Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69363.t1 | XP_003603827.1 | 98.2 | 280 | 5 | 0 | 1 | 280 | 1 | 280 | 3.30E-146 | 527.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69363.t1 | Q9LN20 | 72.3 | 249 | 62 | 1 | 39 | 280 | 39 | 287 | 5.7e-107 | 388.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69363.t1 | G7J5W0 | 98.2 | 280 | 5 | 0 | 1 | 280 | 1 | 280 | 2.4e-146 | 527.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene69363 | 0.823407 | 1.41E-53 | -1.69E-46 |
| MS.gene050780 | MS.gene69363 | 0.807571 | 4.74E-50 | -1.69E-46 |
| MS.gene051492 | MS.gene69363 | 0.80185 | 7.41E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene69363 | 0.800212 | 1.60E-48 | -1.69E-46 |
| MS.gene052582 | MS.gene69363 | 0.803555 | 3.30E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene69363 | 0.812847 | 3.45E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene69363 | 0.800506 | 1.40E-48 | -1.69E-46 |
| MS.gene054222 | MS.gene69363 | 0.814228 | 1.71E-51 | -1.69E-46 |
| MS.gene054576 | MS.gene69363 | 0.837608 | 4.70E-57 | -1.69E-46 |
| MS.gene056091 | MS.gene69363 | 0.807601 | 4.67E-50 | -1.69E-46 |
| MS.gene060365 | MS.gene69363 | 0.807443 | 5.04E-50 | -1.69E-46 |
| MS.gene060521 | MS.gene69363 | 0.813943 | 1.98E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69363.t1 | MTR_3g114670 | 98.571 | 280 | 4 | 0 | 1 | 280 | 1 | 280 | 0.0 | 572 |
| MS.gene69363.t1 | MTR_5g022960 | 65.979 | 291 | 86 | 3 | 1 | 280 | 1 | 289 | 3.13e-143 | 404 |
| MS.gene69363.t1 | MTR_8g074810 | 61.702 | 282 | 102 | 3 | 1 | 280 | 1 | 278 | 7.40e-125 | 357 |
| MS.gene69363.t1 | MTR_8g074880 | 61.594 | 276 | 103 | 2 | 7 | 280 | 52 | 326 | 9.70e-123 | 353 |
| MS.gene69363.t1 | MTR_8g074890 | 71.759 | 216 | 61 | 0 | 63 | 278 | 60 | 275 | 2.42e-122 | 350 |
| MS.gene69363.t1 | MTR_8g074830 | 59.286 | 280 | 111 | 2 | 1 | 278 | 1 | 279 | 5.63e-119 | 342 |
| MS.gene69363.t1 | MTR_3g114590 | 72.851 | 221 | 54 | 1 | 60 | 280 | 55 | 269 | 1.78e-112 | 337 |
| MS.gene69363.t1 | MTR_3g114590 | 63.590 | 195 | 50 | 2 | 86 | 280 | 293 | 466 | 1.12e-71 | 231 |
| MS.gene69363.t1 | MTR_3g114610 | 66.222 | 225 | 71 | 1 | 56 | 280 | 83 | 302 | 3.28e-107 | 313 |
| MS.gene69363.t1 | MTR_8g074870 | 63.964 | 222 | 66 | 2 | 59 | 280 | 18 | 225 | 1.38e-106 | 309 |
| MS.gene69363.t1 | MTR_6g009440 | 55.000 | 240 | 106 | 2 | 40 | 279 | 23 | 260 | 4.34e-89 | 267 |
| MS.gene69363.t1 | MTR_5g022960 | 60.488 | 205 | 68 | 3 | 1 | 194 | 1 | 203 | 2.50e-84 | 251 |
| MS.gene69363.t1 | MTR_2g020800 | 49.027 | 257 | 114 | 3 | 27 | 278 | 9 | 253 | 1.83e-81 | 248 |
| MS.gene69363.t1 | MTR_2g020800 | 49.027 | 257 | 112 | 4 | 27 | 278 | 9 | 251 | 2.30e-81 | 247 |
| MS.gene69363.t1 | MTR_4g118560 | 55.502 | 209 | 91 | 1 | 72 | 278 | 40 | 248 | 4.25e-80 | 244 |
| MS.gene69363.t1 | MTR_1g116810 | 53.589 | 209 | 83 | 3 | 70 | 273 | 76 | 275 | 3.49e-70 | 218 |
| MS.gene69363.t1 | MTR_4g095370 | 46.445 | 211 | 100 | 8 | 70 | 274 | 86 | 289 | 1.59e-55 | 181 |
| MS.gene69363.t1 | MTR_3g051200 | 65.185 | 135 | 45 | 2 | 84 | 217 | 25 | 158 | 5.40e-54 | 172 |
| MS.gene69363.t1 | MTR_5g016090 | 43.269 | 208 | 109 | 5 | 70 | 273 | 84 | 286 | 4.97e-50 | 167 |
| MS.gene69363.t1 | MTR_6g053720 | 34.866 | 261 | 148 | 8 | 16 | 276 | 3 | 241 | 1.04e-37 | 135 |
| MS.gene69363.t1 | MTR_4g095370 | 42.742 | 124 | 64 | 5 | 70 | 188 | 86 | 207 | 5.57e-23 | 94.0 |
| MS.gene69363.t1 | MTR_4g095370 | 39.716 | 141 | 70 | 6 | 70 | 205 | 86 | 216 | 7.94e-23 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69363.t1 | AT1G20270 | 69.204 | 289 | 78 | 3 | 1 | 280 | 1 | 287 | 1.08e-149 | 420 |
| MS.gene69363.t1 | AT5G66060 | 66.667 | 288 | 88 | 2 | 1 | 280 | 2 | 289 | 1.75e-143 | 405 |
| MS.gene69363.t1 | AT2G17720 | 68.421 | 247 | 70 | 2 | 42 | 280 | 45 | 291 | 9.46e-129 | 367 |
| MS.gene69363.t1 | AT4G35810 | 60.900 | 289 | 102 | 1 | 1 | 278 | 1 | 289 | 8.42e-126 | 360 |
| MS.gene69363.t1 | AT4G35810 | 60.900 | 289 | 102 | 1 | 1 | 278 | 1 | 289 | 8.42e-126 | 360 |
| MS.gene69363.t1 | AT5G66060 | 63.136 | 236 | 77 | 3 | 1 | 228 | 2 | 235 | 1.00e-105 | 307 |
| MS.gene69363.t1 | AT1G20270 | 63.547 | 203 | 63 | 3 | 1 | 194 | 1 | 201 | 7.67e-89 | 263 |
| MS.gene69363.t1 | AT1G20270 | 63.547 | 203 | 63 | 3 | 1 | 194 | 1 | 201 | 7.67e-89 | 263 |
| MS.gene69363.t1 | AT3G28480 | 47.893 | 261 | 134 | 2 | 19 | 279 | 7 | 265 | 4.81e-84 | 254 |
| MS.gene69363.t1 | AT5G18900 | 51.339 | 224 | 102 | 2 | 57 | 278 | 30 | 248 | 5.60e-79 | 241 |
| MS.gene69363.t1 | AT3G06300 | 54.545 | 209 | 93 | 1 | 72 | 278 | 41 | 249 | 6.37e-78 | 238 |
