AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67315

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67315.t1 MTR_2g435800 98.230 565 10 0 1 565 1 565 0.0 1166
MS.gene67315.t1 MTR_2g436030 99.550 222 1 0 593 814 38 259 5.19e-155 452
MS.gene67315.t1 MTR_4g060480 26.736 288 199 6 519 804 134 411 5.38e-21 97.1
MS.gene67315.t1 MTR_4g060480 27.317 205 143 4 519 723 134 332 1.39e-16 82.4
MS.gene67315.t1 MTR_0837s0010 27.170 265 175 6 538 797 134 385 2.19e-14 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67315.t1 AT3G06810 75.031 813 189 6 8 812 15 821 0.0 1267
MS.gene67315.t1 AT3G45300 26.389 288 200 6 519 804 126 403 9.64e-18 87.0

Find 207 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAACCATACTGGTAATT+TGG 0.098346 2.3:+55148215 None:intergenic
TATTGTTCTTCCAACGTTTC+TGG 0.159631 2.3:-55149142 MS.gene67315:CDS
TGCAATGATCCAACTGTTAT+TGG 0.184378 2.3:-55148288 MS.gene67315:CDS
TGCTGTTGAAAGAGAGTTTC+AGG 0.187974 2.3:-55148852 MS.gene67315:intron
AGTTCATGGGTCATTCTCTT+TGG 0.203296 2.3:-55144523 MS.gene67315:CDS
TTGACAAGAAATATGTTCTT+AGG 0.250519 2.3:-55148910 MS.gene67315:CDS
GCTCTTAGTAGAAAAGCTTT+TGG 0.266733 2.3:-55142551 MS.gene67315:CDS
GGAGATTCATATATTATAAA+TGG 0.268356 2.3:-55143776 MS.gene67315:CDS
GGAGCAAACCTTCCCTCATT+TGG 0.284918 2.3:+55145886 None:intergenic
ATACAGTGGTGCAGCCTTCC+AGG 0.288590 2.3:+55142623 None:intergenic
CAGTGTTATGTTAAAGATAT+TGG 0.292618 2.3:-55146789 MS.gene67315:CDS
TTTGATGGAACACTCAATAT+TGG 0.293143 2.3:+55144231 None:intergenic
TTGCACAAGCAGAAAACTTT+AGG 0.303903 2.3:+55148306 None:intergenic
TGGCTCATTTGTTTCAGATT+TGG 0.305296 2.3:-55142510 MS.gene67315:CDS
CTGCTGCAGGATCGAGTAAT+TGG 0.307229 2.3:-55147103 MS.gene67315:intron
GGTCTAACAAATCTTGAATA+TGG 0.313466 2.3:-55144557 MS.gene67315:CDS
GTTCATGGGTCATTCTCTTT+GGG 0.314341 2.3:-55144522 MS.gene67315:CDS
AAGAAGGCCTGTGGAACTTA+TGG 0.315111 2.3:-55145711 MS.gene67315:CDS
AAATACTCCATAATATAAAA+TGG 0.316567 2.3:+55148261 None:intergenic
ATGCTGGAGTGTATAATAGA+TGG 0.321792 2.3:-55146521 MS.gene67315:CDS
GCCTGCCACAAATATCTTAA+TGG 0.322584 2.3:-55143442 MS.gene67315:CDS
AAATGTTTGCTTTGATTGAT+TGG 0.326074 2.3:-55147481 MS.gene67315:CDS
AAGAGACCTTTGACGGTGTT+TGG 0.327890 2.3:-55143519 MS.gene67315:CDS
CTTCCTCAGCATCCTCCTTC+AGG 0.334960 2.3:-55146063 MS.gene67315:intron
TTGAAATGAGTTGGAGAGAG+AGG 0.334992 2.3:+55149115 None:intergenic
TTTGATGCCAGGGAAGAAAA+TGG 0.339745 2.3:-55146602 MS.gene67315:intron
TTCTATTTGTTCTCAAAGCT+TGG 0.349250 2.3:+55142016 None:intergenic
ACAAACCATACTGGTAATTT+GGG 0.349481 2.3:+55148216 None:intergenic
ATCCCTTCTGAAGATTCTTC+AGG 0.367408 2.3:-55147446 MS.gene67315:CDS
TCCATCGGTCTGGGAAATTA+CGG 0.368840 2.3:-55147872 MS.gene67315:CDS
CTTTGCTTGAGGGGAAGATT+AGG 0.370862 2.3:-55144300 MS.gene67315:CDS
GAGCAAACCTTCCCTCATTT+GGG 0.379348 2.3:+55145887 None:intergenic
GATTCAAATGACTTGTTGTT+GGG 0.380148 2.3:-55144584 MS.gene67315:CDS
TGGATACCTTTGTGAGTTCA+TGG 0.386228 2.3:-55144537 MS.gene67315:CDS
AAGAACATATTTCTTGTCAA+TGG 0.387834 2.3:+55148913 None:intergenic
GAATAAAATAATTAAGTTCA+TGG 0.390411 2.3:-55145839 MS.gene67315:CDS
GTCTAATCCAACATACTTGA+TGG 0.390670 2.3:-55148954 MS.gene67315:CDS
TTGATGGAAGTTGGTTCAAA+TGG 0.391634 2.3:-55148938 MS.gene67315:CDS
