Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06084.t1 | XP_004503608.1 | 75.6 | 201 | 49 | 0 | 4 | 204 | 15 | 215 | 1.10E-71 | 279.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06084.t1 | Q3HRP0 | 56.2 | 201 | 88 | 0 | 4 | 204 | 10 | 210 | 1.2e-53 | 211.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06084.t1 | A0A1S2YEF0 | 75.6 | 201 | 49 | 0 | 4 | 204 | 15 | 215 | 8.1e-72 | 279.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene06084 | -0.809173 | 2.16E-50 | -1.69E-46 |
| MS.gene050338 | MS.gene06084 | 0.802962 | 4.37E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene06084 | -0.803723 | 3.04E-49 | -1.69E-46 |
| MS.gene050577 | MS.gene06084 | -0.805512 | 1.29E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene06084 | -0.81651 | 5.33E-52 | -1.69E-46 |
| MS.gene051138 | MS.gene06084 | 0.824483 | 7.88E-54 | -1.69E-46 |
| MS.gene051517 | MS.gene06084 | 0.80591 | 1.06E-49 | -1.69E-46 |
| MS.gene051651 | MS.gene06084 | 0.838347 | 3.04E-57 | -1.69E-46 |
| MS.gene051863 | MS.gene06084 | 0.802533 | 5.36E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene06084 | -0.820984 | 5.14E-53 | -1.69E-46 |
| MS.gene055748 | MS.gene06084 | -0.825091 | 5.66E-54 | -1.69E-46 |
| MS.gene055750 | MS.gene06084 | -0.800002 | 1.77E-48 | -1.69E-46 |
| MS.gene055751 | MS.gene06084 | -0.825235 | 5.23E-54 | -1.69E-46 |
| MS.gene05589 | MS.gene06084 | -0.831143 | 1.97E-55 | -1.69E-46 |
| MS.gene056504 | MS.gene06084 | -0.812821 | 3.50E-51 | -1.69E-46 |
| MS.gene056694 | MS.gene06084 | 0.803097 | 4.10E-49 | -1.69E-46 |
| MS.gene056697 | MS.gene06084 | 0.806651 | 7.42E-50 | -1.69E-46 |
| MS.gene056856 | MS.gene06084 | 0.843996 | 9.94E-59 | -1.69E-46 |
| MS.gene057768 | MS.gene06084 | 0.808147 | 3.57E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene06084 | -0.801118 | 1.05E-48 | -1.69E-46 |
| MS.gene06084 | MS.gene061044 | 0.83125 | 1.86E-55 | -1.69E-46 |
| MS.gene06084 | MS.gene061683 | 0.826531 | 2.58E-54 | -1.69E-46 |
| MS.gene06084 | MS.gene061777 | 0.840761 | 7.16E-58 | -1.69E-46 |
| MS.gene06084 | MS.gene062071 | 0.808288 | 3.33E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene06288 | -0.807854 | 4.12E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene062903 | -0.803114 | 4.07E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene063436 | 0.816642 | 4.98E-52 | -1.69E-46 |
| MS.gene06084 | MS.gene065240 | 0.813658 | 2.29E-51 | -1.69E-46 |
| MS.gene06084 | MS.gene065424 | 0.806254 | 8.99E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene066309 | 0.817541 | 3.13E-52 | -1.69E-46 |
| MS.gene06084 | MS.gene066803 | -0.823056 | 1.70E-53 | -1.69E-46 |
| MS.gene06084 | MS.gene068585 | 0.810856 | 9.36E-51 | -1.69E-46 |
| MS.gene06084 | MS.gene07042 | 0.819932 | 8.96E-53 | -1.69E-46 |
| MS.gene06084 | MS.gene071307 | -0.820515 | 6.59E-53 | -1.69E-46 |
| MS.gene06084 | MS.gene071308 | -0.811895 | 5.57E-51 | -1.69E-46 |
| MS.gene06084 | MS.gene072293 | 0.83226 | 1.05E-55 | -1.69E-46 |
| MS.gene06084 | MS.gene072378 | 0.818859 | 1.57E-52 | -1.69E-46 |
| MS.gene06084 | MS.gene072875 | -0.815336 | 9.74E-52 | -1.69E-46 |
| MS.gene06084 | MS.gene074380 | -0.813148 | 2.96E-51 | -1.69E-46 |
| MS.gene06084 | MS.gene08407 | 0.830409 | 2.98E-55 | -1.69E-46 |
| MS.gene06084 | MS.gene08658 | 0.817874 | 2.63E-52 | -1.69E-46 |
| MS.gene06084 | MS.gene09072 | 0.817728 | 2.84E-52 | -1.69E-46 |
| MS.gene06084 | MS.gene20816 | -0.807114 | 5.92E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene22569 | -0.821853 | 3.24E-53 | -1.69E-46 |