| MS.gene69363.t1 | AT3G28490 | 55.238 | 210 | 88 | 3 | 72 | 278 | 35 | 241 | 4.02e-77 | 236 |
| MS.gene69363.t1 | AT3G28480 | 44.238 | 269 | 140 | 4 | 19 | 279 | 7 | 273 | 3.83e-72 | 224 |
| MS.gene69363.t1 | AT2G43080 | 55.072 | 207 | 85 | 2 | 70 | 274 | 78 | 278 | 8.34e-71 | 220 |
| MS.gene69363.t1 | AT4G35820 | 55.000 | 200 | 60 | 3 | 66 | 257 | 85 | 262 | 1.31e-70 | 219 |
| MS.gene69363.t1 | AT4G33910 | 43.062 | 209 | 110 | 5 | 70 | 274 | 79 | 282 | 4.70e-51 | 169 |
| MS.gene69363.t1 | AT2G23096 | 39.130 | 207 | 122 | 2 | 72 | 278 | 71 | 273 | 4.66e-44 | 151 |
| MS.gene69363.t1 | AT4G25600 | 34.483 | 203 | 107 | 4 | 72 | 274 | 62 | 238 | 3.30e-28 | 110 |
| MS.gene69363.t1 | AT2G43080 | 57.609 | 92 | 37 | 1 | 70 | 159 | 78 | 169 | 7.79e-27 | 103 |
| MS.gene69363.t1 | AT4G25600 | 33.668 | 199 | 104 | 4 | 77 | 274 | 6 | 177 | 3.51e-25 | 100 |
| MS.gene69363.t1 | AT4G25600 | 33.668 | 199 | 104 | 4 | 77 | 274 | 3 | 174 | 4.09e-25 | 100 |
| MS.gene69363.t1 | AT4G25600 | 33.668 | 199 | 104 | 4 | 77 | 274 | 15 | 186 | 4.13e-25 | 100 |
Find 61 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTCTCCTTTCAATATTC+TGG | 0.147205 | 3.3:+93613684 | None:intergenic |
| CTTGAGGAGTACAAAGTTTA+AGG | 0.187091 | 3.3:-93612449 | None:intergenic |
| CAAATGCTCACATTCTTCTT+TGG | 0.212251 | 3.3:+93613971 | None:intergenic |
| AAAGAATCATCGGTTGTATT+AGG | 0.249163 | 3.3:+93616223 | None:intergenic |
| CATTTATTTCCTACAATTAC+TGG | 0.270348 | 3.3:+93612494 | None:intergenic |
| CAATCTGGCCAAGCCTTTCT+TGG | 0.284247 | 3.3:-93613946 | MS.gene69363:CDS |
| TGGGTGATGCTCTGCTGTTT+TGG | 0.327708 | 3.3:-93612829 | MS.gene69363:CDS |
| AGGTTCTTCACTATGGAGTT+GGG | 0.328228 | 3.3:-93613162 | MS.gene69363:CDS |
| CAGTAATTGTAGGAAATAAA+TGG | 0.333015 | 3.3:-93612493 | MS.gene69363:CDS |
| TGTAGGGTTCGAACTAGTTC+AGG | 0.378613 | 3.3:-93613740 | MS.gene69363:intron |
| TAGTCCCTAACCGTGTAAAC+TGG | 0.387706 | 3.3:+93612775 | None:intergenic |
| GGACTTCAGGTTCTTCACTA+TGG | 0.397926 | 3.3:-93613169 | MS.gene69363:CDS |
| CAGGTTCTTCACTATGGAGT+TGG | 0.417299 | 3.3:-93613163 | MS.gene69363:CDS |
| ATCATCCTTCTTCTTGCGCT+CGG | 0.436354 | 3.3:-93616259 | MS.gene69363:CDS |
| AGAGAATGGGGAGGGACTTC+AGG | 0.439161 | 3.3:-93613182 | MS.gene69363:CDS |
| AGTGGACTGAAATTCTTTCA+TGG | 0.440521 | 3.3:-93616061 | MS.gene69363:CDS |
| ATGTGAGCATTTGATCAATC+TGG | 0.447007 | 3.3:-93613961 | MS.gene69363:CDS |
| TTTATCTGAATGTGCTAGAA+AGG | 0.451929 | 3.3:-93612873 | MS.gene69363:CDS |
| CGCCTTAGCAGCAGGAAATA+CGG | 0.458610 | 3.3:+93612925 | None:intergenic |
| GGCGGTTGCCCAGTAATTGT+AGG | 0.473809 | 3.3:-93612503 | MS.gene69363:CDS |
| GATGAGTTCAACACTAAGAA+TGG | 0.491873 | 3.3:-93613106 | MS.gene69363:CDS |
| AGTGTCGTCGATAGCAAGAC+TGG | 0.497602 | 3.3:-93613915 | MS.gene69363:CDS |
| GTATTCCGAGCGCAAGAAGA+AGG | 0.498036 | 3.3:+93616254 | None:intergenic |
| TTTCAGTCCGGCGGAAAAGA+AGG | 0.501427 | 3.3:-93616087 | MS.gene69363:intron |
| CTAAAGTTCGCCTTAGCAGC+AGG | 0.503205 | 3.3:+93612917 | None:intergenic |
| CGTAGGTCTGACGTTGAAGA+AGG | 0.509166 | 3.3:-93612956 | MS.gene69363:intron |
| GACCGTATTTCCTGCTGCTA+AGG | 0.509841 | 3.3:-93612927 | MS.gene69363:CDS |
| ACTCATACCTACTGGTATGA+AGG | 0.511725 | 3.3:+93613652 | None:intergenic |
| CGTATGCTTTCCTTTCGCCA+TGG | 0.513545 | 3.3:+93616351 | None:intergenic |
| GATGCATCTAGTGTGGCATC+TGG | 0.515596 | 3.3:+93612797 | None:intergenic |
| ATTTATTTCCTACAATTACT+GGG | 0.516066 | 3.3:+93612495 | None:intergenic |
| TCTTAGTGTTGAACTCATCA+AGG | 0.522896 | 3.3:+93613110 | None:intergenic |
| CTGGAAAGAGTACAGAAAGC+AGG | 0.529807 | 3.3:-93613896 | MS.gene69363:intron |
| TTGTGATAGACGAAAGCTCT+AGG | 0.531458 | 3.3:+93616035 | None:intergenic |
| GTGGACTGAAATTCTTTCAT+GGG | 0.532971 | 3.3:-93616060 | MS.gene69363:CDS |
| AATTTCTTCACCGGTGAACG+TGG | 0.534743 | 3.3:+93616325 | None:intergenic |
| ATCTGTGATTAAAGAATCAT+CGG | 0.538500 | 3.3:+93616213 | None:intergenic |
| TTATCTGAATGTGCTAGAAA+GGG | 0.543737 | 3.3:-93612872 | MS.gene69363:CDS |
| AACGTCGATAATTTCTTCAC+CGG | 0.549802 | 3.3:+93616316 | None:intergenic |
| GGTTCTTCACTATGGAGTTG+GGG | 0.555410 | 3.3:-93613161 | MS.gene69363:CDS |
| GCATACGCATCCACGTTCAC+CGG | 0.560833 | 3.3:-93616335 | MS.gene69363:CDS |
| CTAGATGCATCCAGTTTACA+CGG | 0.571154 | 3.3:-93612785 | MS.gene69363:intron |
| TCAGGAATGTTTCTGAAGAG+AGG | 0.571415 | 3.3:-93613722 | MS.gene69363:CDS |
| TCAAGGAAGTAATCATAATG+AGG | 0.573011 | 3.3:+93613127 | None:intergenic |
| TAAGAACTGTTGCAACTCGT+TGG | 0.593280 | 3.3:+93613080 | None:intergenic |
