Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68108.t1 | KEH43325.1 | 92.2 | 488 | 6 | 3 | 1 | 456 | 83 | 570 | 4.50E-246 | 860.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68108.t1 | Q84P21 | 45.5 | 483 | 222 | 8 | 1 | 445 | 58 | 537 | 5.1e-105 | 382.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68108.t1 | A0A072VZ46 | 92.2 | 488 | 6 | 3 | 1 | 456 | 83 | 570 | 3.3e-246 | 860.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049993 | MS.gene68108 | 0.806063 | 9.87E-50 | -1.69E-46 |
| MS.gene051208 | MS.gene68108 | 0.813956 | 1.97E-51 | -1.69E-46 |
| MS.gene051525 | MS.gene68108 | 0.843885 | 1.06E-58 | -1.69E-46 |
| MS.gene051588 | MS.gene68108 | 0.818328 | 2.08E-52 | -1.69E-46 |
| MS.gene052011 | MS.gene68108 | -0.823428 | 1.39E-53 | -1.69E-46 |
| MS.gene052982 | MS.gene68108 | 0.81299 | 3.21E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene68108 | 0.820179 | 7.87E-53 | -1.69E-46 |
| MS.gene054719 | MS.gene68108 | 0.819433 | 1.16E-52 | -1.69E-46 |
| MS.gene054917 | MS.gene68108 | 0.820434 | 6.88E-53 | -1.69E-46 |
| MS.gene054920 | MS.gene68108 | 0.841652 | 4.17E-58 | -1.69E-46 |
| MS.gene05594 | MS.gene68108 | 0.82728 | 1.71E-54 | -1.69E-46 |
| MS.gene056514 | MS.gene68108 | 0.808301 | 3.31E-50 | -1.69E-46 |
| MS.gene057476 | MS.gene68108 | 0.815396 | 9.45E-52 | -1.69E-46 |
| MS.gene057888 | MS.gene68108 | 0.831465 | 1.64E-55 | -1.69E-46 |
| MS.gene058885 | MS.gene68108 | 0.824158 | 9.39E-54 | -1.69E-46 |
| MS.gene059420 | MS.gene68108 | 0.827031 | 1.96E-54 | -1.69E-46 |
| MS.gene059683 | MS.gene68108 | 0.804252 | 2.36E-49 | -1.69E-46 |
| MS.gene059958 | MS.gene68108 | 0.804063 | 2.59E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 101 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCAATGTTTCATGTCTA+TGG | 0.176321 | 1.2:+68031229 | MS.gene68108:CDS |
| ATCAGCTTTCCACATGCTTC+TGG | 0.219682 | 1.2:-68031595 | None:intergenic |
| GGACTGATGTTCTTTGGATT+TGG | 0.232726 | 1.2:+68031250 | MS.gene68108:CDS |
| GTCTATGGACTGATGTTCTT+TGG | 0.250992 | 1.2:+68031244 | MS.gene68108:CDS |
| GTTGAGTACAAGATTGAGTT+TGG | 0.273727 | 1.2:-68030795 | None:intergenic |
| TAACTGCTGCATCAACAATA+AGG | 0.276654 | 1.2:-68032062 | None:intergenic |
| GCCGCTATACTTTACTCTTC+AGG | 0.280862 | 1.2:+68031088 | MS.gene68108:CDS |
| CCAGCAGAGCAGTTTCATTA+TGG | 0.284701 | 1.2:-68031161 | None:intergenic |
| ACCAATTTGTGTAACTCTTC+TGG | 0.296211 | 1.2:-68030936 | None:intergenic |
| GACTGATGTTCTTTGGATTT+GGG | 0.298826 | 1.2:+68031251 | MS.gene68108:CDS |
| CATGTCATTCAATTTGTTGC+AGG | 0.341335 | 1.2:+68032244 | MS.gene68108:CDS |
| AATCAAGCACAAAGGGTATC+AGG | 0.343261 | 1.2:+68031842 | MS.gene68108:CDS |
| CTACATAGTTGAACGAATAA+AGG | 0.367598 | 1.2:+68031815 | MS.gene68108:CDS |
| AACTGCTGCATCAACAATAA+GGG | 0.374049 | 1.2:-68032061 | None:intergenic |
| CTTGCAACAGCTTTGTTCCA+TGG | 0.383330 | 1.2:+68030732 | MS.gene68108:CDS |
| TCAGGTAGCTCCTGCAGAAC+TGG | 0.384556 | 1.2:+68032017 | MS.gene68108:intron |
| ACCAGAAGAGTTACACAAAT+TGG | 0.386896 | 1.2:+68030935 | MS.gene68108:CDS |
