Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051154.t1 | RHN40144.1 | 97 | 330 | 9 | 1 | 1 | 329 | 1 | 330 | 2.50E-182 | 647.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051154.t1 | Q42948 | 66.1 | 336 | 103 | 2 | 5 | 329 | 24 | 359 | 2.5e-130 | 466.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051154.t1 | A0A396GKP7 | 97.0 | 330 | 9 | 1 | 1 | 329 | 1 | 330 | 1.8e-182 | 647.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04920 | MS.gene051154 | 0.812738 | 3.65E-51 | -1.69E-46 |
| MS.gene051154 | MS.gene051699 | 0.835573 | 1.55E-56 | -1.69E-46 |
| MS.gene051154 | MS.gene055148 | 0.80308 | 4.13E-49 | -1.69E-46 |
| MS.gene051154 | MS.gene055150 | 0.810772 | 9.76E-51 | -1.69E-46 |
| MS.gene051154 | MS.gene058159 | 0.801712 | 7.91E-49 | -1.69E-46 |
| MS.gene051154 | MS.gene05952 | 0.823887 | 1.09E-53 | -1.69E-46 |
| MS.gene051154 | MS.gene062327 | 0.805349 | 1.39E-49 | -1.69E-46 |
| MS.gene051154 | MS.gene064969 | 0.814535 | 1.47E-51 | -1.69E-46 |
| MS.gene051154 | MS.gene068028 | 0.805838 | 1.10E-49 | -1.69E-46 |
| MS.gene051154 | MS.gene068941 | 0.828288 | 9.77E-55 | -1.69E-46 |
| MS.gene051154 | MS.gene073428 | 0.806037 | 9.99E-50 | -1.69E-46 |
| MS.gene051154 | MS.gene07450 | 0.806699 | 7.25E-50 | -1.69E-46 |
| MS.gene051154 | MS.gene22992 | -0.804047 | 2.61E-49 | -1.69E-46 |
| MS.gene051154 | MS.gene23695 | 0.83571 | 1.43E-56 | -1.69E-46 |
| MS.gene051154 | MS.gene27204 | 0.84999 | 2.27E-60 | -1.69E-46 |
| MS.gene051154 | MS.gene36100 | 0.838394 | 2.95E-57 | -1.69E-46 |
| MS.gene051154 | MS.gene37412 | 0.825153 | 5.47E-54 | -1.69E-46 |
| MS.gene051154 | MS.gene38207 | 0.822731 | 2.02E-53 | -1.69E-46 |
| MS.gene051154 | MS.gene38368 | 0.803693 | 3.09E-49 | -1.69E-46 |
| MS.gene051154 | MS.gene39037 | 0.846531 | 2.05E-59 | -1.69E-46 |
| MS.gene051154 | MS.gene44909 | 0.832601 | 8.61E-56 | -1.69E-46 |
| MS.gene051154 | MS.gene46390 | 0.824763 | 6.77E-54 | -1.69E-46 |
| MS.gene051154 | MS.gene53391 | 0.824361 | 8.41E-54 | -1.69E-46 |
| MS.gene051154 | MS.gene53612 | 0.800923 | 1.15E-48 | -1.69E-46 |
| MS.gene051154 | MS.gene55699 | 0.823455 | 1.37E-53 | -1.69E-46 |
| MS.gene051154 | MS.gene55707 | 0.821213 | 4.55E-53 | -1.69E-46 |
| MS.gene051154 | MS.gene57028 | 0.816029 | 6.83E-52 | -1.69E-46 |
| MS.gene051154 | MS.gene57128 | 0.805296 | 1.43E-49 | -1.69E-46 |
| MS.gene051154 | MS.gene59616 | 0.823532 | 1.32E-53 | -1.69E-46 |
| MS.gene051154 | MS.gene59697 | 0.814045 | 1.88E-51 | -1.69E-46 |
| MS.gene051154 | MS.gene60384 | 0.835452 | 1.66E-56 | -1.69E-46 |
| MS.gene051154 | MS.gene61254 | 0.819226 | 1.30E-52 | -1.69E-46 |
| MS.gene051154 | MS.gene62676 | 0.835434 | 1.68E-56 | -1.69E-46 |
| MS.gene051154 | MS.gene62677 | 0.835637 | 1.49E-56 | -1.69E-46 |
| MS.gene051154 | MS.gene63430 | 0.800294 | 1.54E-48 | -1.69E-46 |
| MS.gene051154 | MS.gene64284 | 0.812727 | 3.67E-51 | -1.69E-46 |
| MS.gene051154 | MS.gene67315 | 0.80607 | 9.83E-50 | -1.69E-46 |
| MS.gene051154 | MS.gene70154 | 0.832255 | 1.05E-55 | -1.69E-46 |
| MS.gene051154 | MS.gene72379 | 0.813151 | 2.96E-51 | -1.69E-46 |