| AAATATGCAGAGAATGGGGA+GGG | 0.595346 | 3.3:-93613190 | MS.gene69363:intron |
| CGAACTTTAGTTCTGTGCCA+TGG | 0.597280 | 3.3:-93612904 | MS.gene69363:CDS |
| TAAATATGCAGAGAATGGGG+AGG | 0.604063 | 3.3:-93613191 | MS.gene69363:intron |
| AATTTCAAAACCATGGCGAA+AGG | 0.604810 | 3.3:-93616361 | None:intergenic |
| AACAAAGTGGATGCATCTTG+AGG | 0.607113 | 3.3:-93612465 | MS.gene69363:CDS |
| ATCGACGCAAAATCTATGAA+AGG | 0.610874 | 3.3:-93616192 | MS.gene69363:intron |
| AATGTTTCTGAAGAGAGGAA+AGG | 0.618883 | 3.3:-93613717 | MS.gene69363:CDS |
| TGGAATTGGTTTCAGTCCGG+CGG | 0.622476 | 3.3:-93616096 | MS.gene69363:intron |
| AAATTATCCAGAATATTGAA+AGG | 0.636890 | 3.3:-93613691 | MS.gene69363:CDS |
| ATAAATGGTCTGCAACAAAG+TGG | 0.639282 | 3.3:-93612478 | MS.gene69363:CDS |
| GAGTTCAACACTAAGAATGG+AGG | 0.669587 | 3.3:-93613103 | MS.gene69363:CDS |
| ACTTTAGTTCTGTGCCATGG+TGG | 0.689054 | 3.3:-93612901 | MS.gene69363:CDS |
| CGGCGGAAAAGAAGGAACAG+TGG | 0.698387 | 3.3:-93616079 | MS.gene69363:CDS |
| AGGTCTGACGTTGAAGAAGG+CGG | 0.698975 | 3.3:-93612953 | MS.gene69363:CDS |
| TAAACTGGATGCATCTAGTG+TGG | 0.703325 | 3.3:+93612790 | None:intergenic |
| TCAGATAAATCATTCCACCA+TGG | 0.719207 | 3.3:+93612887 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATACTAATAAAATTGA+AGG | - | chr3.3:93613978-93613997 | MS.gene69363:intron | 10.0% |
| !!! | AATTTGTTAATTTGTTAATT+GGG | + | chr3.3:93614077-93614096 | None:intergenic | 10.0% |
| !! | AAAAAATGATCTACAATTAT+TGG | + | chr3.3:93614964-93614983 | None:intergenic | 15.0% |
| !! | ATATTCTAAATTCACAATTT+AGG | + | chr3.3:93613024-93613043 | None:intergenic | 15.0% |
| !!! | GAATTTGTTAATTTGTTAAT+TGG | + | chr3.3:93614078-93614097 | None:intergenic | 15.0% |
| !! | AAATGCTTATATGAATGATT+AGG | - | chr3.3:93613054-93613073 | MS.gene69363:intron | 20.0% |
| !! | AAATTATCCAGAATATTGAA+AGG | - | chr3.3:93615109-93615128 | MS.gene69363:intron | 20.0% |
| !! | AATTTATGGAAAGAGAATAA+GGG | + | chr3.3:93615758-93615777 | None:intergenic | 20.0% |
| !! | ATTAATTTATCTTTGCTTTC+AGG | - | chr3.3:93616276-93616295 | MS.gene69363:CDS | 20.0% |
| !! | ATTCATTAAATCAGAAAGAA+AGG | - | chr3.3:93613595-93613614 | MS.gene69363:intron | 20.0% |
| !! | ATTTATTTCCTACAATTACT+GGG | + | chr3.3:93616308-93616327 | None:intergenic | 20.0% |
| !! | CAAAACATTAACAATTAACA+AGG | - | chr3.3:93614044-93614063 | MS.gene69363:intron | 20.0% |
| !!! | AGTGACTTTTATTTCAAATT+AGG | + | chr3.3:93613927-93613946 | None:intergenic | 20.0% |
| !!! | TAGTTTTTGTTATCTTTTCA+TGG | - | chr3.3:93612797-93612816 | MS.gene69363:CDS | 20.0% |
| !!! | TGAATTTTGAGTAATGTTAA+AGG | + | chr3.3:93613895-93613914 | None:intergenic | 20.0% |
| !!! | TTTATTTTTGACAAACACAT+AGG | + | chr3.3:93615514-93615533 | None:intergenic | 20.0% |
| ! | ACAAAAAAAAACTCAAGCAA+AGG | + | chr3.3:93614934-93614953 | None:intergenic | 25.0% |
| ! | ACTAAATTGTATGAAGATAG+AGG | - | chr3.3:93614578-93614597 | MS.gene69363:intron | 25.0% |
| ! | AGAAAACAGAAAACTAACTA+TGG | + | chr3.3:93613286-93613305 | None:intergenic | 25.0% |
| ! | AGTTTCATGAGTTTAGATTT+GGG | + | chr3.3:93615465-93615484 | None:intergenic | 25.0% |
| ! | ATAATATCAATCAATCGCAA+TGG | - | chr3.3:93613092-93613111 | MS.gene69363:CDS | 25.0% |
| ! | ATCTGTGATTAAAGAATCAT+CGG | + | chr3.3:93612590-93612609 | None:intergenic | 25.0% |
| ! | ATGACTCAAATTCAAACAAT+CGG | + | chr3.3:93613383-93613402 | None:intergenic | 25.0% |
| ! | CAATTTATGGAAAGAGAATA+AGG | + | chr3.3:93615759-93615778 | None:intergenic | 25.0% |
| ! | CAGTAATTGTAGGAAATAAA+TGG | - | chr3.3:93616307-93616326 | MS.gene69363:CDS | 25.0% |
| ! | CATTTATTTCCTACAATTAC+TGG | + | chr3.3:93616309-93616328 | None:intergenic | 25.0% |
| ! | CTCATGAAACAGTAAATTTA+AGG | - | chr3.3:93615389-93615408 | MS.gene69363:intron | 25.0% |
| ! | CTTATTCTCTTTCCATAAAT+TGG | - | chr3.3:93615757-93615776 | MS.gene69363:intron | 25.0% |
| ! | GCTATAATATGTTCAACATA+AGG | + | chr3.3:93616193-93616212 | None:intergenic | 25.0% |
| ! | GGACTATTAAATACTTTAAC+TGG | - | chr3.3:93616042-93616061 | MS.gene69363:CDS | 25.0% |
| ! | TAAAAGAAAATCTAGGTACA+TGG | - | chr3.3:93614621-93614640 | MS.gene69363:intron | 25.0% |
| ! | TAAATTTACTGTTTCATGAG+AGG | + | chr3.3:93615389-93615408 | None:intergenic | 25.0% |
| ! | TAATATCAATCAATCGCAAT+GGG | - | chr3.3:93613093-93613112 | MS.gene69363:CDS | 25.0% |
| ! | TACATGGAATATTCAGATTA+TGG | - | chr3.3:93614637-93614656 | MS.gene69363:intron | 25.0% |
| ! | TATATGCAGCAACAAAAAAA+AGG | + | chr3.3:93615225-93615244 | None:intergenic | 25.0% |
