Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68441.t1 | AES61942.1 | 78.9 | 190 | 22 | 1 | 1 | 190 | 17 | 188 | 4.70E-72 | 280.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68441.t1 | Q9D1C9 | 33.8 | 151 | 83 | 3 | 43 | 190 | 144 | 280 | 1.2e-12 | 74.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68441.t1 | G7I416 | 78.9 | 190 | 22 | 1 | 1 | 190 | 17 | 188 | 3.4e-72 | 280.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049254 | MS.gene68441 | 0.806279 | 8.89E-50 | -1.69E-46 |
MS.gene050156 | MS.gene68441 | 0.801372 | 9.29E-49 | -1.69E-46 |
MS.gene050201 | MS.gene68441 | 0.826065 | 3.33E-54 | -1.69E-46 |
MS.gene051247 | MS.gene68441 | 0.80024 | 1.58E-48 | -1.69E-46 |
MS.gene051594 | MS.gene68441 | 0.806661 | 7.38E-50 | -1.69E-46 |
MS.gene051719 | MS.gene68441 | 0.812839 | 3.46E-51 | -1.69E-46 |
MS.gene051720 | MS.gene68441 | 0.806489 | 8.03E-50 | -1.69E-46 |
MS.gene052584 | MS.gene68441 | 0.813497 | 2.48E-51 | -1.69E-46 |
MS.gene052773 | MS.gene68441 | 0.803006 | 4.28E-49 | -1.69E-46 |
MS.gene053883 | MS.gene68441 | 0.807921 | 3.99E-50 | -1.69E-46 |
MS.gene05423 | MS.gene68441 | 0.811738 | 6.03E-51 | -1.69E-46 |
MS.gene054291 | MS.gene68441 | -0.809369 | 1.96E-50 | -1.69E-46 |
MS.gene055818 | MS.gene68441 | 0.80249 | 5.47E-49 | -1.69E-46 |
MS.gene059458 | MS.gene68441 | 0.803525 | 3.34E-49 | -1.69E-46 |
MS.gene059459 | MS.gene68441 | 0.813252 | 2.81E-51 | -1.69E-46 |
MS.gene059460 | MS.gene68441 | 0.812923 | 3.32E-51 | -1.69E-46 |
MS.gene059625 | MS.gene68441 | 0.80587 | 1.08E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68441.t1 | MTR_1g090650 | 78.947 | 190 | 22 | 1 | 1 | 190 | 17 | 188 | 3.03e-105 | 300 |
MS.gene68441.t1 | MTR_4g051625 | 80.460 | 174 | 34 | 0 | 17 | 190 | 159 | 332 | 1.44e-95 | 281 |
MS.gene68441.t1 | MTR_4g051625 | 80.460 | 174 | 34 | 0 | 17 | 190 | 204 | 377 | 2.48e-95 | 282 |
MS.gene68441.t1 | MTR_8g085800 | 79.191 | 173 | 36 | 0 | 18 | 190 | 162 | 334 | 1.30e-93 | 276 |
MS.gene68441.t1 | MTR_8g085830 | 57.576 | 99 | 15 | 2 | 92 | 190 | 2 | 73 | 2.36e-28 | 101 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68441.t1 | AT5G38720 | 61.745 | 149 | 56 | 1 | 43 | 190 | 158 | 306 | 2.74e-62 | 195 |
MS.gene68441.t1 | AT5G38720 | 61.745 | 149 | 56 | 1 | 43 | 190 | 165 | 313 | 3.64e-62 | 195 |
MS.gene68441.t1 | AT5G38720 | 63.448 | 145 | 52 | 1 | 47 | 190 | 181 | 325 | 1.79e-61 | 194 |
Find 37 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAAACTACAGAATGGATTA+TGG | 0.261065 | 1.1:+66117006 | MS.gene68441:intron |
TGCTTTGCTTGCAGAAATAA+TGG | 0.261678 | 1.1:+66120397 | MS.gene68441:intron |
GGAGACGATGACTGCTTAAT+TGG | 0.267135 | 1.1:+66116653 | MS.gene68441:CDS |
GTTGATTTACAGCACCAAAT+TGG | 0.304593 | 1.1:+66116212 | MS.gene68441:CDS |
GCTATCAACATCATTTAATA+AGG | 0.328209 | 1.1:-66120488 | None:intergenic |
TGCAGAAATAATGGAATTGC+AGG | 0.332786 | 1.1:+66120406 | MS.gene68441:intron |
TATCCATGAACTCACCAATT+TGG | 0.333336 | 1.1:-66116226 | None:intergenic |
CCAACCTCAGTCTACTTTGA+TGG | 0.365142 | 1.1:-66117033 | None:intergenic |
AGCCGCTGCGGAGAATAAAT+TGG | 0.366514 | 1.1:+66119287 | MS.gene68441:CDS |
CAAACTACAGAATGGATTAT+GGG | 0.411048 | 1.1:+66117007 | MS.gene68441:intron |
GAATTTCACATCATTTCCTC+TGG | 0.416937 | 1.1:+66116632 | MS.gene68441:CDS |
TCCATCCACCTTCTGTGGCA+AGG | 0.448107 | 1.1:-66119188 | None:intergenic |
TCTGAAAGTGGTATTGTTGT+GGG | 0.455255 | 1.1:+66119252 | MS.gene68441:CDS |
CTCTGAAAGTGGTATTGTTG+TGG | 0.473722 | 1.1:+66119251 | MS.gene68441:CDS |
GGAATTGCAGGGAAAATTTG+AGG | 0.483609 | 1.1:+66120418 | MS.gene68441:CDS |
CCATCCACCTTCTGTGGCAA+GGG | 0.488450 | 1.1:-66119187 | None:intergenic |
CCATCAAAGTAGACTGAGGT+TGG | 0.508105 | 1.1:+66117033 | MS.gene68441:CDS |
GAAGCCCTTGCCACAGAAGG+TGG | 0.529013 | 1.1:+66119183 | MS.gene68441:CDS |
