Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68498.t1 | XP_024635359.1 | 91 | 345 | 31 | 0 | 1 | 345 | 590 | 934 | 2.00E-169 | 605.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68498.t1 | Q39214 | 29.6 | 226 | 149 | 4 | 115 | 337 | 697 | 915 | 6.3e-15 | 83.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68498.t1 | G7J226 | 91.0 | 345 | 31 | 0 | 1 | 345 | 590 | 934 | 1.4e-169 | 605.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050612 | MS.gene68498 | -0.802712 | 4.93E-49 | -1.69E-46 |
| MS.gene051138 | MS.gene68498 | 0.801314 | 9.55E-49 | -1.69E-46 |
| MS.gene051651 | MS.gene68498 | 0.825211 | 5.31E-54 | -1.69E-46 |
| MS.gene053420 | MS.gene68498 | 0.803398 | 3.55E-49 | -1.69E-46 |
| MS.gene055748 | MS.gene68498 | -0.812557 | 3.99E-51 | -1.69E-46 |
| MS.gene055750 | MS.gene68498 | -0.801434 | 9.02E-49 | -1.69E-46 |
| MS.gene055751 | MS.gene68498 | -0.822392 | 2.43E-53 | -1.69E-46 |
| MS.gene05589 | MS.gene68498 | -0.806213 | 9.17E-50 | -1.69E-46 |
| MS.gene056856 | MS.gene68498 | 0.83739 | 5.35E-57 | -1.69E-46 |
| MS.gene06084 | MS.gene68498 | 0.803953 | 2.73E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68498.t1 | MTR_3g056310 | 91.304 | 345 | 30 | 0 | 1 | 345 | 590 | 934 | 0.0 | 639 |
| MS.gene68498.t1 | MTR_3g056200 | 74.328 | 335 | 82 | 4 | 1 | 333 | 588 | 920 | 7.90e-156 | 460 |
| MS.gene68498.t1 | MTR_3g056380 | 67.560 | 336 | 103 | 4 | 1 | 333 | 585 | 917 | 7.84e-141 | 422 |
| MS.gene68498.t1 | MTR_3g056320 | 68.750 | 336 | 100 | 4 | 1 | 333 | 595 | 928 | 1.69e-138 | 416 |
| MS.gene68498.t1 | MTR_3g056620 | 66.856 | 353 | 99 | 3 | 1 | 335 | 592 | 944 | 3.57e-137 | 413 |
| MS.gene68498.t1 | MTR_3g056190 | 68.168 | 333 | 92 | 7 | 1 | 323 | 594 | 922 | 6.28e-132 | 399 |
| MS.gene68498.t1 | MTR_3g056410 | 58.383 | 334 | 126 | 7 | 9 | 339 | 560 | 883 | 9.19e-108 | 335 |
| MS.gene68498.t1 | MTR_3g056360 | 58.383 | 334 | 126 | 7 | 9 | 339 | 569 | 892 | 3.50e-107 | 333 |
| MS.gene68498.t1 | MTR_3g056610 | 62.353 | 255 | 59 | 1 | 16 | 270 | 439 | 656 | 1.09e-91 | 287 |
| MS.gene68498.t1 | MTR_3g056180 | 64.017 | 239 | 74 | 4 | 98 | 334 | 72 | 300 | 2.59e-83 | 255 |
| MS.gene68498.t1 | MTR_3g056585 | 50.307 | 326 | 145 | 8 | 11 | 332 | 592 | 904 | 9.25e-78 | 256 |
| MS.gene68498.t1 | MTR_3g056625 | 47.841 | 301 | 137 | 7 | 9 | 301 | 283 | 571 | 4.72e-67 | 221 |
| MS.gene68498.t1 | MTR_3g069210 | 46.364 | 330 | 154 | 10 | 9 | 333 | 589 | 900 | 5.65e-67 | 226 |
| MS.gene68498.t1 | MTR_1g078150 | 48.958 | 288 | 128 | 7 | 17 | 297 | 405 | 680 | 1.32e-66 | 223 |
| MS.gene68498.t1 | MTR_3g056590 | 48.837 | 301 | 139 | 6 | 14 | 306 | 611 | 904 | 1.38e-65 | 223 |
