | chr1.3:3893385-3893404 | MS.gene67110:intron | 40.0% | |
| TTCCACACATCACAGGAAAA+TGG | + | chr1.3:3892865-3892884 | MS.gene67110:intron | 40.0% | |
| TTCCCTGCTCTTAAGAGAAT+CGG | + | chr1.3:3891533-3891552 | MS.gene67110:intron | 40.0% | |
| TTTAATGCTTCCAGGACATC+AGG | + | chr1.3:3893384-3893403 | MS.gene67110:intron | 40.0% | |
| TTTCCTGTGATGTGTGGAAT+AGG | - | chr1.3:3892864-3892883 | None:intergenic | 40.0% | |
| ! | CCAGAACAAAGGCATATATC+TGG | - | chr1.3:3892375-3892394 | None:intergenic | 40.0% |
| ! | CTGTTTCTCTACACCTATGA+TGG | + | chr1.3:3889784-3889803 | MS.gene67110:CDS | 40.0% |
| ! | GAAAACTCAGGGTGTTAACT+TGG | + | chr1.3:3889346-3889365 | MS.gene67110:CDS | 40.0% |
| ! | GTAGTCATGTCTAAGGTTTC+AGG | + | chr1.3:3893607-3893626 | MS.gene67110:intron | 40.0% |
| !! | AGCTCTAGAGAGATTCATCA+TGG | - | chr1.3:3891330-3891349 | None:intergenic | 40.0% |
| !! | GAGCACTGAGAAAAAGTATC+TGG | - | chr1.3:3892894-3892913 | None:intergenic | 40.0% |
| !! | GGCCTCGTTTTTATCTAACT+AGG | + | chr1.3:3890042-3890061 | MS.gene67110:intron | 40.0% |
| !! | TGAATGCTACTGGCTAGTTT+AGG | - | chr1.3:3892009-3892028 | None:intergenic | 40.0% |
| ACCAATGTTCAGCAAGCACA+AGG | - | chr1.3:3893842-3893861 | None:intergenic | 45.0% | |
| AGAAGGAAAAAGTCCGTCAG+GGG | - | chr1.3:3893109-3893128 | None:intergenic | 45.0% | |
| AGAGAAGGAAAAAGTCCGTC+AGG | - | chr1.3:3893111-3893130 | None:intergenic | 45.0% | |
| ATTGACACCGAGTGGATCAA+TGG | + | chr1.3:3891254-3891273 | MS.gene67110:intron | 45.0% | |
| CATCCCTCCACAATACATGA+TGG | - | chr1.3:3890439-3890458 | None:intergenic | 45.0% | |
| CCAATGTTCAGCAAGCACAA+GGG | - | chr1.3:3893841-3893860 | None:intergenic | 45.0% | |
| CCTGTTGTAATTTCCCCTGA+CGG | + | chr1.3:3893093-3893112 | MS.gene67110:CDS | 45.0% | |
| CGTAAACCTCTTCGAGAGAA+AGG | - | chr1.3:3890349-3890368 | None:intergenic | 45.0% | |
| CTAACTGACAGCTCTCATCT+AGG | - | chr1.3:3891103-3891122 | None:intergenic | 45.0% | |
| CTAGATGAGAGCTGTCAGTT+AGG | + | chr1.3:3891101-3891120 | MS.gene67110:intron | 45.0% | |
| CTGCGTGTTCTTAAAACACG+TGG | + | chr1.3:3892641-3892660 | MS.gene67110:intron | 45.0% | |
| GAACTGTCAACATTGGTCGA+AGG | + | chr1.3:3889669-3889688 | MS.gene67110:CDS | 45.0% | |
| GACCAGTCAATCCCAACTAA+AGG | - | chr1.3:3892485-3892504 | None:intergenic | 45.0% | |
| GAGAAGGAAAAAGTCCGTCA+GGG | - | chr1.3:3893110-3893129 | None:intergenic | 45.0% | |
| GAGATACCGGTAAAGGATTG+TGG | + | chr1.3:3889596-3889615 | MS.gene67110:CDS | 45.0% | |
| GATGGGAAAGTCTTACCAGA+TGG | + | chr1.3:3893069-3893088 | MS.gene67110:CDS | 45.0% | |
| GATGGGACTATTACAAGGTG+AGG | + | chr1.3:3890800-3890819 | MS.gene67110:intron | 45.0% | |
| TCATGTATTGTGGAGGGATG+TGG | + | chr1.3:3890439-3890458 | MS.gene67110:intron | 45.0% | |
| TCTCCCTTCCTTCAGATTCA+AGG | - | chr1.3:3889750-3889769 | None:intergenic | 45.0% | |
| TCTCTTCATGCTCTCGTGAA+CGG | + | chr1.3:3893677-3893696 | MS.gene67110:CDS | 45.0% | |