| TCAGTTGAAGAGTTAATAGA+AGG | 0.392562 | 1.2:+68031013 | MS.gene68108:CDS |
| AGGGTTGAAGATGAAGAAAC+TGG | 0.395025 | 1.2:+68032166 | MS.gene68108:intron |
| CACCTGAGCCAACCCTTCTT+AGG | 0.395579 | 1.2:-68031435 | None:intergenic |
| GCGAAGCAAGTACATGATTC+AGG | 0.402603 | 1.2:+68030891 | MS.gene68108:CDS |
| CTTTACTCTTCAGGGACTAC+TGG | 0.405377 | 1.2:+68031097 | MS.gene68108:CDS |
| TATTTCCTTGGGTTGAACTA+AGG | 0.410515 | 1.2:+68031500 | MS.gene68108:CDS |
| GTTCAGAAAGCTATTTCCTT+GGG | 0.412932 | 1.2:+68031489 | MS.gene68108:CDS |
| CCGCTATACTTTACTCTTCA+GGG | 0.425254 | 1.2:+68031089 | MS.gene68108:CDS |
| GTTGAACTAAGGGCGGGTTA+TGG | 0.435071 | 1.2:+68031511 | MS.gene68108:CDS |
| CCATAATGAAACTGCTCTGC+TGG | 0.435438 | 1.2:+68031161 | MS.gene68108:CDS |
| CATTCAATTTGTTGCAGGCC+AGG | 0.446682 | 1.2:+68032249 | MS.gene68108:CDS |
| GGATTTGGGTTGTTGTGTGT+TGG | 0.451406 | 1.2:+68031265 | MS.gene68108:CDS |
| TTCACCAATGAGTGGATAAC+TGG | 0.452438 | 1.2:-68031379 | None:intergenic |
| GCTATTATGAAAGAATATCT+AGG | 0.453902 | 1.2:+68031705 | MS.gene68108:CDS |
| GTGATTTGTCTAGCCTAAGA+AGG | 0.457731 | 1.2:+68031422 | MS.gene68108:CDS |
| AGCACAGATTCCAGTTCTGC+AGG | 0.460066 | 1.2:-68032027 | None:intergenic |
| TGGATAACTGGTGGCACTGC+TGG | 0.462633 | 1.2:-68031367 | None:intergenic |
| CATGGACTTGAGATTAGAAA+AGG | 0.469403 | 1.2:+68030750 | MS.gene68108:CDS |
| TTACACAAATTGGTCCCAAC+TGG | 0.471916 | 1.2:+68030945 | MS.gene68108:CDS |
| GCATATGTGGTGAGGGCAGC+TGG | 0.475126 | 1.2:+68032202 | MS.gene68108:CDS |
| CAACAATTGATTCAGAAGGT+TGG | 0.475182 | 1.2:+68031748 | MS.gene68108:CDS |
| TGGTTGAGGACAGGTGATCT+TGG | 0.485306 | 1.2:+68031768 | MS.gene68108:CDS |
| GCAGTGTCTGATTGCTCCAC+AGG | 0.486700 | 1.2:-68031067 | None:intergenic |
| TGATTTAGTATTGAGAGGGT+TGG | 0.488156 | 1.2:-68030862 | None:intergenic |
| GACATGAAACATTGGAATGA+AGG | 0.489639 | 1.2:-68031224 | None:intergenic |
| AGTTCAGAAAGCTATTTCCT+TGG | 0.490058 | 1.2:+68031488 | MS.gene68108:CDS |
| AGGTGCTGCACCTTTGAGTA+AGG | 0.492711 | 1.2:+68031453 | MS.gene68108:CDS |
| ATTTCCTTGGGTTGAACTAA+GGG | 0.492805 | 1.2:+68031501 | MS.gene68108:CDS |
| CTTGGTTATATCGATGAGAA+TGG | 0.496399 | 1.2:+68031786 | MS.gene68108:CDS |
| TAACTCTTCTGGTGCTGAGA+TGG | 0.504393 | 1.2:-68030925 | None:intergenic |
| ATGGACTAACAGAAAGTTGT+GGG | 0.505501 | 1.2:+68031530 | MS.gene68108:CDS |
| AGCCTAAGAAGGGTTGGCTC+AGG | 0.509742 | 1.2:+68031433 | MS.gene68108:CDS |
| AGGAGCTAATCAAGCACAAA+GGG | 0.511589 | 1.2:+68031835 | MS.gene68108:CDS |
| CACTCAAGGAAGGAGAGTTA+TGG | 0.515549 | 1.2:+68031670 | MS.gene68108:intron |
| GCCACCAGTTATCCACTCAT+TGG | 0.516190 | 1.2:+68031375 | MS.gene68108:CDS |
| TGTTTAGCTGTGTTATCAGT+TGG | 0.521525 | 1.2:+68030822 | MS.gene68108:CDS |
| GTGAAACATGCTAGCAAAGA+TGG | 0.522574 | 1.2:+68031397 | MS.gene68108:CDS |
| TTGATTCAGAAGGTTGGTTG+AGG | 0.524384 | 1.2:+68031754 | MS.gene68108:CDS |
| TCAGAAGGTTGGTTGAGGAC+AGG | 0.530736 | 1.2:+68031759 | MS.gene68108:CDS |
| TTTCTGATTTAGTATTGAGA+GGG | 0.531374 | 1.2:-68030866 | None:intergenic |