| MS.gene06084 | MS.gene22826 | -0.802836 | 4.64E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene23334 | -0.802884 | 4.54E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene24521 | 0.802529 | 5.37E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene24540 | 0.806358 | 8.55E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene25062 | 0.805904 | 1.07E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene26474 | 0.813716 | 2.22E-51 | -1.69E-46 |
| MS.gene06084 | MS.gene26475 | 0.836234 | 1.05E-56 | -1.69E-46 |
| MS.gene06084 | MS.gene27790 | 0.800831 | 1.20E-48 | -1.69E-46 |
| MS.gene06084 | MS.gene28077 | 0.82723 | 1.75E-54 | -1.69E-46 |
| MS.gene06084 | MS.gene28802 | 0.823029 | 1.73E-53 | -1.69E-46 |
| MS.gene06084 | MS.gene29925 | -0.80563 | 1.22E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene29927 | -0.817536 | 3.13E-52 | -1.69E-46 |
| MS.gene06084 | MS.gene31552 | -0.808184 | 3.51E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene32652 | -0.802586 | 5.23E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene32972 | 0.809178 | 2.15E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene33084 | 0.805171 | 1.52E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene33505 | 0.809 | 2.35E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene35208 | 0.851453 | 8.79E-61 | -1.69E-46 |
| MS.gene06084 | MS.gene36056 | -0.808764 | 2.64E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene36419 | 0.80277 | 4.79E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene36841 | 0.81508 | 1.11E-51 | -1.69E-46 |
| MS.gene06084 | MS.gene38112 | -0.803497 | 3.39E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene38577 | 0.803248 | 3.82E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene38615 | 0.816361 | 5.75E-52 | -1.69E-46 |
| MS.gene06084 | MS.gene39520 | -0.801601 | 8.34E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene41367 | 0.831582 | 1.54E-55 | -1.69E-46 |
| MS.gene06084 | MS.gene42631 | -0.80831 | 3.30E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene42678 | -0.80499 | 1.66E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene42884 | -0.824062 | 9.89E-54 | -1.69E-46 |
| MS.gene06084 | MS.gene44487 | -0.812821 | 3.50E-51 | -1.69E-46 |
| MS.gene06084 | MS.gene44913 | -0.810389 | 1.18E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene46433 | 0.816587 | 5.12E-52 | -1.69E-46 |
| MS.gene06084 | MS.gene47437 | 0.812895 | 3.37E-51 | -1.69E-46 |
| MS.gene06084 | MS.gene47576 | 0.8046 | 2.00E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene48360 | 0.800224 | 1.59E-48 | -1.69E-46 |
| MS.gene06084 | MS.gene50072 | 0.819682 | 1.02E-52 | -1.69E-46 |
| MS.gene06084 | MS.gene50073 | 0.808441 | 3.09E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene50448 | 0.802379 | 5.77E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene50620 | 0.81643 | 5.55E-52 | -1.69E-46 |
| MS.gene06084 | MS.gene51130 | 0.812593 | 3.92E-51 | -1.69E-46 |
| MS.gene06084 | MS.gene51168 | -0.810535 | 1.10E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene51927 | -0.801002 | 1.11E-48 | -1.69E-46 |
| MS.gene06084 | MS.gene52024 | 0.800127 | 1.67E-48 | -1.69E-46 |
| MS.gene06084 | MS.gene52289 | -0.804919 | 1.71E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene53435 | 0.811467 | 6.90E-51 | -1.69E-46 |
| MS.gene06084 | MS.gene54290 | 0.802629 | 5.12E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene55899 | 0.826294 | 2.94E-54 | -1.69E-46 |
| MS.gene06084 | MS.gene56598 | -0.804634 | 1.97E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene57291 | 0.838678 | 2.49E-57 | -1.69E-46 |
| MS.gene06084 | MS.gene58012 | -0.815111 | 1.09E-51 | -1.69E-46 |
| MS.gene06084 | MS.gene58060 | -0.813257 | 2.81E-51 | -1.69E-46 |
| MS.gene06084 | MS.gene58062 | -0.828441 | 8.98E-55 | -1.69E-46 |
| MS.gene06084 | MS.gene58282 | -0.826806 | 2.22E-54 | -1.69E-46 |
| MS.gene06084 | MS.gene58466 | -0.828793 | 7.38E-55 | -1.69E-46 |