AAAAGAGAAGCTCAGAGAAA+CGG | 0.534751 | 1.1:+66119357 | MS.gene68441:CDS |
ATATAAGAAGAAAACAAGAA+AGG | 0.536232 | 1.1:+66116565 | MS.gene68441:CDS |
CTCAGTTGCTCAAGCCGCTG+CGG | 0.537973 | 1.1:+66119275 | MS.gene68441:CDS |
AAAACAACTGACTCTGAAAG+TGG | 0.539464 | 1.1:+66119240 | MS.gene68441:CDS |
CCCTTGCCACAGAAGGTGGA+TGG | 0.565775 | 1.1:+66119187 | MS.gene68441:CDS |
TCAAAGTAGACTGAGGTTGG+AGG | 0.578314 | 1.1:+66117036 | MS.gene68441:CDS |
AAAGAAGCCCTTGCCACAGA+AGG | 0.581783 | 1.1:+66119180 | MS.gene68441:CDS |
GACGGTAGTTGCACACCACA+AGG | 0.582197 | 1.1:+66119209 | MS.gene68441:CDS |
TACCGTCCATCCACCTTCTG+TGG | 0.583619 | 1.1:-66119193 | None:intergenic |
CGACTATGTAACTGCTTACG+AGG | 0.591755 | 1.1:+66117078 | MS.gene68441:CDS |
TGCCACAGAAGGTGGATGGA+CGG | 0.606359 | 1.1:+66119191 | MS.gene68441:CDS |
GGCCAATTTATTCTCCGCAG+CGG | 0.614569 | 1.1:-66119289 | None:intergenic |
TAGTTGCACACCACAAGGGT+AGG | 0.618932 | 1.1:+66119214 | MS.gene68441:CDS |
TAAGAAGAAAACAAGAAAGG+AGG | 0.631645 | 1.1:+66116568 | MS.gene68441:CDS |
ATTGCAGGGAAAATTTGAGG+AGG | 0.657835 | 1.1:+66120421 | MS.gene68441:CDS |
TAAGCAGTCATCGTCTCCAG+AGG | 0.666489 | 1.1:-66116648 | None:intergenic |
GCAGAAATAATGGAATTGCA+GGG | 0.670645 | 1.1:+66120407 | MS.gene68441:intron |
ACGGTAGTTGCACACCACAA+GGG | 0.714687 | 1.1:+66119210 | MS.gene68441:CDS |
GATGCCATCAAAGTAGACTG+AGG | 0.743254 | 1.1:+66117029 | MS.gene68441:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GTAAATTCATATAATTTTAA+CGG | - | chr1.1:66120260-66120279 | None:intergenic | 10.0% |
!!! | ACAACTTTTATGATAAAAAA+TGG | - | chr1.1:66119439-66119458 | None:intergenic | 15.0% |
!!! | TTATTTTAAACAAACATCAT+TGG | - | chr1.1:66119496-66119515 | None:intergenic | 15.0% |
!! | AAAAAGAAACTTAAAGAAGT+TGG | + | chr1.1:66119312-66119331 | MS.gene68441:CDS | 20.0% |
!! | AACTTCTATCTAATATTTGT+CGG | + | chr1.1:66118082-66118101 | MS.gene68441:intron | 20.0% |
!! | ACTTTGTATAAGTATAAAAC+TGG | + | chr1.1:66116253-66116272 | MS.gene68441:intron | 20.0% |
!! | AGACAATTTATAGATTTCTT+TGG | - | chr1.1:66118393-66118412 | None:intergenic | 20.0% |
!! | ATATAAGAAGAAAACAAGAA+AGG | + | chr1.1:66116565-66116584 | MS.gene68441:CDS | 20.0% |
!! | ATCTATCTATACCTTTAATT+AGG | - | chr1.1:66119676-66119695 | None:intergenic | 20.0% |
!! | ATTTCACAATAATACAACAA+TGG | - | chr1.1:66116477-66116496 | None:intergenic | 20.0% |
!! | TGGATCAAATTATAGAAAAA+TGG | + | chr1.1:66118922-66118941 | MS.gene68441:intron | 20.0% |
!! | TGTTTGATGAAGAAAAAAAA+GGG | - | chr1.1:66120298-66120317 | None:intergenic | 20.0% |
!! | TTAACATAGAAAATGTTGTA+AGG | - | chr1.1:66116789-66116808 | None:intergenic | 20.0% |
!! | TTAATCATGTATCAAAGATT+GGG | - | chr1.1:66118259-66118278 | None:intergenic | 20.0% |
!! | TTACCTAGGATATAAAAATA+TGG | - | chr1.1:66119409-66119428 | None:intergenic | 20.0% |
!! | TTCTGCTTATTTATTGAATA+TGG | + | chr1.1:66116285-66116304 | MS.gene68441:intron | 20.0% |
!!! | AACTTCTTTAAGTTTCTTTT+TGG | - | chr1.1:66119313-66119332 | None:intergenic | 20.0% |
!!! | AATATTAGATAGAAGTTTTG+CGG | - | chr1.1:66118079-66118098 | None:intergenic | 20.0% |
!!! | ACTATATAGAAATAATGGAA+AGG | - | chr1.1:66119050-66119069 | None:intergenic | 20.0% |
!!! | AGGATATTAAGTTTTGTAAA+GGG | - | chr1.1:66119014-66119033 | None:intergenic | 20.0% |
!!! | CGTTTCTTTTAGAAATATTA+GGG | + | chr1.1:66119607-66119626 | MS.gene68441:intron | 20.0% |
!!! | TAATTTTCATTCATAAGAGA+GGG | + | chr1.1:66117375-66117394 | MS.gene68441:intron | 20.0% |
!!! | TGAAGTTATCTTTGTTTTTT+AGG | + | chr1.1:66116530-66116549 | MS.gene68441:intron | 20.0% |
!!! | TTAATAAGGTCTAAATTTTC+TGG | - | chr1.1:66120477-66120496 | None:intergenic | 20.0% |
! | AAAACAAAGATAACTTCATG+AGG | - | chr1.1:66116528-66116547 | None:intergenic | 25.0% |