| MS.gene68498.t1 | MTR_3g456030 | 44.048 | 336 | 171 | 8 | 11 | 344 | 596 | 916 | 3.54e-64 | 219 |
| MS.gene68498.t1 | MTR_3g055930 | 44.277 | 332 | 163 | 8 | 11 | 334 | 617 | 934 | 2.57e-62 | 214 |
| MS.gene68498.t1 | MTR_3g456070 | 47.917 | 288 | 136 | 6 | 11 | 297 | 440 | 714 | 6.21e-62 | 211 |
| MS.gene68498.t1 | MTR_3g455910 | 47.917 | 288 | 136 | 6 | 11 | 297 | 520 | 794 | 4.42e-61 | 209 |
| MS.gene68498.t1 | MTR_3g055830 | 46.181 | 288 | 140 | 6 | 10 | 297 | 594 | 866 | 5.27e-60 | 207 |
| MS.gene68498.t1 | MTR_1g078190 | 47.213 | 305 | 129 | 10 | 20 | 306 | 608 | 898 | 1.89e-58 | 203 |
| MS.gene68498.t1 | MTR_3g456080 | 49.402 | 251 | 114 | 4 | 32 | 280 | 51 | 290 | 7.45e-58 | 189 |
| MS.gene68498.t1 | MTR_3g055720 | 46.690 | 287 | 140 | 7 | 11 | 297 | 597 | 870 | 2.05e-57 | 200 |
| MS.gene68498.t1 | MTR_3g011460 | 41.916 | 334 | 167 | 7 | 11 | 331 | 601 | 920 | 5.38e-56 | 196 |
| MS.gene68498.t1 | MTR_3g011390 | 39.583 | 336 | 176 | 7 | 11 | 333 | 604 | 925 | 1.23e-55 | 195 |
| MS.gene68498.t1 | MTR_3g011270 | 42.308 | 338 | 165 | 7 | 11 | 335 | 601 | 921 | 7.81e-55 | 193 |
| MS.gene68498.t1 | MTR_5g092950 | 48.454 | 291 | 133 | 8 | 17 | 301 | 163 | 442 | 1.05e-54 | 186 |
| MS.gene68498.t1 | MTR_3g055740 | 45.139 | 288 | 145 | 6 | 11 | 297 | 538 | 813 | 1.66e-54 | 191 |
| MS.gene68498.t1 | MTR_3g011280 | 38.988 | 336 | 178 | 6 | 11 | 333 | 570 | 891 | 2.28e-53 | 189 |
| MS.gene68498.t1 | MTR_3g011280 | 38.988 | 336 | 178 | 6 | 11 | 333 | 602 | 923 | 2.73e-53 | 189 |
| MS.gene68498.t1 | MTR_0691s0020 | 40.533 | 338 | 171 | 8 | 11 | 335 | 602 | 922 | 2.25e-51 | 183 |
| MS.gene68498.t1 | MTR_3g011480 | 41.867 | 332 | 166 | 6 | 11 | 329 | 601 | 918 | 3.71e-50 | 179 |
| MS.gene68498.t1 | MTR_3g011420 | 37.353 | 340 | 186 | 6 | 11 | 337 | 603 | 928 | 7.39e-50 | 179 |
| MS.gene68498.t1 | MTR_3g011360 | 38.554 | 332 | 177 | 7 | 11 | 329 | 570 | 887 | 2.47e-49 | 177 |
| MS.gene68498.t1 | MTR_1g016210 | 40.774 | 336 | 170 | 9 | 11 | 334 | 606 | 924 | 2.48e-47 | 171 |
| MS.gene68498.t1 | MTR_3g011370 | 38.855 | 332 | 176 | 6 | 11 | 329 | 602 | 919 | 2.53e-47 | 171 |
| MS.gene68498.t1 | MTR_3g012240 | 38.053 | 339 | 178 | 9 | 11 | 333 | 647 | 969 | 3.71e-46 | 168 |
| MS.gene68498.t1 | MTR_3g012310 | 36.418 | 335 | 181 | 9 | 11 | 329 | 601 | 919 | 6.62e-46 | 167 |
| MS.gene68498.t1 | MTR_3g012060 | 37.982 | 337 | 181 | 8 | 11 | 333 | 597 | 919 | 1.44e-44 | 164 |
| MS.gene68498.t1 | MTR_3g055870 | 42.857 | 287 | 131 | 5 | 11 | 297 | 594 | 847 | 1.59e-44 | 163 |
| MS.gene68498.t1 | MTR_3g012250 | 38.757 | 338 | 178 | 10 | 11 | 333 | 606 | 929 | 2.69e-44 | 163 |