GCAAAGAAAATTCTGTTTGA+TGG 0.394048 2.3:-55144629 MS.gene67315:CDS
AGAGTAGGAGCGCAATTTAT+CGG 0.402948 2.3:-55147940 MS.gene67315:CDS
TTGCATTTGCAGGCTAGGTT+AGG 0.405544 2.3:-55142647 MS.gene67315:intron
ATATTATAAATGGAACAAAA+TGG 0.406958 2.3:-55143766 MS.gene67315:CDS
CCTGTGGAACTTATGGATTC+CGG 0.415876 2.3:-55145704 MS.gene67315:intron
TAATGTGGATTCCATCGGTC+TGG 0.419244 2.3:-55147882 MS.gene67315:CDS
CGAGCGAGGCATGCAACTAA+TGG 0.422857 2.3:-55142582 MS.gene67315:CDS
CACCACTGTATGAGACTAAT+AGG 0.424060 2.3:-55142611 MS.gene67315:CDS
TTCAGGAGCAACAGCAGGCT+TGG 0.424584 2.3:-55147429 MS.gene67315:CDS
CAGTCCAACGTGCTTCTGAT+TGG 0.429428 2.3:+55145773 None:intergenic
TGATTCAAATGACTTGTTGT+TGG 0.430057 2.3:-55144585 MS.gene67315:CDS
ACAACAATCAATGATCTTAG+TGG 0.430286 2.3:-55143568 MS.gene67315:CDS
TATATGCAACATCACACATT+TGG 0.430300 2.3:+55147047 None:intergenic
CTTGAGGGGAAGATTAGGTC+TGG 0.430876 2.3:-55144295 MS.gene67315:CDS
TTCTAATTCTAACTTGCCTA+TGG 0.431568 2.3:+55142049 None:intergenic
GTACCCAAGTGGACTTCGTC+CGG 0.432695 2.3:+55142071 None:intergenic
CCATCGGTCTGGGAAATTAC+GGG 0.432973 2.3:-55147871 MS.gene67315:CDS
GCAACAGCAGGCTTGGTTCA+TGG 0.436348 2.3:-55147422 MS.gene67315:CDS
GCTTGCAGGTTTACCCTCAC+TGG 0.438465 2.3:+55147511 None:intergenic
TTTATAAAACTCCTCTTCCA+TGG 0.440772 2.3:+55145801 None:intergenic
AGTATAAGAATTCTGCATCT+TGG 0.441984 2.3:+55143722 None:intergenic
TAGAACTTCCATTCAGCAAC+AGG 0.442596 2.3:+55146579 None:intergenic
GCTAGAGAAGACTAGGTTGC+TGG 0.444153 2.3:-55142386 MS.gene67315:CDS
AAGCAGAAAACTTTAGGAAC+TGG 0.449030 2.3:+55148312 None:intergenic
ACCTCCATGTTACCTGTGTC+AGG 0.449304 2.3:+55144473 None:intergenic
GAGTAATTGGCATACTTGAC+TGG 0.449570 2.3:-55147090 MS.gene67315:CDS
CCAACATACTTGATGGAAGT+TGG 0.451755 2.3:-55148947 MS.gene67315:CDS
GGCTTTGATGATGCGCCTCA+TGG 0.454474 2.3:-55143498 MS.gene67315:CDS
AGTCCAACGTGCTTCTGATT+GGG 0.457612 2.3:+55145774 None:intergenic
TTCACCCATTAAGATATTTG+TGG 0.461523 2.3:+55143437 None:intergenic
GAAGACTAGGTTGCTGGTGT+TGG 0.467649 2.3:-55142380 MS.gene67315:CDS
TCAATATAGGGTAATGCATC+TGG 0.470068 2.3:-55146168 MS.gene67315:intron
ATAGAGAACAAATGCTAGAA+TGG 0.470466 2.3:-55144330 MS.gene67315:CDS
AGGTTTACCCTCACTGGTTG+AGG 0.470831 2.3:+55147517 None:intergenic
TGGCTTATTCCTTTGCTTGA+GGG 0.472384 2.3:-55144310 MS.gene67315:CDS
TGAAATGAGTTGGAGAGAGA+GGG 0.475918 2.3:+55149116 None:intergenic
AAGGTTTGCTCCTAGTCAAA+AGG 0.476231 2.3:-55145875 MS.gene67315:CDS
AAAGCCTGCTGGGAAATTGT+TGG 0.476906 2.3:-55148885 MS.gene67315:CDS
TGGTCTCATCGAAGCTGCTT+GGG 0.478454 2.3:-55146109 MS.gene67315:CDS
TGCTGGAGTGTATAATAGAT+GGG 0.478697 2.3:-55146520 MS.gene67315:CDS
CGAGGCGCTTCAATTTATGC+TGG 0.479069 2.3:-55146537 MS.gene67315:CDS
GAGTAGGAGCGCAATTTATC+GGG 0.479674 2.3:-55147939 MS.gene67315:CDS
ATGGTCTCATCGAAGCTGCT+TGG 0.480972 2.3:-55146110 MS.gene67315:CDS
AGCTGCTCCATGCACTTGAA+TGG 0.481994 2.3:+55142163 None:intergenic
CGGCCCGGACGAAGTCCACT+TGG 0.482405 2.3:-55142075 MS.gene67315:CDS
TGGTATTATTGCCTAGAGCC+TGG 0.483040 2.3:+55148340 None:intergenic
ATTCAAGTGCATGGAGCAGC+TGG 0.485086 2.3:-55142161 MS.gene67315:CDS
CCTGCCACAAATATCTTAAT+GGG 0.485118 2.3:-55143441 MS.gene67315:CDS
CAAAGAAAATTCTGTTTGAT+GGG 0.486008 2.3:-55144628 MS.gene67315:CDS