! | AACTAAATATCTTTGTTCCT+AGG | + | chr1.1:66120130-66120149 | MS.gene68441:intron | 25.0% |
! | AACTTATAATTCTGTGTCTA+TGG | - | chr1.1:66117629-66117648 | None:intergenic | 25.0% |
! | ACCAAAATAAGTAACAAATG+AGG | - | chr1.1:66119118-66119137 | None:intergenic | 25.0% |
! | AGAGTTTCTTAGTAAGTTAT+AGG | - | chr1.1:66118020-66118039 | None:intergenic | 25.0% |
! | ATAAATCTGTACAAAGTACA+CGG | - | chr1.1:66116931-66116950 | None:intergenic | 25.0% |
! | ATAGAAAATGTTGTAAGGTA+AGG | - | chr1.1:66116784-66116803 | None:intergenic | 25.0% |
! | ATCAAAGTTATAGTTGCATA+AGG | + | chr1.1:66117411-66117430 | MS.gene68441:intron | 25.0% |
! | ATCTAAATTTACTGGATGAT+GGG | - | chr1.1:66120164-66120183 | None:intergenic | 25.0% |
! | ATGATTGTAATCTATCTAGA+TGG | + | chr1.1:66119872-66119891 | MS.gene68441:intron | 25.0% |
! | ATTTATGATAAAGAACATGG+AGG | + | chr1.1:66117837-66117856 | MS.gene68441:intron | 25.0% |
! | CAAGTGATAAACCTAATTAA+AGG | + | chr1.1:66119662-66119681 | MS.gene68441:intron | 25.0% |
! | CCAAAATAAGTAACAAATGA+GGG | - | chr1.1:66119117-66119136 | None:intergenic | 25.0% |
! | CTCATTTATGATAAAGAACA+TGG | + | chr1.1:66117834-66117853 | MS.gene68441:intron | 25.0% |
! | GAGAGACTATATAGAAATAA+TGG | - | chr1.1:66119055-66119074 | None:intergenic | 25.0% |
! | GAGTTTCTTAGTAAGTTATA+GGG | - | chr1.1:66118019-66118038 | None:intergenic | 25.0% |
! | GTGTTTGATGAAGAAAAAAA+AGG | - | chr1.1:66120299-66120318 | None:intergenic | 25.0% |
! | GTTAATCATGTATCAAAGAT+TGG | - | chr1.1:66118260-66118279 | None:intergenic | 25.0% |
! | GTTTATCAAATGGATATGTA+TGG | - | chr1.1:66116762-66116781 | None:intergenic | 25.0% |
! | TAATCATGTATCAAAGATTG+GGG | - | chr1.1:66118258-66118277 | None:intergenic | 25.0% |
! | TAGTATACTATGTATTTGAG+AGG | + | chr1.1:66118965-66118984 | MS.gene68441:intron | 25.0% |
! | TATTATCCCCACTAAAATAA+GGG | - | chr1.1:66117233-66117252 | None:intergenic | 25.0% |
! | TCTATATTTATCGTCATACA+TGG | + | chr1.1:66116960-66116979 | MS.gene68441:intron | 25.0% |
! | TCTATTCTTAGTTTCTTCAT+AGG | + | chr1.1:66120009-66120028 | MS.gene68441:intron | 25.0% |
! | TGATTGAGAAGAATTAAGAT+TGG | - | chr1.1:66118705-66118724 | None:intergenic | 25.0% |
! | TTATTATCCCCACTAAAATA+AGG | - | chr1.1:66117234-66117253 | None:intergenic | 25.0% |
! | TTCATGAAATGATTGTTATC+TGG | + | chr1.1:66120222-66120241 | MS.gene68441:intron | 25.0% |
! | TTTATGATAAAGAACATGGA+GGG | + | chr1.1:66117838-66117857 | MS.gene68441:intron | 25.0% |
!! | AAAATCATAATGTTGCTTAG+GGG | + | chr1.1:66119520-66119539 | MS.gene68441:intron | 25.0% |
!! | AGAAAATCATAATGTTGCTT+AGG | + | chr1.1:66119518-66119537 | MS.gene68441:intron | 25.0% |
!! | ATATTAGATAGAAGTTTTGC+GGG | - | chr1.1:66118078-66118097 | None:intergenic | 25.0% |
!! | CAGCATTAATACAAATTTTG+AGG | + | chr1.1:66116714-66116733 | MS.gene68441:intron | 25.0% |
!! | GAAAATCATAATGTTGCTTA+GGG | + | chr1.1:66119519-66119538 | MS.gene68441:intron | 25.0% |
!! | GTAATTTTCATTCATAAGAG+AGG | + | chr1.1:66117374-66117393 | MS.gene68441:intron | 25.0% |
!!! | AACATCATTGGTTTAAATTC+AGG | - | chr1.1:66119484-66119503 | None:intergenic | 25.0% |
!!! | ATATTAAGTTTTGTAAAGGG+CGG | - | chr1.1:66119011-66119030 | None:intergenic | 25.0% |
!!! | CAAAATTTTGAAACAATGTC+TGG | - | chr1.1:66117171-66117190 | None:intergenic | 25.0% |
!!! | CCTTTTTTGAAAAAGCATTA+GGG | + | chr1.1:66120045-66120064 | MS.gene68441:intron | 25.0% |
!!! | GAGGATATTAAGTTTTGTAA+AGG | - | chr1.1:66119015-66119034 | None:intergenic | 25.0% |
!!! | GCGTTTCTTTTAGAAATATT+AGG | + | chr1.1:66119606-66119625 | MS.gene68441:intron | 25.0% |
!!! | GTTATCTTTGTTTTTTAGGT+AGG | + | chr1.1:66116534-66116553 | MS.gene68441:intron | 25.0% |
!!! | TCAACTGTCCTTTTATTTTT+AGG | + | chr1.1:66117955-66117974 | MS.gene68441:intron | 25.0% |
!!! | TCCTTTTTTGAAAAAGCATT+AGG | + | chr1.1:66120044-66120063 | MS.gene68441:intron | 25.0% |