| MS.gene051154 | MS.gene73678 | 0.813596 | 2.36E-51 | -1.69E-46 |
| MS.gene051154 | MS.gene74982 | 0.819837 | 9.42E-53 | -1.69E-46 |
| MS.gene051154 | MS.gene83022 | 0.806613 | 7.56E-50 | -1.69E-46 |
| MS.gene051154 | MS.gene86038 | 0.802047 | 6.75E-49 | -1.69E-46 |
| MS.gene051154 | MS.gene88351 | 0.807961 | 3.91E-50 | -1.69E-46 |
| MS.gene051154 | MS.gene88658 | 0.811136 | 8.14E-51 | -1.69E-46 |
| MS.gene051154 | MS.gene89254 | 0.823091 | 1.67E-53 | -1.69E-46 |
| MS.gene051154 | MS.gene89255 | 0.801843 | 7.44E-49 | -1.69E-46 |
| MS.gene051154 | MS.gene98636 | 0.802699 | 4.96E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051154.t1 | MTR_8g036020 | 95.732 | 328 | 13 | 1 | 3 | 329 | 1 | 328 | 0.0 | 642 |
| MS.gene051154.t1 | MTR_8g036035 | 85.359 | 362 | 20 | 2 | 1 | 329 | 1 | 362 | 0.0 | 619 |
| MS.gene051154.t1 | MTR_8g036040 | 76.699 | 309 | 71 | 1 | 22 | 329 | 50 | 358 | 0.0 | 510 |
| MS.gene051154.t1 | MTR_1g088775 | 70.645 | 310 | 90 | 1 | 21 | 329 | 57 | 366 | 1.05e-165 | 466 |
| MS.gene051154.t1 | MTR_7g075090 | 69.677 | 310 | 93 | 1 | 21 | 329 | 57 | 366 | 2.29e-163 | 460 |
| MS.gene051154.t1 | MTR_8g036050 | 70.550 | 309 | 85 | 2 | 22 | 329 | 4 | 307 | 9.23e-161 | 451 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051154.t1 | AT2G45440 | 68.153 | 314 | 99 | 1 | 17 | 329 | 52 | 365 | 5.43e-163 | 459 |
| MS.gene051154.t1 | AT3G60880 | 67.742 | 310 | 99 | 1 | 21 | 329 | 56 | 365 | 1.82e-161 | 455 |
| MS.gene051154.t1 | AT3G60880 | 67.742 | 310 | 99 | 1 | 21 | 329 | 55 | 364 | 2.21e-161 | 455 |
Find 89 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTCACACCAACAAAATT+TGG | 0.159213 | 8.2:-63284953 | None:intergenic |
| GGCGACAAAGTTAAAGTTAT+TGG | 0.161210 | 8.2:+63284698 | MS.gene051154:CDS |
| AAGGGTAGGGTTTGTGAATT+TGG | 0.194321 | 8.2:+63285291 | MS.gene051154:CDS |
| GTTCATCCCATGTCATTAAT+TGG | 0.198004 | 8.2:-63284640 | None:intergenic |
| TCCTAGTGTAATTGAAATAT+TGG | 0.255034 | 8.2:+63284922 | MS.gene051154:CDS |
| TCAATCTGTTGCAAGCAATT+TGG | 0.279572 | 8.2:+63285084 | MS.gene051154:CDS |
| AGCTTATGACTTTGTTTGAT+TGG | 0.288548 | 8.2:+63285164 | MS.gene051154:CDS |
| GTTGCAAGCAATTTGGTTCC+AGG | 0.320740 | 8.2:+63285091 | MS.gene051154:CDS |
| GTTGAAGGTATTCTTGTTGC+TGG | 0.326426 | 8.2:+63284602 | MS.gene051154:CDS |
| CACAATCCCATCTAGCTTCA+TGG | 0.328251 | 8.2:-63285048 | None:intergenic |
| GGTACATTGTATATGATGAT+AGG | 0.356794 | 8.2:-63284875 | None:intergenic |
| ATTCTTGTTGCTGGCTCAAC+TGG | 0.359387 | 8.2:+63284611 | MS.gene051154:CDS |
| GAAAGGTAAAACCGGTGAAT+TGG | 0.363505 | 8.2:-63283368 | None:intergenic |
| TTAATGAGGGAACTCATGTT+TGG | 0.364097 | 8.2:+63285115 | MS.gene051154:CDS |
| ACTTAAGCCATGAAGCTAGA+TGG | 0.366550 | 8.2:+63285041 | MS.gene051154:CDS |
| CTACCCTTTGTTCCAAAGTA+AGG | 0.368670 | 8.2:-63285276 | None:intergenic |
| AATACTGCTCTTGCTCAACT+TGG | 0.370399 | 8.2:+63285217 | MS.gene051154:CDS |
| CTTCATATAAACCCTTACTA+TGG | 0.380177 | 8.2:+63284797 | MS.gene051154:CDS |
| TAATGAGGGAACTCATGTTT+GGG | 0.380842 | 8.2:+63285116 | MS.gene051154:CDS |
| GTGAAAATGTACACAGATAA+AGG | 0.383039 | 8.2:+63284995 | MS.gene051154:CDS |