| TGCAGGAGGATTTCAATTCC+TGG | + | chr1.3:3893862-3893881 | MS.gene67110:intron | 45.0% | |
| TGCCTTTAGTTGGGATTGAC+TGG | + | chr1.3:3892480-3892499 | MS.gene67110:CDS | 45.0% | |
| TGTGATGTGTGGAATAGGCA+AGG | - | chr1.3:3892859-3892878 | None:intergenic | 45.0% | |
| TTGCCTATTCCACACATCAC+AGG | + | chr1.3:3892858-3892877 | MS.gene67110:intron | 45.0% | |
| ! | TCAGGGTGTTAACTTGGACA+AGG | + | chr1.3:3889352-3889371 | MS.gene67110:CDS | 45.0% |
| !! | AGCCATTTTCCTGTGATGTG+TGG | - | chr1.3:3892870-3892889 | None:intergenic | 45.0% |
| !! | GGGTGTTGATCTAGAGATAC+CGG | + | chr1.3:3889583-3889602 | MS.gene67110:CDS | 45.0% |
| ACCTGCTCAGATGAGTCTGT+AGG | - | chr1.3:3893713-3893732 | None:intergenic | 50.0% | |
| AGAAGATTGTTGGTGTGGGC+AGG | - | chr1.3:3892795-3892814 | None:intergenic | 50.0% | |
| CAGTGCTCGTGCAATTTCTC+AGG | + | chr1.3:3892906-3892925 | MS.gene67110:CDS | 50.0% | |
| CCGTCAGGGGAAATTACAAC+AGG | - | chr1.3:3893096-3893115 | None:intergenic | 50.0% | |
| CCTGCTCAGATGAGTCTGTA+GGG | - | chr1.3:3893712-3893731 | None:intergenic | 50.0% | |
| CTGCTCAGATGAGTCTGTAG+GGG | - | chr1.3:3893711-3893730 | None:intergenic | 50.0% | |
| GAAGATTGTTGGTGTGGGCA+GGG | - | chr1.3:3892794-3892813 | None:intergenic | 50.0% | |
| GGAGCTGTTGGATGAAGATC+AGG | + | chr1.3:3890171-3890190 | MS.gene67110:intron | 50.0% | |
| GGGCAACTTCCAGAAATTCC+AGG | - | chr1.3:3893883-3893902 | None:intergenic | 50.0% | |
| TACAACTGTGCAGCTACCTG+AGG | + | chr1.3:3889412-3889431 | MS.gene67110:CDS | 50.0% | |
| TGAATTCGTGAGGAGCTCTG+CGG | - | chr1.3:3893273-3893292 | None:intergenic | 50.0% | |
| TGAGGTTGCAGCCAAGTTGT+TGG | + | chr1.3:3889268-3889287 | MS.gene67110:CDS | 50.0% | |
| TGCCCACACCAACAATCTTC+TGG | + | chr1.3:3892794-3892813 | MS.gene67110:intron | 50.0% | |
| TGCTCAGATGAGTCTGTAGG+GGG | - | chr1.3:3893710-3893729 | None:intergenic | 50.0% | |
| TGTTGCAGGTCAGACGTTCT+AGG | + | chr1.3:3892449-3892468 | MS.gene67110:intron | 50.0% | |
| ! | CAGTGGTGATGCAGATTCAG+CGG | + | chr1.3:3889238-3889257 | MS.gene67110:CDS | 50.0% |
| ! | CCCTTGTGCTTGCTGAACAT+TGG | + | chr1.3:3893838-3893857 | MS.gene67110:intron | 50.0% |
| ! | CTACACCTATGATGGGGATG+CGG | + | chr1.3:3889792-3889811 | MS.gene67110:CDS | 50.0% |
| ! | GCTTGCTGAACATTGGTTGC+AGG | + | chr1.3:3893845-3893864 | MS.gene67110:intron | 50.0% |
| ! | TGCTGAACATTGGTTGCAGG+AGG | + | chr1.3:3893848-3893867 | MS.gene67110:intron | 50.0% |
| !! | GAAAAAGTGCCCTGATGTCC+TGG | - | chr1.3:3893397-3893416 | None:intergenic | 50.0% |
| CCCTACAGACTCATCTGAGC+AGG | + | chr1.3:3893709-3893728 | MS.gene67110:CDS | 55.0% | |
| CGCTGAATCTGCATCACCAC+TGG | - | chr1.3:3889240-3889259 | None:intergenic | 55.0% | |
| GCTCAGATGAGTCTGTAGGG+GGG | - | chr1.3:3893709-3893728 | None:intergenic | 55.0% | |
| TAGCCTGTTTGCGCAGTGCT+TGG | + | chr1.3:3891774-3891793 | MS.gene67110:intron | 55.0% | |