!!! | TTGCCATATTTTTATATCCT+AGG | + | chr1.1:66119403-66119422 | MS.gene68441:intron | 25.0% |
AAAATAAAAGGACAGTTGAG+AGG | - | chr1.1:66117954-66117973 | None:intergenic | 30.0% | |
AAAATGGTTAAGCATTACCT+AGG | - | chr1.1:66119423-66119442 | None:intergenic | 30.0% | |
AAATAAAAGGACAGTTGAGA+GGG | - | chr1.1:66117953-66117972 | None:intergenic | 30.0% | |
AAATCAAACAAGCTAATGGT+AGG | - | chr1.1:66118659-66118678 | None:intergenic | 30.0% | |
AAGTGAGTTAATAAGTCAGT+TGG | - | chr1.1:66119089-66119108 | None:intergenic | 30.0% | |
AATCAAACAAGCTAATGGTA+GGG | - | chr1.1:66118658-66118677 | None:intergenic | 30.0% | |
ACAACAATTTGTGAATGCAA+TGG | - | chr1.1:66118737-66118756 | None:intergenic | 30.0% | |
AGAAGAATTAAGATTGGAGA+TGG | - | chr1.1:66118699-66118718 | None:intergenic | 30.0% | |
AGACAGAGTAAAAACAATGA+TGG | - | chr1.1:66116323-66116342 | None:intergenic | 30.0% | |
AGATTACAATCATTATGAGC+TGG | - | chr1.1:66119865-66119884 | None:intergenic | 30.0% | |
AGCAAAATCAAACAAGCTAA+TGG | - | chr1.1:66118663-66118682 | None:intergenic | 30.0% | |
AGGGTTATCTGACTATTATT+AGG | - | chr1.1:66117214-66117233 | None:intergenic | 30.0% | |
AGTGAGTTAATAAGTCAGTT+GGG | - | chr1.1:66119088-66119107 | None:intergenic | 30.0% | |
ATTACTTAGCAACTGATTGA+CGG | + | chr1.1:66119780-66119799 | MS.gene68441:intron | 30.0% | |
CAGATATCAAATTACTTCTC+AGG | + | chr1.1:66118496-66118515 | MS.gene68441:intron | 30.0% | |
CATCCTTTAAACAAAAACGT+AGG | + | chr1.1:66117132-66117151 | MS.gene68441:intron | 30.0% | |
CATCTAAATTTACTGGATGA+TGG | - | chr1.1:66120165-66120184 | None:intergenic | 30.0% | |
CGAGATATATGAATACATCT+AGG | - | chr1.1:66117595-66117614 | None:intergenic | 30.0% | |
CTTTAAACAAAAACGTAGGT+TGG | + | chr1.1:66117136-66117155 | MS.gene68441:intron | 30.0% | |
GAATTTCACAACCTCAAAAT+TGG | + | chr1.1:66118874-66118893 | MS.gene68441:intron | 30.0% | |
GCATGTTGCCTAAAAATAAA+AGG | - | chr1.1:66117966-66117985 | None:intergenic | 30.0% | |
GTAAGGTAAGGTTTATCAAA+TGG | - | chr1.1:66116772-66116791 | None:intergenic | 30.0% | |
GTGTAGTTATTTATACTGCT+CGG | + | chr1.1:66119807-66119826 | MS.gene68441:intron | 30.0% | |
TAAATCTGTACAAAGTACAC+GGG | - | chr1.1:66116930-66116949 | None:intergenic | 30.0% | |
TAAGAAGAAAACAAGAAAGG+AGG | + | chr1.1:66116568-66116587 | MS.gene68441:CDS | 30.0% | |
TACACATGCATCTAATAATG+TGG | + | chr1.1:66118143-66118162 | MS.gene68441:intron | 30.0% | |
TAGTGTTGTGAATTATGAAG+TGG | + | chr1.1:66117533-66117552 | MS.gene68441:intron | 30.0% | |
TGAAATGATTGTTATCTGGT+TGG | + | chr1.1:66120226-66120245 | MS.gene68441:intron | 30.0% | |
TTACGAGGAAAAATTAGAAG+AGG | + | chr1.1:66117093-66117112 | MS.gene68441:CDS | 30.0% | |
TTGACCAAAAAACAATTGCA+TGG | - | chr1.1:66119143-66119162 | None:intergenic | 30.0% | |
TTGAGTTAAGATTGCATTCT+TGG | + | chr1.1:66117708-66117727 | MS.gene68441:intron | 30.0% | |
TTTAGTGGGGATAATAATCA+TGG | + | chr1.1:66117237-66117256 | MS.gene68441:intron | 30.0% | |
! | ATATCAAAGCTCCAATTTTG+AGG | - | chr1.1:66118888-66118907 | None:intergenic | 30.0% |
! | CTATAAGATCTTTTCCATGT+TGG | - | chr1.1:66119574-66119593 | None:intergenic | 30.0% |
! | TGGAATAATGTTTTCAGCAA+AGG | - | chr1.1:66118229-66118248 | None:intergenic | 30.0% |
!! | ACTCATTTTAGAAGATACAG+GGG | - | chr1.1:66117912-66117931 | None:intergenic | 30.0% |
!! | CAAACTACAGAATGGATTAT+GGG | + | chr1.1:66117007-66117026 | MS.gene68441:intron | 30.0% |
!! | CAACCTACGTTTTTGTTTAA+AGG | - | chr1.1:66117138-66117157 | None:intergenic | 30.0% |
!! | CCCTCATTTGTTACTTATTT+TGG | + | chr1.1:66119114-66119133 | MS.gene68441:intron | 30.0% |
!! | GACTCATTTTAGAAGATACA+GGG | - | chr1.1:66117913-66117932 | None:intergenic | 30.0% |
!! | TCAAACTACAGAATGGATTA+TGG | + | chr1.1:66117006-66117025 | MS.gene68441:intron | 30.0% |