| MS.gene06084 | MS.gene60712 | -0.832967 | 6.99E-56 | -1.69E-46 |
| MS.gene06084 | MS.gene62750 | -0.809415 | 1.91E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene62884 | 0.803122 | 4.05E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene63642 | 0.806031 | 1.00E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene66761 | 0.810815 | 9.56E-51 | -1.69E-46 |
| MS.gene06084 | MS.gene67462 | 0.804497 | 2.10E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene68071 | -0.805594 | 1.24E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene68203 | 0.805129 | 1.55E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene68498 | 0.803953 | 2.73E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene69635 | 0.800152 | 1.65E-48 | -1.69E-46 |
| MS.gene06084 | MS.gene71268 | -0.80169 | 8.00E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene74561 | 0.804682 | 1.92E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene76418 | -0.816003 | 6.92E-52 | -1.69E-46 |
| MS.gene06084 | MS.gene76536 | 0.826545 | 2.56E-54 | -1.69E-46 |
| MS.gene06084 | MS.gene77349 | 0.808813 | 2.58E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene77492 | 0.812027 | 5.21E-51 | -1.69E-46 |
| MS.gene06084 | MS.gene77595 | 0.808879 | 2.49E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene78250 | 0.814144 | 1.79E-51 | -1.69E-46 |
| MS.gene06084 | MS.gene78942 | -0.811271 | 7.61E-51 | -1.69E-46 |
| MS.gene06084 | MS.gene79624 | 0.800741 | 1.25E-48 | -1.69E-46 |
| MS.gene06084 | MS.gene79856 | 0.801463 | 8.90E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene80239 | -0.810171 | 1.32E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene81725 | 0.823855 | 1.11E-53 | -1.69E-46 |
| MS.gene06084 | MS.gene83364 | 0.804589 | 2.01E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene85152 | 0.810243 | 1.27E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene87342 | 0.816555 | 5.21E-52 | -1.69E-46 |
| MS.gene06084 | MS.gene88240 | 0.801134 | 1.04E-48 | -1.69E-46 |
| MS.gene06084 | MS.gene88896 | -0.824691 | 7.04E-54 | -1.69E-46 |
| MS.gene06084 | MS.gene89932 | 0.802565 | 5.28E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene90819 | 0.802508 | 5.43E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene91317 | 0.813729 | 2.21E-51 | -1.69E-46 |
| MS.gene06084 | MS.gene91915 | -0.807397 | 5.16E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene92089 | 0.808935 | 2.43E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene93196 | 0.81464 | 1.39E-51 | -1.69E-46 |
| MS.gene06084 | MS.gene95132 | 0.847989 | 8.15E-60 | -1.69E-46 |
| MS.gene06084 | MS.gene95596 | 0.810952 | 8.92E-51 | -1.69E-46 |
| MS.gene06084 | MS.gene96299 | 0.838563 | 2.67E-57 | -1.69E-46 |
| MS.gene06084 | MS.gene96701 | 0.810612 | 1.06E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene97340 | 0.800102 | 1.69E-48 | -1.69E-46 |
| MS.gene06084 | MS.gene97726 | -0.821174 | 4.65E-53 | -1.69E-46 |
| MS.gene06084 | MS.gene98678 | -0.818379 | 2.02E-52 | -1.69E-46 |
| MS.gene06084 | MS.gene99603 | 0.814234 | 1.71E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06084.t1 | MTR_8g099575 | 98.529 | 204 | 3 | 0 | 1 | 204 | 7 | 210 | 5.30e-146 | 404 |
| MS.gene06084.t1 | MTR_3g091440 | 66.667 | 195 | 65 | 0 | 10 | 204 | 17 | 211 | 4.54e-95 | 276 |
| MS.gene06084.t1 | MTR_3g091440 | 66.486 | 185 | 62 | 0 | 20 | 204 | 28 | 212 | 6.83e-91 | 266 |
| MS.gene06084.t1 | MTR_8g027620 | 62.564 | 195 | 73 | 0 | 10 | 204 | 39 | 233 | 1.79e-85 | 255 |
| MS.gene06084.t1 | MTR_4g099210 | 57.143 | 196 | 84 | 0 | 9 | 204 | 15 | 210 | 1.71e-84 | 249 |
| MS.gene06084.t1 | MTR_4g134250 | 57.949 | 195 | 82 | 0 | 10 | 204 | 32 | 226 | 9.62e-83 | 245 |