| CATGGAACAAAGCTGTTGCA+AGG | 0.549110 | 1.2:-68030731 | None:intergenic |
| CCTTGGGTTGAACTAAGGGC+GGG | 0.553742 | 1.2:+68031505 | MS.gene68108:CDS |
| ACTAATCATAGTGTAACTTA+CGG | 0.554617 | 1.2:+68030684 | None:intergenic |
| TCCTTGGGTTGAACTAAGGG+CGG | 0.554693 | 1.2:+68031504 | MS.gene68108:CDS |
| AGAATTGTAGGAACTCCAGT+TGG | 0.555282 | 1.2:-68030960 | None:intergenic |
| AGTATACCGAGGTCAGCTGC+TGG | 0.555861 | 1.2:+68032670 | MS.gene68108:CDS |
| TTTGAGTAAGGAAATGTCAC+TGG | 0.559342 | 1.2:+68031465 | MS.gene68108:CDS |
| ACCAATGGCATATGTGGTGA+GGG | 0.561041 | 1.2:+68032195 | MS.gene68108:CDS |
| GCCCTCACCACATATGCCAT+TGG | 0.565672 | 1.2:-68032196 | None:intergenic |
| ATTTCTGATTTAGTATTGAG+AGG | 0.569356 | 1.2:-68030867 | None:intergenic |
| TTGTCTAGCCTAAGAAGGGT+TGG | 0.570054 | 1.2:+68031427 | MS.gene68108:CDS |
| GAATTGTAGGAACTCCAGTT+GGG | 0.571691 | 1.2:-68030959 | None:intergenic |
| AGAATATCTAGGAAATATTG+AGG | 0.571721 | 1.2:+68031716 | MS.gene68108:CDS |
| CTCACAACTTAGAAACAAGC+TGG | 0.574328 | 1.2:-68032732 | None:intergenic |
| AGTATTGAGAGGGTTGGCTG+TGG | 0.583867 | 1.2:-68030856 | None:intergenic |
| TGATTTGTCTAGCCTAAGAA+GGG | 0.587869 | 1.2:+68031423 | MS.gene68108:CDS |
| ATCTTGCCAGCAGCTGACCT+CGG | 0.591787 | 1.2:-68032676 | None:intergenic |
| TACCAATGGCATATGTGGTG+AGG | 0.595660 | 1.2:+68032194 | MS.gene68108:CDS |
| ACTGCAACAATTGATTCAGA+AGG | 0.598082 | 1.2:+68031744 | MS.gene68108:CDS |
| ACTGCTGCATCAACAATAAG+GGG | 0.600356 | 1.2:-68032060 | None:intergenic |
| AGTGACATTTCCTTACTCAA+AGG | 0.602475 | 1.2:-68031463 | None:intergenic |
| GCAGATACCAATGGCATATG+TGG | 0.613364 | 1.2:+68032189 | MS.gene68108:CDS |
| AGTCCATAGACATGAAACAT+TGG | 0.615670 | 1.2:-68031232 | None:intergenic |
| CTCCATATAGAAAGTGAGAA+GGG | 0.617278 | 1.2:+68032633 | MS.gene68108:intron |
| AAGGAGCTAATCAAGCACAA+AGG | 0.617428 | 1.2:+68031834 | MS.gene68108:CDS |
| ATGGAACAAAGCTGTTGCAA+GGG | 0.623142 | 1.2:-68030730 | None:intergenic |
| GATTGCTCCACAGGAACATG+TGG | 0.623243 | 1.2:-68031058 | None:intergenic |
| GCTCCATATAGAAAGTGAGA+AGG | 0.624360 | 1.2:+68032632 | MS.gene68108:intron |
| CCCGCCCTTAGTTCAACCCA+AGG | 0.635164 | 1.2:-68031505 | None:intergenic |
| GGGACTACTGGAGTAAGCAA+AGG | 0.641617 | 1.2:+68031109 | MS.gene68108:CDS |
| CCCTGAAGAGTAAAGTATAG+CGG | 0.649066 | 1.2:-68031089 | None:intergenic |
| ACCAATGAGTGGATAACTGG+TGG | 0.649415 | 1.2:-68031376 | None:intergenic |
| GGGTTGAAGATGAAGAAACT+GGG | 0.650548 | 1.2:+68032167 | MS.gene68108:intron |
| AGAATTGCCACATGTTCCTG+TGG | 0.656792 | 1.2:+68031051 | MS.gene68108:CDS |
| AAAGCTCATCCAGAAGCATG+TGG | 0.657133 | 1.2:+68031586 | MS.gene68108:CDS |
| GAAACATTGGAATGAAGGCG+AGG | 0.657962 | 1.2:-68031219 | None:intergenic |
| AGAAACTGGGCAGATACCAA+TGG | 0.659161 | 1.2:+68032180 | MS.gene68108:CDS |
| TATGGACTAACAGAAAGTTG+TGG | 0.659761 | 1.2:+68031529 | MS.gene68108:CDS |
| CTGCAACAAATTGAATGACA+TGG | 0.661163 | 1.2:-68032243 | None:intergenic |
| TAGCATGTTTCACCAATGAG+TGG | 0.661752 | 1.2:-68031387 | None:intergenic |
| CTTCTCGATAGCGACAAGCA+TGG | 0.668123 | 1.2:-68031326 | None:intergenic |