| MS.gene68498.t1 | MTR_3g019340 | 38.558 | 319 | 165 | 6 | 30 | 329 | 567 | 873 | 3.00e-44 | 162 |
| MS.gene68498.t1 | MTR_3g011300 | 39.458 | 332 | 173 | 8 | 11 | 329 | 600 | 916 | 3.72e-44 | 162 |
| MS.gene68498.t1 | MTR_3g012090 | 39.339 | 333 | 174 | 8 | 11 | 329 | 600 | 918 | 1.06e-41 | 155 |
| MS.gene68498.t1 | MTR_3g455940 | 38.435 | 294 | 117 | 8 | 9 | 298 | 483 | 716 | 4.46e-41 | 153 |
| MS.gene68498.t1 | MTR_5g027810 | 36.000 | 325 | 179 | 9 | 32 | 343 | 608 | 916 | 4.69e-41 | 153 |
| MS.gene68498.t1 | MTR_5g027900 | 34.734 | 357 | 201 | 11 | 1 | 343 | 575 | 913 | 9.21e-39 | 147 |
| MS.gene68498.t1 | MTR_3g455900 | 39.024 | 287 | 108 | 5 | 11 | 297 | 479 | 698 | 1.11e-38 | 146 |
| MS.gene68498.t1 | MTR_5g027860 | 35.097 | 359 | 197 | 13 | 1 | 343 | 573 | 911 | 2.76e-38 | 145 |
| MS.gene68498.t1 | MTR_1g011990 | 43.609 | 266 | 111 | 6 | 36 | 297 | 553 | 783 | 4.45e-38 | 144 |
| MS.gene68498.t1 | MTR_3g055710 | 37.461 | 323 | 160 | 7 | 11 | 332 | 437 | 718 | 3.09e-37 | 142 |
| MS.gene68498.t1 | MTR_3g012050 | 38.710 | 310 | 160 | 8 | 36 | 329 | 608 | 903 | 4.08e-36 | 139 |
| MS.gene68498.t1 | MTR_3g084000 | 59.091 | 154 | 48 | 2 | 1 | 139 | 37 | 190 | 6.37e-35 | 127 |
| MS.gene68498.t1 | MTR_3g012080 | 40.465 | 215 | 119 | 4 | 123 | 333 | 2 | 211 | 1.01e-33 | 124 |
| MS.gene68498.t1 | MTR_3g012080 | 40.566 | 212 | 117 | 4 | 126 | 333 | 2 | 208 | 5.31e-33 | 122 |
| MS.gene68498.t1 | MTR_1g016217 | 40.000 | 245 | 135 | 5 | 91 | 334 | 1 | 234 | 2.08e-32 | 122 |
| MS.gene68498.t1 | MTR_1g078170 | 39.526 | 253 | 94 | 8 | 84 | 301 | 181 | 409 | 4.45e-31 | 122 |
| MS.gene68498.t1 | MTR_5g027910 | 32.092 | 349 | 207 | 11 | 10 | 343 | 587 | 920 | 7.14e-28 | 115 |
| MS.gene68498.t1 | MTR_3g013700 | 31.392 | 309 | 149 | 8 | 39 | 333 | 411 | 670 | 3.47e-26 | 110 |
| MS.gene68498.t1 | MTR_3g056300 | 43.791 | 153 | 46 | 3 | 28 | 180 | 519 | 631 | 7.08e-26 | 108 |
| MS.gene68498.t1 | MTR_3g056300 | 35.429 | 175 | 81 | 7 | 174 | 334 | 507 | 663 | 7.21e-12 | 67.0 |
| MS.gene68498.t1 | MTR_5g027870 | 30.460 | 348 | 211 | 10 | 10 | 343 | 585 | 915 | 5.47e-25 | 106 |
| MS.gene68498.t1 | MTR_4g077270 | 42.975 | 121 | 60 | 3 | 42 | 157 | 1 | 117 | 1.68e-18 | 81.6 |
| MS.gene68498.t1 | MTR_4g077270 | 53.846 | 65 | 29 | 1 | 269 | 332 | 82 | 146 | 1.48e-12 | 65.1 |
| MS.gene68498.t1 | MTR_3g012270 | 37.725 | 167 | 81 | 5 | 32 | 184 | 624 | 781 | 1.58e-16 | 81.3 |
| MS.gene68498.t1 | MTR_1g031720 | 40.260 | 154 | 73 | 6 | 191 | 335 | 834 | 977 | 3.66e-16 | 80.1 |
| MS.gene68498.t1 | MTR_1g031720 | 34.194 | 155 | 77 | 4 | 47 | 189 | 760 | 901 | 1.76e-11 | 65.9 |