| ! | TTCGTGATAAAAGAAAATCT+AGG | - | chr3.3:93614614-93614633 | MS.gene69363:intron | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | - | chr3.3:93612880-93612899 | MS.gene69363:CDS | 25.0% |
| !! | ACTTTTAAATATGCAGAGAA+TGG | - | chr3.3:93615604-93615623 | MS.gene69363:intron | 25.0% |
| !! | CTTTTAAATATGCAGAGAAT+GGG | - | chr3.3:93615605-93615624 | MS.gene69363:intron | 25.0% |
| !! | TGTAATTAAAACCGTTTTCA+GGG | + | chr3.3:93614265-93614284 | None:intergenic | 25.0% |
| !! | TTGTAATTAAAACCGTTTTC+AGG | + | chr3.3:93614266-93614285 | None:intergenic | 25.0% |
| !! | TTTTAAATATGCAGAGAATG+GGG | - | chr3.3:93615606-93615625 | MS.gene69363:intron | 25.0% |
| !!! | GCAATAATTAGTTTTCTGTT+TGG | + | chr3.3:93613709-93613728 | None:intergenic | 25.0% |
| !!! | GCTTGAGTTTTTTTTTGTAT+CGG | - | chr3.3:93614936-93614955 | MS.gene69363:intron | 25.0% |
| !!! | TTGTTAATTTGTTAATTGGG+AGG | + | chr3.3:93614074-93614093 | None:intergenic | 25.0% |
| !!! | TTTCGTCTATCACAATTTTT+TGG | - | chr3.3:93612773-93612792 | MS.gene69363:intron | 25.0% |
| !!! | TTTGTTACTTTAAGCTTTAG+AGG | + | chr3.3:93614020-93614039 | None:intergenic | 25.0% |
| AAAGGAAGATACAACTTCTA+TGG | - | chr3.3:93613613-93613632 | MS.gene69363:intron | 30.0% | |
| AAGAACTTAGTCAGAAACAT+TGG | - | chr3.3:93615308-93615327 | MS.gene69363:intron | 30.0% | |
| AATAAGAAGTGAGAAAACCA+AGG | + | chr3.3:93612868-93612887 | None:intergenic | 30.0% | |
| AATGTAATGAGTTAGTGACA+TGG | + | chr3.3:93616215-93616234 | None:intergenic | 30.0% | |
| AATTTATCTTTGCTTTCAGG+CGG | - | chr3.3:93616279-93616298 | MS.gene69363:CDS | 30.0% | |
| ATCGATTGTAACTACTAACT+AGG | - | chr3.3:93613254-93613273 | MS.gene69363:intron | 30.0% | |
| ATGATATTGCATATTCGTCA+AGG | - | chr3.3:93614500-93614519 | MS.gene69363:intron | 30.0% | |
| ATTCAAGGAGGTCAAAAAAT+AGG | + | chr3.3:93616127-93616146 | None:intergenic | 30.0% | |
| CAAACATATCTCATGATTCA+AGG | + | chr3.3:93616142-93616161 | None:intergenic | 30.0% | |
| CAATTCTCCTTTCAATATTC+TGG | + | chr3.3:93615119-93615138 | None:intergenic | 30.0% | |
| CAGTTTCATGAGTTTAGATT+TGG | + | chr3.3:93615466-93615485 | None:intergenic | 30.0% | |
| CTATCACTGAAACCAAAAAT+GGG | - | chr3.3:93615952-93615971 | MS.gene69363:intron | 30.0% | |
| CTTCTAATTTCCAATGGAAT+TGG | + | chr3.3:93616238-93616257 | None:intergenic | 30.0% | |
| TACAAAAATGACCCTGAAAA+CGG | - | chr3.3:93614281-93614300 | MS.gene69363:intron | 30.0% | |
| TATTGGTCAAAAACAATGGA+GGG | - | chr3.3:93612884-93612903 | MS.gene69363:CDS | 30.0% | |
| TCAAAGCTTCTAATTTCCAA+TGG | + | chr3.3:93616244-93616263 | None:intergenic | 30.0% | |
| TCAAGAAAAGGTTTATGGAA+AGG | + | chr3.3:93614992-93615011 | None:intergenic | 30.0% | |
| TCAAGGAAGTAATCATAATG+AGG | + | chr3.3:93615676-93615695 | None:intergenic | 30.0% | |
| TCATTACATTCCAATTCCAT+TGG | - | chr3.3:93616225-93616244 | MS.gene69363:CDS | 30.0% | |
| TCGATTGTAACTACTAACTA+GGG | - | chr3.3:93613255-93613274 | MS.gene69363:intron | 30.0% | |
| TCTATCACTGAAACCAAAAA+TGG | - | chr3.3:93615951-93615970 | MS.gene69363:intron | 30.0% | |
| TCTCTTTCCATAAATTGGTT+TGG | - | chr3.3:93615762-93615781 | MS.gene69363:intron | 30.0% | |
| TGACTCAAATTCAAACAATC+GGG | + | chr3.3:93613382-93613401 | None:intergenic | 30.0% | |
| TTATCTGAATGTGCTAGAAA+GGG | - | chr3.3:93615928-93615947 | MS.gene69363:intron | 30.0% | |
| TTATTGGTCAAAAACAATGG+AGG | - | chr3.3:93612883-93612902 | MS.gene69363:CDS | 30.0% | |
| TTTATCTGAATGTGCTAGAA+AGG | - | chr3.3:93615927-93615946 | MS.gene69363:intron | 30.0% | |
| ! | AAAGAATCATCGGTTGTATT+AGG | + | chr3.3:93612580-93612599 | None:intergenic | 30.0% |
| ! | ACAATCGATTCTATTGTGTT+TGG | + | chr3.3:93613243-93613262 | None:intergenic | 30.0% |
| ! | ATTCTATTGTGTTTGGGATT+TGG | + | chr3.3:93613236-93613255 | None:intergenic | 30.0% |
| ! | CAATCGATTCTATTGTGTTT+GGG | + | chr3.3:93613242-93613261 | None:intergenic | 30.0% |
| ! | TGTTTGACGTTTGTACATTT+TGG | - | chr3.3:93616156-93616175 | MS.gene69363:intron | 30.0% |
| ! | TTTCTGTTTTCTCTTAGCAT+TGG | - | chr3.3:93613294-93613313 | MS.gene69363:intron | 30.0% |
| !! | TATTTCTTTGAAGTCTTGTG+TGG | - | chr3.3:93614744-93614763 | MS.gene69363:intron | 30.0% |
| !! | TTGGTTTTCTCACTTCTTAT+TGG | - | chr3.3:93612867-93612886 | MS.gene69363:CDS | 30.0% |
| !!! | AACCACTTTTTGACAACTTT+TGG | + | chr3.3:93612960-93612979 | None:intergenic | 30.0% |
| !!! | ACATAGGTTTTAGAACTACT+TGG | + | chr3.3:93615498-93615517 | None:intergenic | 30.0% |
| !!! | GTTTGATTTTGATTCTGCTT+TGG | - | chr3.3:93612643-93612662 | MS.gene69363:intron | 30.0% |