| MS.gene06084.t1 | MTR_5g096420 | 57.711 | 201 | 85 | 0 | 4 | 204 | 25 | 225 | 1.04e-82 | 245 |
| MS.gene06084.t1 | MTR_3g060730 | 58.462 | 195 | 81 | 0 | 10 | 204 | 31 | 225 | 4.96e-82 | 243 |
| MS.gene06084.t1 | MTR_1g016430 | 63.102 | 187 | 69 | 0 | 15 | 201 | 60 | 246 | 5.34e-82 | 244 |
| MS.gene06084.t1 | MTR_1g016430 | 62.778 | 180 | 67 | 0 | 22 | 201 | 1 | 180 | 9.40e-80 | 236 |
| MS.gene06084.t1 | MTR_3g060730 | 59.016 | 183 | 75 | 0 | 22 | 204 | 5 | 187 | 4.12e-79 | 234 |
| MS.gene06084.t1 | MTR_1g016430 | 62.778 | 180 | 67 | 0 | 22 | 201 | 99 | 278 | 2.08e-78 | 236 |
| MS.gene06084.t1 | MTR_2g027500 | 53.731 | 201 | 93 | 0 | 4 | 204 | 23 | 223 | 2.82e-77 | 231 |
| MS.gene06084.t1 | MTR_8g099570 | 52.239 | 201 | 96 | 0 | 4 | 204 | 52 | 252 | 7.80e-77 | 231 |
| MS.gene06084.t1 | MTR_5g013560 | 51.724 | 203 | 87 | 1 | 2 | 204 | 7 | 198 | 1.45e-73 | 221 |
| MS.gene06084.t1 | MTR_2g027440 | 53.500 | 200 | 93 | 0 | 5 | 204 | 29 | 228 | 3.51e-73 | 221 |
| MS.gene06084.t1 | MTR_2g027480 | 53.000 | 200 | 94 | 0 | 5 | 204 | 29 | 228 | 7.80e-72 | 218 |
| MS.gene06084.t1 | MTR_2g027520 | 55.615 | 187 | 83 | 0 | 18 | 204 | 44 | 230 | 4.37e-70 | 213 |
| MS.gene06084.t1 | MTR_8g016170 | 56.842 | 190 | 82 | 0 | 15 | 204 | 66 | 255 | 3.20e-69 | 212 |
| MS.gene06084.t1 | MTR_3g091440 | 67.376 | 141 | 46 | 0 | 10 | 150 | 17 | 157 | 2.07e-64 | 197 |
| MS.gene06084.t1 | MTR_4g113505 | 47.568 | 185 | 97 | 0 | 20 | 204 | 5 | 189 | 8.45e-64 | 197 |
| MS.gene06084.t1 | MTR_8g016170 | 57.803 | 173 | 73 | 0 | 15 | 187 | 47 | 219 | 4.12e-63 | 195 |
| MS.gene06084.t1 | MTR_4g107490 | 32.680 | 153 | 85 | 5 | 21 | 169 | 371 | 509 | 3.27e-12 | 65.1 |
| MS.gene06084.t1 | MTR_1g076650 | 36.719 | 128 | 68 | 5 | 43 | 167 | 25 | 142 | 1.23e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06084.t1 | AT1G64480 | 66.995 | 203 | 67 | 0 | 2 | 204 | 12 | 214 | 1.16e-90 | 265 |
| MS.gene06084.t1 | AT1G64480 | 66.995 | 203 | 67 | 0 | 2 | 204 | 12 | 214 | 1.16e-90 | 265 |
| MS.gene06084.t1 | AT1G64480 | 66.995 | 203 | 67 | 0 | 2 | 204 | 12 | 214 | 1.16e-90 | 265 |
| MS.gene06084.t1 | AT5G24270 | 63.077 | 195 | 72 | 0 | 10 | 204 | 20 | 214 | 4.50e-87 | 256 |
| MS.gene06084.t1 | AT5G24270 | 63.077 | 195 | 72 | 0 | 10 | 204 | 20 | 214 | 4.50e-87 | 256 |
| MS.gene06084.t1 | AT5G24270 | 63.077 | 195 | 72 | 0 | 10 | 204 | 20 | 214 | 4.50e-87 | 256 |
| MS.gene06084.t1 | AT5G24270 | 63.978 | 186 | 67 | 0 | 19 | 204 | 4 | 189 | 1.08e-84 | 249 |
| MS.gene06084.t1 | AT4G17615 | 59.474 | 190 | 77 | 0 | 15 | 204 | 21 | 210 | 2.75e-84 | 248 |
| MS.gene06084.t1 | AT4G17615 | 59.474 | 190 | 77 | 0 | 15 | 204 | 21 | 210 | 2.75e-84 | 248 |
| MS.gene06084.t1 | AT4G17615 | 59.474 | 190 | 77 | 0 | 15 | 204 | 21 | 210 | 2.75e-84 | 248 |
| MS.gene06084.t1 | AT5G47100 | 58.947 | 190 | 78 | 0 | 15 | 204 | 21 | 210 | 1.22e-83 | 247 |
| MS.gene06084.t1 | AT4G26570 | 59.162 | 191 | 78 | 0 | 14 | 204 | 35 | 225 | 2.62e-81 | 241 |
| MS.gene06084.t1 | AT1G64480 | 66.667 | 186 | 62 | 0 | 2 | 187 | 12 | 197 | 8.18e-81 | 239 |
| MS.gene06084.t1 | AT4G26570 | 57.949 | 195 | 78 | 1 | 14 | 204 | 35 | 229 | 3.38e-79 | 236 |
| MS.gene06084.t1 | AT5G55990 | 57.068 | 191 | 82 | 0 | 14 | 204 | 35 | 225 | 1.46e-78 | 234 |
| MS.gene06084.t1 | AT5G55990 | 57.068 | 191 | 82 | 0 | 14 | 204 | 35 | 225 | 1.46e-78 | 234 |
| MS.gene06084.t1 | AT4G33000 | 57.214 | 201 | 85 | 1 | 5 | 204 | 46 | 246 | 3.12e-78 | 234 |
| MS.gene06084.t1 | AT4G33000 | 57.214 | 201 | 85 | 1 | 5 | 204 | 56 | 256 | 5.35e-78 | 234 |
| MS.gene06084.t1 | AT4G17615 | 59.091 | 176 | 72 | 0 | 15 | 190 | 21 | 196 | 3.99e-75 | 227 |
| MS.gene06084.t1 | AT4G16350 | 51.500 | 200 | 92 | 2 | 5 | 204 | 25 | 219 | 6.94e-69 | 210 |
| MS.gene06084.t1 | AT4G16350 | 51.500 | 200 | 92 | 2 | 5 | 204 | 25 | 219 | 6.94e-69 | 210 |
