Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69594.t1 | XP_024634918.1 | 83 | 578 | 62 | 2 | 1 | 542 | 1303 | 1880 | 4.10E-254 | 887.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69594.t1 | A0A072UVP2 | 79.5 | 604 | 62 | 2 | 1 | 542 | 1276 | 1879 | 3.1e-251 | 877.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049531 | MS.gene69594 | 0.805391 | 1.37E-49 | -1.69E-46 |
| MS.gene049587 | MS.gene69594 | 0.816 | 6.93E-52 | -1.69E-46 |
| MS.gene049701 | MS.gene69594 | 0.804485 | 2.11E-49 | -1.69E-46 |
| MS.gene049853 | MS.gene69594 | 0.82581 | 3.83E-54 | -1.69E-46 |
| MS.gene050611 | MS.gene69594 | 0.806715 | 7.19E-50 | -1.69E-46 |
| MS.gene054484 | MS.gene69594 | 0.809019 | 2.33E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene69594 | 0.804304 | 2.30E-49 | -1.69E-46 |
| MS.gene058515 | MS.gene69594 | 0.851337 | 9.48E-61 | -1.69E-46 |
| MS.gene059276 | MS.gene69594 | 0.822657 | 2.11E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69594.t1 | MTR_3g451150 | 80.132 | 604 | 58 | 5 | 1 | 542 | 1276 | 1879 | 0.0 | 945 |
| MS.gene69594.t1 | MTR_3g452250 | 80.132 | 604 | 58 | 5 | 1 | 542 | 1276 | 1879 | 0.0 | 945 |
| MS.gene69594.t1 | MTR_3g435040 | 58.703 | 632 | 142 | 10 | 1 | 533 | 1003 | 1614 | 0.0 | 641 |
| MS.gene69594.t1 | MTR_3g435040 | 58.703 | 632 | 142 | 10 | 1 | 533 | 1220 | 1831 | 0.0 | 641 |
| MS.gene69594.t1 | MTR_3g435040 | 58.703 | 632 | 142 | 10 | 1 | 533 | 1005 | 1616 | 0.0 | 640 |
| MS.gene69594.t1 | MTR_3g435040 | 58.425 | 635 | 142 | 10 | 1 | 533 | 1220 | 1834 | 0.0 | 639 |
| MS.gene69594.t1 | MTR_3g466750 | 61.979 | 576 | 180 | 10 | 1 | 542 | 1298 | 1868 | 0.0 | 635 |
| MS.gene69594.t1 | MTR_3g435040 | 58.961 | 597 | 135 | 9 | 1 | 533 | 1005 | 1555 | 0.0 | 613 |
| MS.gene69594.t1 | MTR_3g062980 | 52.265 | 574 | 163 | 16 | 1 | 542 | 204 | 698 | 4.44e-162 | 478 |
| MS.gene69594.t1 | MTR_3g062980 | 49.612 | 129 | 51 | 3 | 1 | 123 | 92 | 212 | 9.51e-26 | 112 |
| MS.gene69594.t1 | MTR_3g062320 | 53.287 | 578 | 157 | 14 | 1 | 542 | 1106 | 1606 | 7.80e-160 | 495 |
| MS.gene69594.t1 | MTR_3g062180 | 50.087 | 575 | 163 | 15 | 1 | 512 | 115 | 628 | 1.14e-158 | 467 |
| MS.gene69594.t1 | MTR_3g062180 | 34.742 | 426 | 127 | 12 | 1 | 372 | 89 | 417 | 4.40e-48 | 177 |
| MS.gene69594.t1 | MTR_3g063010 | 52.062 | 582 | 163 | 16 | 1 | 542 | 1297 | 1802 | 1.23e-151 | 476 |
| MS.gene69594.t1 | MTR_3g062140 | 50.087 | 575 | 163 | 15 | 1 | 512 | 1233 | 1746 | 5.79e-148 | 466 |
| MS.gene69594.t1 | MTR_3g062140 | 34.742 | 426 | 127 | 12 | 1 | 372 | 1207 | 1535 | 2.13e-46 | 175 |
| MS.gene69594.t1 | MTR_3g464840 | 48.750 | 560 | 206 | 13 | 1 | 529 | 1206 | 1715 | 8.42e-140 | 444 |
| MS.gene69594.t1 | MTR_3g062340 | 64.211 | 380 | 89 | 6 | 188 | 542 | 1592 | 1949 | 2.40e-136 | 435 |
| MS.gene69594.t1 | MTR_3g062340 | 53.191 | 423 | 155 | 8 | 1 | 400 | 1206 | 1608 | 1.72e-113 | 371 |
| MS.gene69594.t1 | MTR_2g023000 | 48.704 | 540 | 111 | 14 | 1 | 505 | 1 | 409 | 5.01e-130 | 385 |
| MS.gene69594.t1 | MTR_3g062130 | 50.202 | 494 | 160 | 11 | 66 | 542 | 1 | 425 | 8.92e-129 | 383 |
| MS.gene69594.t1 | MTR_3g062400 | 66.438 | 292 | 54 | 3 | 295 | 542 | 1 | 292 | 9.88e-119 | 352 |
| MS.gene69594.t1 | MTR_3g435040 | 56.345 | 394 | 102 | 7 | 1 | 343 | 1003 | 1377 | 2.39e-117 | 378 |
| MS.gene69594.t1 | MTR_0922s0020 | 75.943 | 212 | 49 | 2 | 332 | 542 | 2 | 212 | 7.58e-102 | 306 |