| MS.gene68498.t1 | MTR_2g078070 | 28.254 | 315 | 180 | 15 | 10 | 291 | 586 | 887 | 4.18e-13 | 70.9 |
| MS.gene68498.t1 | MTR_8g065000 | 50.667 | 75 | 36 | 1 | 241 | 314 | 50 | 124 | 3.15e-12 | 63.5 |
| MS.gene68498.t1 | MTR_2g038510 | 28.487 | 337 | 206 | 14 | 10 | 339 | 619 | 927 | 3.24e-12 | 68.2 |
| MS.gene68498.t1 | MTR_4g021690 | 28.571 | 357 | 176 | 18 | 1 | 312 | 576 | 898 | 1.40e-11 | 66.2 |
| MS.gene68498.t1 | MTR_3g019040 | 29.856 | 278 | 168 | 12 | 34 | 297 | 615 | 879 | 3.10e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68498.t1 | AT3G07040 | 27.729 | 339 | 216 | 8 | 10 | 337 | 595 | 915 | 6.47e-20 | 91.7 |
| MS.gene68498.t1 | AT1G69550 | 30.464 | 302 | 181 | 10 | 2 | 296 | 915 | 1194 | 1.11e-12 | 69.7 |
| MS.gene68498.t1 | AT1G69550 | 29.452 | 292 | 185 | 8 | 2 | 290 | 939 | 1212 | 3.79e-11 | 65.1 |
| MS.gene68498.t1 | AT1G69550 | 28.782 | 271 | 154 | 7 | 35 | 304 | 875 | 1107 | 7.75e-11 | 63.9 |
Find 61 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCCAGCTTAACAAGATTT+TGG | 0.150003 | 3.4:+53426948 | None:intergenic |
| CTTGAAATTCCTCATGATTT+AGG | 0.199342 | 3.4:-53427511 | MS.gene68498:CDS |
| CTTCAACATCTTAAACTCTT+TGG | 0.228882 | 3.4:-53427007 | MS.gene68498:CDS |
| ACGAGCATGCCAATGGATTT+TGG | 0.234338 | 3.4:+53427427 | None:intergenic |
| TCCAATTTGTCTTCATAATC+AGG | 0.250466 | 3.4:+53426842 | None:intergenic |
| GTGAAGATGAAAATGATAAT+AGG | 0.258808 | 3.4:-53427222 | MS.gene68498:CDS |
| GTTAACAGAACTTAGGGAAT+TGG | 0.278022 | 3.4:-53427170 | MS.gene68498:CDS |
| TCCTGATTATGAAGACAAAT+TGG | 0.283692 | 3.4:-53426843 | MS.gene68498:CDS |
| CCAATGCACCTTCGTCAATA+AGG | 0.311208 | 3.4:+53426741 | None:intergenic |
| TTAACAGAACTTAGGGAATT+GGG | 0.367166 | 3.4:-53427169 | MS.gene68498:CDS |
| ATTCAATTGAAGGATGGTAT+TGG | 0.385282 | 3.4:-53427292 | MS.gene68498:CDS |
| TCTGTCTTTGATTCAATTGA+AGG | 0.400024 | 3.4:-53427302 | MS.gene68498:CDS |
| AATCAGGAACACCAGAGATA+TGG | 0.406742 | 3.4:+53426858 | None:intergenic |
| CTAAGCTTGCAAATCTCCTT+CGG | 0.409201 | 3.4:+53427352 | None:intergenic |
| TTGTTGTCCTTCCATATCTC+TGG | 0.410312 | 3.4:-53426869 | MS.gene68498:CDS |
| ATATGGAAGGACAACAAGTT+TGG | 0.414189 | 3.4:+53426875 | None:intergenic |
| TGAAGATGAAAATGATAATA+GGG | 0.415450 | 3.4:-53427221 | MS.gene68498:CDS |
| ACAACAAGTTTGGCATACTT+TGG | 0.419201 | 3.4:+53426885 | None:intergenic |
| TCTGTCTTACTGATATGAAT+AGG | 0.425753 | 3.4:-53426634 | MS.gene68498:CDS |
| TAGGAAAGTTAACAGAACTT+AGG | 0.426191 | 3.4:-53427177 | MS.gene68498:CDS |
| ACTCCAAAATCTTGTTAAGC+TGG | 0.431746 | 3.4:-53426951 | MS.gene68498:CDS |
| GCTGGATTTGCCACGTTTGA+AGG | 0.441865 | 3.4:-53426933 | MS.gene68498:CDS |