| GCTCACACAGTTAATTGTTT+CGG | 0.387170 | 8.2:+63284677 | MS.gene051154:CDS |
| TGTGAATTTGGTGAAGGAAA+TGG | 0.399427 | 8.2:+63285303 | MS.gene051154:CDS |
| TATAATAGTTTGCTTCCTAT+AGG | 0.400037 | 8.2:+63284851 | MS.gene051154:CDS |
| TCCATATGTACCCCTTACTT+TGG | 0.426197 | 8.2:+63285264 | MS.gene051154:CDS |
| ATACTGCTCTTGCTCAACTT+GGG | 0.427623 | 8.2:+63285218 | MS.gene051154:CDS |
| GTGAATTTGGTGAAGGAAAT+GGG | 0.434090 | 8.2:+63285304 | MS.gene051154:CDS |
| AAAGGTAAAACCGGTGAATT+GGG | 0.443005 | 8.2:-63283367 | None:intergenic |
| AGAGCAGTATTCAAAGCAAT+TGG | 0.450656 | 8.2:-63285205 | None:intergenic |
| TCCAAAGTAAGGGGTACATA+TGG | 0.451344 | 8.2:-63285265 | None:intergenic |
| ATAAGCTTTGAATTCAATGT+AGG | 0.451843 | 8.2:-63285148 | None:intergenic |
| GTTAAAGTTATTGGTAATGC+AGG | 0.453786 | 8.2:+63284707 | MS.gene051154:CDS |
| GTATTCAAAGCAATTGGACT+TGG | 0.455101 | 8.2:-63285199 | None:intergenic |
| GTACTGTATTTACAGGAAAT+CGG | 0.460103 | 8.2:+63284463 | MS.gene051154:intron |
| ACCCCTTACTTTGGAACAAA+GGG | 0.468369 | 8.2:+63285273 | MS.gene051154:CDS |
| CAGATTGCAAATGGTGTTGA+AGG | 0.470393 | 8.2:+63284587 | MS.gene051154:CDS |
| AGATGGGATTGTGGGGCTGT+TGG | 0.472579 | 8.2:+63285058 | MS.gene051154:CDS |
| TCATATACAATGTACCTTCA+AGG | 0.478777 | 8.2:+63284882 | MS.gene051154:CDS |
| ACCGAGCGAGGTTTCGCCGT+TGG | 0.479713 | 8.2:+63284761 | MS.gene051154:CDS |
| ACATATGGAAGCCTGAAAAC+AGG | 0.481922 | 8.2:-63285250 | None:intergenic |
| CTTAAGCCATGAAGCTAGAT+GGG | 0.484577 | 8.2:+63285042 | MS.gene051154:CDS |
| ATGAAGCTAGATGGGATTGT+GGG | 0.500054 | 8.2:+63285050 | MS.gene051154:CDS |
| GCGAGGTTTCGCCGTTGGAA+TGG | 0.500080 | 8.2:+63284766 | MS.gene051154:CDS |
| CTGCTGGTGAAAGGTAAAAC+CGG | 0.500692 | 8.2:-63283376 | None:intergenic |
| TATATGATGATAGGGCCTAT+AGG | 0.500953 | 8.2:-63284866 | None:intergenic |
| TACCCTTTGTTCCAAAGTAA+GGG | 0.503815 | 8.2:-63285275 | None:intergenic |
| AACCTCACATGCAGGTTTGG+TGG | 0.506544 | 8.2:+63284823 | MS.gene051154:CDS |
| TATTTACAGGAAATCGGTTG+AGG | 0.508091 | 8.2:+63284469 | MS.gene051154:intron |
| ATATCTTGACCACTCCTTGA+AGG | 0.511277 | 8.2:-63284896 | None:intergenic |
| ATTTGGTTCCAGGCTTAATG+AGG | 0.513515 | 8.2:+63285101 | MS.gene051154:CDS |
| ATGAGTTCCCTCATTAAGCC+TGG | 0.516354 | 8.2:-63285109 | None:intergenic |
| AGGTAAGTATGGAGTCTTAA+CGG | 0.522449 | 8.2:-63284519 | None:intergenic |
| TCTTGAAGCATATGATAACT+TGG | 0.522761 | 8.2:+63284556 | MS.gene051154:CDS |
| AAAAGATGTTCAAGTTCTTG+AGG | 0.527096 | 8.2:+63285348 | MS.gene051154:CDS |
| CATGAAGCTAGATGGGATTG+TGG | 0.531575 | 8.2:+63285049 | MS.gene051154:CDS |
| GTACATTGTATATGATGATA+GGG | 0.536701 | 8.2:-63284874 | None:intergenic |
| AATGTTAACCTGCTGGTGAA+AGG | 0.537482 | 8.2:-63283385 | None:intergenic |
| GCAATAAACGCAACCGAGCG+AGG | 0.539688 | 8.2:+63284749 | MS.gene051154:CDS |
| TACCCCTTACTTTGGAACAA+AGG | 0.540034 | 8.2:+63285272 | MS.gene051154:CDS |
| TTACTTTGGAACAAAGGGTA+GGG | 0.543530 | 8.2:+63285278 | MS.gene051154:CDS |
| TACTGCTCTTGCTCAACTTG+GGG | 0.558032 | 8.2:+63285219 | MS.gene051154:CDS |
| AGGGTTTGTGAATTTGGTGA+AGG | 0.558889 | 8.2:+63285297 | MS.gene051154:CDS |