| MS.gene69594.t1 | MTR_3g062420 | 70.656 | 259 | 47 | 5 | 289 | 540 | 1703 | 1939 | 1.32e-98 | 328 |
| MS.gene69594.t1 | MTR_3g062420 | 47.268 | 421 | 152 | 9 | 1 | 375 | 1304 | 1700 | 1.54e-88 | 299 |
| MS.gene69594.t1 | MTR_3g027360 | 63.281 | 256 | 65 | 3 | 245 | 499 | 51 | 278 | 4.36e-97 | 296 |
| MS.gene69594.t1 | MTR_3g435040 | 50.636 | 393 | 84 | 7 | 1 | 343 | 1003 | 1335 | 3.99e-96 | 319 |
| MS.gene69594.t1 | MTR_3g062090 | 54.441 | 349 | 91 | 10 | 1 | 299 | 1285 | 1615 | 1.92e-91 | 307 |
| MS.gene69594.t1 | MTR_3g062090 | 54.441 | 349 | 91 | 10 | 1 | 299 | 1285 | 1615 | 2.26e-91 | 307 |
| MS.gene69594.t1 | MTR_3g435040 | 64.822 | 253 | 78 | 4 | 1 | 243 | 1005 | 1256 | 9.60e-91 | 303 |
| MS.gene69594.t1 | MTR_3g464950 | 42.947 | 475 | 173 | 9 | 123 | 542 | 1357 | 1788 | 1.43e-90 | 305 |
| MS.gene69594.t1 | MTR_3g464950 | 40.317 | 315 | 124 | 10 | 4 | 308 | 1105 | 1365 | 1.93e-48 | 181 |
| MS.gene69594.t1 | MTR_3g464920 | 43.601 | 461 | 170 | 10 | 123 | 542 | 1330 | 1741 | 7.16e-87 | 294 |
| MS.gene69594.t1 | MTR_3g464920 | 60.484 | 124 | 37 | 2 | 4 | 119 | 1118 | 1237 | 4.33e-38 | 150 |
| MS.gene69594.t1 | MTR_3g464810 | 48.370 | 368 | 124 | 5 | 176 | 512 | 1520 | 1852 | 1.74e-86 | 293 |
| MS.gene69594.t1 | MTR_3g464810 | 40.449 | 356 | 143 | 8 | 1 | 343 | 1172 | 1471 | 1.51e-63 | 226 |
| MS.gene69594.t1 | MTR_3g464870 | 47.532 | 385 | 111 | 6 | 227 | 542 | 1515 | 1877 | 3.16e-86 | 292 |
| MS.gene69594.t1 | MTR_3g464870 | 40.864 | 301 | 153 | 8 | 1 | 289 | 1212 | 1499 | 1.59e-48 | 181 |
| MS.gene69594.t1 | MTR_3g062230 | 51.198 | 334 | 132 | 10 | 1 | 322 | 249 | 563 | 3.46e-86 | 281 |
| MS.gene69594.t1 | MTR_2g049960 | 56.275 | 247 | 81 | 5 | 323 | 542 | 77 | 323 | 4.79e-76 | 243 |
| MS.gene69594.t1 | MTR_0043s0080 | 41.320 | 409 | 173 | 14 | 1 | 396 | 11 | 365 | 8.24e-71 | 236 |
| MS.gene69594.t1 | MTR_0043s0080 | 40.191 | 418 | 175 | 14 | 1 | 396 | 11 | 375 | 4.49e-69 | 231 |
| MS.gene69594.t1 | MTR_3g466610 | 39.886 | 351 | 132 | 7 | 3 | 328 | 11 | 307 | 8.90e-58 | 204 |
| MS.gene69594.t1 | MTR_3g467660 | 69.930 | 143 | 41 | 2 | 1 | 142 | 164 | 305 | 9.37e-58 | 195 |
| MS.gene69594.t1 | MTR_1147s0010 | 66.242 | 157 | 44 | 2 | 374 | 530 | 13 | 160 | 6.66e-57 | 187 |
| MS.gene69594.t1 | MTR_3g436180 | 54.082 | 196 | 83 | 4 | 1 | 195 | 110 | 299 | 7.25e-57 | 193 |
| MS.gene69594.t1 | MTR_3g062010 | 46.786 | 280 | 65 | 5 | 278 | 542 | 1034 | 1244 | 1.03e-56 | 206 |
| MS.gene69594.t1 | MTR_0257s0040 | 69.565 | 138 | 33 | 2 | 1 | 137 | 46 | 175 | 7.99e-56 | 186 |
| MS.gene69594.t1 | MTR_3g062050 | 74.638 | 138 | 34 | 1 | 1 | 137 | 230 | 367 | 3.33e-55 | 191 |
| MS.gene69594.t1 | MTR_3g466590 | 51.942 | 206 | 81 | 5 | 1 | 189 | 9 | 213 | 1.27e-54 | 195 |
| MS.gene69594.t1 | MTR_2g451270 | 47.368 | 247 | 75 | 6 | 323 | 542 | 33 | 251 | 4.68e-54 | 183 |
| MS.gene69594.t1 | MTR_3g048593 | 42.069 | 290 | 102 | 6 | 1 | 288 | 81 | 306 | 4.42e-50 | 175 |
| MS.gene69594.t1 | MTR_3g466530 | 57.895 | 152 | 51 | 2 | 1 | 152 | 225 | 363 | 4.14e-49 | 181 |
| MS.gene69594.t1 | MTR_3g464870 | 40.864 | 301 | 153 | 8 | 1 | 289 | 1212 | 1499 | 1.59e-48 | 181 |
| MS.gene69594.t1 | MTR_7g026240 | 73.684 | 114 | 28 | 2 | 1 | 112 | 61 | 174 | 1.98e-47 | 168 |
| MS.gene69594.t1 | MTR_7g026240 | 56.643 | 143 | 40 | 3 | 415 | 542 | 197 | 332 | 4.02e-39 | 145 |
| MS.gene69594.t1 | MTR_3g048690 | 61.438 | 153 | 32 | 3 | 351 | 502 | 1144 | 1270 | 7.09e-45 | 171 |