| MS.gene06084.t1 | AT5G24270 | 60.510 | 157 | 62 | 0 | 48 | 204 | 11 | 167 | 1.15e-68 | 207 |
| MS.gene06084.t1 | AT4G17615 | 57.962 | 157 | 66 | 0 | 48 | 204 | 12 | 168 | 3.02e-68 | 206 |
| MS.gene06084.t1 | AT4G01420 | 48.947 | 190 | 97 | 0 | 8 | 197 | 13 | 202 | 2.83e-60 | 187 |
| MS.gene06084.t1 | AT4G01420 | 48.889 | 180 | 92 | 0 | 8 | 187 | 13 | 192 | 8.15e-56 | 176 |
| MS.gene06084.t1 | AT5G47100 | 57.353 | 136 | 58 | 0 | 15 | 150 | 21 | 156 | 1.58e-55 | 174 |
| MS.gene06084.t1 | AT4G26560 | 44.737 | 190 | 92 | 2 | 28 | 204 | 24 | 213 | 6.55e-53 | 169 |
| MS.gene06084.t1 | AT4G33000 | 54.054 | 148 | 67 | 1 | 5 | 151 | 46 | 193 | 1.18e-49 | 160 |
| MS.gene06084.t1 | AT4G33000 | 54.422 | 147 | 66 | 1 | 5 | 150 | 46 | 192 | 1.18e-49 | 160 |
| MS.gene06084.t1 | AT4G33000 | 54.422 | 147 | 66 | 1 | 5 | 150 | 46 | 192 | 1.18e-49 | 160 |
| MS.gene06084.t1 | AT4G33000 | 59.596 | 99 | 39 | 1 | 5 | 102 | 46 | 144 | 7.73e-33 | 115 |
Find 35 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTAACGGAGTAATTGAATT+TGG | 0.204781 | 4.1:+4469183 | MS.gene06084:CDS |
| TTCTTCTCTTCAGATGTCTT+TGG | 0.273008 | 4.1:-4469237 | None:intergenic |
| TGTTGAATCCATTGTGGAAA+AGG | 0.373453 | 4.1:+4469970 | MS.gene06084:CDS |
| AAGGAAACCTACTTTAGATA+TGG | 0.376068 | 4.1:-4470195 | None:intergenic |
| AGGAGATGGGAAGATTGATA+TGG | 0.412059 | 4.1:+4470116 | MS.gene06084:CDS |
| CTCGGTGTGCAAAACAAAGC+TGG | 0.421434 | 4.1:-4470349 | None:intergenic |
| CATTTAAACTGTTTGACCTT+GGG | 0.422487 | 4.1:+4469357 | MS.gene06084:CDS |
| GCCTGTCAGGGATATAACTA+TGG | 0.426019 | 4.1:+4470320 | MS.gene06084:intron |
| ACAATCCTCCATTCTTGCCT+TGG | 0.428593 | 4.1:+4468166 | MS.gene06084:CDS |
| AGTAGTTCAATTATTGATGA+TGG | 0.437437 | 4.1:+4468628 | MS.gene06084:CDS |
| CTCGCTATGCTCAATGTATC+CGG | 0.442215 | 4.1:-4469384 | None:intergenic |
| GCATTTAAACTGTTTGACCT+TGG | 0.472507 | 4.1:+4469356 | MS.gene06084:CDS |
| CTGTTTGACCTTGGGAAGAC+CGG | 0.474090 | 4.1:+4469365 | MS.gene06084:CDS |
| TGATGTCTCCAAGGCAAGAA+TGG | 0.479240 | 4.1:-4468174 | None:intergenic |
| AGCAGAATCTACTTGCAAGC+AGG | 0.490658 | 4.1:+4468903 | MS.gene06084:CDS |
| GAAGTTGAAGGAGATGGTCT+TGG | 0.495842 | 4.1:+4469907 | MS.gene06084:intron |
| TATTTCTGAAAAGTGCGAGT+TGG | 0.503450 | 4.1:-4468874 | None:intergenic |
| ATGGAGGAGGTTGACTCAAA+AGG | 0.503493 | 4.1:+4470096 | MS.gene06084:CDS |
| GAGGTTGACTCAAAAGGAGA+TGG | 0.510798 | 4.1:+4470102 | MS.gene06084:CDS |
| GTCATGATCTTAAGAAGAGA+AGG | 0.521718 | 4.1:-4470168 | None:intergenic |
| GTACTTACATGATGTCTCCA+AGG | 0.563471 | 4.1:-4468183 | None:intergenic |
| CACACTGAAGTTGAAGGAGA+TGG | 0.569454 | 4.1:+4469901 | MS.gene06084:intron |
| TTTGACAGTTACTGTGAATG+AGG | 0.571808 | 4.1:+4468573 | MS.gene06084:intron |
| CGATATTGTTGAATCCATTG+TGG | 0.573614 | 4.1:+4469964 | MS.gene06084:CDS |
| TCGGTGTGCAAAACAAAGCT+GGG | 0.576484 | 4.1:-4470348 | None:intergenic |
| GGAAGATTGATATGGAAGAG+TGG | 0.580086 | 4.1:+4470124 | MS.gene06084:CDS |
| GCAGAATCTACTTGCAAGCA+GGG | 0.583200 | 4.1:+4468904 | MS.gene06084:CDS |
| AGTTACTGTGAATGAGGTTG+AGG | 0.584753 | 4.1:+4468579 | MS.gene06084:intron |
| AGGTTGACTCAAAAGGAGAT+GGG | 0.599352 | 4.1:+4470103 | MS.gene06084:CDS |
| ATGTTTGATATTAAGCGTAA+CGG | 0.599376 | 4.1:+4469168 | MS.gene06084:CDS |
| CAATGTATCCGGTCTTCCCA+AGG | 0.602208 | 4.1:-4469373 | None:intergenic |
| TGATGATGGCTGCATTCACA+AGG | 0.608057 | 4.1:+4468642 | MS.gene06084:CDS |
| TTGTTGCTAATCTTCCACCT+CGG | 0.643102 | 4.1:-4470367 | None:intergenic |
| TGTCTCCAAGGCAAGAATGG+AGG | 0.659508 | 4.1:-4468171 | None:intergenic |
| CGGATACATTGAGCATAGCG+AGG | 0.692909 | 4.1:+4469385 | MS.gene06084:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAATGAAATTTTATAG+TGG | + | chr4.1:4469050-4469069 | MS.gene06084:intron | 10.0% |