| GGACTAACAGAAAGTTGTGG+GGG | 0.674978 | 1.2:+68031532 | MS.gene68108:CDS |
| TGGACTAACAGAAAGTTGTG+GGG | 0.694783 | 1.2:+68031531 | MS.gene68108:CDS |
| GGAGAGTTATGGTTGAAAAG+CGG | 0.697534 | 1.2:+68031681 | MS.gene68108:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTTAACTTAAATAATC+AGG | - | chr1.2:68032392-68032411 | None:intergenic | 10.0% |
| !!! | AGTTTTTATTAATACATATA+TGG | + | chr1.2:68031984-68032003 | MS.gene68108:intron | 10.0% |
| !! | AGTAAATTACTTTAATTCTA+AGG | + | chr1.2:68031936-68031955 | MS.gene68108:intron | 15.0% |
| !!! | TTTGTATTTTAAACCTAATT+AGG | - | chr1.2:68032435-68032454 | None:intergenic | 15.0% |
| !! | AGAGAAATTAAAATGACTAT+AGG | - | chr1.2:68032569-68032588 | None:intergenic | 20.0% |
| !! | ATAAATAGTTTCAGTTTCAA+TGG | + | chr1.2:68031876-68031895 | MS.gene68108:intron | 20.0% |
| !! | ATGAAAATAAGAGTGAAAAT+AGG | - | chr1.2:68032107-68032126 | None:intergenic | 20.0% |
| !! | ATTGAAACTGAAACTATTTA+TGG | - | chr1.2:68031877-68031896 | None:intergenic | 20.0% |
| !!! | AAATAAATCTGAGAATTTTC+AGG | + | chr1.2:68032607-68032626 | MS.gene68108:intron | 20.0% |
| ! | AAAATAAGAGTGAAAATAGG+CGG | - | chr1.2:68032104-68032123 | None:intergenic | 25.0% |
| ! | AGAATATCTAGGAAATATTG+AGG | + | chr1.2:68031716-68031735 | MS.gene68108:CDS | 25.0% |
| ! | GCTATTATGAAAGAATATCT+AGG | + | chr1.2:68031705-68031724 | MS.gene68108:CDS | 25.0% |
| !! | ATTTCTGATTTAGTATTGAG+AGG | - | chr1.2:68030870-68030889 | None:intergenic | 25.0% |
| !! | TTTCTGATTTAGTATTGAGA+GGG | - | chr1.2:68030869-68030888 | None:intergenic | 25.0% |
| !!! | TTATTTTACTGCATGAAATC+AGG | - | chr1.2:68032291-68032310 | None:intergenic | 25.0% |
| AAAGTGATAGACATTGAAAC+AGG | + | chr1.2:68031634-68031653 | MS.gene68108:intron | 30.0% | |
| AGTTATTGCATCTAGATTGT+TGG | - | chr1.2:68032486-68032505 | None:intergenic | 30.0% | |
| ATTCCAATGTTTCATGTCTA+TGG | + | chr1.2:68031229-68031248 | MS.gene68108:CDS | 30.0% | |
| ATTGTTGGATGAATGTCATA+TGG | - | chr1.2:68032471-68032490 | None:intergenic | 30.0% | |
| CTACATAGTTGAACGAATAA+AGG | + | chr1.2:68031815-68031834 | MS.gene68108:CDS | 30.0% | |
| TATTCTGACTTCACCTAATT+AGG | + | chr1.2:68032419-68032438 | MS.gene68108:intron | 30.0% | |
| TCAGTTGAAGAGTTAATAGA+AGG | + | chr1.2:68031013-68031032 | MS.gene68108:CDS | 30.0% | |
| ! | CATTGTAATCATTGTTGCTT+AGG | + | chr1.2:68032319-68032338 | MS.gene68108:intron | 30.0% |
| ! | TCTAAGGTATCAATTGAGTT+TGG | + | chr1.2:68031952-68031971 | MS.gene68108:intron | 30.0% |
| !! | ATCACTTTTGCACAAAAAGT+TGG | - | chr1.2:68031622-68031641 | None:intergenic | 30.0% |
| !! | TAAATCTGAGAATTTTCAGG+TGG | + | chr1.2:68032610-68032629 | MS.gene68108:intron | 30.0% |
| AACTGCTGCATCAACAATAA+GGG | - | chr1.2:68032064-68032083 | None:intergenic | 35.0% | |
| ACCAATTTGTGTAACTCTTC+TGG | - | chr1.2:68030939-68030958 | None:intergenic | 35.0% | |
| ACCAGAAGAGTTACACAAAT+TGG | + | chr1.2:68030935-68030954 | MS.gene68108:CDS | 35.0% | |
| AGTCCATAGACATGAAACAT+TGG | - | chr1.2:68031235-68031254 | None:intergenic | 35.0% | |
