Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69750.t1 | XP_013461119.1 | 94.3 | 332 | 18 | 1 | 1 | 332 | 1 | 331 | 1.00E-159 | 572.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69750.t1 | P37707 | 86.6 | 149 | 20 | 0 | 171 | 319 | 56 | 204 | 1.6e-76 | 287.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69750.t1 | I3T6F6 | 94.3 | 332 | 18 | 1 | 1 | 332 | 1 | 331 | 7.6e-160 | 572.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049413 | MS.gene69750 | 0.819424 | 1.17E-52 | -1.69E-46 |
| MS.gene050669 | MS.gene69750 | 0.804591 | 2.01E-49 | -1.69E-46 |
| MS.gene051821 | MS.gene69750 | 0.840376 | 9.02E-58 | -1.69E-46 |
| MS.gene051823 | MS.gene69750 | 0.823253 | 1.53E-53 | -1.69E-46 |
| MS.gene051959 | MS.gene69750 | 0.800704 | 1.27E-48 | -1.69E-46 |
| MS.gene052040 | MS.gene69750 | 0.801345 | 9.41E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene69750 | 0.863928 | 1.75E-64 | -1.69E-46 |
| MS.gene054893 | MS.gene69750 | 0.859243 | 4.73E-63 | -1.69E-46 |
| MS.gene05624 | MS.gene69750 | 0.819594 | 1.07E-52 | -1.69E-46 |
| MS.gene058095 | MS.gene69750 | 0.826492 | 2.63E-54 | -1.69E-46 |
| MS.gene060413 | MS.gene69750 | 0.802807 | 4.71E-49 | -1.69E-46 |
| MS.gene060964 | MS.gene69750 | 0.802497 | 5.46E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69750.t1 | MTR_3g081090 | 97.892 | 332 | 6 | 1 | 1 | 332 | 1 | 331 | 0.0 | 660 |
| MS.gene69750.t1 | MTR_3g081090 | 97.419 | 310 | 7 | 1 | 1 | 310 | 1 | 309 | 0.0 | 615 |
| MS.gene69750.t1 | MTR_3g081090 | 97.436 | 273 | 6 | 1 | 1 | 273 | 1 | 272 | 0.0 | 536 |
| MS.gene69750.t1 | MTR_3g081090 | 96.341 | 246 | 8 | 1 | 1 | 246 | 1 | 245 | 5.01e-170 | 474 |
| MS.gene69750.t1 | MTR_3g081090 | 96.341 | 246 | 8 | 1 | 1 | 246 | 1 | 245 | 6.35e-170 | 475 |
| MS.gene69750.t1 | MTR_3g081090 | 95.794 | 214 | 8 | 1 | 1 | 214 | 1 | 213 | 4.40e-143 | 403 |
| MS.gene69750.t1 | MTR_8g099685 | 61.919 | 344 | 97 | 6 | 1 | 332 | 1 | 322 | 4.82e-139 | 397 |
| MS.gene69750.t1 | MTR_8g099685 | 61.300 | 323 | 91 | 6 | 1 | 311 | 1 | 301 | 7.70e-128 | 368 |
| MS.gene69750.t1 | MTR_7g029130 | 48.447 | 322 | 138 | 6 | 6 | 322 | 2 | 300 | 2.12e-94 | 283 |
| MS.gene69750.t1 | MTR_1g018690 | 46.970 | 132 | 68 | 1 | 185 | 314 | 33 | 164 | 2.86e-33 | 125 |
| MS.gene69750.t1 | MTR_4g013760 | 40.645 | 155 | 81 | 2 | 175 | 318 | 14 | 168 | 1.16e-30 | 117 |
| MS.gene69750.t1 | MTR_7g070350 | 40.278 | 144 | 80 | 3 | 179 | 317 | 14 | 156 | 2.01e-24 | 102 |