TACACAGAAGTACTTGCTAA+TGG 0.487331 2.3:-55146129 MS.gene67315:CDS
CCCATTAAGATATTTGTGGC+AGG 0.490072 2.3:+55143441 None:intergenic
CCAACTTCCATCAAGTATGT+TGG 0.490664 2.3:+55148947 None:intergenic
CATTAGTTGCATGCCTCGCT+CGG 0.492548 2.3:+55142583 None:intergenic
TTGCAGGCTAGGTTAGGTCC+TGG 0.494387 2.3:-55142641 MS.gene67315:intron
AGTGTATAATAGATGGGTTA+AGG 0.495967 2.3:-55146514 MS.gene67315:intron
TAAATTGCGCTCCTACTCTC+TGG 0.499281 2.3:+55147944 None:intergenic
GGCTTATTCCTTTGCTTGAG+GGG 0.499531 2.3:-55144309 MS.gene67315:CDS
CTTCAACTTACAGGTTCTCC+AGG 0.499629 2.3:-55148358 MS.gene67315:intron
TATATTATGGAGTATTTGGA+AGG 0.501609 2.3:-55148255 MS.gene67315:CDS
AATGTGGATTCCATCGGTCT+GGG 0.505364 2.3:-55147881 MS.gene67315:CDS
GCACCACAATTAAATATTTG+TGG 0.508320 2.3:+55144497 None:intergenic
CGAATGAATCTTACCTCTGT+GGG 0.508934 2.3:+55147368 None:intergenic
AACTTTAGGAACTGGAACAT+TGG 0.509463 2.3:+55148320 None:intergenic
TTATAAAACTCCTCTTCCAT+GGG 0.509848 2.3:+55145802 None:intergenic
TTCATTACATTCTGCTAATG+TGG 0.509912 2.3:-55147897 MS.gene67315:CDS
TGGGAGAGATTGAAATGAGT+TGG 0.509941 2.3:+55149106 None:intergenic
TAGTCTTCTCTAGCTCGATT+CGG 0.512035 2.3:+55142395 None:intergenic
GACTGGGAACTATCTACCCT+TGG 0.512383 2.3:-55147073 MS.gene67315:CDS
TTACAGGTTCTCCAGGCTCT+AGG 0.512672 2.3:-55148351 MS.gene67315:intron
AGCAGAATGTAATGAAGCTA+AGG 0.514604 2.3:+55147904 None:intergenic
GGGAAAATGATTGCTCAGCA+TGG 0.516122 2.3:-55142530 MS.gene67315:CDS
GCATCAGAAGATGCAATTTG+CGG 0.517746 2.3:+55144256 None:intergenic
TGGTTGAAATGGTGAGAGTC+AGG 0.518209 2.3:+55149181 None:intergenic
GATTCTTCAGGAGCAACAGC+AGG 0.518250 2.3:-55147434 MS.gene67315:CDS
GAGAGGGAAGCCAGAAACGT+TGG 0.518459 2.3:+55149132 None:intergenic
TCACATAAAGAGACCTTTGA+CGG 0.521909 2.3:-55143526 MS.gene67315:CDS
GAAGCCAACAATTTCCCAGC+AGG 0.522814 2.3:+55148881 None:intergenic
AAAGAGCGTACAAGAAGGTA+TGG 0.523231 2.3:-55146763 MS.gene67315:CDS
ATATTGAGTGTTCCATCAAA+AGG 0.525028 2.3:-55144228 MS.gene67315:intron
TTTGAGAATTGCAGACGGCC+CGG 0.525718 2.3:-55142090 MS.gene67315:CDS
GGAGAGAGTCATGGTTGAAA+TGG 0.525974 2.3:+55149170 None:intergenic
ATGGCTTATTCCTTTGCTTG+AGG 0.526145 2.3:-55144311 MS.gene67315:CDS
AACTCATTTCAATCTCTCCC+AGG 0.527848 2.3:-55149104 MS.gene67315:intron
GCGGACCAGCTTGATCGGTA+TGG 0.531048 2.3:-55142352 MS.gene67315:CDS
ATCTTAATGGGTGAAGGACG+TGG 0.532330 2.3:-55143429 MS.gene67315:CDS
CACTGTCCTAGCTCATCTGT+GGG 0.533203 2.3:-55142126 MS.gene67315:CDS
AGTGCAAGACCTCCCAAATG+AGG 0.534890 2.3:-55145899 MS.gene67315:CDS
AATTGTGGTGCGCCTGACAC+AGG 0.535468 2.3:-55144485 MS.gene67315:CDS
ATGCAGAATTCTTATACTCA+TGG 0.544050 2.3:-55143717 MS.gene67315:intron
ACACTGTCCTAGCTCATCTG+TGG 0.544483 2.3:-55142127 MS.gene67315:CDS
GCTTTGATGATGCGCCTCAT+GGG 0.546380 2.3:-55143497 MS.gene67315:CDS
TCAAAGCCAAACACCGTCAA+AGG 0.546540 2.3:+55143513 None:intergenic
TGATGTTGCATATATCTGTA+TGG 0.546840 2.3:-55147038 MS.gene67315:intron
TTATGGAGTATTTGGAAGGA+CGG 0.547072 2.3:-55148251 MS.gene67315:CDS
TAATGATTATTGCAAAAGAC+AGG 0.550777 2.3:-55147843 MS.gene67315:intron
ACAAATATCTTAATGGGTGA+AGG 0.550800 2.3:-55143435 MS.gene67315:CDS
AATGGTGTTCCAATAACAGT+TGG 0.555057 2.3:+55148279 None:intergenic