| AGTGACATTTCCTTACTCAA+AGG | - | chr1.2:68031466-68031485 | None:intergenic | 35.0% | |
| CATGGACTTGAGATTAGAAA+AGG | + | chr1.2:68030750-68030769 | MS.gene68108:CDS | 35.0% | |
| CTCCATATAGAAAGTGAGAA+GGG | + | chr1.2:68032633-68032652 | MS.gene68108:intron | 35.0% | |
| CTGCAACAAATTGAATGACA+TGG | - | chr1.2:68032246-68032265 | None:intergenic | 35.0% | |
| CTTGGTTATATCGATGAGAA+TGG | + | chr1.2:68031786-68031805 | MS.gene68108:CDS | 35.0% | |
| GACATGAAACATTGGAATGA+AGG | - | chr1.2:68031227-68031246 | None:intergenic | 35.0% | |
| GACTGATGTTCTTTGGATTT+GGG | + | chr1.2:68031251-68031270 | MS.gene68108:CDS | 35.0% | |
| GGTATCAATTGAGTTTGGAA+CGG | + | chr1.2:68031957-68031976 | MS.gene68108:intron | 35.0% | |
| GTGGACAAAAAAATGTTGCA+GGG | + | chr1.2:68032147-68032166 | MS.gene68108:intron | 35.0% | |
| GTTGAGTACAAGATTGAGTT+TGG | - | chr1.2:68030798-68030817 | None:intergenic | 35.0% | |
| TAACTGCTGCATCAACAATA+AGG | - | chr1.2:68032065-68032084 | None:intergenic | 35.0% | |
| TGTGGACAAAAAAATGTTGC+AGG | + | chr1.2:68032146-68032165 | MS.gene68108:intron | 35.0% | |
| TGTTTAGCTGTGTTATCAGT+TGG | + | chr1.2:68030822-68030841 | MS.gene68108:CDS | 35.0% | |
| TTTGAGTAAGGAAATGTCAC+TGG | + | chr1.2:68031465-68031484 | MS.gene68108:CDS | 35.0% | |
| ! | AATCATTGTTGCTTAGGTGT+TGG | + | chr1.2:68032325-68032344 | MS.gene68108:intron | 35.0% |
| ! | ACTGCAACAATTGATTCAGA+AGG | + | chr1.2:68031744-68031763 | MS.gene68108:CDS | 35.0% |
| ! | AGTTCAGAAAGCTATTTCCT+TGG | + | chr1.2:68031488-68031507 | MS.gene68108:CDS | 35.0% |
| ! | ATATATGGATTGCTTGTGTC+AGG | + | chr1.2:68031999-68032018 | MS.gene68108:intron | 35.0% |
| ! | ATGGACTAACAGAAAGTTGT+GGG | + | chr1.2:68031530-68031549 | MS.gene68108:CDS | 35.0% |
| ! | CAACAATTGATTCAGAAGGT+TGG | + | chr1.2:68031748-68031767 | MS.gene68108:CDS | 35.0% |
| ! | CTTTTCTAATCTCAAGTCCA+TGG | - | chr1.2:68030752-68030771 | None:intergenic | 35.0% |
| ! | GTTCAGAAAGCTATTTCCTT+GGG | + | chr1.2:68031489-68031508 | MS.gene68108:CDS | 35.0% |
| ! | TATGGACTAACAGAAAGTTG+TGG | + | chr1.2:68031529-68031548 | MS.gene68108:CDS | 35.0% |
| ! | TGATTTAGTATTGAGAGGGT+TGG | - | chr1.2:68030865-68030884 | None:intergenic | 35.0% |
| ! | TGATTTGTCTAGCCTAAGAA+GGG | + | chr1.2:68031423-68031442 | MS.gene68108:CDS | 35.0% |
| !! | ATTTCCTTGGGTTGAACTAA+GGG | + | chr1.2:68031501-68031520 | MS.gene68108:CDS | 35.0% |
| !! | CATGTCATTCAATTTGTTGC+AGG | + | chr1.2:68032244-68032263 | MS.gene68108:CDS | 35.0% |
| !! | GTTTTATTGACAGTATACCG+AGG | + | chr1.2:68032659-68032678 | MS.gene68108:CDS | 35.0% |
| !! | TATTTCCTTGGGTTGAACTA+AGG | + | chr1.2:68031500-68031519 | MS.gene68108:CDS | 35.0% |
| AAGGAGCTAATCAAGCACAA+AGG | + | chr1.2:68031834-68031853 | MS.gene68108:CDS | 40.0% | |
| ACTGCTGCATCAACAATAAG+GGG | - | chr1.2:68032063-68032082 | None:intergenic | 40.0% | |
| AGAATTGTAGGAACTCCAGT+TGG | - | chr1.2:68030963-68030982 | None:intergenic | 40.0% | |
| AGGAGCTAATCAAGCACAAA+GGG | + | chr1.2:68031835-68031854 | MS.gene68108:CDS | 40.0% | |