| MS.gene69594.t1 | MTR_3g069220 | 64.167 | 120 | 40 | 2 | 363 | 481 | 20 | 137 | 3.53e-41 | 145 |
| MS.gene69594.t1 | MTR_3g031750 | 38.109 | 349 | 146 | 12 | 51 | 378 | 1426 | 1725 | 8.63e-41 | 158 |
| MS.gene69594.t1 | MTR_3g464820 | 54.225 | 142 | 55 | 4 | 1 | 139 | 46 | 180 | 1.37e-38 | 139 |
| MS.gene69594.t1 | MTR_3g062060 | 62.992 | 127 | 37 | 3 | 151 | 267 | 2 | 128 | 4.34e-36 | 137 |
| MS.gene69594.t1 | MTR_3g062390 | 46.196 | 184 | 83 | 6 | 66 | 238 | 1 | 179 | 3.04e-34 | 128 |
| MS.gene69594.t1 | MTR_2g450480 | 71.084 | 83 | 24 | 0 | 1 | 83 | 1 | 83 | 1.01e-29 | 123 |
| MS.gene69594.t1 | MTR_3g466550 | 54.348 | 92 | 28 | 1 | 465 | 542 | 21 | 112 | 3.15e-24 | 97.8 |
| MS.gene69594.t1 | MTR_2g450490 | 54.348 | 92 | 28 | 1 | 465 | 542 | 179 | 270 | 1.35e-22 | 98.2 |
| MS.gene69594.t1 | MTR_2g450490 | 34.673 | 199 | 69 | 5 | 190 | 359 | 1 | 167 | 8.01e-14 | 72.4 |
| MS.gene69594.t1 | MTR_3g063320 | 55.000 | 80 | 22 | 1 | 477 | 542 | 60 | 139 | 7.12e-17 | 77.8 |
| MS.gene69594.t1 | MTR_5g085400 | 29.831 | 295 | 164 | 11 | 1 | 287 | 1382 | 1641 | 2.51e-15 | 80.1 |
| MS.gene69594.t1 | MTR_1g031830 | 30.387 | 181 | 114 | 7 | 1 | 173 | 1242 | 1418 | 3.15e-14 | 76.6 |
| MS.gene69594.t1 | MTR_3g055210 | 38.346 | 133 | 69 | 8 | 1 | 124 | 1028 | 1156 | 8.47e-12 | 68.6 |
| MS.gene69594.t1 | MTR_1142s0010 | 53.731 | 67 | 26 | 1 | 305 | 366 | 7 | 73 | 1.33e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 68 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAAGCCAGAGAGAGTTTA+TGG | 0.175441 | 3.1:+34829505 | None:intergenic |
| CTCATAATCGAAATGCTTCT+TGG | 0.247271 | 3.1:+34827518 | None:intergenic |
| CTTCAGGATCATCATGTAAT+TGG | 0.253136 | 3.1:+34829145 | None:intergenic |
| GAGGAGAAGCTATGGCTATT+TGG | 0.270522 | 3.1:+34827984 | None:intergenic |
| GATGAGCTAGAGGAAATATT+TGG | 0.290485 | 3.1:-34829654 | MS.gene69594:CDS |
| AGATGCATTGCAAAATTTGT+TGG | 0.315553 | 3.1:-34827226 | MS.gene69594:CDS |
| ACAACAAGTGTTCTTAGCTT+TGG | 0.321233 | 3.1:+34829765 | None:intergenic |
| ACATGTTATTGAAGATGATT+TGG | 0.336607 | 3.1:-34829835 | MS.gene69594:CDS |
| TGCTACCGTCAAACCTTCTA+AGG | 0.342826 | 3.1:-34828724 | MS.gene69594:CDS |
| ATTATAGGAGTTGGCGAAAC+TGG | 0.343096 | 3.1:-34828772 | MS.gene69594:intron |
| CAACAAGTGTTCTTAGCTTT+GGG | 0.350325 | 3.1:+34829766 | None:intergenic |
| AGCTGCTGAATTTATTCTCT+TGG | 0.350401 | 3.1:+34828344 | None:intergenic |
| AATACAAGATGGTATTGATT+TGG | 0.357993 | 3.1:+34827718 | None:intergenic |
| GAACTCTTATCGTGGCCTTC+AGG | 0.363562 | 3.1:+34829129 | None:intergenic |
| ATACCTCCTGTAGGCTTTGA+AGG | 0.374312 | 3.1:+34827683 | None:intergenic |
| AATGCTACAACTTTCAGTTT+CGG | 0.399822 | 3.1:+34829603 | None:intergenic |
| TCAACATCTTGAGTGGCTAT+TGG | 0.400579 | 3.1:+34827962 | None:intergenic |
| TCCAACCATTTCTTATCAAA+AGG | 0.403546 | 3.1:+34827294 | None:intergenic |
| CAGCTTGAAATCGAATTCCT+TGG | 0.406921 | 3.1:+34829553 | None:intergenic |
| GATGGATCTTAAGCATCAAT+TGG | 0.413190 | 3.1:-34827175 | MS.gene69594:CDS |
| AGATCTTTACATGTGGAGAT+TGG | 0.429294 | 3.1:+34829711 | None:intergenic |
| AGCTTGAAATCGAATTCCTT+GGG | 0.429562 | 3.1:+34829554 | None:intergenic |
| TTTGCAGAACATCACTAAAC+AGG | 0.434233 | 3.1:-34827136 | MS.gene69594:CDS |
| AAAATAGTCTAATAGCCAAT+AGG | 0.436645 | 3.1:+34827075 | None:intergenic |
| TAAAGATCTTCATGAGCTAA+AGG | 0.441019 | 3.1:-34829697 | MS.gene69594:CDS |
| TAGCTCAGCTAGGCAATTGT+AGG | 0.442686 | 3.1:+34827407 | None:intergenic |