GGATACCTTTGTGAGTTCAT+GGG 0.560667 2.3:-55144536 MS.gene67315:CDS
AGGGATAATTGCAATGGCTA+AGG 0.561079 2.3:-55142314 MS.gene67315:intron
TGTTTCCATACCGATCAAGC+TGG 0.562002 2.3:+55142347 None:intergenic
GAAAATGGCCTGTTGCTGAA+TGG 0.562642 2.3:-55146587 MS.gene67315:CDS
TACCCAAGTGGACTTCGTCC+GGG 0.563610 2.3:+55142072 None:intergenic
GGAACGTTCTAGATTACCGC+AGG 0.564074 2.3:-55146742 MS.gene67315:CDS
ATGGTGGACTAGTGGTGCTA+TGG 0.566565 2.3:-55143747 MS.gene67315:CDS
GTTGCTGGTGTTGGAAGCCG+CGG 0.567966 2.3:-55142371 MS.gene67315:CDS
CATCACACATTTGGTTACCA+AGG 0.569073 2.3:+55147056 None:intergenic
CCCGTAATTTCCCAGACCGA+TGG 0.570449 2.3:+55147871 None:intergenic
CAGCATAAATTGAAGCGCCT+CGG 0.570907 2.3:+55146538 None:intergenic
AAGCCGCGGACCAGCTTGAT+CGG 0.571761 2.3:-55142357 MS.gene67315:CDS
CGTTGGAAGAACAATAATTG+AGG 0.574358 2.3:+55149149 None:intergenic
CCGGAATCCATAAGTTCCAC+AGG 0.575773 2.3:+55145704 None:intergenic
GAAGTCCACTTGGGTACCAT+AGG 0.576126 2.3:-55142065 MS.gene67315:CDS
ACACATATACCCCATGGAAG+AGG 0.576431 2.3:-55145812 MS.gene67315:CDS
CAGCTGCCCACAGATGAGCT+AGG 0.576896 2.3:+55142120 None:intergenic
ATTTGTTTCAGATTTGGCCA+AGG 0.577448 2.3:-55142504 MS.gene67315:intron
CTAATCTTCCCCTCAAGCAA+AGG 0.578251 2.3:+55144301 None:intergenic
CTAATAGGCGCTGCCGAGCG+AGG 0.578942 2.3:-55142596 MS.gene67315:CDS
AAGGAGTTAGCAAAGAAAGA+AGG 0.579246 2.3:-55145727 MS.gene67315:CDS
GCTCCTGAAGAATCTTCAGA+AGG 0.581121 2.3:+55147443 None:intergenic
AGGGTGTGGCACCAGAGAGT+AGG 0.581394 2.3:-55147955 MS.gene67315:CDS
TGCGCCTGACACAGGTAACA+TGG 0.584644 2.3:-55144477 MS.gene67315:CDS
GACATGGCCATTCAAGTGCA+TGG 0.585587 2.3:-55142170 MS.gene67315:CDS
AGGCTAGGTTAGGTCCTGGA+AGG 0.589143 2.3:-55142637 MS.gene67315:CDS
ATCACACATTTGGTTACCAA+GGG 0.589581 2.3:+55147057 None:intergenic
GCAGGTTGATAGTGCTGCGA+GGG 0.590311 2.3:-55144651 MS.gene67315:intron
GCTCCACAAATATTTAATTG+TGG 0.591755 2.3:-55144500 MS.gene67315:CDS
GAATCGAGCTAGAGAAGACT+AGG 0.591766 2.3:-55142393 MS.gene67315:CDS
CGCCTATTAGTCTCATACAG+TGG 0.598100 2.3:+55142609 None:intergenic
CTACCTGAAGGAGGATGCTG+AGG 0.598252 2.3:+55146060 None:intergenic
ATTGTTATATAGTTTGGACA+TGG 0.603937 2.3:-55148980 MS.gene67315:intron
AGCTCGAGGGATAATTGCAA+TGG 0.605648 2.3:-55142320 MS.gene67315:CDS
CCGAATGAATCTTACCTCTG+TGG 0.608608 2.3:+55147367 None:intergenic
GTGCAAGACCTCCCAAATGA+GGG 0.609469 2.3:-55145898 MS.gene67315:CDS
TCTGCTAATGTGGATTCCAT+CGG 0.611029 2.3:-55147887 MS.gene67315:CDS
TATGTCTCCTCAACCAGTGA+GGG 0.612509 2.3:-55147524 MS.gene67315:CDS
ATTCAAATGACTTGTTGTTG+GGG 0.618044 2.3:-55144583 MS.gene67315:CDS
AGTAATTGGCATACTTGACT+GGG 0.621463 2.3:-55147089 MS.gene67315:CDS
TTATAAATGGAACAAAATGG+TGG 0.623779 2.3:-55143763 MS.gene67315:CDS
GGTCTCTTTATGTGAACACC+AGG 0.624753 2.3:+55143534 None:intergenic
CTCCTGAAGAATCTTCAGAA+GGG 0.625254 2.3:+55147444 None:intergenic
ACTACTTCTGCATGCCCATG+AGG 0.626044 2.3:+55143483 None:intergenic
CAAACCTTCCCTCATTTGGG+AGG 0.630413 2.3:+55145890 None:intergenic
GGCGAAAAGAGCGTACAAGA+AGG 0.635332 2.3:-55146768 MS.gene67315:CDS
TTAGTGGATACTCAGACACC+TGG 0.636037 2.3:-55143552 MS.gene67315:CDS
TTCAAATGACTTGTTGTTGG+GGG 0.636160 2.3:-55144582 MS.gene67315:CDS
ATACCGATCAAGCTGGTCCG+CGG 0.638981 2.3:+55142354 None:intergenic