| AGGGTTGAAGATGAAGAAAC+TGG | + | chr1.2:68032166-68032185 | MS.gene68108:intron | 40.0% | |
| ATAAGAGTGAAAATAGGCGG+AGG | - | chr1.2:68032101-68032120 | None:intergenic | 40.0% | |
| ATGGAACAAAGCTGTTGCAA+GGG | - | chr1.2:68030733-68030752 | None:intergenic | 40.0% | |
| CACCCTTCTCACTTTCTATA+TGG | - | chr1.2:68032638-68032657 | None:intergenic | 40.0% | |
| CCCTGAAGAGTAAAGTATAG+CGG | - | chr1.2:68031092-68031111 | None:intergenic | 40.0% | |
| CCGCTATACTTTACTCTTCA+GGG | + | chr1.2:68031089-68031108 | MS.gene68108:CDS | 40.0% | |
| CTATAGGAAAACGAGAAAGC+AGG | - | chr1.2:68032553-68032572 | None:intergenic | 40.0% | |
| CTCTCTGTGACTTTCTTATG+TGG | + | chr1.2:68032128-68032147 | MS.gene68108:intron | 40.0% | |
| GAATTGTAGGAACTCCAGTT+GGG | - | chr1.2:68030962-68030981 | None:intergenic | 40.0% | |
| GCTCCATATAGAAAGTGAGA+AGG | + | chr1.2:68032632-68032651 | MS.gene68108:intron | 40.0% | |
| GGACTGATGTTCTTTGGATT+TGG | + | chr1.2:68031250-68031269 | MS.gene68108:CDS | 40.0% | |
| GGAGAGTTATGGTTGAAAAG+CGG | + | chr1.2:68031681-68031700 | MS.gene68108:CDS | 40.0% | |
| GGGTTGAAGATGAAGAAACT+GGG | + | chr1.2:68032167-68032186 | MS.gene68108:intron | 40.0% | |
| GTGAAACATGCTAGCAAAGA+TGG | + | chr1.2:68031397-68031416 | MS.gene68108:CDS | 40.0% | |
| TAAGAGTGAAAATAGGCGGA+GGG | - | chr1.2:68032100-68032119 | None:intergenic | 40.0% | |
| TAGCATGTTTCACCAATGAG+TGG | - | chr1.2:68031390-68031409 | None:intergenic | 40.0% | |
| TGGACTAACAGAAAGTTGTG+GGG | + | chr1.2:68031531-68031550 | MS.gene68108:CDS | 40.0% | |
| TTACACAAATTGGTCCCAAC+TGG | + | chr1.2:68030945-68030964 | MS.gene68108:CDS | 40.0% | |
| TTCACCAATGAGTGGATAAC+TGG | - | chr1.2:68031382-68031401 | None:intergenic | 40.0% | |
| ! | GTCTATGGACTGATGTTCTT+TGG | + | chr1.2:68031244-68031263 | MS.gene68108:CDS | 40.0% |
| ! | GTGATTTGTCTAGCCTAAGA+AGG | + | chr1.2:68031422-68031441 | MS.gene68108:CDS | 40.0% |
| ! | TTGATTCAGAAGGTTGGTTG+AGG | + | chr1.2:68031754-68031773 | MS.gene68108:CDS | 40.0% |
| !! | AATCAAGCACAAAGGGTATC+AGG | + | chr1.2:68031842-68031861 | MS.gene68108:CDS | 40.0% |
| AAGAGTGAAAATAGGCGGAG+GGG | - | chr1.2:68032099-68032118 | None:intergenic | 45.0% | |
| ACCAATGAGTGGATAACTGG+TGG | - | chr1.2:68031379-68031398 | None:intergenic | 45.0% | |
| ACCAATGGCATATGTGGTGA+GGG | + | chr1.2:68032195-68032214 | MS.gene68108:CDS | 45.0% | |
| ACTTTCCATCAGATGTCCAG+AGG | - | chr1.2:68030988-68031007 | None:intergenic | 45.0% | |
| AGAAACTGGGCAGATACCAA+TGG | + | chr1.2:68032180-68032199 | MS.gene68108:CDS | 45.0% | |
| AGAATTGCCACATGTTCCTG+TGG | + | chr1.2:68031051-68031070 | MS.gene68108:CDS | 45.0% | |
| ATCAGCTTTCCACATGCTTC+TGG | - | chr1.2:68031598-68031617 | None:intergenic | 45.0% | |
| ATGAAATCAGGAGCCAAGAG+TGG | - | chr1.2:68032279-68032298 | None:intergenic | 45.0% | |
| CACTCAAGGAAGGAGAGTTA+TGG | + | chr1.2:68031670-68031689 | MS.gene68108:intron | 45.0% | |
| CATAACTCTCCTTCCTTGAG+TGG | - | chr1.2:68031672-68031691 | None:intergenic | 45.0% | |
| CATGGAACAAAGCTGTTGCA+AGG | - | chr1.2:68030734-68030753 | None:intergenic | 45.0% | |