| !!! | ATTTTAATGTCACTTTTTAT+AGG | - | chr4.1:4469726-4469745 | None:intergenic | 15.0% |
| !!! | TTCATAGTTACTATTATTTT+TGG | + | chr4.1:4470222-4470241 | MS.gene06084:intron | 15.0% |
| !! | AACTGTAAGAACAAAAAAAA+TGG | - | chr4.1:4469336-4469355 | None:intergenic | 20.0% |
| !! | AAGAGATAAGAATTAAATTG+AGG | - | chr4.1:4470047-4470066 | None:intergenic | 20.0% |
| !! | AATAGTAACTATGAAATTGA+AGG | - | chr4.1:4470217-4470236 | None:intergenic | 20.0% |
| !! | GATAAAGATTGACATAATTA+TGG | + | chr4.1:4469652-4469671 | MS.gene06084:intron | 20.0% |
| !! | TTAACAGTAAAAGATTAGAA+TGG | - | chr4.1:4470263-4470282 | None:intergenic | 20.0% |
| !! | TTCATATAGAGAGAAATATT+TGG | - | chr4.1:4468718-4468737 | None:intergenic | 20.0% |
| !! | TTTGTATTAATTTACCCTTT+AGG | + | chr4.1:4469510-4469529 | MS.gene06084:intron | 20.0% |
| !!! | TCAAAATGGTCTTATATTTA+AGG | + | chr4.1:4469747-4469766 | MS.gene06084:intron | 20.0% |
| !!! | TTCACAAGGTAAATTTATTT+TGG | + | chr4.1:4468656-4468675 | MS.gene06084:intron | 20.0% |
| ! | AAAGTGAAAATGATGAACAA+TGG | - | chr4.1:4469430-4469449 | None:intergenic | 25.0% |
| ! | AGTAGTTCAATTATTGATGA+TGG | + | chr4.1:4468628-4468647 | MS.gene06084:CDS | 25.0% |
| ! | ATGTTTGATATTAAGCGTAA+CGG | + | chr4.1:4469168-4469187 | MS.gene06084:CDS | 25.0% |
| ! | CCATAATTACAATTGTATGA+GGG | - | chr4.1:4468984-4469003 | None:intergenic | 25.0% |
| ! | GATAAATGTATGGTTTCATA+CGG | - | chr4.1:4470003-4470022 | None:intergenic | 25.0% |
| ! | GTGACATTAAAATCTCAAAA+TGG | + | chr4.1:4469733-4469752 | MS.gene06084:intron | 25.0% |
| ! | TCCATAATTACAATTGTATG+AGG | - | chr4.1:4468985-4469004 | None:intergenic | 25.0% |
| ! | TTCTTATCTCTTATACTTCT+TGG | + | chr4.1:4470055-4470074 | MS.gene06084:intron | 25.0% |
| !! | TGAAACATGGATTAAATTCA+TGG | + | chr4.1:4469027-4469046 | MS.gene06084:intron | 25.0% |
| !! | TTGTTCATCATTTTCACTTT+AGG | + | chr4.1:4469430-4469449 | MS.gene06084:intron | 25.0% |
| !!! | TAACAAAAATCTCTGAAACA+TGG | + | chr4.1:4469014-4469033 | MS.gene06084:intron | 25.0% |
| !!! | TGAACCTTTTTTGTACATAA+TGG | + | chr4.1:4469878-4469897 | MS.gene06084:intron | 25.0% |
| AAGGAAACCTACTTTAGATA+TGG | - | chr4.1:4470198-4470217 | None:intergenic | 30.0% | |
| ACTACTAAAGTTACATGAGA+AGG | - | chr4.1:4469806-4469825 | None:intergenic | 30.0% | |
| ATGAACAATGGAAAGGTTAA+AGG | - | chr4.1:4469418-4469437 | None:intergenic | 30.0% | |
| ATTGAAGGAGGATAAATGTA+TGG | - | chr4.1:4470013-4470032 | None:intergenic | 30.0% | |
| CATTTAAACTGTTTGACCTT+GGG | + | chr4.1:4469357-4469376 | MS.gene06084:CDS | 30.0% | |
| CCCTCATACAATTGTAATTA+TGG | + | chr4.1:4468981-4469000 | MS.gene06084:intron | 30.0% | |
| GAAAATGATGAACAATGGAA+AGG | - | chr4.1:4469425-4469444 | None:intergenic | 30.0% | |
| GAAACTATAGAAATTGAAGG+AGG | - | chr4.1:4470025-4470044 | None:intergenic | 30.0% | |
| GAGGAAACTATAGAAATTGA+AGG | - | chr4.1:4470028-4470047 | None:intergenic | 30.0% | |
| TAATCATATATGAGCCTGTT+TGG | - | chr4.1:4468484-4468503 | None:intergenic | 30.0% | |
| TATACATGTCAGATTTCTTG+TGG | + | chr4.1:4468519-4468538 | MS.gene06084:intron | 30.0% | |
| TCCATTGTCTAAAAAAGATC+AGG | - | chr4.1:4470081-4470100 | None:intergenic | 30.0% | |
| ! | CACATCTTCAATCTAAAGTA+TGG | + | chr4.1:4468358-4468377 | MS.gene06084:intron | 30.0% |
| ! | TGTGCCATTATGTACAAAAA+AGG | - | chr4.1:4469885-4469904 | None:intergenic | 30.0% |
| !! | GATTGTTCTTGCTTAGTTTT+TGG | - | chr4.1:4468152-4468171 | None:intergenic | 30.0% |
| !!! | TGATCTTTTTTAGACAATGG+AGG | + | chr4.1:4470080-4470099 | MS.gene06084:intron | 30.0% |
| !!! | TTGTGGTTTTAACTCTGATT+TGG | + | chr4.1:4468536-4468555 | MS.gene06084:intron | 30.0% |
| !!! | TTTTGACTTTTAGTCACTCA+TGG | - | chr4.1:4468429-4468448 | None:intergenic | 30.0% |