GGCCCGGACGAAGTCCACTT+GGG 0.641188 2.3:-55142074 MS.gene67315:CDS
GGGATTGATGGTACTTGACA+TGG 0.644700 2.3:-55142186 MS.gene67315:CDS
AATAATTGAGGAGAGAGTCA+TGG 0.646534 2.3:+55149161 None:intergenic
TAGCAAAGAAAGAAGGCCTG+TGG 0.647630 2.3:-55145720 MS.gene67315:CDS
GGAACAAAATGGTGGACTAG+TGG 0.652728 2.3:-55143755 MS.gene67315:CDS
TTGGTATAGCTACCTGAAGG+AGG 0.653502 2.3:+55146051 None:intergenic
GGAGGAACACATATACCCCA+TGG 0.653714 2.3:-55145818 MS.gene67315:CDS
TTTCCCAATCAGAAGCACGT+TGG 0.660462 2.3:-55145777 MS.gene67315:CDS
AAGACCTCCCAAATGAGGGA+AGG 0.664334 2.3:-55145894 MS.gene67315:CDS
TTGGACTGTTCACCCAGCAG+AGG 0.664856 2.3:-55145758 MS.gene67315:CDS
ATATAGGGTAATGCATCTGG+TGG 0.665132 2.3:-55146165 MS.gene67315:intron
AGAACTTTGAGAATTGCAGA+CGG 0.671470 2.3:-55142095 MS.gene67315:CDS
TAAAATAATTAAGTTCATGG+AGG 0.687419 2.3:-55145836 MS.gene67315:CDS
ATATGTCTCCTCAACCAGTG+AGG 0.688102 2.3:-55147525 MS.gene67315:CDS
AATGACCCATGAACTCACAA+AGG 0.692236 2.3:+55144531 None:intergenic
TGCAGGTTGATAGTGCTGCG+AGG 0.692729 2.3:-55144652 MS.gene67315:intron
TATAAAACTCCTCTTCCATG+GGG 0.694997 2.3:+55145803 None:intergenic
ACTTGCCTATGGTACCCAAG+TGG 0.703994 2.3:+55142060 None:intergenic
GAACGTTCTAGATTACCGCA+GGG 0.716493 2.3:-55146741 MS.gene67315:CDS
TCTTGTGTTTCATCCCACAG+AGG 0.753795 2.3:-55147381 MS.gene67315:intron
GGTAGAGAAGGAATTCCCTG+CGG 0.771544 2.3:+55146726 None:intergenic
AAACTGACTTCAATGCAGCG+AGG 0.785252 2.3:-55143596 MS.gene67315:CDS
GCCTGACACAGGTAACATGG+AGG 0.796602 2.3:-55144474 MS.gene67315:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr2.3 gene 55142028 55149218 55142028 ID=MS.gene67315
chr2.3 mRNA 55142028 55149218 55142028 ID=MS.gene67315.t1;Parent=MS.gene67315
chr2.3 exon 55149105 55149218 55149105 ID=MS.gene67315.t1.exon1;Parent=MS.gene67315.t1
chr2.3 CDS 55149105 55149218 55149105 ID=cds.MS.gene67315.t1;Parent=MS.gene67315.t1
chr2.3 exon 55148853 55148990 55148853 ID=MS.gene67315.t1.exon2;Parent=MS.gene67315.t1
chr2.3 CDS 55148853 55148990 55148853 ID=cds.MS.gene67315.t1;Parent=MS.gene67315.t1
chr2.3 exon 55148227 55148367 55148227 ID=MS.gene67315.t1.exon3;Parent=MS.gene67315.t1
chr2.3 CDS 55148227 55148367 55148227 ID=cds.MS.gene67315.t1;Parent=MS.gene67315.t1
chr2.3 exon 55147844 55147975 55147844 ID=MS.gene67315.t1.exon4;Parent=MS.gene67315.t1
chr2.3 CDS 55147844 55147975 55147844 ID=cds.MS.gene67315.t1;Parent=MS.gene67315.t1
chr2.3 exon 55147382 55147567 55147382 ID=MS.gene67315.t1.exon5;Parent=MS.gene67315.t1
chr2.3 CDS 55147382 55147567 55147382 ID=cds.MS.gene67315.t1;Parent=MS.gene67315.t1
chr2.3 exon 55147039 55147116 55147039 ID=MS.gene67315.t1.exon6;Parent=MS.gene67315.t1
chr2.3 CDS 55147039 55147116 55147039 ID=cds.MS.gene67315.t1;Parent=MS.gene67315.t1
chr2.3 exon 55146695 55146808 55146695 ID=MS.gene67315.t1.exon7;Parent=MS.gene67315.t1
chr2.3 CDS 55146695 55146808 55146695 ID=cds.MS.gene67315.t1;Parent=MS.gene67315.t1
chr2.3 exon 55146515 55146613 55146515 ID=MS.gene67315.t1.exon8;Parent=MS.gene67315.t1
chr2.3 CDS 55146515 55146613 55146515 ID=cds.MS.gene67315.t1;Parent=MS.gene67315.t1
chr2.3 exon 55146064 55146181 55146064 ID=MS.gene67315.t1.exon9;Parent=MS.gene67315.t1