| AGGAAATATTTGGAAGTGAA+AGG | 0.443184 | 3.1:-34829644 | MS.gene69594:CDS |
| TTCTTCTTTGTTTGTCAAGA+GGG | 0.448491 | 3.1:-34827559 | MS.gene69594:CDS |
| GTGTCGTTTAAAAGAATTGA+AGG | 0.450005 | 3.1:+34827459 | None:intergenic |
| CATAGTGTGTTGGATGTGTT+AGG | 0.454033 | 3.1:-34827366 | MS.gene69594:CDS |
| GCTGCTTTAAGTGATCCTAT+TGG | 0.468711 | 3.1:-34827090 | MS.gene69594:CDS |
| TCTCTTGGCATTAGCTGATG+TGG | 0.476612 | 3.1:+34828359 | None:intergenic |
| GGAAATATTTGGAAGTGAAA+GGG | 0.478954 | 3.1:-34829643 | MS.gene69594:CDS |
| AAGATGTTGATGTTGAAATC+TGG | 0.479259 | 3.1:-34827949 | MS.gene69594:CDS |
| GAATTCCTTGGGCATGACAT+AGG | 0.481112 | 3.1:+34829565 | None:intergenic |
| GAATTGCCATAAACTCTCTC+TGG | 0.483614 | 3.1:-34829511 | MS.gene69594:CDS |
| AAACTGGTGCAACATGAACT+TGG | 0.490226 | 3.1:-34828756 | MS.gene69594:CDS |
| AAAGATCTTCATGAGCTAAA+GGG | 0.494424 | 3.1:-34829696 | MS.gene69594:CDS |
| CCAACACACTATGAGTTTGA+AGG | 0.495152 | 3.1:+34827376 | None:intergenic |
| CAGTATCCTTCAAAGCCTAC+AGG | 0.504227 | 3.1:-34827689 | MS.gene69594:CDS |
| CGTAAGACTAATGATGATCA+AGG | 0.510272 | 3.1:-34827917 | MS.gene69594:intron |
| GTTCTTCTTTGTTTGTCAAG+AGG | 0.515831 | 3.1:-34827560 | MS.gene69594:CDS |
| GGGCATGACATAGGCTTGGT+AGG | 0.516442 | 3.1:+34829574 | None:intergenic |
| ACACAAGTTGACTTCTTCAC+AGG | 0.516897 | 3.1:-34829076 | MS.gene69594:intron |
| TTCATTGAGTAACAGATACA+AGG | 0.528560 | 3.1:-34827436 | MS.gene69594:CDS |
| ACATCTTGAGTGGCTATTGG+AGG | 0.537697 | 3.1:+34827965 | None:intergenic |
| CATTCTGACACAACATGTGA+TGG | 0.542710 | 3.1:-34827193 | MS.gene69594:CDS |
| GAAAGTAAGCTCAAATATTG+AGG | 0.546291 | 3.1:-34827774 | MS.gene69594:CDS |
| CCTTGGGCATGACATAGGCT+TGG | 0.546808 | 3.1:+34829570 | None:intergenic |
| GGCTATTGGAGGAGAAGCTA+TGG | 0.558664 | 3.1:+34827976 | None:intergenic |
| CCTTCAAACTCATAGTGTGT+TGG | 0.566941 | 3.1:-34827376 | MS.gene69594:CDS |
| AAGAGAAGCAGATGAGCTAG+AGG | 0.571056 | 3.1:-34829664 | MS.gene69594:CDS |
| AACGAAATAAGTGTTGAAGA+AGG | 0.580735 | 3.1:-34828384 | MS.gene69594:CDS |
| AAAGCTAAGAACACTTGTTG+TGG | 0.587765 | 3.1:-34829763 | MS.gene69594:CDS |
| TTTGATAAGAAATGGTTGGA+TGG | 0.593596 | 3.1:-34827291 | MS.gene69594:CDS |
| GGAATTTCAATAGCTCAGCT+AGG | 0.596316 | 3.1:+34827397 | None:intergenic |
| GTTCTGCAAAACAGCTTCAG+AGG | 0.598079 | 3.1:+34827149 | None:intergenic |
| CTCATGAAGATCTTTACATG+TGG | 0.607158 | 3.1:+34829704 | None:intergenic |
| TTCAACATCAACATCTTGAG+TGG | 0.608521 | 3.1:+34827955 | None:intergenic |
| TACTGAGATGCAATACAAGA+TGG | 0.610401 | 3.1:+34827707 | None:intergenic |
| CAATTACATGATGATCCTGA+AGG | 0.623934 | 3.1:-34829144 | MS.gene69594:CDS |
| AGCAATAAAATACCTCCTGT+AGG | 0.641141 | 3.1:+34827674 | None:intergenic |
| GCAGAACATCACTAAACAGG+AGG | 0.642004 | 3.1:-34827133 | MS.gene69594:CDS |
| CCAAGCCTATGTCATGCCCA+AGG | 0.653055 | 3.1:-34829570 | MS.gene69594:CDS |
| GCTGATGGCATTTCTCGTCG+AGG | 0.654224 | 3.1:+34828924 | None:intergenic |
| TCATTGAGTAACAGATACAA+GGG | 0.655882 | 3.1:-34827435 | MS.gene69594:CDS |
| TGATTTCTGAACTCTTATCG+TGG | 0.680786 | 3.1:+34829121 | None:intergenic |
| TATCCTTCAAAGCCTACAGG+AGG | 0.681872 | 3.1:-34827686 | MS.gene69594:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAGCTTGTATTAAAT+AGG | + | chr3.1:34827607-34827626 | None:intergenic | 15.0% |
| !! | ATAATAATAAAATCAAAACG+TGG | + | chr3.1:34827659-34827678 | None:intergenic | 15.0% |