| !!! | TAAACGGTTTTGGAATGAAT+AGG | - | chr3.3:93613563-93613582 | MS.gene69363:intron | 30.0% |
| !!! | TGTTTTGTTATTGTTGCTTC+TGG | - | chr3.3:93612684-93612703 | MS.gene69363:intron | 30.0% |
| AAAAAAAGGCTACGAGACAA+AGG | + | chr3.3:93615211-93615230 | None:intergenic | 35.0% | |
| AAAAAAGGCTACGAGACAAA+GGG | + | chr3.3:93615210-93615229 | None:intergenic | 35.0% | |
| AAAACAATGGAGGGAGAAAA+AGG | - | chr3.3:93612893-93612912 | MS.gene69363:CDS | 35.0% | |
| AACGTCGATAATTTCTTCAC+CGG | + | chr3.3:93612487-93612506 | None:intergenic | 35.0% | |
| AAGATGAAAGCAAGATTCTC+AGG | - | chr3.3:93613457-93613476 | MS.gene69363:intron | 35.0% | |
| ACATATCTCATGATTCAAGG+AGG | + | chr3.3:93616139-93616158 | None:intergenic | 35.0% | |
| ACTCAAATTCAAACAATCGG+GGG | + | chr3.3:93613380-93613399 | None:intergenic | 35.0% | |
| AGATGAAAGCAAGATTCTCA+GGG | - | chr3.3:93613458-93613477 | MS.gene69363:intron | 35.0% | |
| AGCATAAAGTGGGAAAATGA+GGG | + | chr3.3:93613195-93613214 | None:intergenic | 35.0% | |
| AGTTTGAGAGTTAGATTAGC+TGG | + | chr3.3:93613654-93613673 | None:intergenic | 35.0% | |
| ATAAATGGTCTGCAACAAAG+TGG | - | chr3.3:93616322-93616341 | MS.gene69363:CDS | 35.0% | |
| ATCGACGCAAAATCTATGAA+AGG | - | chr3.3:93612608-93612627 | MS.gene69363:intron | 35.0% | |
| ATGAAGATAGAGGTTGTTCT+AGG | - | chr3.3:93614588-93614607 | MS.gene69363:intron | 35.0% | |
| ATGTGAGCATTTGATCAATC+TGG | - | chr3.3:93614839-93614858 | MS.gene69363:intron | 35.0% | |
| CAAATGCTCACATTCTTCTT+TGG | + | chr3.3:93614832-93614851 | None:intergenic | 35.0% | |
| CTTGTAAAGTCTGTAAGCAT+AGG | - | chr3.3:93614540-93614559 | MS.gene69363:intron | 35.0% | |
| GACTCAAATTCAAACAATCG+GGG | + | chr3.3:93613381-93613400 | None:intergenic | 35.0% | |
| GATGAGTTCAACACTAAGAA+TGG | - | chr3.3:93615694-93615713 | MS.gene69363:intron | 35.0% | |
| GTCCAAAAGTTGTCAAAAAG+TGG | - | chr3.3:93612955-93612974 | MS.gene69363:intron | 35.0% | |
| GTCTCTCAAGAAAAGGTTTA+TGG | + | chr3.3:93614997-93615016 | None:intergenic | 35.0% | |
| GTTGTTCAAATTTCTCACCA+TGG | - | chr3.3:93613407-93613426 | MS.gene69363:intron | 35.0% | |
| TACAATCAAGAGATGAAGAG+AGG | - | chr3.3:93614135-93614154 | MS.gene69363:intron | 35.0% | |
| TCAGATAAATCATTCCACCA+TGG | + | chr3.3:93615916-93615935 | None:intergenic | 35.0% | |
| TTTCTGACTAAGTTCTTGAG+AGG | + | chr3.3:93615305-93615324 | None:intergenic | 35.0% | |
| TTTGGACTGTTCACAATGAT+AGG | + | chr3.3:93614814-93614833 | None:intergenic | 35.0% | |
| ! | AATGTTTCTGAAGAGAGGAA+AGG | - | chr3.3:93615083-93615102 | MS.gene69363:intron | 35.0% |
| ! | ACACTTGATTTTGCCAAGAA+AGG | + | chr3.3:93614870-93614889 | None:intergenic | 35.0% |
| ! | GATTTTACCTTCATACCAGT+AGG | - | chr3.3:93615141-93615160 | MS.gene69363:intron | 35.0% |
| ! | GTCACTTAAAACCGTTTTCA+GGG | + | chr3.3:93614243-93614262 | None:intergenic | 35.0% |
| ! | GTGGACTGAAATTCTTTCAT+GGG | - | chr3.3:93612740-93612759 | MS.gene69363:intron | 35.0% |
| ! | GTGTGAGAAATTTTCTCTGA+AGG | + | chr3.3:93613536-93613555 | None:intergenic | 35.0% |
| ! | GTTTGGTTGTTACTTCAGTA+AGG | + | chr3.3:93613692-93613711 | None:intergenic | 35.0% |
| ! | TATCTCAATGTGTCGGTAAT+TGG | - | chr3.3:93615362-93615381 | MS.gene69363:intron | 35.0% |
| ! | TCTTAGTGTTGAACTCATCA+AGG | + | chr3.3:93615693-93615712 | None:intergenic | 35.0% |
| ! | TTCCCTTAAAACCGTTTTCA+GGG | + | chr3.3:93614295-93614314 | None:intergenic | 35.0% |
| ! | TTTCCCTTAAAACCGTTTTC+AGG | + | chr3.3:93614296-93614315 | None:intergenic | 35.0% |
| !! | AGTGGACTGAAATTCTTTCA+TGG | - | chr3.3:93612739-93612758 | MS.gene69363:intron | 35.0% |
| !! | CATCAATTTGTTGACAACCT+TGG | - | chr3.3:93612848-93612867 | MS.gene69363:CDS | 35.0% |
| !! | GTTATTGTTGCTTCTGGAAT+TGG | - | chr3.3:93612690-93612709 | MS.gene69363:intron | 35.0% |
| !! | GTTTTAAGTGACCCTGAAAA+CGG | - | chr3.3:93614251-93614270 | MS.gene69363:intron | 35.0% |
| !!! | TTGTACATTTTGGTACTGAC+TGG | - | chr3.3:93616166-93616185 | MS.gene69363:intron | 35.0% |
| AAAGTCTGTAAGCATAGGCT+AGG | - | chr3.3:93614545-93614564 | MS.gene69363:intron | 40.0% | |
| AAATATGCAGAGAATGGGGA+GGG | - | chr3.3:93615610-93615629 | MS.gene69363:intron | 40.0% | |
| AACAAAGTGGATGCATCTTG+AGG | - | chr3.3:93616335-93616354 | MS.gene69363:CDS | 40.0% | |
| AAGATCTCCTACTCAAACTC+TGG | + | chr3.3:93614687-93614706 | None:intergenic | 40.0% | |
| AAGGTGAGTAGAGCATAAAG+TGG | + | chr3.3:93613206-93613225 | None:intergenic | 40.0% | |
| ACTCATACCTACTGGTATGA+AGG | + | chr3.3:93615151-93615170 | None:intergenic | 40.0% | |