| GTTGCTGGCTCAACTGGTGA+AGG | 0.569872 | 8.2:+63284617 | MS.gene051154:CDS |
| ATTTGGTGAAGGAAATGGGC+AGG | 0.570366 | 8.2:+63285308 | MS.gene051154:CDS |
| TTGAAAACTGATTCTAGTAG+AGG | 0.573884 | 8.2:+63283343 | MS.gene051154:CDS |
| GTGAAGGCCAATTAATGACA+TGG | 0.574512 | 8.2:+63284633 | MS.gene051154:CDS |
| AGCCACCAAACCTGCATGTG+AGG | 0.576182 | 8.2:-63284825 | None:intergenic |
| GTGAACATACAGATTGCAAA+TGG | 0.577102 | 8.2:+63284578 | MS.gene051154:CDS |
| AGATAAAGGAATTGTTGTGT+GGG | 0.580604 | 8.2:+63285009 | MS.gene051154:CDS |
| AATATTTCAATTACACTAGG+AGG | 0.580969 | 8.2:-63284920 | None:intergenic |
| CTTACTTTGGAACAAAGGGT+AGG | 0.581239 | 8.2:+63285277 | MS.gene051154:CDS |
| TAGTAGAGGACCCAATTCAC+CGG | 0.581511 | 8.2:+63283357 | MS.gene051154:CDS |
| GCCAATATTTCAATTACACT+AGG | 0.594176 | 8.2:-63284923 | None:intergenic |
| GTTGGTGTGAAAGAGTGTGT+GGG | 0.596538 | 8.2:+63284962 | MS.gene051154:CDS |
| AATGAGGGAACTCATGTTTG+GGG | 0.597288 | 8.2:+63285117 | MS.gene051154:CDS |
| CAGATAAAGGAATTGTTGTG+TGG | 0.598548 | 8.2:+63285008 | MS.gene051154:CDS |
| TCCAACGGCGAAACCTCGCT+CGG | 0.600152 | 8.2:-63284762 | None:intergenic |
| TGTTGGTGTGAAAGAGTGTG+TGG | 0.601574 | 8.2:+63284961 | MS.gene051154:CDS |
| ACCCTTTGTTCCAAAGTAAG+GGG | 0.603597 | 8.2:-63285274 | None:intergenic |
| TTTGGTTCCAGGCTTAATGA+GGG | 0.613924 | 8.2:+63285102 | MS.gene051154:CDS |
| AGAGTGTGTGGGAACTGAGA+GGG | 0.629024 | 8.2:+63284973 | MS.gene051154:CDS |
| GATAAAGGAATTGTTGTGTG+GGG | 0.629716 | 8.2:+63285010 | MS.gene051154:CDS |
| TACAATGTACCTTCAAGGAG+TGG | 0.632280 | 8.2:+63284887 | MS.gene051154:CDS |
| AAGTGCAGCATCCATTCCAA+CGG | 0.650931 | 8.2:-63284777 | None:intergenic |
| ATGAGGGAACTCATGTTTGG+GGG | 0.657956 | 8.2:+63285118 | MS.gene051154:CDS |
| AAGACTCCATACTTACCTAG+TGG | 0.662580 | 8.2:+63284524 | MS.gene051154:CDS |
| AAGAGTGTGTGGGAACTGAG+AGG | 0.690034 | 8.2:+63284972 | MS.gene051154:CDS |
| TGAAGCTAGATGGGATTGTG+GGG | 0.696668 | 8.2:+63285051 | MS.gene051154:CDS |
| TGAAGGCCAATTAATGACAT+GGG | 0.703308 | 8.2:+63284634 | MS.gene051154:CDS |
| TAAGTATGGAGTCTTAACGG+CGG | 0.771162 | 8.2:-63284516 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATTATTGTATAAATT+TGG | - | chr8.2:63284375-63284394 | None:intergenic | 10.0% |
| !! | TAAAATATTAAAGATCTACA+AGG | - | chr8.2:63283524-63283543 | None:intergenic | 15.0% |
| !! | AAAAATCATGGATCATAAAT+AGG | + | chr8.2:63284015-63284034 | MS.gene051154:intron | 20.0% |
| !! | ATGTATCTATCGAATTTAAT+AGG | - | chr8.2:63284312-63284331 | None:intergenic | 20.0% |
| !! | TCATTAAACTAAGCAAAATT+TGG | - | chr8.2:63284135-63284154 | None:intergenic | 20.0% |
| !!! | AACATCATTTAAGATAAGAA+TGG | - | chr8.2:63283473-63283492 | None:intergenic | 20.0% |
| !!! | ATTATCTTTTTAAGCTTTTG+TGG | + | chr8.2:63284419-63284438 | MS.gene051154:intron | 20.0% |
| ! | AATATTTCAATTACACTAGG+AGG | - | chr8.2:63284923-63284942 | None:intergenic | 25.0% |
| ! | ATTCAAATTCGTCTTATATC+AGG | - | chr8.2:63283761-63283780 | None:intergenic | 25.0% |
| ! | CATATGTTGTGTAAAAATCA+TGG | + | chr8.2:63284003-63284022 | MS.gene051154:intron | 25.0% |