| TCTGCATCACCACTGGACCT+TGG | - | chr1.3:3889233-3889252 | None:intergenic | 55.0% | |
| TGTTGGTGTGGGCAGGGTAA+AGG | - | chr1.3:3892788-3892807 | None:intergenic | 55.0% | |
| ! | AGACCAAGCACTGCGCAAAC+AGG | - | chr1.3:3891780-3891799 | None:intergenic | 55.0% |
| ! | GGGATTGACTGGTCACAGAC+AGG | + | chr1.3:3892491-3892510 | MS.gene67110:CDS | 55.0% |
| ACCTGCCGCATCCCCATCAT+AGG | - | chr1.3:3889800-3889819 | None:intergenic | 60.0% | |
| AGATTCAGCGGAGCGTGCTG+AGG | + | chr1.3:3889250-3889269 | MS.gene67110:CDS | 60.0% | |
| GTATTGGGGCCAAGGTCCAG+TGG | + | chr1.3:3889221-3889240 | MS.gene67110:CDS | 60.0% | |
| ! | ACCTATGATGGGGATGCGGC+AGG | + | chr1.3:3889796-3889815 | MS.gene67110:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 3889185 | 3893911 | 3889185 | ID=MS.gene67110 |
| chr1.3 | mRNA | 3889185 | 3893911 | 3889185 | ID=MS.gene67110.t1;Parent=MS.gene67110 |
| chr1.3 | exon | 3889185 | 3889433 | 3889185 | ID=MS.gene67110.t1.exon1;Parent=MS.gene67110.t1 |
| chr1.3 | CDS | 3889185 | 3889433 | 3889185 | ID=cds.MS.gene67110.t1;Parent=MS.gene67110.t1 |
| chr1.3 | exon | 3889557 | 3889817 | 3889557 | ID=MS.gene67110.t1.exon2;Parent=MS.gene67110.t1 |
| chr1.3 | CDS | 3889557 | 3889817 | 3889557 | ID=cds.MS.gene67110.t1;Parent=MS.gene67110.t1 |
| chr1.3 | exon | 3890743 | 3890816 | 3890743 | ID=MS.gene67110.t1.exon3;Parent=MS.gene67110.t1 |
| chr1.3 | CDS | 3890743 | 3890816 | 3890743 | ID=cds.MS.gene67110.t1;Parent=MS.gene67110.t1 |
| chr1.3 | exon | 3892457 | 3892541 | 3892457 | ID=MS.gene67110.t1.exon4;Parent=MS.gene67110.t1 |
| chr1.3 | CDS | 3892457 | 3892541 | 3892457 | ID=cds.MS.gene67110.t1;Parent=MS.gene67110.t1 |
| chr1.3 | exon | 3892880 | 3892966 | 3892880 | ID=MS.gene67110.t1.exon5;Parent=MS.gene67110.t1 |
| chr1.3 | CDS | 3892880 | 3892966 | 3892880 | ID=cds.MS.gene67110.t1;Parent=MS.gene67110.t1 |
| chr1.3 | exon | 3893069 | 3893141 | 3893069 | ID=MS.gene67110.t1.exon6;Parent=MS.gene67110.t1 |
| chr1.3 | CDS | 3893069 | 3893141 | 3893069 | ID=cds.MS.gene67110.t1;Parent=MS.gene67110.t1 |
| chr1.3 | exon | 3893266 | 3893309 | 3893266 | ID=MS.gene67110.t1.exon7;Parent=MS.gene67110.t1 |
| chr1.3 | CDS | 3893266 | 3893309 | 3893266 | ID=cds.MS.gene67110.t1;Parent=MS.gene67110.t1 |
| chr1.3 | exon | 3893398 | 3893526 | 3893398 | ID=MS.gene67110.t1.exon8;Parent=MS.gene67110.t1 |
| chr1.3 | CDS | 3893398 | 3893526 | 3893398 | ID=cds.MS.gene67110.t1;Parent=MS.gene67110.t1 |
| chr1.3 | exon | 3893629 | 3893730 | 3893629 | ID=MS.gene67110.t1.exon9;Parent=MS.gene67110.t1 |
| chr1.3 | CDS | 3893629 | 3893730 | 3893629 | ID=cds.MS.gene67110.t1;Parent=MS.gene67110.t1 |
| chr1.3 | exon | 3893867 | 3893911 | 3893867 | ID=MS.gene67110.t1.exon10;Parent=MS.gene67110.t1 |
| chr1.3 | CDS | 3893867 | 3893911 | 3893867 | ID=cds.MS.gene67110.t1;Parent=MS.gene67110.t1 |
| Gene Sequence |
| Protein sequence |