| !! | ATATACAATTAAGTAAAATG+AGG | + | chr3.1:34828469-34828488 | None:intergenic | 15.0% |
| !! | CTATTGAATATGTATATATT+TGG | + | chr3.1:34828093-34828112 | None:intergenic | 15.0% |
| !! | TATACAATTAAGTAAAATGA+GGG | + | chr3.1:34828468-34828487 | None:intergenic | 15.0% |
| !!! | ACTAATATTTCATCATTTTT+AGG | + | chr3.1:34829207-34829226 | None:intergenic | 15.0% |
| !!! | GCAATAGTTTTTAAAAATAT+TGG | + | chr3.1:34827532-34827551 | None:intergenic | 15.0% |
| !!! | TAAACTAATTTTGATACAAA+GGG | - | chr3.1:34828788-34828807 | MS.gene69594:intron | 15.0% |
| !!! | TATTTAAAATTTTAGGAAGA+TGG | - | chr3.1:34828934-34828953 | MS.gene69594:CDS | 15.0% |
| !!! | TTAAACTAATTTTGATACAA+AGG | - | chr3.1:34828787-34828806 | MS.gene69594:intron | 15.0% |
| !! | AATTCATATGCTCTTATTAT+AGG | - | chr3.1:34828160-34828179 | MS.gene69594:intron | 20.0% |
| !! | ATACAATTAAGTAAAATGAG+GGG | + | chr3.1:34828467-34828486 | None:intergenic | 20.0% |
| !! | TTCTATTATTTGATTGCATT+GGG | - | chr3.1:34828741-34828760 | MS.gene69594:CDS | 20.0% |
| !! | TTTCTATTATTTGATTGCAT+TGG | - | chr3.1:34828740-34828759 | MS.gene69594:CDS | 20.0% |
| !!! | ATTACATTATTTTCCTTAGA+AGG | + | chr3.1:34828239-34828258 | None:intergenic | 20.0% |
| !!! | TTTTAAAAACTATTGCATGT+TGG | - | chr3.1:34827536-34827555 | MS.gene69594:CDS | 20.0% |
| !!! | TTTTTTTCCATAAGTAAGTA+AGG | - | chr3.1:34828868-34828887 | MS.gene69594:intron | 20.0% |
| ! | ACAACCTCATTGTTTATATA+AGG | - | chr3.1:34828264-34828283 | MS.gene69594:intron | 25.0% |
| ! | ACATGTGTTTAATTATAAGC+AGG | - | chr3.1:34828538-34828557 | MS.gene69594:intron | 25.0% |
| ! | ACATGTTATTGAAGATGATT+TGG | - | chr3.1:34827112-34827131 | MS.gene69594:CDS | 25.0% |
| ! | ATTAGTTGCTCTTAAACAAA+AGG | - | chr3.1:34828436-34828455 | MS.gene69594:intron | 25.0% |
| ! | CATGTGTTTAATTATAAGCA+GGG | - | chr3.1:34828539-34828558 | MS.gene69594:intron | 25.0% |
| ! | CGTGATTTCTTAAATTAGTT+TGG | + | chr3.1:34828899-34828918 | None:intergenic | 25.0% |
| ! | GAATATGTATATATTTGGAG+AGG | + | chr3.1:34828088-34828107 | None:intergenic | 25.0% |
| ! | TTAAGAGCAACTAATTGTAT+AGG | + | chr3.1:34828431-34828450 | None:intergenic | 25.0% |
| ! | TTGATTCAAATACATTGCAT+TGG | + | chr3.1:34827929-34827948 | None:intergenic | 25.0% |
| !! | GATTTCCTTTTGATAAGAAA+TGG | - | chr3.1:34829648-34829667 | MS.gene69594:CDS | 25.0% |
| !! | TAATTTTCTTGTGCTCAAAT+AGG | - | chr3.1:34829310-34829329 | MS.gene69594:intron | 25.0% |
| !! | TTTTCACTCTTTGTCAATAA+AGG | - | chr3.1:34828491-34828510 | MS.gene69594:intron | 25.0% |
| !!! | AATACAAGATGGTATTGATT+TGG | + | chr3.1:34829232-34829251 | None:intergenic | 25.0% |
| !!! | CGATTATTTCATTTTGCTAT+AGG | - | chr3.1:34827743-34827762 | MS.gene69594:CDS | 25.0% |
| !!! | TGAAATCTTCTTTTTGAGAA+GGG | + | chr3.1:34829367-34829386 | None:intergenic | 25.0% |
| !!! | TTAGCCTTATATAAACAATG+AGG | + | chr3.1:34828271-34828290 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTGCAGAAAGAAA+TGG | - | chr3.1:34827959-34827978 | MS.gene69594:CDS | 25.0% |
| AAAGATCTTCATGAGCTAAA+GGG | - | chr3.1:34827251-34827270 | MS.gene69594:CDS | 30.0% | |
| AAGATGTTGATGTTGAAATC+TGG | - | chr3.1:34828998-34829017 | MS.gene69594:intron | 30.0% | |
| AATGCTACAACTTTCAGTTT+CGG | + | chr3.1:34827347-34827366 | None:intergenic | 30.0% | |
| AGATGCATTGCAAAATTTGT+TGG | - | chr3.1:34829721-34829740 | MS.gene69594:CDS | 30.0% | |
| AGGAAATATTTGGAAGTGAA+AGG | - | chr3.1:34827303-34827322 | MS.gene69594:CDS | 30.0% | |