| ! | GTACATTGTATATGATGATA+GGG | - | chr8.2:63284877-63284896 | None:intergenic | 25.0% |
| ! | GTAGTTACTGAACTAAATAT+AGG | + | chr8.2:63283598-63283617 | MS.gene051154:intron | 25.0% |
| ! | TCCTAGTGTAATTGAAATAT+TGG | + | chr8.2:63284922-63284941 | MS.gene051154:CDS | 25.0% |
| ! | TTTATGTGTACTGTATTTAC+AGG | + | chr8.2:63284456-63284475 | MS.gene051154:intron | 25.0% |
| !! | CATGATTTTTACACAACATA+TGG | - | chr8.2:63284005-63284024 | None:intergenic | 25.0% |
| !! | GATGATGATTTTATCATAGT+CGG | + | chr8.2:63285370-63285389 | MS.gene051154:CDS | 25.0% |
| !! | TTTTAAGCTTTTGTGGTAAT+GGG | + | chr8.2:63284426-63284445 | MS.gene051154:intron | 25.0% |
| !!! | ATAAGCTTTGAATTCAATGT+AGG | - | chr8.2:63285151-63285170 | None:intergenic | 25.0% |
| !!! | ATTCTTTAACTTGTTTCCTT+AGG | + | chr8.2:63283719-63283738 | MS.gene051154:intron | 25.0% |
| !!! | TATAATAGTTTGCTTCCTAT+AGG | + | chr8.2:63284851-63284870 | MS.gene051154:CDS | 25.0% |
| !!! | TTTTTAAGCTTTTGTGGTAA+TGG | + | chr8.2:63284425-63284444 | MS.gene051154:intron | 25.0% |
| AAATGTTAGCATGTGTCATA+AGG | + | chr8.2:63283575-63283594 | MS.gene051154:intron | 30.0% | |
| AATGTTAGCATGTGTCATAA+GGG | + | chr8.2:63283576-63283595 | MS.gene051154:intron | 30.0% | |
| AATTCGATAGATACATTTGC+AGG | + | chr8.2:63284316-63284335 | MS.gene051154:intron | 30.0% | |
| AGATAAAGGAATTGTTGTGT+GGG | + | chr8.2:63285009-63285028 | MS.gene051154:CDS | 30.0% | |
| ATAGCTACAACTACAAGATT+TGG | - | chr8.2:63284105-63284124 | None:intergenic | 30.0% | |
| CTTCATATAAACCCTTACTA+TGG | + | chr8.2:63284797-63284816 | MS.gene051154:CDS | 30.0% | |
| GCCAATATTTCAATTACACT+AGG | - | chr8.2:63284926-63284945 | None:intergenic | 30.0% | |
| GGTACATTGTATATGATGAT+AGG | - | chr8.2:63284878-63284897 | None:intergenic | 30.0% | |
| GTACTGTATTTACAGGAAAT+CGG | + | chr8.2:63284463-63284482 | MS.gene051154:intron | 30.0% | |
| GTCGTTGAATTAAGATCAAA+CGG | - | chr8.2:63283908-63283927 | None:intergenic | 30.0% | |
| GTGAAAATGTACACAGATAA+AGG | + | chr8.2:63284995-63285014 | MS.gene051154:CDS | 30.0% | |
| TAGGAAAAAGTTTAGCATCT+TGG | + | chr8.2:63283617-63283636 | MS.gene051154:intron | 30.0% | |
| TATGAAAAATGTTAACCTGC+TGG | - | chr8.2:63283395-63283414 | None:intergenic | 30.0% | |
| TCATATACAATGTACCTTCA+AGG | + | chr8.2:63284882-63284901 | MS.gene051154:CDS | 30.0% | |
| TCTTGAAGCATATGATAACT+TGG | + | chr8.2:63284556-63284575 | MS.gene051154:CDS | 30.0% | |
| TCTTTCACACCAACAAAATT+TGG | - | chr8.2:63284956-63284975 | None:intergenic | 30.0% | |
| TTAGATCGAGATCAAAACAA+TGG | + | chr8.2:63283824-63283843 | MS.gene051154:intron | 30.0% | |
| ! | AAAAGATGTTCAAGTTCTTG+AGG | + | chr8.2:63285348-63285367 | MS.gene051154:CDS | 30.0% |
| ! | AGCTTATGACTTTGTTTGAT+TGG | + | chr8.2:63285164-63285183 | MS.gene051154:CDS | 30.0% |
| ! | ATTTTTCCACTAGGTAAGTA+TGG | - | chr8.2:63284533-63284552 | None:intergenic | 30.0% |
| ! | CAAGTCTAAGACAAGTAAAT+TGG | + | chr8.2:63284057-63284076 | MS.gene051154:intron | 30.0% |
| ! | GCTCAAAATCCAAATTTTGT+TGG | + | chr8.2:63284944-63284963 | MS.gene051154:CDS | 30.0% |
| ! | TTGAAAACTGATTCTAGTAG+AGG | + | chr8.2:63283343-63283362 | MS.gene051154:CDS | 30.0% |