| MS.gene69750.t1 | MTR_7g070320 | 48.305 | 118 | 57 | 2 | 179 | 293 | 20 | 136 | 8.78e-24 | 102 |
| MS.gene69750.t1 | MTR_3g012490 | 32.787 | 183 | 107 | 5 | 139 | 317 | 192 | 362 | 6.92e-19 | 87.8 |
| MS.gene69750.t1 | MTR_4g084080 | 37.984 | 129 | 74 | 2 | 191 | 317 | 19 | 143 | 1.08e-18 | 87.8 |
| MS.gene69750.t1 | MTR_2g066940 | 35.659 | 129 | 77 | 2 | 191 | 317 | 123 | 247 | 2.40e-18 | 86.3 |
| MS.gene69750.t1 | MTR_2g067150 | 35.659 | 129 | 77 | 2 | 191 | 317 | 161 | 285 | 3.07e-18 | 85.9 |
| MS.gene69750.t1 | MTR_3g098590 | 36.567 | 134 | 70 | 3 | 189 | 317 | 18 | 141 | 1.01e-16 | 81.3 |
| MS.gene69750.t1 | MTR_3g012500 | 34.074 | 135 | 80 | 3 | 185 | 317 | 306 | 433 | 1.17e-15 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69750.t1 | AT5G42050 | 56.704 | 358 | 108 | 9 | 1 | 321 | 1 | 348 | 4.62e-119 | 347 |
| MS.gene69750.t1 | AT3G27090 | 50.000 | 318 | 131 | 6 | 9 | 322 | 2 | 295 | 7.84e-97 | 289 |
| MS.gene69750.t1 | AT3G27090 | 50.000 | 318 | 131 | 6 | 9 | 322 | 2 | 295 | 7.84e-97 | 289 |
| MS.gene69750.t1 | AT3G27090 | 50.000 | 318 | 131 | 6 | 9 | 322 | 2 | 295 | 7.84e-97 | 289 |
| MS.gene69750.t1 | AT5G01660 | 43.802 | 121 | 61 | 3 | 189 | 305 | 18 | 135 | 2.60e-24 | 103 |
| MS.gene69750.t1 | AT5G01660 | 43.802 | 121 | 61 | 3 | 189 | 305 | 18 | 135 | 4.85e-24 | 103 |
| MS.gene69750.t1 | AT5G01660 | 43.802 | 121 | 61 | 3 | 189 | 305 | 18 | 135 | 4.85e-24 | 103 |
| MS.gene69750.t1 | AT3G11000 | 42.748 | 131 | 72 | 2 | 189 | 317 | 11 | 140 | 2.97e-23 | 100 |
| MS.gene69750.t1 | AT3G11000 | 42.748 | 131 | 72 | 2 | 189 | 317 | 130 | 259 | 6.34e-23 | 99.8 |
| MS.gene69750.t1 | AT5G61910 | 38.235 | 136 | 76 | 2 | 183 | 317 | 55 | 183 | 2.63e-22 | 98.2 |
| MS.gene69750.t1 | AT5G61910 | 38.235 | 136 | 76 | 2 | 183 | 317 | 55 | 183 | 2.63e-22 | 98.2 |
| MS.gene69750.t1 | AT5G61910 | 38.235 | 136 | 76 | 2 | 183 | 317 | 59 | 187 | 2.66e-22 | 98.2 |
| MS.gene69750.t1 | AT5G61910 | 38.235 | 136 | 76 | 2 | 183 | 317 | 55 | 183 | 2.90e-22 | 98.2 |
| MS.gene69750.t1 | AT5G61910 | 38.235 | 136 | 76 | 2 | 183 | 317 | 55 | 183 | 1.20e-21 | 96.7 |
| MS.gene69750.t1 | AT2G35140 | 36.154 | 130 | 77 | 2 | 191 | 318 | 49 | 174 | 2.54e-18 | 86.7 |
| MS.gene69750.t1 | AT2G35140 | 36.154 | 130 | 77 | 2 | 191 | 318 | 23 | 148 | 2.63e-18 | 86.3 |
| MS.gene69750.t1 | AT2G35140 | 36.154 | 130 | 77 | 2 | 191 | 318 | 23 | 148 | 2.63e-18 | 86.3 |