| AGAACTTAGGGAATTGGGCT+TGG | 0.449536 | 3.4:-53427164 | MS.gene68498:CDS |
| AGGAAAGTTAACAGAACTTA+GGG | 0.463588 | 3.4:-53427176 | MS.gene68498:CDS |
| GCTCGTGAACCTAGAGACTT+TGG | 0.464420 | 3.4:-53427410 | MS.gene68498:CDS |
| AGTCGGTAGCGACATCAGTT+GGG | 0.466067 | 3.4:+53426685 | None:intergenic |
| GTACCCTACTTAGAGTTTGT+AGG | 0.476979 | 3.4:+53427257 | None:intergenic |
| CATCCCTACAAACTCTAAGT+AGG | 0.481950 | 3.4:-53427261 | MS.gene68498:CDS |
| CCTTATTGACGAAGGTGCAT+TGG | 0.489182 | 3.4:-53426741 | MS.gene68498:CDS |
| AGTTTAAGATGTTGAAGCCT+AGG | 0.498945 | 3.4:+53427013 | None:intergenic |
| TGGATGGTTTATGAATTTGA+AGG | 0.502146 | 3.4:-53426801 | MS.gene68498:CDS |
| TACCCTACTTAGAGTTTGTA+GGG | 0.503950 | 3.4:+53427258 | None:intergenic |
| TTGAAGGAACTATATCTTCG+TGG | 0.522055 | 3.4:-53426785 | MS.gene68498:CDS |
| CAATTGAAGGATGGTATTGG+AGG | 0.527204 | 3.4:-53427289 | MS.gene68498:CDS |
| TCTGAACTTCCAAAATCCAT+TGG | 0.533188 | 3.4:-53427436 | MS.gene68498:CDS |
| CAACTGATGTCGCTACCGAC+TGG | 0.539427 | 3.4:-53426683 | MS.gene68498:CDS |
| AAGAGCATTGATCCTGATGA+AGG | 0.540904 | 3.4:-53426602 | MS.gene68498:CDS |
| TACAACAATTGATAGAGCGC+GGG | 0.541902 | 3.4:-53426531 | MS.gene68498:CDS |
| TCTTTGATTCAATTGAAGGA+TGG | 0.543909 | 3.4:-53427298 | MS.gene68498:CDS |
| GTAGAGCTAATCATAGAGCT+AGG | 0.547838 | 3.4:-53427196 | MS.gene68498:CDS |
| CAGTCGGTAGCGACATCAGT+TGG | 0.549937 | 3.4:+53426684 | None:intergenic |
| ATCCCTACAAACTCTAAGTA+GGG | 0.555016 | 3.4:-53427260 | MS.gene68498:CDS |
| TAAGATGTTGAAGCCTAGGT+GGG | 0.559939 | 3.4:+53427017 | None:intergenic |
| ATCTTAAATCCAAAGTCTCT+AGG | 0.564796 | 3.4:+53427401 | None:intergenic |
| AGTAGGGTACGCTTAGATGA+TGG | 0.568506 | 3.4:-53427244 | MS.gene68498:CDS |
| TAGGTTCACGAGCATGCCAA+TGG | 0.572656 | 3.4:+53427420 | None:intergenic |
| AGATGTTGAAGCCTAGGTGG+GGG | 0.592456 | 3.4:+53427019 | None:intergenic |
| GTCGGTAGCGACATCAGTTG+GGG | 0.602615 | 3.4:+53426686 | None:intergenic |
| TTCAAACTTCCTAAATCATG+AGG | 0.606679 | 3.4:+53427502 | None:intergenic |
| AGCTACATCCTTATTGACGA+AGG | 0.611748 | 3.4:-53426749 | MS.gene68498:CDS |
| ATTATGAAGACAAATTGGAA+AGG | 0.618244 | 3.4:-53426838 | MS.gene68498:CDS |
| TTAAGATGTTGAAGCCTAGG+TGG | 0.630986 | 3.4:+53427016 | None:intergenic |
| TTACAACAATTGATAGAGCG+CGG | 0.639449 | 3.4:-53426532 | MS.gene68498:CDS |
| TGAGAATCGTAATATGCCGA+AGG | 0.643265 | 3.4:-53427368 | MS.gene68498:CDS |
| ATTTAAATAAGTTTCCTGAG+TGG | 0.648135 | 3.4:-53426982 | MS.gene68498:CDS |
| TTGTTGCATCTTATTGACTG+AGG | 0.656003 | 3.4:+53427105 | None:intergenic |
| AAGATGTTGAAGCCTAGGTG+GGG | 0.656502 | 3.4:+53427018 | None:intergenic |