!! | TGACTCATTTTAGAAGATAC+AGG | - | chr1.1:66117914-66117933 | None:intergenic | 30.0% |
!! | TGGAAAATGAACTTGTTAAG+TGG | - | chr1.1:66119947-66119966 | None:intergenic | 30.0% |
!!! | AATTGTTTTTTGGTCAATGC+AGG | + | chr1.1:66119146-66119165 | MS.gene68441:intron | 30.0% |
!!! | AGATAACCCTTATTTTAGTG+GGG | + | chr1.1:66117224-66117243 | MS.gene68441:intron | 30.0% |
!!! | CAGATAACCCTTATTTTAGT+GGG | + | chr1.1:66117223-66117242 | MS.gene68441:intron | 30.0% |
!!! | CCCTAATGCTTTTTCAAAAA+AGG | - | chr1.1:66120048-66120067 | None:intergenic | 30.0% |
!!! | GTTTCCATGCAATTGTTTTT+TGG | + | chr1.1:66119136-66119155 | MS.gene68441:intron | 30.0% |
!!! | TAAGCACTTTTGAGATTGAT+TGG | + | chr1.1:66116393-66116412 | MS.gene68441:intron | 30.0% |
!!! | TCAGATAACCCTTATTTTAG+TGG | + | chr1.1:66117222-66117241 | MS.gene68441:intron | 30.0% |
!!! | TCATTGTTTTTACTCTGTCT+TGG | + | chr1.1:66116323-66116342 | MS.gene68441:intron | 30.0% |
AAAAGAGAAGCTCAGAGAAA+CGG | + | chr1.1:66119357-66119376 | MS.gene68441:CDS | 35.0% | |
AATGGAAAGGAGAGACTAAA+GGG | - | chr1.1:66119037-66119056 | None:intergenic | 35.0% | |
ACATGGTATATTGTCTGACT+GGG | + | chr1.1:66116977-66116996 | MS.gene68441:intron | 35.0% | |
AGTTTCTTCATAGGTGCATT+AGG | + | chr1.1:66120018-66120037 | MS.gene68441:intron | 35.0% | |
ATACAGATGAGAGCCAATTA+TGG | + | chr1.1:66118284-66118303 | MS.gene68441:intron | 35.0% | |
ATGATTGTTATCTGGTTGGT+TGG | + | chr1.1:66120230-66120249 | MS.gene68441:intron | 35.0% | |
CATCAAAATTTGCACCAACA+TGG | + | chr1.1:66119557-66119576 | MS.gene68441:intron | 35.0% | |
CTGAGATAGTAGAAGAAAGA+AGG | - | chr1.1:66117988-66118007 | None:intergenic | 35.0% | |
GAATGAACAAGCAAAGAATG+TGG | - | chr1.1:66119967-66119986 | None:intergenic | 35.0% | |
GAATTTCACATCATTTCCTC+TGG | + | chr1.1:66116632-66116651 | MS.gene68441:CDS | 35.0% | |
GCTTGTTCATTCTCTATTCT+CGG | + | chr1.1:66119975-66119994 | MS.gene68441:intron | 35.0% | |
GGAATACTCAAACTACAGAA+TGG | + | chr1.1:66116999-66117018 | MS.gene68441:intron | 35.0% | |
GTCATATCCAAATGATATGC+AGG | - | chr1.1:66117670-66117689 | None:intergenic | 35.0% | |
GTGTGAAAAGGAAGAACAAA+AGG | - | chr1.1:66118608-66118627 | None:intergenic | 35.0% | |
GTTTCTTCATAGGTGCATTA+GGG | + | chr1.1:66120019-66120038 | MS.gene68441:intron | 35.0% | |
TAATGGAAAGGAGAGACTAA+AGG | - | chr1.1:66119038-66119057 | None:intergenic | 35.0% | |
TACATGGTATATTGTCTGAC+TGG | + | chr1.1:66116976-66116995 | MS.gene68441:intron | 35.0% | |
TATCCATGAACTCACCAATT+TGG | - | chr1.1:66116229-66116248 | None:intergenic | 35.0% | |
TCTGAAAGTGGTATTGTTGT+GGG | + | chr1.1:66119252-66119271 | MS.gene68441:CDS | 35.0% | |
TCTTTCAACCTGTTGAGAAT+TGG | + | chr1.1:66116893-66116912 | MS.gene68441:intron | 35.0% | |
TGATGTTCCTGCATATCATT+TGG | + | chr1.1:66117660-66117679 | MS.gene68441:intron | 35.0% | |
TGCTTTGCTTGCAGAAATAA+TGG | + | chr1.1:66120397-66120416 | MS.gene68441:intron | 35.0% | |
TTCATAGCCATTGAACAAGT+AGG | - | chr1.1:66117339-66117358 | None:intergenic | 35.0% | |
TTGCATACCTACTTGTTCAA+TGG | + | chr1.1:66117329-66117348 | MS.gene68441:intron | 35.0% | |
! | AAAACAACTGACTCTGAAAG+TGG | + | chr1.1:66119240-66119259 | MS.gene68441:CDS | 35.0% |
! | AGTGGTATATTTTCAGCAAC+AGG | + | chr1.1:66118444-66118463 | MS.gene68441:intron | 35.0% |
! | ATTCTGTGTCTATGGCTTTA+CGG | - | chr1.1:66117621-66117640 | None:intergenic | 35.0% |
! | CATGTTGGTGCAAATTTTGA+TGG | - | chr1.1:66119559-66119578 | None:intergenic | 35.0% |
! | GAGCTTTGATATCAGTTGAT+AGG | + | chr1.1:66118896-66118915 | MS.gene68441:intron | 35.0% |
! | GCAGAAATAATGGAATTGCA+GGG | + | chr1.1:66120407-66120426 | MS.gene68441:intron | 35.0% |
! | GTTGATTTACAGCACCAAAT+TGG | + | chr1.1:66116212-66116231 | MS.gene68441:CDS | 35.0% |
! | TGCAGAAATAATGGAATTGC+AGG | + | chr1.1:66120406-66120425 | MS.gene68441:intron | 35.0% |