| MS.gene69750.t1 | AT2G35140 | 36.154 | 130 | 77 | 2 | 191 | 318 | 23 | 148 | 2.63e-18 | 86.3 |
| MS.gene69750.t1 | AT2G35140 | 36.154 | 130 | 77 | 2 | 191 | 318 | 23 | 148 | 2.63e-18 | 86.3 |
| MS.gene69750.t1 | AT2G35140 | 36.154 | 130 | 77 | 2 | 191 | 318 | 23 | 148 | 2.63e-18 | 86.3 |
| MS.gene69750.t1 | AT2G32910 | 37.500 | 136 | 76 | 4 | 184 | 317 | 314 | 442 | 3.93e-17 | 82.8 |
Find 61 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAGCAACATCAATCTTAA+TGG | 0.219371 | 3.4:+77127978 | MS.gene69750:CDS |
| TATCTCTAAATGATTCAATT+TGG | 0.226496 | 3.4:+77127703 | MS.gene69750:CDS |
| TGGAATAGTTGTACAGAAAA+AGG | 0.243386 | 3.4:-77128968 | None:intergenic |
| CTTTCAGGCACTGTCTCTTT+TGG | 0.247103 | 3.4:+77129671 | MS.gene69750:intron |
| AAGGCATCAAACATCAAATT+TGG | 0.264941 | 3.4:+77127674 | MS.gene69750:CDS |
| TCTTCTTTGATCAGGTCTTT+TGG | 0.289740 | 3.4:-77127739 | None:intergenic |
| TTTGTTTAGGCTGCAAGTTT+TGG | 0.316231 | 3.4:+77129107 | MS.gene69750:intron |
| TTTCTTATCAGCAGAAGTTT+TGG | 0.316882 | 3.4:-77128117 | None:intergenic |
| TCAAAGTTTCTTCTTTGATC+AGG | 0.368380 | 3.4:-77127747 | None:intergenic |
| AATCTTAATGGTTACAAGTC+AGG | 0.377938 | 3.4:+77127990 | MS.gene69750:CDS |
| CTAAAAGAATCCTCCTCTAA+TGG | 0.382763 | 3.4:-77129496 | None:intergenic |
| TTAAGGTTGTTGTTAACATA+AGG | 0.384899 | 3.4:-77127939 | None:intergenic |
| CCACCAATGGTTTCATTCCT+AGG | 0.385390 | 3.4:-77128170 | None:intergenic |
| AAAAGTTTGTGAGCCATTAG+AGG | 0.390502 | 3.4:+77129483 | MS.gene69750:CDS |
| TTCTTATCCTCCCAAGCTGT+TGG | 0.395044 | 3.4:-77129146 | None:intergenic |
| CGTTGTTGATGTTATTGTTA+AGG | 0.397102 | 3.4:-77127956 | None:intergenic |
| AACCTCAAAAGACAGATCTT+TGG | 0.419250 | 3.4:+77128230 | MS.gene69750:CDS |
| CTAACTGAATCTCTGTATCT+TGG | 0.423011 | 3.4:-77128924 | None:intergenic |
| GGCAATTTAGTGATCAACTA+AGG | 0.427205 | 3.4:+77127655 | MS.gene69750:CDS |
| TTCTTCTTGACACCTTTGTT+AGG | 0.432675 | 3.4:-77128041 | None:intergenic |
| CTTGTTGAATCCTGCGAAAG+AGG | 0.435873 | 3.4:-77127901 | None:intergenic |
| AGCAGGGAAGCGAGATTCGC+CGG | 0.441493 | 3.4:-77129174 | None:intergenic |
| CCGTCATAGTGATGAAGAAT+TGG | 0.443037 | 3.4:-77129520 | None:intergenic |
| ATTGTTGTTGTTGATGTCCA+TGG | 0.448531 | 3.4:-77127619 | None:intergenic |
| CGAATCTCGCTTCCCTGCTC+AGG | 0.463286 | 3.4:+77129178 | MS.gene69750:CDS |
| ATTGGAGATTATACCTGAGC+AGG | 0.464399 | 3.4:-77129191 | None:intergenic |
| CCATCATTGAGATCACTACT+TGG | 0.466102 | 3.4:-77127819 | None:intergenic |