| ATAATGTTCGTTACTAGCTA+AGG | + | chr3.1:34828122-34828141 | None:intergenic | 30.0% | |
| ATTCTTTCCAATACTTTCAG+AGG | - | chr3.1:34829340-34829359 | MS.gene69594:intron | 30.0% | |
| GAAAGTAAGCTCAAATATTG+AGG | - | chr3.1:34829173-34829192 | MS.gene69594:CDS | 30.0% | |
| GGAAATATTTGGAAGTGAAA+GGG | - | chr3.1:34827304-34827323 | MS.gene69594:CDS | 30.0% | |
| TAAAGATCTTCATGAGCTAA+AGG | - | chr3.1:34827250-34827269 | MS.gene69594:CDS | 30.0% | |
| TATGCTCTTATTATAGGAGT+TGG | - | chr3.1:34828166-34828185 | MS.gene69594:intron | 30.0% | |
| TCAAAATGAAAAGAGTGATG+AGG | + | chr3.1:34829094-34829113 | None:intergenic | 30.0% | |
| TCATCATCATTTAGAGAAAC+TGG | + | chr3.1:34829147-34829166 | None:intergenic | 30.0% | |
| TCATTGAGTAACAGATACAA+GGG | - | chr3.1:34829512-34829531 | MS.gene69594:CDS | 30.0% | |
| TCCAACCATTTCTTATCAAA+AGG | + | chr3.1:34829656-34829675 | None:intergenic | 30.0% | |
| TTCATTGAGTAACAGATACA+AGG | - | chr3.1:34829511-34829530 | MS.gene69594:CDS | 30.0% | |
| TTTGATAAGAAATGGTTGGA+TGG | - | chr3.1:34829656-34829675 | MS.gene69594:CDS | 30.0% | |
| ! | AGGTAAGACTAATTTTGGAT+CGG | - | chr3.1:34829050-34829069 | MS.gene69594:intron | 30.0% |
| ! | ATTTTCCTTAGAAGGTTTGA+CGG | + | chr3.1:34828231-34828250 | None:intergenic | 30.0% |
| ! | GATCAAGGTAAGACTAATTT+TGG | - | chr3.1:34829045-34829064 | MS.gene69594:intron | 30.0% |
| ! | TCCTTTTGATAAGAAATGGT+TGG | - | chr3.1:34829652-34829671 | MS.gene69594:CDS | 30.0% |
| ! | TGATACAAAGGGTACAAAAT+TGG | - | chr3.1:34828799-34828818 | MS.gene69594:intron | 30.0% |
| ! | TTCTTCTTTGTTTGTCAAGA+GGG | - | chr3.1:34829388-34829407 | MS.gene69594:intron | 30.0% |
| ! | TTTTGTATTATTGCTGCTGA+TGG | + | chr3.1:34828041-34828060 | None:intergenic | 30.0% |
| !! | AACCACGAATATCATTTTTG+AGG | + | chr3.1:34827481-34827500 | None:intergenic | 30.0% |
| !! | AACGAAATAAGTGTTGAAGA+AGG | - | chr3.1:34828563-34828582 | MS.gene69594:intron | 30.0% |
| !! | AGTCTACTGCTTTTAACATT+TGG | - | chr3.1:34828822-34828841 | MS.gene69594:intron | 30.0% |
| !! | CTGAAATCTTCTTTTTGAGA+AGG | + | chr3.1:34829368-34829387 | None:intergenic | 30.0% |
| !! | GTGTCGTTTAAAAGAATTGA+AGG | + | chr3.1:34829491-34829510 | None:intergenic | 30.0% |
| !!! | CATTTTGATGATGTGAAATC+AGG | - | chr3.1:34828358-34828377 | MS.gene69594:CDS | 30.0% |
| ACAACAAGTGTTCTTAGCTT+TGG | + | chr3.1:34827185-34827204 | None:intergenic | 35.0% | |
| ACAGGTGAGTTTGAGTAATT+AGG | - | chr3.1:34828688-34828707 | MS.gene69594:intron | 35.0% | |
| AGATCTTTACATGTGGAGAT+TGG | + | chr3.1:34827239-34827258 | None:intergenic | 35.0% | |
| AGCAATAAAATACCTCCTGT+AGG | + | chr3.1:34829276-34829295 | None:intergenic | 35.0% | |
| AGCTGCTGAATTTATTCTCT+TGG | + | chr3.1:34828606-34828625 | None:intergenic | 35.0% | |
| AGCTTGAAATCGAATTCCTT+GGG | + | chr3.1:34827396-34827415 | None:intergenic | 35.0% | |
| CAAAGGATGAGAAAGAATAG+AGG | + | chr3.1:34829123-34829142 | None:intergenic | 35.0% | |
| CAATTACATGATGATCCTGA+AGG | - | chr3.1:34827803-34827822 | MS.gene69594:intron | 35.0% | |
| CATTTAGAGAAACTGGACAA+AGG | + | chr3.1:34829140-34829159 | None:intergenic | 35.0% | |
| CGTAAGACTAATGATGATCA+AGG | - | chr3.1:34829030-34829049 | MS.gene69594:intron | 35.0% | |
| CTCATAATCGAAATGCTTCT+TGG | + | chr3.1:34829432-34829451 | None:intergenic | 35.0% | |
| CTCATGAAGATCTTTACATG+TGG | + | chr3.1:34827246-34827265 | None:intergenic | 35.0% | |