!! | ATTGGCTCTCATCTGTATTT+TGG | - | chr1.1:66118282-66118301 | None:intergenic | 35.0% |
!! | TGATATCAGTTGATAGGAAC+TGG | + | chr1.1:66118902-66118921 | MS.gene68441:intron | 35.0% |
!!! | GAGCTTCTCTTTTTTGAAAG+TGG | - | chr1.1:66119350-66119369 | None:intergenic | 35.0% |
AAAGAAAGTAGCAGAGCAAC+TGG | - | chr1.1:66118827-66118846 | None:intergenic | 40.0% | |
AACTACCATACCGCACAAAT+AGG | - | chr1.1:66117499-66117518 | None:intergenic | 40.0% | |
AAGAAAGTAGCAGAGCAACT+GGG | - | chr1.1:66118826-66118845 | None:intergenic | 40.0% | |
ACAGAGCTTTCCTATTTGTG+CGG | + | chr1.1:66117486-66117505 | MS.gene68441:intron | 40.0% | |
ACCACAATCCAATTCTCAAC+AGG | - | chr1.1:66116904-66116923 | None:intergenic | 40.0% | |
ACCTGTTGAGAATTGGATTG+TGG | + | chr1.1:66116900-66116919 | MS.gene68441:intron | 40.0% | |
AGTATTGTTAGGTGTCCATC+AGG | - | chr1.1:66118055-66118074 | None:intergenic | 40.0% | |
ATGTCTACATACTCACGCTT+AGG | - | chr1.1:66116858-66116877 | None:intergenic | 40.0% | |
ATTGCAGGGAAAATTTGAGG+AGG | + | chr1.1:66120421-66120440 | MS.gene68441:CDS | 40.0% | |
CATGGTATATTGTCTGACTG+GGG | + | chr1.1:66116978-66116997 | MS.gene68441:intron | 40.0% | |
CCTATATCAGGAACCTTTGA+GGG | + | chr1.1:66117863-66117882 | MS.gene68441:intron | 40.0% | |
CCTCAAAGGTTCCTGATATA+GGG | - | chr1.1:66117865-66117884 | None:intergenic | 40.0% | |
CTCAAAGGTTCCTGATATAG+GGG | - | chr1.1:66117864-66117883 | None:intergenic | 40.0% | |
CTTTCTCTGTTCACTTTGCT+TGG | + | chr1.1:66118773-66118792 | MS.gene68441:intron | 40.0% | |
GAACGAAAAAGATGCAAGAC+AGG | - | chr1.1:66118636-66118655 | None:intergenic | 40.0% | |
GAGAATGAATGCATGACTTC+AGG | - | chr1.1:66116506-66116525 | None:intergenic | 40.0% | |
GCAGGAACATCAAAACAGAA+AGG | - | chr1.1:66117652-66117671 | None:intergenic | 40.0% | |
GCTAAAAAACGCTGCAAGTA+AGG | + | chr1.1:66120189-66120208 | MS.gene68441:intron | 40.0% | |
GGAATTGCAGGGAAAATTTG+AGG | + | chr1.1:66120418-66120437 | MS.gene68441:CDS | 40.0% | |
TAAGATTGCATTCTTGGCCT+AGG | + | chr1.1:66117714-66117733 | MS.gene68441:intron | 40.0% | |
TACTATGTATTTGAGAGGCC+CGG | + | chr1.1:66118970-66118989 | MS.gene68441:intron | 40.0% | |
TATTTGTGCGGTATGGTAGT+TGG | + | chr1.1:66117498-66117517 | MS.gene68441:intron | 40.0% | |
TGAACAGAGAAAGATAGCTG+AGG | - | chr1.1:66118766-66118785 | None:intergenic | 40.0% | |
TGTGAATGCAATGGTGCTTA+CGG | - | chr1.1:66118728-66118747 | None:intergenic | 40.0% | |
TGTGTAAAGACGAGATAGAG+AGG | - | chr1.1:66120094-66120113 | None:intergenic | 40.0% | |
TTACTCTGTCTTGGCAACTA+GGG | + | chr1.1:66116332-66116351 | MS.gene68441:intron | 40.0% | |
TTCTGCAAGCAAAGCATGAA+TGG | - | chr1.1:66120393-66120412 | None:intergenic | 40.0% | |
TTTACTCTGTCTTGGCAACT+AGG | + | chr1.1:66116331-66116350 | MS.gene68441:intron | 40.0% | |
! | ATCATAATGTTGCTTAGGGG+AGG | + | chr1.1:66119523-66119542 | MS.gene68441:intron | 40.0% |
! | CTCTGAAAGTGGTATTGTTG+TGG | + | chr1.1:66119251-66119270 | MS.gene68441:CDS | 40.0% |
! | TCATAATGTTGCTTAGGGGA+GGG | + | chr1.1:66119524-66119543 | MS.gene68441:intron | 40.0% |
! | TGTTCTTCCTTTTCACACTC+CGG | + | chr1.1:66118610-66118629 | MS.gene68441:intron | 40.0% |
! | TTGTTTTCTTCCTACCCTTG+TGG | - | chr1.1:66119227-66119246 | None:intergenic | 40.0% |
!! | GCATTAGGGTATCGTATTTG+TGG | + | chr1.1:66120059-66120078 | MS.gene68441:intron | 40.0% |
!! | GCTATTGTTGTGAGCATTGA+AGG | - | chr1.1:66118327-66118346 | None:intergenic | 40.0% |
!! | TAGGGTTATTAGTCTTGTGC+TGG | + | chr1.1:66119625-66119644 | MS.gene68441:intron | 40.0% |
!!! | AGTTTTGCGGGAGTATTGTT+AGG | - | chr1.1:66118066-66118085 | None:intergenic | 40.0% |
!!! | GCACTTTTGAGATTGATTGG+TGG | + | chr1.1:66116396-66116415 | MS.gene68441:intron | 40.0% |
AACGCTGCAAGTAAGGTTTC+TGG | + | chr1.1:66120196-66120215 | MS.gene68441:intron | 45.0% | |