| !! | GTTAAAGTTATTGGTAATGC+AGG | + | chr8.2:63284707-63284726 | MS.gene051154:CDS | 30.0% |
| !! | TCAAGATCTATTTTTCCACT+AGG | - | chr8.2:63284542-63284561 | None:intergenic | 30.0% |
| AAAGGTAAAACCGGTGAATT+GGG | - | chr8.2:63283370-63283389 | None:intergenic | 35.0% | |
| AAGCTTACGGTATGTGTTTA+TGG | - | chr8.2:63284175-63284194 | None:intergenic | 35.0% | |
| AGAGCAGTATTCAAAGCAAT+TGG | - | chr8.2:63285208-63285227 | None:intergenic | 35.0% | |
| AGGTAAGTATGGAGTCTTAA+CGG | - | chr8.2:63284522-63284541 | None:intergenic | 35.0% | |
| AGTCTGCAGTTTACTTTGTT+TGG | + | chr8.2:63283431-63283450 | MS.gene051154:intron | 35.0% | |
| CAGATAAAGGAATTGTTGTG+TGG | + | chr8.2:63285008-63285027 | MS.gene051154:CDS | 35.0% | |
| GATAAAGGAATTGTTGTGTG+GGG | + | chr8.2:63285010-63285029 | MS.gene051154:CDS | 35.0% | |
| GCTCACACAGTTAATTGTTT+CGG | + | chr8.2:63284677-63284696 | MS.gene051154:CDS | 35.0% | |
| GGCGACAAAGTTAAAGTTAT+TGG | + | chr8.2:63284698-63284717 | MS.gene051154:CDS | 35.0% | |
| GTATTCAAAGCAATTGGACT+TGG | - | chr8.2:63285202-63285221 | None:intergenic | 35.0% | |
| GTGAACATACAGATTGCAAA+TGG | + | chr8.2:63284578-63284597 | MS.gene051154:CDS | 35.0% | |
| GTTCATCCCATGTCATTAAT+TGG | - | chr8.2:63284643-63284662 | None:intergenic | 35.0% | |
| TAATGAGGGAACTCATGTTT+GGG | + | chr8.2:63285116-63285135 | MS.gene051154:CDS | 35.0% | |
| TACCCTTTGTTCCAAAGTAA+GGG | - | chr8.2:63285278-63285297 | None:intergenic | 35.0% | |
| TATATGATGATAGGGCCTAT+AGG | - | chr8.2:63284869-63284888 | None:intergenic | 35.0% | |
| TATTTACAGGAAATCGGTTG+AGG | + | chr8.2:63284469-63284488 | MS.gene051154:intron | 35.0% | |
| TCAATCTGTTGCAAGCAATT+TGG | + | chr8.2:63285084-63285103 | MS.gene051154:CDS | 35.0% | |
| TGAAGGCCAATTAATGACAT+GGG | + | chr8.2:63284634-63284653 | MS.gene051154:CDS | 35.0% | |
| TTAATGAGGGAACTCATGTT+TGG | + | chr8.2:63285115-63285134 | MS.gene051154:CDS | 35.0% | |
| TTACGCAGACAATTCATCAA+TGG | + | chr8.2:63283798-63283817 | MS.gene051154:intron | 35.0% | |
| ! | GTGAATTTGGTGAAGGAAAT+GGG | + | chr8.2:63285304-63285323 | MS.gene051154:CDS | 35.0% |
| ! | GTGAGGTTTTTCCATAGTAA+GGG | - | chr8.2:63284811-63284830 | None:intergenic | 35.0% |
| ! | TGTGAATTTGGTGAAGGAAA+TGG | + | chr8.2:63285303-63285322 | MS.gene051154:CDS | 35.0% |
| ! | TGTGAGGTTTTTCCATAGTA+AGG | - | chr8.2:63284812-63284831 | None:intergenic | 35.0% |
| !! | TAACTTGTTTCCTTAGGACA+CGG | + | chr8.2:63283725-63283744 | MS.gene051154:intron | 35.0% |
| !! | TTACTTTGGAACAAAGGGTA+GGG | + | chr8.2:63285278-63285297 | MS.gene051154:CDS | 35.0% |
| AAAAACCTCACATGCAGGTT+TGG | + | chr8.2:63284820-63284839 | MS.gene051154:CDS | 40.0% | |
| AAGACTCCATACTTACCTAG+TGG | + | chr8.2:63284524-63284543 | MS.gene051154:CDS | 40.0% | |
| AAGGGTAGGGTTTGTGAATT+TGG | + | chr8.2:63285291-63285310 | MS.gene051154:CDS | 40.0% | |
| AATACTGCTCTTGCTCAACT+TGG | + | chr8.2:63285217-63285236 | MS.gene051154:CDS | 40.0% | |
| AATGAGGGAACTCATGTTTG+GGG | + | chr8.2:63285117-63285136 | MS.gene051154:CDS | 40.0% | |
| AATGTTAACCTGCTGGTGAA+AGG | - | chr8.2:63283388-63283407 | None:intergenic | 40.0% | |