| TCGTTCACTTCCTTCAAACG+TGG | 0.664319 | 3.4:+53426923 | None:intergenic |
| ACAACAATTGATAGAGCGCG+GGG | 0.666822 | 3.4:-53426530 | MS.gene68498:CDS |
| AGGAACACCAGAGATATGGA+AGG | 0.690354 | 3.4:+53426862 | None:intergenic |
| TGTAAGTGTTGAATGCCAGT+CGG | 0.694041 | 3.4:+53426668 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAGATGAAAATGATAATA+GGG | - | chr3.4:53426834-53426853 | MS.gene68498:CDS | 20.0% |
| !!! | GTAAAAACTATTTCTATAGA+GGG | + | chr3.4:53427507-53427526 | None:intergenic | 20.0% |
| !!! | TGTAAAAACTATTTCTATAG+AGG | + | chr3.4:53427508-53427527 | None:intergenic | 20.0% |
| ! | ATTATGAAGACAAATTGGAA+AGG | - | chr3.4:53427217-53427236 | MS.gene68498:CDS | 25.0% |
| ! | ATTTAAATAAGTTTCCTGAG+TGG | - | chr3.4:53427073-53427092 | MS.gene68498:CDS | 25.0% |
| ! | GTGAAGATGAAAATGATAAT+AGG | - | chr3.4:53426833-53426852 | MS.gene68498:CDS | 25.0% |
| !! | ATTAGACATTTTCATTGATC+TGG | - | chr3.4:53427002-53427021 | MS.gene68498:CDS | 25.0% |
| !! | CTAGAGAAACTACATATTTT+TGG | - | chr3.4:53426973-53426992 | MS.gene68498:CDS | 25.0% |
| !!! | TGAACCACTTGAAATTTTTT+GGG | - | chr3.4:53426572-53426591 | MS.gene68498:CDS | 25.0% |
| !!! | TTGAACCACTTGAAATTTTT+TGG | - | chr3.4:53426571-53426590 | MS.gene68498:CDS | 25.0% |
| AGGAAAGTTAACAGAACTTA+GGG | - | chr3.4:53426879-53426898 | MS.gene68498:CDS | 30.0% | |
| ATCTTAAATCCAAAGTCTCT+AGG | + | chr3.4:53426657-53426676 | None:intergenic | 30.0% | |
| ATTCAATTGAAGGATGGTAT+TGG | - | chr3.4:53426763-53426782 | MS.gene68498:CDS | 30.0% | |
| CTTCAACATCTTAAACTCTT+TGG | - | chr3.4:53427048-53427067 | MS.gene68498:CDS | 30.0% | |
| CTTGAAATTCCTCATGATTT+AGG | - | chr3.4:53426544-53426563 | MS.gene68498:CDS | 30.0% | |
| TAGGAAAGTTAACAGAACTT+AGG | - | chr3.4:53426878-53426897 | MS.gene68498:CDS | 30.0% | |
| TCCAATTTGTCTTCATAATC+AGG | + | chr3.4:53427216-53427235 | None:intergenic | 30.0% | |
| TCCTGATTATGAAGACAAAT+TGG | - | chr3.4:53427212-53427231 | MS.gene68498:CDS | 30.0% | |
| TCTGTCTTACTGATATGAAT+AGG | - | chr3.4:53427421-53427440 | MS.gene68498:CDS | 30.0% | |
| TCTGTCTTTGATTCAATTGA+AGG | - | chr3.4:53426753-53426772 | MS.gene68498:CDS | 30.0% | |
| TCTTTGATTCAATTGAAGGA+TGG | - | chr3.4:53426757-53426776 | MS.gene68498:CDS | 30.0% | |
| TGAACCCAAAAAATTTCAAG+TGG | + | chr3.4:53426579-53426598 | None:intergenic | 30.0% | |
| TGGATGGTTTATGAATTTGA+AGG | - | chr3.4:53427254-53427273 | MS.gene68498:CDS | 30.0% | |
| TTAACAGAACTTAGGGAATT+GGG | - | chr3.4:53426886-53426905 | MS.gene68498:CDS | 30.0% | |
| TTCAAACTTCCTAAATCATG+AGG | + | chr3.4:53426556-53426575 | None:intergenic | 30.0% | |