| AGAGATGATGAGATGAGAAG+AGG | - | chr3.3:93614216-93614235 | MS.gene69363:intron | 40.0% | |
| AGATATATCCCCTTCCTGTA+GGG | - | chr3.3:93615044-93615063 | MS.gene69363:intron | 40.0% | |
| AGGTGAGTAGAGCATAAAGT+GGG | + | chr3.3:93613205-93613224 | None:intergenic | 40.0% | |
| AGGTTCTTCACTATGGAGTT+GGG | - | chr3.3:93615638-93615657 | MS.gene69363:intron | 40.0% | |
| ATGGATGAGGAATGAAGAAC+TGG | + | chr3.3:93613344-93613363 | None:intergenic | 40.0% | |
| CAAACAACCAATCATGTAGC+TGG | + | chr3.3:93615560-93615579 | None:intergenic | 40.0% | |
| CACACTGCCAAACCAATTTA+TGG | + | chr3.3:93615772-93615791 | None:intergenic | 40.0% | |
| CAGAGAAAATTTCTCACACC+TGG | - | chr3.3:93613537-93613556 | MS.gene69363:intron | 40.0% | |
| CTAGATGCATCCAGTTTACA+CGG | - | chr3.3:93616015-93616034 | MS.gene69363:intron | 40.0% | |
| CTCAAATTCAAACAATCGGG+GGG | + | chr3.3:93613379-93613398 | None:intergenic | 40.0% | |
| CTTGTGTGGTAGTAAACTGT+TGG | - | chr3.3:93614758-93614777 | MS.gene69363:intron | 40.0% | |
| GAAACTATCATGGATGGATG+AGG | + | chr3.3:93613357-93613376 | None:intergenic | 40.0% | |
| GAAGAGAGGAGAACAAAGAT+GGG | - | chr3.3:93614149-93614168 | MS.gene69363:intron | 40.0% | |
| GACAGTCTATCTCAATGTGT+CGG | - | chr3.3:93615355-93615374 | MS.gene69363:intron | 40.0% | |
| GAGCATAAAGTGGGAAAATG+AGG | + | chr3.3:93613196-93613215 | None:intergenic | 40.0% | |
| GAGTTCAACACTAAGAATGG+AGG | - | chr3.3:93615697-93615716 | MS.gene69363:intron | 40.0% | |
| GCACAAAAACTCATACCTAC+TGG | + | chr3.3:93615159-93615178 | None:intergenic | 40.0% | |
| TAAACTGGATGCATCTAGTG+TGG | + | chr3.3:93616013-93616032 | None:intergenic | 40.0% | |
| TAAATATGCAGAGAATGGGG+AGG | - | chr3.3:93615609-93615628 | MS.gene69363:intron | 40.0% | |
| TAAGAACTGTTGCAACTCGT+TGG | + | chr3.3:93615723-93615742 | None:intergenic | 40.0% | |
| TAAGACTCCAGAGTTTGAGT+AGG | - | chr3.3:93614677-93614696 | MS.gene69363:intron | 40.0% | |
| TAGATATATCCCCTTCCTGT+AGG | - | chr3.3:93615043-93615062 | MS.gene69363:intron | 40.0% | |
| TCTGTATCCAGCTACATGAT+TGG | - | chr3.3:93615550-93615569 | MS.gene69363:intron | 40.0% | |
| TGAAGAGAGGAGAACAAAGA+TGG | - | chr3.3:93614148-93614167 | MS.gene69363:intron | 40.0% | |
| TTGTGATAGACGAAAGCTCT+AGG | + | chr3.3:93612768-93612787 | None:intergenic | 40.0% | |
| TTTACTTTGATCGAGCTCCA+TGG | + | chr3.3:93613427-93613446 | None:intergenic | 40.0% | |
| ! | AAGATAGAGGTTGTTCTAGG+TGG | - | chr3.3:93614591-93614610 | MS.gene69363:intron | 40.0% |
| ! | AATCGCAATGGGTTCACTAA+TGG | - | chr3.3:93613104-93613123 | MS.gene69363:CDS | 40.0% |
| ! | AGTAGCTCTGTTGTCAATAG+AGG | + | chr3.3:93614430-93614449 | None:intergenic | 40.0% |
| ! | GACACTAGTCTCTCAAGAAA+AGG | + | chr3.3:93615004-93615023 | None:intergenic | 40.0% |
| ! | GGTCACTTAAAACCGTTTTC+AGG | + | chr3.3:93614244-93614263 | None:intergenic | 40.0% |
| ! | GGTTGTTACTTCAGTAAGGT+TGG | + | chr3.3:93613688-93613707 | None:intergenic | 40.0% |
| ! | TCAGGAATGTTTCTGAAGAG+AGG | - | chr3.3:93615078-93615097 | MS.gene69363:intron | 40.0% |
| ! | TGACCCTGAAAACGGTTTTA+AGG | - | chr3.3:93614259-93614278 | MS.gene69363:intron | 40.0% |
| ! | TGATTTTGCCAAGAAAGGCT+TGG | + | chr3.3:93614865-93614884 | None:intergenic | 40.0% |
| !! | GAAGAACTGGTTTGAGTTTG+TGG | + | chr3.3:93613331-93613350 | None:intergenic | 40.0% |
| !! | GACCCTGAAAACGGTTTTAA+GGG | - | chr3.3:93614238-93614257 | MS.gene69363:intron | 40.0% |
| !! | GCTTTAGAGGCTTAAAGTGT+TGG | + | chr3.3:93614007-93614026 | None:intergenic | 40.0% |
| !! | TTCTGGAATTGGTTTCAGTC+CGG | - | chr3.3:93612701-93612720 | MS.gene69363:intron | 40.0% |
| !! | TTTCTCTGAAGGTATCAGAG+CGG | + | chr3.3:93613525-93613544 | None:intergenic | 40.0% |
| AATTTCTTCACCGGTGAACG+TGG | + | chr3.3:93612478-93612497 | None:intergenic | 45.0% | |
| AGACCTACGTAAGGAGCAAA+AGG | + | chr3.3:93615833-93615852 | None:intergenic | 45.0% | |
| ATCATCCTTCTTCTTGCGCT+CGG | - | chr3.3:93612541-93612560 | MS.gene69363:intron | 45.0% | |
| CAGGTTCTTCACTATGGAGT+TGG | - | chr3.3:93615637-93615656 | MS.gene69363:intron | 45.0% | |
| CATTTCCGCTTTGACAACAG+AGG | + | chr3.3:93613740-93613759 | None:intergenic | 45.0% | |
| CTACGTAAGGAGCAAAAGGA+GGG | + | chr3.3:93615829-93615848 | None:intergenic | 45.0% | |
| CTGTTGTCAAAGCGGAAATG+CGG | - | chr3.3:93613740-93613759 | MS.gene69363:intron | 45.0% | |
| CTTGAGAGACTAGTGTCTAG+TGG | - | chr3.3:93615007-93615026 | MS.gene69363:intron | 45.0% | |
| GAGATGAGAAGAGGAGAGAT+GGG | - | chr3.3:93614182-93614201 | MS.gene69363:intron | 45.0% | |
| GCATCCAGTTTACACGGTTA+GGG | - | chr3.3:93616021-93616040 | MS.gene69363:intron | 45.0% | |