| GCAGGGAAGCGAGATTCGCC+GGG | 0.476900 | 3.4:-77129173 | None:intergenic |
| CCAAGTAGTGATCTCAATGA+TGG | 0.491309 | 3.4:+77127819 | MS.gene69750:CDS |
| TAATATTGATCCAACAGCTT+GGG | 0.497489 | 3.4:+77129136 | MS.gene69750:CDS |
| TCAGTTAGAACAATAACTCC+AGG | 0.508870 | 3.4:+77128939 | MS.gene69750:CDS |
| AATGGTTTCATTCCTAGGTA+AGG | 0.519328 | 3.4:-77128165 | None:intergenic |
| AATAACAACTCCTCTTTCGC+AGG | 0.527008 | 3.4:+77127891 | MS.gene69750:CDS |
| ACTGAATCTCTGTATCTTGG+AGG | 0.533877 | 3.4:-77128921 | None:intergenic |
| CTCTTTCGCAGGATTCAACA+AGG | 0.534328 | 3.4:+77127902 | MS.gene69750:CDS |
| AACAACATCAATAAGAAGCA+TGG | 0.540510 | 3.4:+77128077 | MS.gene69750:CDS |
| CCTAGGAATGAAACCATTGG+TGG | 0.555977 | 3.4:+77128170 | MS.gene69750:CDS |
| GGAGTTGTTATTGTGTGGCA+TGG | 0.563736 | 3.4:-77127880 | None:intergenic |
| GTAATATTGATCCAACAGCT+TGG | 0.571947 | 3.4:+77129135 | MS.gene69750:CDS |
| TGGGAGGATAAGAAGTGCCC+CGG | 0.572665 | 3.4:+77129155 | MS.gene69750:CDS |
| AACAAAGATATAACCACCAA+TGG | 0.574776 | 3.4:-77128183 | None:intergenic |
| TATTGATCCAACAGCTTGGG+AGG | 0.576562 | 3.4:+77129139 | MS.gene69750:CDS |
| TCTTGAACTGAGCGTGTCTG+AGG | 0.582165 | 3.4:+77129555 | MS.gene69750:CDS |
| GTAGTGATCTCAATGATGGA+TGG | 0.592204 | 3.4:+77127823 | MS.gene69750:CDS |
| CTCAGTTCAAGACGAAACTT+AGG | 0.597026 | 3.4:-77129544 | None:intergenic |
| TTACCTAGGAATGAAACCAT+TGG | 0.599552 | 3.4:+77128167 | MS.gene69750:CDS |
| TATTCCACCCACCAACTCCA+TGG | 0.602030 | 3.4:+77128984 | MS.gene69750:CDS |
| AAGATGATGAACAATTCCAA+TGG | 0.607810 | 3.4:+77127846 | MS.gene69750:CDS |
| TTGGAGATTATACCTGAGCA+GGG | 0.610256 | 3.4:-77129190 | None:intergenic |
| AGTTTGTGAGCCATTAGAGG+AGG | 0.612727 | 3.4:+77129486 | MS.gene69750:CDS |
| AATACCATGGAGTTGGTGGG+TGG | 0.622382 | 3.4:-77128988 | None:intergenic |
| CCAATTCTTCATCACTATGA+CGG | 0.629737 | 3.4:+77129520 | MS.gene69750:CDS |
| CTAGGTAAGGACTCAGATGG+TGG | 0.634849 | 3.4:-77128152 | None:intergenic |
| CAGTTAGAACAATAACTCCA+GGG | 0.635445 | 3.4:+77128940 | MS.gene69750:CDS |
| TTCCTAGGTAAGGACTCAGA+TGG | 0.649844 | 3.4:-77128155 | None:intergenic |
| TGTTTGCAACAATGATACCA+TGG | 0.654413 | 3.4:+77128202 | MS.gene69750:CDS |
| TCTTTCGCAGGATTCAACAA+GGG | 0.665174 | 3.4:+77127903 | MS.gene69750:CDS |
| AAAGAGGAGTTGTTATTGTG+TGG | 0.684764 | 3.4:-77127885 | None:intergenic |
| GAGTTTCAACTACCTAACAA+AGG | 0.701587 | 3.4:+77128029 | MS.gene69750:CDS |