| ! | AATCCAGCTTAACAAGATTT+TGG | + | chr3.4:53427110-53427129 | None:intergenic | 30.0% |
| !! | GAAAGGTTACATTTTGAAGA+TGG | - | chr3.4:53427234-53427253 | MS.gene68498:CDS | 30.0% |
| !!! | ACTTGAAATTTTTTGGGTTC+AGG | - | chr3.4:53426578-53426597 | MS.gene68498:CDS | 30.0% |
| !!! | AGAAAGCTACGTCATTTTTT+AGG | - | chr3.4:53426724-53426743 | MS.gene68498:CDS | 30.0% |
| !!! | CTTGAAATTTTTTGGGTTCA+GGG | - | chr3.4:53426579-53426598 | MS.gene68498:CDS | 30.0% |
| ACAACAAGTTTGGCATACTT+TGG | + | chr3.4:53427173-53427192 | None:intergenic | 35.0% | |
| ACTCCAAAATCTTGTTAAGC+TGG | - | chr3.4:53427104-53427123 | MS.gene68498:CDS | 35.0% | |
| ATATGGAAGGACAACAAGTT+TGG | + | chr3.4:53427183-53427202 | None:intergenic | 35.0% | |
| ATCCCTACAAACTCTAAGTA+GGG | - | chr3.4:53426795-53426814 | MS.gene68498:CDS | 35.0% | |
| GTTAACAGAACTTAGGGAAT+TGG | - | chr3.4:53426885-53426904 | MS.gene68498:CDS | 35.0% | |
| TACCCTACTTAGAGTTTGTA+GGG | + | chr3.4:53426800-53426819 | None:intergenic | 35.0% | |
| TCTGAACTTCCAAAATCCAT+TGG | - | chr3.4:53426619-53426638 | MS.gene68498:CDS | 35.0% | |
| TTACAACAATTGATAGAGCG+CGG | - | chr3.4:53427523-53427542 | MS.gene68498:CDS | 35.0% | |
| TTGAAGGAACTATATCTTCG+TGG | - | chr3.4:53427270-53427289 | MS.gene68498:CDS | 35.0% | |
| ! | AAATGCTTTTCTCCTTCATC+AGG | + | chr3.4:53427468-53427487 | None:intergenic | 35.0% |
| ! | AGTTTAAGATGTTGAAGCCT+AGG | + | chr3.4:53427045-53427064 | None:intergenic | 35.0% |
| ! | CTCTGAAAAAGCTCACTTTA+TGG | - | chr3.4:53427340-53427359 | MS.gene68498:CDS | 35.0% |
| ! | TTGTTGCATCTTATTGACTG+AGG | + | chr3.4:53426953-53426972 | None:intergenic | 35.0% |
| !! | GGTTACATTTTGAAGATGGA+TGG | - | chr3.4:53427238-53427257 | MS.gene68498:CDS | 35.0% |
| AATCAGGAACACCAGAGATA+TGG | + | chr3.4:53427200-53427219 | None:intergenic | 40.0% | |
| AGCTACATCCTTATTGACGA+AGG | - | chr3.4:53427306-53427325 | MS.gene68498:CDS | 40.0% | |
| CATCCCTACAAACTCTAAGT+AGG | - | chr3.4:53426794-53426813 | MS.gene68498:CDS | 40.0% | |
| CTAAGCTTGCAAATCTCCTT+CGG | + | chr3.4:53426706-53426725 | None:intergenic | 40.0% | |
| GTACCCTACTTAGAGTTTGT+AGG | + | chr3.4:53426801-53426820 | None:intergenic | 40.0% | |
| GTAGAGCTAATCATAGAGCT+AGG | - | chr3.4:53426859-53426878 | MS.gene68498:CDS | 40.0% | |
| TAAGATGTTGAAGCCTAGGT+GGG | + | chr3.4:53427041-53427060 | None:intergenic | 40.0% | |
| TACAACAATTGATAGAGCGC+GGG | - | chr3.4:53427524-53427543 | MS.gene68498:CDS | 40.0% | |
| TGAGAATCGTAATATGCCGA+AGG | - | chr3.4:53426687-53426706 | MS.gene68498:CDS | 40.0% | |
| TTAAGATGTTGAAGCCTAGG+TGG | + | chr3.4:53427042-53427061 | None:intergenic | 40.0% | |