| CTTCAGGATCATCATGTAAT+TGG | + | chr3.1:34827805-34827824 | None:intergenic | 35.0% | |
| CTTCTTCTTCTTCTTCTAGA+AGG | - | chr3.1:34827701-34827720 | MS.gene69594:CDS | 35.0% | |
| GACCTCAAAAATGATATTCG+TGG | - | chr3.1:34827476-34827495 | MS.gene69594:CDS | 35.0% | |
| GATGAGCTAGAGGAAATATT+TGG | - | chr3.1:34827293-34827312 | MS.gene69594:CDS | 35.0% | |
| GATGGATCTTAAGCATCAAT+TGG | - | chr3.1:34829772-34829791 | MS.gene69594:CDS | 35.0% | |
| TAAGCAAAAAACGACTTCAC+AGG | - | chr3.1:34828670-34828689 | MS.gene69594:intron | 35.0% | |
| TACTGAGATGCAATACAAGA+TGG | + | chr3.1:34829243-34829262 | None:intergenic | 35.0% | |
| TCAAATACATTGCATTGGAG+AGG | + | chr3.1:34827924-34827943 | None:intergenic | 35.0% | |
| TGATTTCTGAACTCTTATCG+TGG | + | chr3.1:34827829-34827848 | None:intergenic | 35.0% | |
| TTCAACATCAACATCTTGAG+TGG | + | chr3.1:34828995-34829014 | None:intergenic | 35.0% | |
| TTTCAAAATGTAAGAGCTCG+TGG | - | chr3.1:34827576-34827595 | MS.gene69594:CDS | 35.0% | |
| TTTGCAGAACATCACTAAAC+AGG | - | chr3.1:34829811-34829830 | MS.gene69594:CDS | 35.0% | |
| ! | AAAGCTAAGAACACTTGTTG+TGG | - | chr3.1:34827184-34827203 | MS.gene69594:CDS | 35.0% |
| ! | ATTGGATAAAGTGTTTACCG+TGG | + | chr3.1:34827514-34827533 | None:intergenic | 35.0% |
| ! | CAACAAGTGTTCTTAGCTTT+GGG | + | chr3.1:34827184-34827203 | None:intergenic | 35.0% |
| ! | GTTCTTCTTTGTTTGTCAAG+AGG | - | chr3.1:34829387-34829406 | MS.gene69594:intron | 35.0% |
| !! | TTTGATGATGTGAAATCAGG+TGG | - | chr3.1:34828361-34828380 | MS.gene69594:CDS | 35.0% |
| !!! | CGTGGTTTTTTATCTTTCCA+CGG | - | chr3.1:34827494-34827513 | MS.gene69594:CDS | 35.0% |
| AAACTGGTGCAACATGAACT+TGG | - | chr3.1:34828191-34828210 | MS.gene69594:intron | 40.0% | |
| ATGATGTGAAATCAGGTGGA+GGG | - | chr3.1:34828365-34828384 | MS.gene69594:CDS | 40.0% | |
| ATTATAGGAGTTGGCGAAAC+TGG | - | chr3.1:34828175-34828194 | MS.gene69594:intron | 40.0% | |
| CAGCTTGAAATCGAATTCCT+TGG | + | chr3.1:34827397-34827416 | None:intergenic | 40.0% | |
| CATAGTGTGTTGGATGTGTT+AGG | - | chr3.1:34829581-34829600 | MS.gene69594:CDS | 40.0% | |
| CATTCTGACACAACATGTGA+TGG | - | chr3.1:34829754-34829773 | MS.gene69594:CDS | 40.0% | |
| CCAACACACTATGAGTTTGA+AGG | + | chr3.1:34829574-34829593 | None:intergenic | 40.0% | |
| CCTTCAAACTCATAGTGTGT+TGG | - | chr3.1:34829571-34829590 | MS.gene69594:CDS | 40.0% | |
| GAATTGCCATAAACTCTCTC+TGG | - | chr3.1:34827436-34827455 | MS.gene69594:CDS | 40.0% | |
| GGAAGAGCCTTACTTACTTA+TGG | + | chr3.1:34828878-34828897 | None:intergenic | 40.0% | |
| GGAATTTCAATAGCTCAGCT+AGG | + | chr3.1:34829553-34829572 | None:intergenic | 40.0% | |
| TCAACATCTTGAGTGGCTAT+TGG | + | chr3.1:34828988-34829007 | None:intergenic | 40.0% | |
| ! | ACACAAGTTGACTTCTTCAC+AGG | - | chr3.1:34827871-34827890 | MS.gene69594:intron | 40.0% |
| ! | GCTGCTTTAAGTGATCCTAT+TGG | - | chr3.1:34829857-34829876 | MS.gene69594:CDS | 40.0% |
| !! | ATTCGTTGTTTCTGAAGTGG+CGG | + | chr3.1:34828402-34828421 | None:intergenic | 40.0% |
| !! | CTCATTCGTTGTTTCTGAAG+TGG | + | chr3.1:34828405-34828424 | None:intergenic | 40.0% |
| AAGAGAAGCAGATGAGCTAG+AGG | - | chr3.1:34827283-34827302 | MS.gene69594:CDS | 45.0% | |
| ACATCTTGAGTGGCTATTGG+AGG | + | chr3.1:34828985-34829004 | None:intergenic | 45.0% | |
| CAGTATCCTTCAAAGCCTAC+AGG | - | chr3.1:34829258-34829277 | MS.gene69594:intron | 45.0% | |
| CTGAAGCCAGAGAGAGTTTA+TGG | + | chr3.1:34827445-34827464 | None:intergenic | 45.0% | |