| ACATATGGAAGCCTGAAAAC+AGG | - | chr8.2:63285253-63285272 | None:intergenic | 40.0% | |
| ACCCTTTGTTCCAAAGTAAG+GGG | - | chr8.2:63285277-63285296 | None:intergenic | 40.0% | |
| ACTTAAGCCATGAAGCTAGA+TGG | + | chr8.2:63285041-63285060 | MS.gene051154:CDS | 40.0% | |
| ATACTGCTCTTGCTCAACTT+GGG | + | chr8.2:63285218-63285237 | MS.gene051154:CDS | 40.0% | |
| ATATCTTGACCACTCCTTGA+AGG | - | chr8.2:63284899-63284918 | None:intergenic | 40.0% | |
| ATGAAGCTAGATGGGATTGT+GGG | + | chr8.2:63285050-63285069 | MS.gene051154:CDS | 40.0% | |
| CTACCCTTTGTTCCAAAGTA+AGG | - | chr8.2:63285279-63285298 | None:intergenic | 40.0% | |
| CTTAAGCCATGAAGCTAGAT+GGG | + | chr8.2:63285042-63285061 | MS.gene051154:CDS | 40.0% | |
| GAAAGGTAAAACCGGTGAAT+TGG | - | chr8.2:63283371-63283390 | None:intergenic | 40.0% | |
| GATAGATACATTTGCAGGAC+TGG | + | chr8.2:63284321-63284340 | MS.gene051154:intron | 40.0% | |
| GTGAAGGCCAATTAATGACA+TGG | + | chr8.2:63284633-63284652 | MS.gene051154:CDS | 40.0% | |
| TAAGTATGGAGTCTTAACGG+CGG | - | chr8.2:63284519-63284538 | None:intergenic | 40.0% | |
| TACAATGTACCTTCAAGGAG+TGG | + | chr8.2:63284887-63284906 | MS.gene051154:CDS | 40.0% | |
| TATGGAAAAACCTCACATGC+AGG | + | chr8.2:63284815-63284834 | MS.gene051154:CDS | 40.0% | |
| TCCATATGTACCCCTTACTT+TGG | + | chr8.2:63285264-63285283 | MS.gene051154:CDS | 40.0% | |
| ! | AACTTGTTTCCTTAGGACAC+GGG | + | chr8.2:63283726-63283745 | MS.gene051154:intron | 40.0% |
| ! | AGGGTTTGTGAATTTGGTGA+AGG | + | chr8.2:63285297-63285316 | MS.gene051154:CDS | 40.0% |
| ! | ATGGGCAGGCAACATTTTAT+TGG | + | chr8.2:63285322-63285341 | MS.gene051154:CDS | 40.0% |
| ! | ATTTGGTTCCAGGCTTAATG+AGG | + | chr8.2:63285101-63285120 | MS.gene051154:CDS | 40.0% |
| ! | CAGATTGCAAATGGTGTTGA+AGG | + | chr8.2:63284587-63284606 | MS.gene051154:CDS | 40.0% |
| ! | CAGCTGTTTGTTGAAGCTTA+CGG | - | chr8.2:63284188-63284207 | None:intergenic | 40.0% |
| ! | TCCAAAGTAAGGGGTACATA+TGG | - | chr8.2:63285268-63285287 | None:intergenic | 40.0% |
| ! | TTTGGTTCCAGGCTTAATGA+GGG | + | chr8.2:63285102-63285121 | MS.gene051154:CDS | 40.0% |
| !! | ACCCCTTACTTTGGAACAAA+GGG | + | chr8.2:63285273-63285292 | MS.gene051154:CDS | 40.0% |
| !! | CTTACTTTGGAACAAAGGGT+AGG | + | chr8.2:63285277-63285296 | MS.gene051154:CDS | 40.0% |
| !! | GTTGAAGGTATTCTTGTTGC+TGG | + | chr8.2:63284602-63284621 | MS.gene051154:CDS | 40.0% |
| !! | TACCCCTTACTTTGGAACAA+AGG | + | chr8.2:63285272-63285291 | MS.gene051154:CDS | 40.0% |
| AAGTGCAGCATCCATTCCAA+CGG | - | chr8.2:63284780-63284799 | None:intergenic | 45.0% | |
| ATGAGGGAACTCATGTTTGG+GGG | + | chr8.2:63285118-63285137 | MS.gene051154:CDS | 45.0% | |
| ATGAGTTCCCTCATTAAGCC+TGG | - | chr8.2:63285112-63285131 | None:intergenic | 45.0% | |
| CATGAAGCTAGATGGGATTG+TGG | + | chr8.2:63285049-63285068 | MS.gene051154:CDS | 45.0% | |
| CTGCTGGTGAAAGGTAAAAC+CGG | - | chr8.2:63283379-63283398 | None:intergenic | 45.0% | |
| TACTGCTCTTGCTCAACTTG+GGG | + | chr8.2:63285219-63285238 | MS.gene051154:CDS | 45.0% | |
| TAGTAGAGGACCCAATTCAC+CGG | + | chr8.2:63283357-63283376 | MS.gene051154:CDS | 45.0% | |