| GGTTCTTCACTATGGAGTTG+GGG | - | chr3.3:93615639-93615658 | MS.gene69363:intron | 45.0% | |
| GTAGCTGGATACAGAGTGAT+TGG | + | chr3.3:93615545-93615564 | None:intergenic | 45.0% | |
| GTTACTTCAGTAAGGTTGGC+TGG | + | chr3.3:93613684-93613703 | None:intergenic | 45.0% | |
| TAGTCCCTAACCGTGTAAAC+TGG | + | chr3.3:93616028-93616047 | None:intergenic | 45.0% | |
| TAGTTCGAACCCTACAGGAA+GGG | + | chr3.3:93615056-93615075 | None:intergenic | 45.0% | |
| TCACACCTCTGTTGTCAAAG+CGG | - | chr3.3:93613732-93613751 | MS.gene69363:CDS | 45.0% | |
| TCTGCAGATGAGATGAGAAG+AGG | - | chr3.3:93614173-93614192 | MS.gene69363:intron | 45.0% | |
| TGAACTAGTTCGAACCCTAC+AGG | + | chr3.3:93615061-93615080 | None:intergenic | 45.0% | |
| TGAGAAGAGGACCCTGAAAA+CGG | - | chr3.3:93614229-93614248 | MS.gene69363:intron | 45.0% | |
| TGAGATGAGAAGAGGAGAGA+TGG | - | chr3.3:93614181-93614200 | MS.gene69363:intron | 45.0% | |
| TGCATCCAGTTTACACGGTT+AGG | - | chr3.3:93616020-93616039 | MS.gene69363:intron | 45.0% | |
| TGTAGGGTTCGAACTAGTTC+AGG | - | chr3.3:93615060-93615079 | MS.gene69363:intron | 45.0% | |
| TGTGCTTCAGCAACACTGTT+AGG | + | chr3.3:93613491-93613510 | None:intergenic | 45.0% | |
| TTATGCTCTACTCACCTTCG+AGG | - | chr3.3:93613208-93613227 | MS.gene69363:intron | 45.0% | |
| TTCAACGTCAGACCTACGTA+AGG | + | chr3.3:93615842-93615861 | None:intergenic | 45.0% | |
| TTCCAAAACCGTTTAGCACC+AGG | + | chr3.3:93613558-93613577 | None:intergenic | 45.0% | |
| TTGTCAATAGAGGCCACTAC+TGG | + | chr3.3:93614420-93614439 | None:intergenic | 45.0% | |
| TTTGGCAGTGTGCTTTGTGA+TGG | - | chr3.3:93615780-93615799 | MS.gene69363:intron | 45.0% | |
| ! | CTGGAAAGAGTACAGAAAGC+AGG | - | chr3.3:93614904-93614923 | MS.gene69363:intron | 45.0% |
| ! | GGACTTCAGGTTCTTCACTA+TGG | - | chr3.3:93615631-93615650 | MS.gene69363:intron | 45.0% |
| ! | TTCTCACACCTGGTGCTAAA+CGG | - | chr3.3:93613547-93613566 | MS.gene69363:intron | 45.0% |
| ! | TTTGGGATTTGGATCCTCGA+AGG | + | chr3.3:93613225-93613244 | None:intergenic | 45.0% |
| !! | ACTTTAGTTCTGTGCCATGG+TGG | - | chr3.3:93615899-93615918 | MS.gene69363:intron | 45.0% |
| !! | AGCAGAGCATCACCCATTTT+TGG | + | chr3.3:93615967-93615986 | None:intergenic | 45.0% |
| !! | CGAACTTTAGTTCTGTGCCA+TGG | - | chr3.3:93615896-93615915 | MS.gene69363:intron | 45.0% |
| !! | TTCTCTGAAGGTATCAGAGC+GGG | + | chr3.3:93613524-93613543 | None:intergenic | 45.0% |
| !!! | GCGTCGCGTTTTACTGATTT+TGG | - | chr3.3:93614384-93614403 | MS.gene69363:intron | 45.0% |
| AAAGGAGGGAGCTGTCAAGT+TGG | + | chr3.3:93615815-93615834 | None:intergenic | 50.0% | |
| ACAAAGGGAAAGAGGCAAGC+AGG | + | chr3.3:93615195-93615214 | None:intergenic | 50.0% | |
| AGGTCTGACGTTGAAGAAGG+CGG | - | chr3.3:93615847-93615866 | MS.gene69363:intron | 50.0% | |
| AGTGTCGTCGATAGCAAGAC+TGG | - | chr3.3:93614885-93614904 | MS.gene69363:intron | 50.0% | |
| AGTTCGAACCCTACAGGAAG+GGG | + | chr3.3:93615055-93615074 | None:intergenic | 50.0% | |
| CAATCGGGGGGAAACTATCA+TGG | + | chr3.3:93613367-93613386 | None:intergenic | 50.0% | |
| CAATCTGGCCAAGCCTTTCT+TGG | - | chr3.3:93614854-93614873 | MS.gene69363:intron | 50.0% | |
| CCTACGTAAGGAGCAAAAGG+AGG | + | chr3.3:93615830-93615849 | None:intergenic | 50.0% | |
| CGCCTTAGCAGCAGGAAATA+CGG | + | chr3.3:93615878-93615897 | None:intergenic | 50.0% | |
| CGTAGGTCTGACGTTGAAGA+AGG | - | chr3.3:93615844-93615863 | MS.gene69363:intron | 50.0% | |
| CTAAAGTTCGCCTTAGCAGC+AGG | + | chr3.3:93615886-93615905 | None:intergenic | 50.0% | |
| CTAGTTCGAACCCTACAGGA+AGG | + | chr3.3:93615057-93615076 | None:intergenic | 50.0% | |
| GACCGTATTTCCTGCTGCTA+AGG | - | chr3.3:93615873-93615892 | MS.gene69363:intron | 50.0% | |
| GATGCATCTAGTGTGGCATC+TGG | + | chr3.3:93616006-93616025 | None:intergenic | 50.0% | |
| GCTACGAGACAAAGGGAAAG+AGG | + | chr3.3:93615203-93615222 | None:intergenic | 50.0% | |
| GTAAGCATAGGCTAGGCTCA+TGG | - | chr3.3:93614552-93614571 | MS.gene69363:intron | 50.0% | |
| GTATTCCGAGCGCAAGAAGA+AGG | + | chr3.3:93612549-93612568 | None:intergenic | 50.0% | |
| TTTCAGTCCGGCGGAAAAGA+AGG | - | chr3.3:93612713-93612732 | MS.gene69363:intron | 50.0% | |
| TTTCTCCAAATGCTCCGCCT+TGG | - | chr3.3:93614355-93614374 | MS.gene69363:intron | 50.0% | |
| TTTGGAGAAAGCGGCTGAAG+CGG | + | chr3.3:93614345-93614364 | None:intergenic | 50.0% | |
| ! | CACTGTTCCTTCTTTTCCGC+CGG | + | chr3.3:93612723-93612742 | None:intergenic | 50.0% |
| ! | CAGTGTTGCTGAAGCACAAC+AGG | - | chr3.3:93613493-93613512 | MS.gene69363:intron | 50.0% |