| TTGTTGTCCTTCCATATCTC+TGG | - | chr3.4:53427186-53427205 | MS.gene68498:CDS | 40.0% | |
| ! | CAATTGAAGGATGGTATTGG+AGG | - | chr3.4:53426766-53426785 | MS.gene68498:CDS | 40.0% |
| !! | AAGAGCATTGATCCTGATGA+AGG | - | chr3.4:53427453-53427472 | MS.gene68498:CDS | 40.0% |
| !! | TGTAAGTGTTGAATGCCAGT+CGG | + | chr3.4:53427390-53427409 | None:intergenic | 40.0% |
| !!! | TGGAGTTTTGAAATCCACTC+AGG | + | chr3.4:53427090-53427109 | None:intergenic | 40.0% |
| !!! | TTTTTTGGGTTCAGGGTGAT+TGG | - | chr3.4:53426586-53426605 | MS.gene68498:CDS | 40.0% |
| AAGATGTTGAAGCCTAGGTG+GGG | + | chr3.4:53427040-53427059 | None:intergenic | 45.0% | |
| ACAACAATTGATAGAGCGCG+GGG | - | chr3.4:53427525-53427544 | MS.gene68498:CDS | 45.0% | |
| AGAACTTAGGGAATTGGGCT+TGG | - | chr3.4:53426891-53426910 | MS.gene68498:CDS | 45.0% | |
| AGGAACACCAGAGATATGGA+AGG | + | chr3.4:53427196-53427215 | None:intergenic | 45.0% | |
| AGTAGGGTACGCTTAGATGA+TGG | - | chr3.4:53426811-53426830 | MS.gene68498:CDS | 45.0% | |
| ATTTGAATTCACCCCCACCT+AGG | - | chr3.4:53427025-53427044 | MS.gene68498:CDS | 45.0% | |
| CCAATGCACCTTCGTCAATA+AGG | + | chr3.4:53427317-53427336 | None:intergenic | 45.0% | |
| TCGTTCACTTCCTTCAAACG+TGG | + | chr3.4:53427135-53427154 | None:intergenic | 45.0% | |
| ! | CCTTATTGACGAAGGTGCAT+TGG | - | chr3.4:53427314-53427333 | MS.gene68498:CDS | 45.0% |
| !! | ACGAGCATGCCAATGGATTT+TGG | + | chr3.4:53426631-53426650 | None:intergenic | 45.0% |
| AGATGTTGAAGCCTAGGTGG+GGG | + | chr3.4:53427039-53427058 | None:intergenic | 50.0% | |
| AGTCGGTAGCGACATCAGTT+GGG | + | chr3.4:53427373-53427392 | None:intergenic | 50.0% | |
| GCTCGTGAACCTAGAGACTT+TGG | - | chr3.4:53426645-53426664 | MS.gene68498:CDS | 50.0% | |
| GCTGGATTTGCCACGTTTGA+AGG | - | chr3.4:53427122-53427141 | MS.gene68498:CDS | 50.0% | |
| TAGGTTCACGAGCATGCCAA+TGG | + | chr3.4:53426638-53426657 | None:intergenic | 50.0% | |
| CAACTGATGTCGCTACCGAC+TGG | - | chr3.4:53427372-53427391 | MS.gene68498:CDS | 55.0% | |
| CAGTCGGTAGCGACATCAGT+TGG | + | chr3.4:53427374-53427393 | None:intergenic | 55.0% | |
| GTCGGTAGCGACATCAGTTG+GGG | + | chr3.4:53427372-53427391 | None:intergenic | 55.0% | |
| TAGAGCGCGGGGTGTATACT+AGG | - | chr3.4:53427536-53427555 | MS.gene68498:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 53426520 | 53427557 | 53426520 | ID=MS.gene68498 |
| chr3.4 | mRNA | 53426520 | 53427557 | 53426520 | ID=MS.gene68498.t1;Parent=MS.gene68498 |
| chr3.4 | exon | 53426520 | 53427557 | 53426520 | ID=MS.gene68498.t1.exon1;Parent=MS.gene68498.t1 |
| chr3.4 | CDS | 53426520 | 53427557 | 53426520 | ID=cds.MS.gene68498.t1;Parent=MS.gene68498.t1 |
| Gene Sequence |
| Protein sequence |