chr2.3 CDS 55146064 55146181 55146064 ID=cds.MS.gene67315.t1;Parent=MS.gene67315.t1
chr2.3 exon 55145705 55145940 55145705 ID=MS.gene67315.t1.exon10;Parent=MS.gene67315.t1
chr2.3 CDS 55145705 55145940 55145705 ID=cds.MS.gene67315.t1;Parent=MS.gene67315.t1
chr2.3 exon 55144475 55144669 55144475 ID=MS.gene67315.t1.exon11;Parent=MS.gene67315.t1
chr2.3 CDS 55144475 55144669 55144475 ID=cds.MS.gene67315.t1;Parent=MS.gene67315.t1
chr2.3 exon 55144229 55144371 55144229 ID=MS.gene67315.t1.exon12;Parent=MS.gene67315.t1
chr2.3 CDS 55144229 55144371 55144229 ID=cds.MS.gene67315.t1;Parent=MS.gene67315.t1
chr2.3 exon 55143718 55143802 55143718 ID=MS.gene67315.t1.exon13;Parent=MS.gene67315.t1
chr2.3 CDS 55143718 55143802 55143718 ID=cds.MS.gene67315.t1;Parent=MS.gene67315.t1
chr2.3 exon 55143413 55143622 55143413 ID=MS.gene67315.t1.exon14;Parent=MS.gene67315.t1
chr2.3 CDS 55143413 55143622 55143413 ID=cds.MS.gene67315.t1;Parent=MS.gene67315.t1
chr2.3 exon 55142505 55142657 55142505 ID=MS.gene67315.t1.exon15;Parent=MS.gene67315.t1
chr2.3 CDS 55142505 55142657 55142505 ID=cds.MS.gene67315.t1;Parent=MS.gene67315.t1
chr2.3 exon 55142315 55142419 55142315 ID=MS.gene67315.t1.exon16;Parent=MS.gene67315.t1
chr2.3 CDS 55142315 55142419 55142315 ID=cds.MS.gene67315.t1;Parent=MS.gene67315.t1
chr2.3 exon 55142028 55142225 55142028 ID=MS.gene67315.t1.exon17;Parent=MS.gene67315.t1
chr2.3 CDS 55142028 55142225 55142028 ID=cds.MS.gene67315.t1;Parent=MS.gene67315.t1
Gene Sequence

>MS.gene67315

ATGGCGGGGAATTCACCTGACTCTCACCATTTCAACCATGACTCTCTCCTCAATTATTGTTCTTCCAACGTTTCTGGCTTCCCTCTCTCTCCAACTCATTTCAATCTCTCCCAGGTTCCATTTTTCATTCATTTTTGCATTTTGTATTCATCTGGGTCATCTTCGTTTGCATCAAAATTTGTTCCTTTTGTTTTTGATTTTGTTGGTTTGTTTTGAATTGTTATATAGTTTGGACATGGACAGTCTAATCCAACATACTTGATGGAAGTTGGTTCAAATGGATCCATTGACAAGAAATATGTTCTTAGGAAAAAGCCTGCTGGGAAATTGTTGGCTTCAGCTCATGCTGTTGAAAGAGAGTTTCAGGTTTGTATATTTAATCCTAATCTCTTATGGTATAAGTAAGAGATTCAGGTTTAGAATGATTCAATGATGATTTTTGAATGTTAACCAGTTTTGGATTTGAAAAAGTTGTGGTATAGAATGAGACATGTTTGGATAAACAAATTATTAGTCCCGTATAACATAAATAAGCCTTTGTCGTACAAGTGTTTATGTATAAGCTATTTGAAATTTCTATAACAAAAGGTAAAATAAAGTCAAATTTTTTTATATAAGCTACATGCTATTTTCATAAACTATTTTGACGAGCTTGTGGAAGTAAGCTGAAAAGAACTTATGGACATGCCATAAGCTGTTCCAAATAGTCTTACAAGTGCTAATGTCAGTAGATAAGCTCAAATTAGCCAATCCGAAGAGGCCTGTAACAAATTGATAGATCTTTGAAACTGTGTTAGACTGTTAGTGAGAAAGAAAATTGATTGTTTTCTTTTTTGTCCTTCAACTTACAGGTTCTCCAGGCTCTAGGCAATAATACCAATGTTCCAGTTCCTAAAGTTTTCTGCTTGTGCAATGATCCAACTGTTATTGGAACACCATTTTATATTATGGAGTATTTGGAAGGACGGATATTCATCGATCCCAAATTACCAGTATGGTTTGTTTATATGCATCTTTAGTGTTCTAAACTAAAATTACCGATTGCAGGACTGGATTGTCATCATGGTTTTAAATTGTGGTTGTGGTCGCTGTTTTTTGGGGAACCTAAAATGCAGTCAAAATTGCAGTTGCAATGCCATTGCAGAGATCTCAATCCTTTTGAATTGCAGCTGCAGCTGTGGCTGTGGATCGCAATTGAAAACCATTAGTTTTGTTGTTGAATTGTATTAAATGAATGTGTCAGGGTGTGGCACCAGAGAGTAGGAGCGCAATTTATCGGGAAACTGCTAAAACCTTAGCTTCATTACATTCTGCTAATGTGGATTCCATCGGTCTGGGAAATTACGGGCGACGTAATGATTATTGCAAAAGACAGGTAAGTTCTTTCAGATATGTCTCATTGTTTACGGTCAAGGTTATGTCTTGAAGAAGTTTTTTTTTATCAAATAGATATATTTTATTAGGATAAGGAGAAGTGTCATTTGACTCCTTGATGAACCTTGTATCACTGTATGGATTATAGAAAAACTGAACTCAATTGCATTGAATTTATATAAGCAACAAAAGAAGTGTTAGGTTAGGATCAAATTAATTTTATATTACCAGATACGAACTTGATAGCATTAATGGATTGTTTATTTATTTATTTTAGATTGAGAGATGGGCTAAGCAATATGTCTCCTCAACCAGTGAGGGTAAACCTGCAAGCAATCCAAAAATGTTTGCTTTGATTGATTGGCTACGACATCATATCCCTTCTGAAGATTCTTCAGGAGCAACAGCAGGCTTGGTTCATGGAGATTTTCGCATTGACAATCTTGTGTTTCATCCCACAGAGGTAAGATTCATTCGGTAAAACTATACACTTTACCAAAGTTCCGTGACTGAAAAACTAAGTCCTTTTTCTTTGTTCTGATATTAATGCATACATTTATTTTTCTATCTGGTAATGCTCAAAACCAGAGTATCATAACTATCATGCTAAAGAAACGGAAATTTATGTTGCCATGTGCATAATATTCTGGAGTCTGGACAGTGTTAAGATTAGCATTTTGGAGTTAGAATCCAGCTCTTATGCCTGATGAGTTTTGTTTCTGCTGCAGGATCGAGTAATTGGCATACTTGACTGGGAACTATCTACCCTTGGTAACCAAATGTGTGATGTTGCATATATCTGTATGGTATGTACTATATTTTGACGTTCTGAATCAAGATCTTGGTGCATAAAGATGGATTTGTTACATTGTGTTGTGTAGTTGTTTTGCACCTGATTTTTTGTTTAGATCTTGATAGATATTAATTTCATATATTTTTTTAGTTTGTTAAAATGTTCCTAAAACAGAATCATAGATATATAAATTGTTGGTTAATTGAATTACCAATGTAATTCATGCTTTCTTTTCTTTGACAGTGTTATGTTAAAGATATTGGCGAAAAGAGCGTACAAGAAGGTATGGAACGTTCTAGATTACCGCAGGGAATTCCTTCTCTACCAGAGTTTTTGGCTGAATATTGCTCTCTAGCAGTAAGTGCTGTTACTATATATTTTCAATTTGGAAGAAAATTCCTCTACTAAAGAATTCTAACAATGAGTTTTTGATGCCAGGGAAGAAAATGGCCTGTTGCTGAATGGAAGTTCTATGTTGCCTTTTCTTTTTTCCGAGGCGCTTCAATTTATGCTGGAGTGTATAATAGATGGGTTAAGGTATCCAAACTTGTTAGAGATGCTCTTGTCATTTGAGTTTGGGATTTAGGATCTGTTTAGATAAACAAGTTATTTGAGCATTTATCACATGCTTATGTATAAAGTATTTCTATAACAAAAGATAAAATAAAGTCAAACTGTTTTTATATAATTTAAAAGCTCTTTTTATTAGCTATCCTGAAAATAAGCTGAAATCAGCGTGTAGACTTGTCATAGGTTGTTTTCAAAAGTTCTCTCAGACAGTCCCACAAGTGTTTATGCCAGTAGATAAGCTCAAATAAGGCAATCCAAACATATTCTTAATTATATGTGGCTTCTTTGTGTTCAATATAGGGTAATGCATCTGGTGGTGAGCGTGCTCGTTACACAGAAGTACTTGCTAATGGTCTCATCGAAGCTGCTTGGGAATTTATTGAGCGCAAAGTTGTGCTTCCTCAGCATCCTCCTTCAGGTAGCTATACCAATCGGCTCTCACATTGAGCCACATATATTTTATTGCTGTAACAGAAGCTAATCATATTAGATTATTAGTACTACACTAATATCTGAGGAATTTGAACTTTTAACAAATCAGGTGTAAATGCAAAAGAATTAGTGCAAGACCTCCCAAATGAGGGAAGGTTTGCTCCTAGTCAAAAGGTTTTAGTGCTAAGGAATAAAATAATTAAGTTCATGGAGGAACACATATACCCCATGGAAGAGGAGTTTTATAAACTTTCCCAATCAGAAGCACGTTGGACTGTTCACCCAGCAGAGGAAAAATTGAAGGAGTTAGCAAAGAAAGAAGGCCTGTGGAACTTATGGATTCCGGTATGTATCTATATTCTGCTCTTCTGTGATATATTTTATCTGTGACTTGTTTCAGAAGCTTTTAACATATTTCCATCTGTTTTTGAAATATTACAGCTTCCTCCAAATTATTTAACAATAGGAACACATTTCCTTATCATAGACCTTAGCAATTGGTATACAAGGATTTTCACTGTTTTCTTCTCAAAGTGCACACTATTTTTATTTATTTTTTGGATAAGAAAATGTTAGTGGTTAGTTAGGAGGAGAGGGAATTTGTTAGCAGCATCGTTCGAACCCTGGACTTCCTTCTTAATACTCCTTCAGTGTCCCATCCCAACTCATACGACTAGGCTACACCTTCGGGGACCAAAGTTCACACTATTATTCAAATGTTCAATAATCTGAAACAACATTAGTATTTATGGGCCACTGAGAATGAACTAAACGTGGTGGTTTACAATATGAAGTATTCAACCTTACATAGGGTTCATGCTTTTAGAATGTGTTTATACTTTAAAGAGATTGTTACATAAACATCTTTGGTCAAGCTTTGAGTTTCACATTGAGGTATTATAATGCTTATGTAGAAGTTTCAAAATTGTGGAATCATTACAAGTAGGTTTGGATAAACTTCTCAAGATGCATGCATGGAAAAAGACCTATTAAAAGAATCTTGTGGTAACCATCGATTTTAAACAAATTCCCATGTGAGTTGAAATTAGCCGTTGCATCTCAAATTTGCAAAAGCCCATTCATTTAACTTTTCTATGAACATCGATAAGTTTGTAAAGACTTCTCCATAACTGGAGAACCATAGACACAAGTTAACTAAGATGTTGCTATTTGCTAGAAACTAATCTAAACTTTAACTTATAGGTTGAAATGGTAGGGCATATTTAGATAGAATAAAATATAGGCAGAGAGAAGATGATAATCTTATGAGGACAATATATTGATACCACTTATAATAATGTGAAACAAAATACTAAATGTTCTCTGTTTGATATTATGTTTTTAGACTAATCTTGTGAATGTGTATTTGCTTTTATGCAGGTTGATAGTGCTGCGAGGGCAAAGAAAATTCTGTTTGATGGGAGCAATAATAATCTCTCTACTGATTCAAATGACTTGTTGTTGGGGGCGGGTCTAACAAATCTTGAATATGGATACCTTTGTGAGTTCATGGGTCATTCTCTTTGGGCTCCACAAATATTTAATTGTGGTGCGCCTGACACAGGTAACATGGAGGTAAGATGATATTATAGGTTTGCAAGGTTAATCAAATTTAACACTTTCTCTATCATCATTACATTTGTGTTCGATAAGGGTGTAATATAGTCTTGCATTTTAGGTTTTATTGCGCAACGGAAATAGAGAACAAATGCTAGAATGGCTTATTCCTTTGCTTGAGGGGAAGATTAGGTCTGGATTTGCTATGACAGAACCGCAAATTGCATCTTCTGATGCAACCAATATTGAGTGTTCCATCAAAAGGTAGAATTATCTATAATCTTGAAGCAATACATGTGCATGTTCTTTCCATTCAGCTGATTGAGGGCCAGTATTAATTGAATCATTTGAGTTTATCTACTGACAGAACCACTTGTGAGACTATTTAAGAGAGCTTATGACATGTCTATAAGTTGCTTTCAACTTATTTTCATTAGTTCTCCAGGATAACTTATGAAAACAGCTTATTGCTTTGATGAAAATAATTTGACTGTAGTTTATCTCTTGTTATAGAAATAGCTCATATATATATATATACTTATATGATAAGTGCTTATGCTATAAGCGCTTCATTAAGCTGTTTATCTAAACAGAACCTTAAGGGTGTTGAGTTTAACTTCTCGATAGAAGGCAAATAGACATTTATGAAGCGATGAACTACTTATTTTCTTAATTTTTCTCTTTTCACAGGCAAGGAGATTCATATATTATAAATGGAACAAAATGGTGGACTAGTGGTGCTATGGATCCAAGATGCAGAATTCTTATACTCATGGTAAATATTTGGTTAAAAGTTATTGCGTTAAGTGTCAATATGCTATTTTATTTCAATAGAGATCAGAGAGTAATTGATCAAGAACATGGGCACAGGGGAAAACTGACTTCAATGCAGCGAGGCATAAACAACAATCAATGATCTTAGTGGATACTCAGACACCTGGTGTTCACATAAAGAGACCTTTGACGGTGTTTGGCTTTGATGATGCGCCTCATGGGCATGCAGAAGTAGTATTTGAGAATGTTCGTGTGCCTGCCACAAATATCTTAATGGGTGAAGGACGTGGATTCGAGATCGCTCAAGTAAGTTGAAAAACATTTCTTTTACTTTAAGAATTAGGACATGATGTGGACTCAAATGGAGTTATCCACAAAAGTTGTAGGATTAGTATTTTAGTAATAGAGATAGGAAAAGGAATACTCAAAATAATAAAATTATATTCATATTGAAGTGTTTGATGTTATAAAAAAAAAGAGTATTAAAAAAAAGAGTATTAATCTTGTTTATACTAATATTGGACTCTCAATCAAATTCAATAATCAAATAAGTCGTGATATATAAGGAAGAGCATAGATCAAATTACACTGGTGTAACACTTAGGAAATGTTACATACACACTCAATAACTTTTTATTGGATACATATTTTACGAAATTCACCGTTTGATTGAAAGTTTATATCATATATAGATAATCTCTAAATCAATCTTAAGTAAACAAAATATAATCAGGATTGAAAGTTTAACCCCTCATTTATAAGGAAAATATGTAAACCAATCAATCTTAAGTGATAAGCTATGAAACTCTAAGATACAATCATGATTTTATATGATATATATTATGTTTCAAATAATCTAAAACAGCCTCAACTTTCATCTGTCAATTTCTCCCATGGCTTAAAGAGTTAAATGAATTTTCAATCACTTATCAATGATAGTTTGAATGTTTTCTACTAGGAGTTACATGTTTATGCAAATGACGTATATCTTGTATTGTTTGAGATACTTGCTGAAGTACCAAAAATCATATTTTTCATCTTTTGCCGACTTGCATTTGCAGGCTAGGTTAGGTCCTGGAAGGCTGCACCACTGTATGAGACTAATAGGCGCTGCCGAGCGAGGCATGCAACTAATGGCTCACAGAGCTCTTAGTAGAAAAGCTTTTGGGAAAATGATTGCTCAGCATGGCTCATTTGTTTCAGATTTGGCCAAGGTATTAGAGTTGAGCAAGTCAAAAATAAAAATATATTTCAATTTCCCTTTTTTGATCTTTGCTTACTAAGCTATCGTTTGTTCAGTGCCGAATCGAGCTAGAGAAGACTAGGTTGCTGGTGTTGGAAGCCGCGGACCAGCTTGATCGGTATGGAAACAAAAAAGCTCGAGGGATAATTGCAATGGCTAAGGTATACTCTTGTTCTAATCTTCTGTTGCTGTCGCTTCACCCATGATAATTTTCTTTCAAATCATCACTATGGCTGGTCTTGGAGTGTAGGTAGCTGCGCCAAAAATGGGATTGATGGTACTTGACATGGCCATTCAAGTGCATGGAGCAGCTGGTGTATCATCTGACACTGTCCTAGCTCATCTGTGGGCAGCTGCAAGAACTTTGAGAATTGCAGACGGCCCGGACGAAGTCCACTTGGGTACCATAGGCAAGTTAGAATTAGAAATACAAAGAGCCAAGCTTTGA
Protein sequence

>MS.gene67315.t1

MAGNSPDSHHFNHDSLLNYCSSNVSGFPLSPTHFNLSQFGHGQSNPTYLMEVGSNGSIDKKYVLRKKPAGKLLASAHAVEREFQVLQALGNNTNVPVPKVFCLCNDPTVIGTPFYIMEYLEGRIFIDPKLPGVAPESRSAIYRETAKTLASLHSANVDSIGLGNYGRRNDYCKRQIERWAKQYVSSTSEGKPASNPKMFALIDWLRHHIPSEDSSGATAGLVHGDFRIDNLVFHPTEDRVIGILDWELSTLGNQMCDVAYICMCYVKDIGEKSVQEGMERSRLPQGIPSLPEFLAEYCSLAGRKWPVAEWKFYVAFSFFRGASIYAGVYNRWVKGNASGGERARYTEVLANGLIEAAWEFIERKVVLPQHPPSGVNAKELVQDLPNEGRFAPSQKVLVLRNKIIKFMEEHIYPMEEEFYKLSQSEARWTVHPAEEKLKELAKKEGLWNLWIPVDSAARAKKILFDGSNNNLSTDSNDLLLGAGLTNLEYGYLCEFMGHSLWAPQIFNCGAPDTGNMEVLLRNGNREQMLEWLIPLLEGKIRSGFAMTEPQIASSDATNIECSIKRQGDSYIINGTKWWTSGAMDPRCRILILMGKTDFNAARHKQQSMILVDTQTPGVHIKRPLTVFGFDDAPHGHAEVVFENVRVPATNILMGEGRGFEIAQARLGPGRLHHCMRLIGAAERGMQLMAHRALSRKAFGKMIAQHGSFVSDLAKCRIELEKTRLLVLEAADQLDRYGNKKARGIIAMAKVAAPKMGLMVLDMAIQVHGAAGVSSDTVLAHLWAAARTLRIADGPDEVHLGTIGKLELEIQRAKL