| GAATTCCTTGGGCATGACAT+AGG | + | chr3.1:34827385-34827404 | None:intergenic | 45.0% | |
| GAGGAGAAGCTATGGCTATT+TGG | + | chr3.1:34828966-34828985 | None:intergenic | 45.0% | |
| GATGATGTGAAATCAGGTGG+AGG | - | chr3.1:34828364-34828383 | MS.gene69594:CDS | 45.0% | |
| GCAGAACATCACTAAACAGG+AGG | - | chr3.1:34829814-34829833 | MS.gene69594:CDS | 45.0% | |
| GTTCTGCAAAACAGCTTCAG+AGG | + | chr3.1:34829801-34829820 | None:intergenic | 45.0% | |
| TAGCTCAGCTAGGCAATTGT+AGG | + | chr3.1:34829543-34829562 | None:intergenic | 45.0% | |
| TATCCTTCAAAGCCTACAGG+AGG | - | chr3.1:34829261-34829280 | MS.gene69594:intron | 45.0% | |
| TCTCTTGGCATTAGCTGATG+TGG | + | chr3.1:34828591-34828610 | None:intergenic | 45.0% | |
| TGCTACCGTCAAACCTTCTA+AGG | - | chr3.1:34828223-34828242 | MS.gene69594:intron | 45.0% | |
| ! | ATACCTCCTGTAGGCTTTGA+AGG | + | chr3.1:34829267-34829286 | None:intergenic | 45.0% |
| ! | GAAGGGTCCTCTGAAAGTAT+TGG | + | chr3.1:34829350-34829369 | None:intergenic | 45.0% |
| !!! | ATTTGTTTATTTAAAATTTT+AGG | - | chr3.1:34828927-34828946 | MS.gene69594:CDS | 5.0% |
| GAACTCTTATCGTGGCCTTC+AGG | + | chr3.1:34827821-34827840 | None:intergenic | 50.0% | |
| GGCTATTGGAGGAGAAGCTA+TGG | + | chr3.1:34828974-34828993 | None:intergenic | 50.0% | |
| CCAAGCCTATGTCATGCCCA+AGG | - | chr3.1:34827377-34827396 | MS.gene69594:CDS | 55.0% | |
| CCTTGGGCATGACATAGGCT+TGG | + | chr3.1:34827380-34827399 | None:intergenic | 55.0% | |
| GCTGATGGCATTTCTCGTCG+AGG | + | chr3.1:34828026-34828045 | None:intergenic | 55.0% | |
| ! | GGGCATGACATAGGCTTGGT+AGG | + | chr3.1:34827376-34827395 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 34827083 | 34829886 | 34827083 | ID=MS.gene69594 |
| chr3.1 | mRNA | 34827083 | 34829886 | 34827083 | ID=MS.gene69594.t1;Parent=MS.gene69594 |
| chr3.1 | exon | 34829454 | 34829886 | 34829454 | ID=MS.gene69594.t1.exon1;Parent=MS.gene69594.t1 |
| chr3.1 | CDS | 34829454 | 34829886 | 34829454 | ID=cds.MS.gene69594.t1;Parent=MS.gene69594.t1 |
| chr3.1 | exon | 34829077 | 34829204 | 34829077 | ID=MS.gene69594.t1.exon2;Parent=MS.gene69594.t1 |
| chr3.1 | CDS | 34829077 | 34829204 | 34829077 | ID=cds.MS.gene69594.t1;Parent=MS.gene69594.t1 |
| chr3.1 | exon | 34828899 | 34828997 | 34828899 | ID=MS.gene69594.t1.exon3;Parent=MS.gene69594.t1 |
| chr3.1 | CDS | 34828899 | 34828997 | 34828899 | ID=cds.MS.gene69594.t1;Parent=MS.gene69594.t1 |
| chr3.1 | exon | 34828716 | 34828787 | 34828716 | ID=MS.gene69594.t1.exon4;Parent=MS.gene69594.t1 |
| chr3.1 | CDS | 34828716 | 34828787 | 34828716 | ID=cds.MS.gene69594.t1;Parent=MS.gene69594.t1 |
| chr3.1 | exon | 34828278 | 34828409 | 34828278 | ID=MS.gene69594.t1.exon5;Parent=MS.gene69594.t1 |
| chr3.1 | CDS | 34828278 | 34828409 | 34828278 | ID=cds.MS.gene69594.t1;Parent=MS.gene69594.t1 |
| chr3.1 | exon | 34827918 | 34828020 | 34827918 | ID=MS.gene69594.t1.exon6;Parent=MS.gene69594.t1 |
| chr3.1 | CDS | 34827918 | 34828020 | 34827918 | ID=cds.MS.gene69594.t1;Parent=MS.gene69594.t1 |
| chr3.1 | exon | 34827687 | 34827821 | 34827687 | ID=MS.gene69594.t1.exon7;Parent=MS.gene69594.t1 |
| chr3.1 | CDS | 34827687 | 34827821 | 34827687 | ID=cds.MS.gene69594.t1;Parent=MS.gene69594.t1 |
| chr3.1 | exon | 34827083 | 34827609 | 34827083 | ID=MS.gene69594.t1.exon8;Parent=MS.gene69594.t1 |
| chr3.1 | CDS | 34827083 | 34827609 | 34827083 | ID=cds.MS.gene69594.t1;Parent=MS.gene69594.t1 |
| Gene Sequence |
| Protein sequence |