AGAAGCTCAGAGAAACGGTA+TGG | + | chr1.1:66119362-66119381 | MS.gene68441:intron | 45.0% | |
ATACTCACGCTTAGGAGGTA+AGG | - | chr1.1:66116850-66116869 | None:intergenic | 45.0% | |
CCAACCTCAGTCTACTTTGA+TGG | - | chr1.1:66117036-66117055 | None:intergenic | 45.0% | |
CCATCAAAGTAGACTGAGGT+TGG | + | chr1.1:66117033-66117052 | MS.gene68441:CDS | 45.0% | |
CCCTATATCAGGAACCTTTG+AGG | + | chr1.1:66117862-66117881 | MS.gene68441:intron | 45.0% | |
CCCTCAAAGGTTCCTGATAT+AGG | - | chr1.1:66117866-66117885 | None:intergenic | 45.0% | |
CGACTATGTAACTGCTTACG+AGG | + | chr1.1:66117078-66117097 | MS.gene68441:CDS | 45.0% | |
GAAAAAGATGCAAGACAGGC+CGG | - | chr1.1:66118632-66118651 | None:intergenic | 45.0% | |
GATGCCATCAAAGTAGACTG+AGG | + | chr1.1:66117029-66117048 | MS.gene68441:CDS | 45.0% | |
GCACCAAATTGGTGAGTTCA+TGG | + | chr1.1:66116223-66116242 | MS.gene68441:intron | 45.0% | |
GCACTATACAACTCCTCATC+AGG | + | chr1.1:66117782-66117801 | MS.gene68441:intron | 45.0% | |
GCTTTCCTATTTGTGCGGTA+TGG | + | chr1.1:66117491-66117510 | MS.gene68441:intron | 45.0% | |
GGAGACGATGACTGCTTAAT+TGG | + | chr1.1:66116653-66116672 | MS.gene68441:CDS | 45.0% | |
TAACTCGCCATAATGAGCCA+TGG | + | chr1.1:66118535-66118554 | MS.gene68441:intron | 45.0% | |
TACCACTGTTGCTGTAGCTA+TGG | - | chr1.1:66118431-66118450 | None:intergenic | 45.0% | |
TCAAAGTAGACTGAGGTTGG+AGG | + | chr1.1:66117036-66117055 | MS.gene68441:CDS | 45.0% | |
TCTACATACTCACGCTTAGG+AGG | - | chr1.1:66116855-66116874 | None:intergenic | 45.0% | |
TCTCTCTTTCGTTCCTGATG+AGG | - | chr1.1:66117798-66117817 | None:intergenic | 45.0% | |
TGAATGCATGACTTCAGGCA+TGG | - | chr1.1:66116501-66116520 | None:intergenic | 45.0% | |
TTAGAAGATACAGGGGCCAA+TGG | - | chr1.1:66117905-66117924 | None:intergenic | 45.0% | |
!! | GATGATGGGTTGTGAATCCT+AGG | - | chr1.1:66120150-66120169 | None:intergenic | 45.0% |
!! | TTGTGAGCATTGAAGGTCCA+TGG | - | chr1.1:66118320-66118339 | None:intergenic | 45.0% |
!! | TTTGTAAAGGGCGGTGTTGT+GGG | - | chr1.1:66119002-66119021 | None:intergenic | 45.0% |
!! | TTTTGTAAAGGGCGGTGTTG+TGG | - | chr1.1:66119003-66119022 | None:intergenic | 45.0% |
!!! | AGTCACTTTTCATGCTGCCT+AGG | - | chr1.1:66117734-66117753 | None:intergenic | 45.0% |
AAAGAAGCCCTTGCCACAGA+AGG | + | chr1.1:66119180-66119199 | MS.gene68441:CDS | 50.0% | |
ACCAAGTGCTTAGCACATGG+AGG | - | chr1.1:66117452-66117471 | None:intergenic | 50.0% | |
ACCCTATGTTAGTCCCTCCA+TGG | - | chr1.1:66118555-66118574 | None:intergenic | 50.0% | |
ACGGTAGTTGCACACCACAA+GGG | + | chr1.1:66119210-66119229 | MS.gene68441:CDS | 50.0% | |
AGCACCAAGTGCTTAGCACA+TGG | - | chr1.1:66117455-66117474 | None:intergenic | 50.0% | |
AGCCATAGCTACAGCAACAG+TGG | + | chr1.1:66118426-66118445 | MS.gene68441:intron | 50.0% | |
AGCCATGGAGGGACTAACAT+AGG | + | chr1.1:66118550-66118569 | MS.gene68441:intron | 50.0% | |
AGCCGCTGCGGAGAATAAAT+TGG | + | chr1.1:66119287-66119306 | MS.gene68441:CDS | 50.0% | |
AGTCCCTCCATGGCTCATTA+TGG | - | chr1.1:66118545-66118564 | None:intergenic | 50.0% | |
ATCAAAGATTGGGGCTCTGC+TGG | - | chr1.1:66118249-66118268 | None:intergenic | 50.0% | |
CCAATGGTTAAGGAGGTTGC+AGG | - | chr1.1:66117889-66117908 | None:intergenic | 50.0% | |
CCTGCAACCTCCTTAACCAT+TGG | + | chr1.1:66117886-66117905 | MS.gene68441:intron | 50.0% | |
GATACAGGGGCCAATGGTTA+AGG | - | chr1.1:66117899-66117918 | None:intergenic | 50.0% | |
GCCATGGAGGGACTAACATA+GGG | + | chr1.1:66118551-66118570 | MS.gene68441:intron | 50.0% | |
GGAAAGGAGAGACTAAAGGG+AGG | - | chr1.1:66119034-66119053 | None:intergenic | 50.0% | |
GGCCAATTTATTCTCCGCAG+CGG | - | chr1.1:66119292-66119311 | None:intergenic | 50.0% | |
TAAGCAGTCATCGTCTCCAG+AGG | - | chr1.1:66116651-66116670 | None:intergenic | 50.0% | |
TAGGTGTCCATCAGGACTGT+TGG | - | chr1.1:66118047-66118066 | None:intergenic | 50.0% | |