| CCAGCAGAGCAGTTTCATTA+TGG | - | chr1.2:68031164-68031183 | None:intergenic | 45.0% | |
| CCATAATGAAACTGCTCTGC+TGG | + | chr1.2:68031161-68031180 | MS.gene68108:CDS | 45.0% | |
| CTTTACTCTTCAGGGACTAC+TGG | + | chr1.2:68031097-68031116 | MS.gene68108:CDS | 45.0% | |
| GAAACATTGGAATGAAGGCG+AGG | - | chr1.2:68031222-68031241 | None:intergenic | 45.0% | |
| GCAGATACCAATGGCATATG+TGG | + | chr1.2:68032189-68032208 | MS.gene68108:CDS | 45.0% | |
| GCCGCTATACTTTACTCTTC+AGG | + | chr1.2:68031088-68031107 | MS.gene68108:CDS | 45.0% | |
| GCGAAGCAAGTACATGATTC+AGG | + | chr1.2:68030891-68030910 | MS.gene68108:CDS | 45.0% | |
| GGACTAACAGAAAGTTGTGG+GGG | + | chr1.2:68031532-68031551 | MS.gene68108:CDS | 45.0% | |
| GGAGCTAAGAGAAGCAGAAA+TGG | - | chr1.2:68032532-68032551 | None:intergenic | 45.0% | |
| GTTCCTACAATTCTCACCTC+TGG | + | chr1.2:68030969-68030988 | MS.gene68108:intron | 45.0% | |
| TACCAATGGCATATGTGGTG+AGG | + | chr1.2:68032194-68032213 | MS.gene68108:CDS | 45.0% | |
| TGTCCAGAGGTGAGAATTGT+AGG | - | chr1.2:68030975-68030994 | None:intergenic | 45.0% | |
| TTGTCTAGCCTAAGAAGGGT+TGG | + | chr1.2:68031427-68031446 | MS.gene68108:CDS | 45.0% | |
| ! | AAAGCTCATCCAGAAGCATG+TGG | + | chr1.2:68031586-68031605 | MS.gene68108:CDS | 45.0% |
| ! | TAACTCTTCTGGTGCTGAGA+TGG | - | chr1.2:68030928-68030947 | None:intergenic | 45.0% |
| !! | CATTCAATTTGTTGCAGGCC+AGG | + | chr1.2:68032249-68032268 | MS.gene68108:CDS | 45.0% |
| !! | CTTGCAACAGCTTTGTTCCA+TGG | + | chr1.2:68030732-68030751 | MS.gene68108:CDS | 45.0% |
| !! | GGATTTGGGTTGTTGTGTGT+TGG | + | chr1.2:68031265-68031284 | MS.gene68108:CDS | 45.0% |
| AACTCTCCTTCCTTGAGTGG+AGG | - | chr1.2:68031669-68031688 | None:intergenic | 50.0% | |
| AGCACAGATTCCAGTTCTGC+AGG | - | chr1.2:68032030-68032049 | None:intergenic | 50.0% | |
| CTTCTCGATAGCGACAAGCA+TGG | - | chr1.2:68031329-68031348 | None:intergenic | 50.0% | |
| GATTGCTCCACAGGAACATG+TGG | - | chr1.2:68031061-68031080 | None:intergenic | 50.0% | |
| GCCACCAGTTATCCACTCAT+TGG | + | chr1.2:68031375-68031394 | MS.gene68108:CDS | 50.0% | |
| GGGACTACTGGAGTAAGCAA+AGG | + | chr1.2:68031109-68031128 | MS.gene68108:CDS | 50.0% | |
| TCTCACCTCTGGACATCTGA+TGG | + | chr1.2:68030980-68030999 | MS.gene68108:intron | 50.0% | |
| TGGTTGAGGACAGGTGATCT+TGG | + | chr1.2:68031768-68031787 | MS.gene68108:CDS | 50.0% | |
| ! | AGGTGCTGCACCTTTGAGTA+AGG | + | chr1.2:68031453-68031472 | MS.gene68108:CDS | 50.0% |
| ! | TCAGAAGGTTGGTTGAGGAC+AGG | + | chr1.2:68031759-68031778 | MS.gene68108:CDS | 50.0% |
| ! | TGTGGGGGAGCTACGTTTTT+CGG | + | chr1.2:68031547-68031566 | MS.gene68108:CDS | 50.0% |
| !! | AGTATTGAGAGGGTTGGCTG+TGG | - | chr1.2:68030859-68030878 | None:intergenic | 50.0% |
| !! | CAATTTGTTGCAGGCCAGGT+AGG | + | chr1.2:68032253-68032272 | MS.gene68108:intron | 50.0% |
| !! | GTTGAACTAAGGGCGGGTTA+TGG | + | chr1.2:68031511-68031530 | MS.gene68108:CDS | 50.0% |
| !! | TCCTTGGGTTGAACTAAGGG+CGG | + | chr1.2:68031504-68031523 | MS.gene68108:CDS | 50.0% |
| AATAGGCGGAGGGGATCGTA+CGG | - | chr1.2:68032090-68032109 | None:intergenic | 55.0% | |