| AACATTTGCTCAAACCAAAC+AGG | + | chr4.1:4468467-4468486 | MS.gene06084:intron | 35.0% | |
| AAGCTAAGAAAACTGAATGC+AGG | + | chr4.1:4469137-4469156 | MS.gene06084:intron | 35.0% | |
| ACTCAAGTATGATGACAGTT+AGG | - | chr4.1:4468785-4468804 | None:intergenic | 35.0% | |
| CAAGACAATTTATTTGCAGG+AGG | + | chr4.1:4468847-4468866 | MS.gene06084:intron | 35.0% | |
| CAGTAACTGTCAAATGGTAA+AGG | - | chr4.1:4468567-4468586 | None:intergenic | 35.0% | |
| CATGTATAGAACTATAGCAG+CGG | - | chr4.1:4468507-4468526 | None:intergenic | 35.0% | |
| CATTCACAGTAACTGTCAAA+TGG | - | chr4.1:4468573-4468592 | None:intergenic | 35.0% | |
| CGATATTGTTGAATCCATTG+TGG | + | chr4.1:4469964-4469983 | MS.gene06084:CDS | 35.0% | |
| CGTCAAGACAATTTATTTGC+AGG | + | chr4.1:4468844-4468863 | MS.gene06084:intron | 35.0% | |
| CTCAATTGAATCTCTCTTCA+CGG | + | chr4.1:4468401-4468420 | MS.gene06084:intron | 35.0% | |
| CTTTAGATTGAAGATGTGTC+TGG | - | chr4.1:4468356-4468375 | None:intergenic | 35.0% | |
| GCATTTAAACTGTTTGACCT+TGG | + | chr4.1:4469356-4469375 | MS.gene06084:CDS | 35.0% | |
| GTCATGATCTTAAGAAGAGA+AGG | - | chr4.1:4470171-4470190 | None:intergenic | 35.0% | |
| TGTTGAATCCATTGTGGAAA+AGG | + | chr4.1:4469970-4469989 | MS.gene06084:CDS | 35.0% | |
| TTCTTCTCTTCAGATGTCTT+TGG | - | chr4.1:4469240-4469259 | None:intergenic | 35.0% | |
| TTTGACAGTTACTGTGAATG+AGG | + | chr4.1:4468573-4468592 | MS.gene06084:intron | 35.0% | |
| ! | AAATTGATTCTGTGCACGTT+TGG | - | chr4.1:4469599-4469618 | None:intergenic | 35.0% |
| ! | CGTAACGGAGTAATTGAATT+TGG | + | chr4.1:4469183-4469202 | MS.gene06084:CDS | 35.0% |
| ! | GGTCTTATATTTAAGGACAG+AGG | + | chr4.1:4469754-4469773 | MS.gene06084:intron | 35.0% |
| ! | GTTAAGAACCTTTTCCACAA+TGG | - | chr4.1:4469981-4470000 | None:intergenic | 35.0% |
| ! | TATTTCTGAAAAGTGCGAGT+TGG | - | chr4.1:4468877-4468896 | None:intergenic | 35.0% |
| !!! | GCCTGATCTTTTTTAGACAA+TGG | + | chr4.1:4470077-4470096 | MS.gene06084:intron | 35.0% |
| !!! | TCTTTTTTAGACAATGGAGG+AGG | + | chr4.1:4470083-4470102 | MS.gene06084:intron | 35.0% |
| AAATGAATGTTGTGCCTGTC+AGG | + | chr4.1:4470307-4470326 | MS.gene06084:intron | 40.0% | |
| AATGAATGTTGTGCCTGTCA+GGG | + | chr4.1:4470308-4470327 | MS.gene06084:intron | 40.0% | |
| AGGAGATGGGAAGATTGATA+TGG | + | chr4.1:4470116-4470135 | MS.gene06084:CDS | 40.0% | |
| AGTTACTGTGAATGAGGTTG+AGG | + | chr4.1:4468579-4468598 | MS.gene06084:intron | 40.0% | |
| GGAAGATTGATATGGAAGAG+TGG | + | chr4.1:4470124-4470143 | MS.gene06084:CDS | 40.0% | |
| GTACTTACATGATGTCTCCA+AGG | - | chr4.1:4468186-4468205 | None:intergenic | 40.0% | |
| TAATGGCACACTGAAGTTGA+AGG | + | chr4.1:4469895-4469914 | MS.gene06084:intron | 40.0% | |
| ! | AGGTTGACTCAAAAGGAGAT+GGG | + | chr4.1:4470103-4470122 | MS.gene06084:CDS | 40.0% |
| ! | GACTCTGCCATATCTAAAGT+AGG | + | chr4.1:4470188-4470207 | MS.gene06084:intron | 40.0% |
| ! | GCAGCTTTGACAAAATCACA+TGG | + | chr4.1:4469463-4469482 | MS.gene06084:intron | 40.0% |
| !! | ATTCTGTGCACGTTTGGTTT+TGG | - | chr4.1:4469593-4469612 | None:intergenic | 40.0% |
| !!! | TTCTGTGCACGTTTGGTTTT+GGG | - | chr4.1:4469592-4469611 | None:intergenic | 40.0% |
| ACAATCCTCCATTCTTGCCT+TGG | + | chr4.1:4468166-4468185 | MS.gene06084:CDS | 45.0% | |
| AGCAGAATCTACTTGCAAGC+AGG | + | chr4.1:4468903-4468922 | MS.gene06084:CDS | 45.0% | |
| CACACTGAAGTTGAAGGAGA+TGG | + | chr4.1:4469901-4469920 | MS.gene06084:intron | 45.0% | |
| CTCGCTATGCTCAATGTATC+CGG | - | chr4.1:4469387-4469406 | None:intergenic | 45.0% | |
| GAAGTTGAAGGAGATGGTCT+TGG | + | chr4.1:4469907-4469926 | MS.gene06084:intron | 45.0% | |
| GCAGAATCTACTTGCAAGCA+GGG | + | chr4.1:4468904-4468923 | MS.gene06084:CDS | 45.0% | |
| GCCATAGTTATATCCCTGAC+AGG | - | chr4.1:4470324-4470343 | None:intergenic | 45.0% | |