| TGAAGCTAGATGGGATTGTG+GGG | + | chr8.2:63285051-63285070 | MS.gene051154:CDS | 45.0% | |
| ! | ATTTGGTGAAGGAAATGGGC+AGG | + | chr8.2:63285308-63285327 | MS.gene051154:CDS | 45.0% |
| ! | CACAATCCCATCTAGCTTCA+TGG | - | chr8.2:63285051-63285070 | None:intergenic | 45.0% |
| ! | GGGTTATCAAGCCTGTTTTC+AGG | + | chr8.2:63285239-63285258 | MS.gene051154:CDS | 45.0% |
| ! | GTTGCAAGCAATTTGGTTCC+AGG | + | chr8.2:63285091-63285110 | MS.gene051154:CDS | 45.0% |
| ! | GTTGGTGTGAAAGAGTGTGT+GGG | + | chr8.2:63284962-63284981 | MS.gene051154:CDS | 45.0% |
| ! | TGTTGGTGTGAAAGAGTGTG+TGG | + | chr8.2:63284961-63284980 | MS.gene051154:CDS | 45.0% |
| !! | ATTCTTGTTGCTGGCTCAAC+TGG | + | chr8.2:63284611-63284630 | MS.gene051154:CDS | 45.0% |
| AACCTCACATGCAGGTTTGG+TGG | + | chr8.2:63284823-63284842 | MS.gene051154:CDS | 50.0% | |
| ACAGCTGCGAGACTTGATGT+TGG | + | chr8.2:63284201-63284220 | MS.gene051154:intron | 50.0% | |
| AGAGTGTGTGGGAACTGAGA+GGG | + | chr8.2:63284973-63284992 | MS.gene051154:CDS | 50.0% | |
| GCTCAACGGCGGTAAAAGAT+AGG | + | chr8.2:63284238-63284257 | MS.gene051154:intron | 50.0% | |
| TCATACTGACCCGTGTCCTA+AGG | - | chr8.2:63283738-63283757 | None:intergenic | 50.0% | |
| ! | AAGAGTGTGTGGGAACTGAG+AGG | + | chr8.2:63284972-63284991 | MS.gene051154:CDS | 50.0% |
| ! | CGGTTTTACCTTTCACCAGC+AGG | + | chr8.2:63283377-63283396 | MS.gene051154:CDS | 50.0% |
| AGATGGGATTGTGGGGCTGT+TGG | + | chr8.2:63285058-63285077 | MS.gene051154:CDS | 55.0% | |
| AGCCACCAAACCTGCATGTG+AGG | - | chr8.2:63284828-63284847 | None:intergenic | 55.0% | |
| CCTCCCTTTGAGCAGCTCAA+CGG | + | chr8.2:63284224-63284243 | MS.gene051154:intron | 55.0% | |
| GCAATAAACGCAACCGAGCG+AGG | + | chr8.2:63284749-63284768 | MS.gene051154:CDS | 55.0% | |
| !! | GTTGCTGGCTCAACTGGTGA+AGG | + | chr8.2:63284617-63284636 | MS.gene051154:CDS | 55.0% |
| ACCGCCGTTGAGCTGCTCAA+AGG | - | chr8.2:63284231-63284250 | None:intergenic | 60.0% | |
| CCCTTTGAGCAGCTCAACGG+CGG | + | chr8.2:63284227-63284246 | MS.gene051154:intron | 60.0% | |
| CCGCCGTTGAGCTGCTCAAA+GGG | - | chr8.2:63284230-63284249 | None:intergenic | 60.0% | |
| CCGTTGAGCTGCTCAAAGGG+AGG | - | chr8.2:63284227-63284246 | None:intergenic | 60.0% | |
| GCGAGGTTTCGCCGTTGGAA+TGG | + | chr8.2:63284766-63284785 | MS.gene051154:CDS | 60.0% | |
| TCCAACGGCGAAACCTCGCT+CGG | - | chr8.2:63284765-63284784 | None:intergenic | 60.0% | |
| ACCGAGCGAGGTTTCGCCGT+TGG | + | chr8.2:63284761-63284780 | MS.gene051154:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 63283334 | 63285402 | 63283334 | ID=MS.gene051154 |
| chr8.2 | mRNA | 63283334 | 63285402 | 63283334 | ID=MS.gene051154.t1;Parent=MS.gene051154 |
| chr8.2 | exon | 63283334 | 63283398 | 63283334 | ID=MS.gene051154.t1.exon1;Parent=MS.gene051154.t1 |
| chr8.2 | CDS | 63283334 | 63283398 | 63283334 | ID=cds.MS.gene051154.t1;Parent=MS.gene051154.t1 |
| chr8.2 | exon | 63284478 | 63285402 | 63284478 | ID=MS.gene051154.t1.exon2;Parent=MS.gene051154.t1 |
| chr8.2 | CDS | 63284478 | 63285402 | 63284478 | ID=cds.MS.gene051154.t1;Parent=MS.gene051154.t1 |
| Gene Sequence |
| Protein sequence |