| AGTATACCGAGGTCAGCTGC+TGG | + | chr1.2:68032670-68032689 | MS.gene68108:CDS | 55.0% | |
| ATCTTGCCAGCAGCTGACCT+CGG | - | chr1.2:68032679-68032698 | None:intergenic | 55.0% | |
| CACCTGAGCCAACCCTTCTT+AGG | - | chr1.2:68031438-68031457 | None:intergenic | 55.0% | |
| CCTTCCTTGAGTGGAGGCAA+AGG | - | chr1.2:68031663-68031682 | None:intergenic | 55.0% | |
| CCTTTGCCTCCACTCAAGGA+AGG | + | chr1.2:68031660-68031679 | MS.gene68108:intron | 55.0% | |
| GAAGCCTTTGCCTCCACTCA+AGG | + | chr1.2:68031656-68031675 | MS.gene68108:intron | 55.0% | |
| GCAGTGTCTGATTGCTCCAC+AGG | - | chr1.2:68031070-68031089 | None:intergenic | 55.0% | |
| GCCCTCACCACATATGCCAT+TGG | - | chr1.2:68032199-68032218 | None:intergenic | 55.0% | |
| TCAGGTAGCTCCTGCAGAAC+TGG | + | chr1.2:68032017-68032036 | MS.gene68108:intron | 55.0% | |
| TGGATAACTGGTGGCACTGC+TGG | - | chr1.2:68031370-68031389 | None:intergenic | 55.0% | |
| ! | GTGGGGGAGCTACGTTTTTC+GGG | + | chr1.2:68031548-68031567 | MS.gene68108:CDS | 55.0% |
| !! | AGCCTAAGAAGGGTTGGCTC+AGG | + | chr1.2:68031433-68031452 | MS.gene68108:CDS | 55.0% |
| !! | CCTTGGGTTGAACTAAGGGC+GGG | + | chr1.2:68031505-68031524 | MS.gene68108:CDS | 55.0% |
| !!! | GGGAGCTACGTTTTTCGGGT+CGG | + | chr1.2:68031552-68031571 | MS.gene68108:CDS | 55.0% |
| CCCGCCCTTAGTTCAACCCA+AGG | - | chr1.2:68031508-68031527 | None:intergenic | 60.0% | |
| GCATATGTGGTGAGGGCAGC+TGG | + | chr1.2:68032202-68032221 | MS.gene68108:CDS | 60.0% | |
| CAGGCCAGGTAGGCCACTCT+TGG | + | chr1.2:68032263-68032282 | MS.gene68108:intron | 65.0% | |
| GGAGCCAAGAGTGGCCTACC+TGG | - | chr1.2:68032270-68032289 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 68030695 | 68032753 | 68030695 | ID=MS.gene68108 |
| chr1.2 | mRNA | 68030695 | 68032753 | 68030695 | ID=MS.gene68108.t1;Parent=MS.gene68108 |
| chr1.2 | exon | 68030695 | 68030968 | 68030695 | ID=MS.gene68108.t1.exon1;Parent=MS.gene68108.t1 |
| chr1.2 | CDS | 68030695 | 68030968 | 68030695 | ID=cds.MS.gene68108.t1;Parent=MS.gene68108.t1 |
| chr1.2 | exon | 68031007 | 68031636 | 68031007 | ID=MS.gene68108.t1.exon2;Parent=MS.gene68108.t1 |
| chr1.2 | CDS | 68031007 | 68031636 | 68031007 | ID=cds.MS.gene68108.t1;Parent=MS.gene68108.t1 |
| chr1.2 | exon | 68031678 | 68031863 | 68031678 | ID=MS.gene68108.t1.exon3;Parent=MS.gene68108.t1 |
| chr1.2 | CDS | 68031678 | 68031863 | 68031678 | ID=cds.MS.gene68108.t1;Parent=MS.gene68108.t1 |
| chr1.2 | exon | 68032021 | 68032088 | 68032021 | ID=MS.gene68108.t1.exon4;Parent=MS.gene68108.t1 |
| chr1.2 | CDS | 68032021 | 68032088 | 68032021 | ID=cds.MS.gene68108.t1;Parent=MS.gene68108.t1 |
| chr1.2 | exon | 68032168 | 68032270 | 68032168 | ID=MS.gene68108.t1.exon5;Parent=MS.gene68108.t1 |
| chr1.2 | CDS | 68032168 | 68032270 | 68032168 | ID=cds.MS.gene68108.t1;Parent=MS.gene68108.t1 |
| chr1.2 | exon | 68032643 | 68032753 | 68032643 | ID=MS.gene68108.t1.exon6;Parent=MS.gene68108.t1 |
| chr1.2 | CDS | 68032643 | 68032753 | 68032643 | ID=cds.MS.gene68108.t1;Parent=MS.gene68108.t1 |
| Gene Sequence |
| Protein sequence |