| GCCTGTCAGGGATATAACTA+TGG | + | chr4.1:4470320-4470339 | MS.gene06084:intron | 45.0% | |
| TCGGTGTGCAAAACAAAGCT+GGG | - | chr4.1:4470351-4470370 | None:intergenic | 45.0% | |
| TGATGTCTCCAAGGCAAGAA+TGG | - | chr4.1:4468177-4468196 | None:intergenic | 45.0% | |
| ! | ACCCTTTAGGAGATAGAGTG+CGG | + | chr4.1:4469523-4469542 | MS.gene06084:intron | 45.0% |
| ! | ATGGAGGAGGTTGACTCAAA+AGG | + | chr4.1:4470096-4470115 | MS.gene06084:CDS | 45.0% |
| ! | GAGGTTGACTCAAAAGGAGA+TGG | + | chr4.1:4470102-4470121 | MS.gene06084:CDS | 45.0% |
| !! | TGATGATGGCTGCATTCACA+AGG | + | chr4.1:4468642-4468661 | MS.gene06084:CDS | 45.0% |
| !!! | TCTGTGCACGTTTGGTTTTG+GGG | - | chr4.1:4469591-4469610 | None:intergenic | 45.0% |
| !!! | TTTGGTTTTGGGGGTAGCAT+TGG | - | chr4.1:4469581-4469600 | None:intergenic | 45.0% |
| ACCCGCACTCTATCTCCTAA+AGG | - | chr4.1:4469528-4469547 | None:intergenic | 50.0% | |
| AGAGTGCGGGTTTGGATTCA+CGG | + | chr4.1:4469537-4469556 | MS.gene06084:intron | 50.0% | |
| CAATGTATCCGGTCTTCCCA+AGG | - | chr4.1:4469376-4469395 | None:intergenic | 50.0% | |
| CCCGCACTCTATCTCCTAAA+GGG | - | chr4.1:4469527-4469546 | None:intergenic | 50.0% | |
| CGGATACATTGAGCATAGCG+AGG | + | chr4.1:4469385-4469404 | MS.gene06084:CDS | 50.0% | |
| CTGTTTGACCTTGGGAAGAC+CGG | + | chr4.1:4469365-4469384 | MS.gene06084:CDS | 50.0% | |
| TAGGAGATAGAGTGCGGGTT+TGG | + | chr4.1:4469529-4469548 | MS.gene06084:intron | 50.0% | |
| TGTCTCCAAGGCAAGAATGG+AGG | - | chr4.1:4468174-4468193 | None:intergenic | 50.0% | |
| ! | CCCTTTAGGAGATAGAGTGC+GGG | + | chr4.1:4469524-4469543 | MS.gene06084:intron | 50.0% |
| ! | CTCGGTGTGCAAAACAAAGC+TGG | - | chr4.1:4470352-4470371 | None:intergenic | 50.0% |
| !!! | CAGCTTTGTTTTGCACACCG+AGG | + | chr4.1:4470350-4470369 | MS.gene06084:CDS | 50.0% |
| !!! | CTGTGCACGTTTGGTTTTGG+GGG | - | chr4.1:4469590-4469609 | None:intergenic | 50.0% |
| !!! | CTTTGTTTTGCACACCGAGG+TGG | + | chr4.1:4470353-4470372 | MS.gene06084:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 4468137 | 4470383 | 4468137 | ID=MS.gene06084 |
| chr4.1 | mRNA | 4468137 | 4470383 | 4468137 | ID=MS.gene06084.t1;Parent=MS.gene06084 |
| chr4.1 | exon | 4468137 | 4468197 | 4468137 | ID=MS.gene06084.t1.exon1;Parent=MS.gene06084.t1 |
| chr4.1 | CDS | 4468137 | 4468197 | 4468137 | ID=cds.MS.gene06084.t1;Parent=MS.gene06084.t1 |
| chr4.1 | exon | 4468581 | 4468663 | 4468581 | ID=MS.gene06084.t1.exon2;Parent=MS.gene06084.t1 |
| chr4.1 | CDS | 4468581 | 4468663 | 4468581 | ID=cds.MS.gene06084.t1;Parent=MS.gene06084.t1 |
| chr4.1 | exon | 4468866 | 4468925 | 4468866 | ID=MS.gene06084.t1.exon3;Parent=MS.gene06084.t1 |
| chr4.1 | CDS | 4468866 | 4468925 | 4468866 | ID=cds.MS.gene06084.t1;Parent=MS.gene06084.t1 |
| chr4.1 | exon | 4469159 | 4469267 | 4469159 | ID=MS.gene06084.t1.exon4;Parent=MS.gene06084.t1 |
| chr4.1 | CDS | 4469159 | 4469267 | 4469159 | ID=cds.MS.gene06084.t1;Parent=MS.gene06084.t1 |
| chr4.1 | exon | 4469354 | 4469406 | 4469354 | ID=MS.gene06084.t1.exon5;Parent=MS.gene06084.t1 |
| chr4.1 | CDS | 4469354 | 4469406 | 4469354 | ID=cds.MS.gene06084.t1;Parent=MS.gene06084.t1 |
| chr4.1 | exon | 4469911 | 4469991 | 4469911 | ID=MS.gene06084.t1.exon6;Parent=MS.gene06084.t1 |
| chr4.1 | CDS | 4469911 | 4469991 | 4469911 | ID=cds.MS.gene06084.t1;Parent=MS.gene06084.t1 |
| chr4.1 | exon | 4470093 | 4470205 | 4470093 | ID=MS.gene06084.t1.exon7;Parent=MS.gene06084.t1 |
| chr4.1 | CDS | 4470093 | 4470205 | 4470093 | ID=cds.MS.gene06084.t1;Parent=MS.gene06084.t1 |
| chr4.1 | exon | 4470329 | 4470383 | 4470329 | ID=MS.gene06084.t1.exon8;Parent=MS.gene06084.t1 |
| chr4.1 | CDS | 4470329 | 4470383 | 4470329 | ID=cds.MS.gene06084.t1;Parent=MS.gene06084.t1 |
| Gene Sequence |
| Protein sequence |