TAGTTGCACACCACAAGGGT+AGG | + | chr1.1:66119214-66119233 | MS.gene68441:CDS | 50.0% | |
TCGCCATAATGAGCCATGGA+GGG | + | chr1.1:66118539-66118558 | MS.gene68441:intron | 50.0% | |
TCTCTGACCAACAGTCCTGA+TGG | + | chr1.1:66118037-66118056 | MS.gene68441:intron | 50.0% | |
TGAGAGCCAATTATGGCCTC+TGG | + | chr1.1:66118291-66118310 | MS.gene68441:intron | 50.0% | |
TGGACTCCAGAGGCCATAAT+TGG | - | chr1.1:66118300-66118319 | None:intergenic | 50.0% | |
! | TAATGTTGCTTAGGGGAGGG+CGG | + | chr1.1:66119527-66119546 | MS.gene68441:intron | 50.0% |
!! | ATTATGGCCTCTGGAGTCCA+TGG | + | chr1.1:66118300-66118319 | MS.gene68441:intron | 50.0% |
ACAGGGGCCAATGGTTAAGG+AGG | - | chr1.1:66117896-66117915 | None:intergenic | 55.0% | |
ACATGGAGGGCCCCTATATC+AGG | + | chr1.1:66117851-66117870 | MS.gene68441:intron | 55.0% | |
AGACAGGCCGGAGTGTGAAA+AGG | - | chr1.1:66118620-66118639 | None:intergenic | 55.0% | |
CCATCCACCTTCTGTGGCAA+GGG | - | chr1.1:66119190-66119209 | None:intergenic | 55.0% | |
CTCACGCTTAGGAGGTAAGG+TGG | - | chr1.1:66116847-66116866 | None:intergenic | 55.0% | |
CTCGCCATAATGAGCCATGG+AGG | + | chr1.1:66118538-66118557 | MS.gene68441:intron | 55.0% | |
GACGGTAGTTGCACACCACA+AGG | + | chr1.1:66119209-66119228 | MS.gene68441:CDS | 55.0% | |
GCCTCCATGTGCTAAGCACT+TGG | + | chr1.1:66117448-66117467 | MS.gene68441:intron | 55.0% | |
TACCGTCCATCCACCTTCTG+TGG | - | chr1.1:66119196-66119215 | None:intergenic | 55.0% | |
TCCATCCACCTTCTGTGGCA+AGG | - | chr1.1:66119191-66119210 | None:intergenic | 55.0% | |
TGAAGGTCCATGGACTCCAG+AGG | - | chr1.1:66118310-66118329 | None:intergenic | 55.0% | |
TGCCACAGAAGGTGGATGGA+CGG | + | chr1.1:66119191-66119210 | MS.gene68441:CDS | 55.0% | |
! | AATGTTGCTTAGGGGAGGGC+GGG | + | chr1.1:66119528-66119547 | MS.gene68441:intron | 55.0% |
AGGAGGTTGCAGGCCCTCAA+AGG | - | chr1.1:66117879-66117898 | None:intergenic | 60.0% | |
CCCTTGCCACAGAAGGTGGA+TGG | + | chr1.1:66119187-66119206 | MS.gene68441:CDS | 60.0% | |
CTCAGTTGCTCAAGCCGCTG+CGG | + | chr1.1:66119275-66119294 | MS.gene68441:CDS | 60.0% | |
GAAGCCCTTGCCACAGAAGG+TGG | + | chr1.1:66119183-66119202 | MS.gene68441:CDS | 60.0% | |
! | ATGTTGCTTAGGGGAGGGCG+GGG | + | chr1.1:66119529-66119548 | MS.gene68441:intron | 60.0% |
!! | CGGTGTTGTGGGAGAGTACC+GGG | - | chr1.1:66118991-66119010 | None:intergenic | 60.0% |
!! | GCGGTGTTGTGGGAGAGTAC+CGG | - | chr1.1:66118992-66119011 | None:intergenic | 60.0% |
! | TGTTGCTTAGGGGAGGGCGG+GGG | + | chr1.1:66119530-66119549 | MS.gene68441:intron | 65.0% |
GTTGCTTAGGGGAGGGCGGG+GGG | + | chr1.1:66119531-66119550 | MS.gene68441:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 66116188 | 66120496 | 66116188 | ID=MS.gene68441 |
chr1.1 | mRNA | 66116188 | 66120496 | 66116188 | ID=MS.gene68441.t1;Parent=MS.gene68441 |
chr1.1 | exon | 66116188 | 66116233 | 66116188 | ID=MS.gene68441.t1.exon1;Parent=MS.gene68441.t1 |
chr1.1 | CDS | 66116188 | 66116233 | 66116188 | ID=cds.MS.gene68441.t1;Parent=MS.gene68441.t1 |
chr1.1 | exon | 66116552 | 66116683 | 66116552 | ID=MS.gene68441.t1.exon2;Parent=MS.gene68441.t1 |
chr1.1 | CDS | 66116552 | 66116683 | 66116552 | ID=cds.MS.gene68441.t1;Parent=MS.gene68441.t1 |
chr1.1 | exon | 66117017 | 66117114 | 66117017 | ID=MS.gene68441.t1.exon3;Parent=MS.gene68441.t1 |
chr1.1 | CDS | 66117017 | 66117114 | 66117017 | ID=cds.MS.gene68441.t1;Parent=MS.gene68441.t1 |
chr1.1 | exon | 66119168 | 66119378 | 66119168 | ID=MS.gene68441.t1.exon4;Parent=MS.gene68441.t1 |
chr1.1 | CDS | 66119168 | 66119378 | 66119168 | ID=cds.MS.gene68441.t1;Parent=MS.gene68441.t1 |
chr1.1 | exon | 66120411 | 66120496 | 66120411 | ID=MS.gene68441.t1.exon5;Parent=MS.gene68441.t1 |
chr1.1 | CDS | 66120411 | 66120496 | 66120411 | ID=cds.MS.gene68441.t1;Parent=MS.gene68441.t1 |
Gene Sequence |
Protein sequence |