| ! | CCTCCTTTTGCTCCTTACGT+AGG | - | chr3.3:93615827-93615846 | MS.gene69363:intron | 50.0% |
| ! | TGGAATTGGTTTCAGTCCGG+CGG | - | chr3.3:93612704-93612723 | MS.gene69363:intron | 50.0% |
| !! | CACCTGGTGCTAAACGGTTT+TGG | - | chr3.3:93613553-93613572 | MS.gene69363:intron | 50.0% |
| !! | TGGGTGATGCTCTGCTGTTT+TGG | - | chr3.3:93615971-93615990 | MS.gene69363:intron | 50.0% |
| !!! | CTCTGCTGTTTTGGAGCATG+AGG | - | chr3.3:93615980-93615999 | MS.gene69363:intron | 50.0% |
| ACGCGTAGCAGGCGCTATTT+CGG | - | chr3.3:93613806-93613825 | MS.gene69363:intron | 55.0% | |
| AGAGAATGGGGAGGGACTTC+AGG | - | chr3.3:93615618-93615637 | MS.gene69363:intron | 55.0% | |
| CCCAAAAATTGACGTGGCGC+GGG | - | chr3.3:93613777-93613796 | MS.gene69363:intron | 55.0% | |
| CCCCAAAAATTGACGTGGCG+CGG | - | chr3.3:93613776-93613795 | MS.gene69363:intron | 55.0% | |
| CGGCGGAAAAGAAGGAACAG+TGG | - | chr3.3:93612721-93612740 | MS.gene69363:intron | 55.0% | |
| CGGGGGGAAACTATCATGGA+TGG | + | chr3.3:93613363-93613382 | None:intergenic | 55.0% | |
| GCATACGCATCCACGTTCAC+CGG | - | chr3.3:93612465-93612484 | MS.gene69363:CDS | 55.0% | |
| GGCCACCCCAAAAATTGACG+TGG | - | chr3.3:93613771-93613790 | MS.gene69363:intron | 55.0% | |
| GGCGGTTGCCCAGTAATTGT+AGG | - | chr3.3:93616297-93616316 | MS.gene69363:CDS | 55.0% | |
| GTCAAAGCGGAAATGCGGTG+TGG | - | chr3.3:93613745-93613764 | MS.gene69363:intron | 55.0% | |
| TTGGAGAAAGCGGCTGAAGC+GGG | + | chr3.3:93614344-93614363 | None:intergenic | 55.0% | |
| ! | CCCGCGCCACGTCAATTTTT+GGG | + | chr3.3:93613780-93613799 | None:intergenic | 55.0% |
| ! | CCGCGCCACGTCAATTTTTG+GGG | + | chr3.3:93613779-93613798 | None:intergenic | 55.0% |
| ! | GGCGGAGCATTTGGAGAAAG+CGG | + | chr3.3:93614354-93614373 | None:intergenic | 55.0% |
| ! | TCCCGCGCCACGTCAATTTT+TGG | + | chr3.3:93613781-93613800 | None:intergenic | 55.0% |
| !! | CGCCACGTCAATTTTTGGGG+TGG | + | chr3.3:93613776-93613795 | None:intergenic | 55.0% |
| AATTGACGTGGCGCGGGATG+CGG | - | chr3.3:93613783-93613802 | MS.gene69363:intron | 60.0% | |
| AGCGGAAATGCGGTGTGGCA+CGG | - | chr3.3:93613750-93613769 | MS.gene69363:intron | 60.0% | |
| GGGCGCGATGCAGGTAAAAG+CGG | + | chr3.3:93614324-93614343 | None:intergenic | 60.0% | |
| ! | CGTAGCAGGCGCTATTTCGG+TGG | - | chr3.3:93613809-93613828 | MS.gene69363:intron | 60.0% |
| AAACGCGACGCAGCGCTCCA+AGG | + | chr3.3:93614375-93614394 | None:intergenic | 65.0% | |
| AGGCCACTACTGGCGCAGAG+CGG | + | chr3.3:93614410-93614429 | None:intergenic | 65.0% | |
| ! | GCGCTCCAAGGCGGAGCATT+TGG | + | chr3.3:93614363-93614382 | None:intergenic | 65.0% |
| TGGCCGCTCTGCGCCAGTAG+TGG | - | chr3.3:93614404-93614423 | MS.gene69363:intron | 70.0% | |
| CGCGACGCAGCGCTCCAAGG+CGG | + | chr3.3:93614372-93614391 | None:intergenic | 75.0% | |
| GCGGGATGCGGACGCGTAGC+AGG | - | chr3.3:93613795-93613814 | MS.gene69363:intron | 75.0% | |
| GGCTGAAGCGGGCGCGATGC+AGG | + | chr3.3:93614333-93614352 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 93612451 | 93616371 | 93612451 | ID=MS.gene69363 |
| chr3.3 | mRNA | 93612451 | 93616371 | 93612451 | ID=MS.gene69363.t1;Parent=MS.gene69363 |
| chr3.3 | exon | 93616193 | 93616371 | 93616193 | ID=MS.gene69363.t1.exon1;Parent=MS.gene69363.t1 |
| chr3.3 | CDS | 93616193 | 93616371 | 93616193 | ID=cds.MS.gene69363.t1;Parent=MS.gene69363.t1 |
| chr3.3 | exon | 93616028 | 93616103 | 93616028 | ID=MS.gene69363.t1.exon2;Parent=MS.gene69363.t1 |
| chr3.3 | CDS | 93616028 | 93616103 | 93616028 | ID=cds.MS.gene69363.t1;Parent=MS.gene69363.t1 |
| chr3.3 | exon | 93613897 | 93613994 | 93613897 | ID=MS.gene69363.t1.exon3;Parent=MS.gene69363.t1 |
| chr3.3 | CDS | 93613897 | 93613994 | 93613897 | ID=cds.MS.gene69363.t1;Parent=MS.gene69363.t1 |
| chr3.3 | exon | 93613660 | 93613757 | 93613660 | ID=MS.gene69363.t1.exon4;Parent=MS.gene69363.t1 |
| chr3.3 | CDS | 93613660 | 93613757 | 93613660 | ID=cds.MS.gene69363.t1;Parent=MS.gene69363.t1 |
| chr3.3 | exon | 93613073 | 93613202 | 93613073 | ID=MS.gene69363.t1.exon5;Parent=MS.gene69363.t1 |
| chr3.3 | CDS | 93613073 | 93613202 | 93613073 | ID=cds.MS.gene69363.t1;Parent=MS.gene69363.t1 |
| chr3.3 | exon | 93612786 | 93612973 | 93612786 | ID=MS.gene69363.t1.exon6;Parent=MS.gene69363.t1 |
| chr3.3 | CDS | 93612786 | 93612973 | 93612786 | ID=cds.MS.gene69363.t1;Parent=MS.gene69363.t1 |
| chr3.3 | exon | 93612451 | 93612524 | 93612451 | ID=MS.gene69363.t1.exon7;Parent=MS.gene69363.t1 |
| chr3.3 | CDS | 93612451 | 93612524 | 93612451 | ID=cds.MS.gene69363.t1;Parent=MS.gene69363.t1 |
| Gene Sequence |
| Protein sequence |