| CACCATCTGAGTCCTTACCT+AGG | 0.710365 | 3.4:+77128153 | MS.gene69750:CDS |
| CAGGGAAGCGAGATTCGCCG+GGG | 0.726611 | 3.4:-77129172 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATAATATTAATATTTGA+TGG | + | chr3.4:77129082-77129101 | MS.gene69750:intron | 10.0% |
| !! | ATATCTTCTATTATCATATT+TGG | + | chr3.4:77129044-77129063 | MS.gene69750:intron | 15.0% |
| !! | CAAATTCATTATGATGAATT+CGG | - | chr3.4:77128611-77128630 | None:intergenic | 20.0% |
| !! | TAATTTGGTCTCTTAATTAT+TGG | + | chr3.4:77128872-77128891 | MS.gene69750:intron | 20.0% |
| !! | TATCAGATCAAGATTTAAAT+TGG | + | chr3.4:77128398-77128417 | MS.gene69750:intron | 20.0% |
| !! | TATCTCTAAATGATTCAATT+TGG | + | chr3.4:77127703-77127722 | MS.gene69750:CDS | 20.0% |
| !!! | ACAACAATGAAAATTCTTTT+TGG | + | chr3.4:77127634-77127653 | MS.gene69750:CDS | 20.0% |
| !!! | GTATTTATGTTGATTATTAG+AGG | + | chr3.4:77128797-77128816 | MS.gene69750:intron | 20.0% |
| !!! | TGATTTCAGTTAACTTTTTT+TGG | - | chr3.4:77128764-77128783 | None:intergenic | 20.0% |
| ! | AAATAAGTCGATCAAATAGA+AGG | - | chr3.4:77129228-77129247 | None:intergenic | 25.0% |
| ! | AATTAAGAGACCAAATTACA+CGG | - | chr3.4:77128870-77128889 | None:intergenic | 25.0% |
| ! | ACGGTTAAATTTCATATGAA+GGG | - | chr3.4:77128851-77128870 | None:intergenic | 25.0% |
| ! | GCTTATATGATAAACACTTA+CGG | + | chr3.4:77129381-77129400 | MS.gene69750:intron | 25.0% |
| ! | TCAAATAGAAGGACAATAAT+TGG | - | chr3.4:77129217-77129236 | None:intergenic | 25.0% |
| ! | TGAAATTTAACCGTGTAATT+TGG | + | chr3.4:77128857-77128876 | MS.gene69750:intron | 25.0% |
| !! | ACTTATTTGAGTTTATCTTC+TGG | + | chr3.4:77129240-77129259 | MS.gene69750:intron | 25.0% |
| !! | ATATTTGGAATCAATCTTCA+AGG | + | chr3.4:77129059-77129078 | MS.gene69750:intron | 25.0% |
| !! | TATTTGGAATCAATCTTCAA+GGG | + | chr3.4:77129060-77129079 | MS.gene69750:intron | 25.0% |
| !! | TGATATTTTCAAAGCTATAC+CGG | + | chr3.4:77129722-77129741 | MS.gene69750:CDS | 25.0% |
| !! | TGTGTCTTAATTTTTCTTTC+AGG | + | chr3.4:77129656-77129675 | MS.gene69750:intron | 25.0% |
| !! | TTAAGGTTGTTGTTAACATA+AGG | - | chr3.4:77127942-77127961 | None:intergenic | 25.0% |
| !! | TTGTCTAAAGCTAATGAATT+TGG | + | chr3.4:77129426-77129445 | MS.gene69750:intron | 25.0% |
| !!! | ATATTTGATGGTGTTTGTTT+AGG | + | chr3.4:77129094-77129113 | MS.gene69750:intron | 25.0% |
| !!! | TTTTGAGTTGAAATTAGTGA+AGG | - | chr3.4:77127799-77127818 | None:intergenic | 25.0% |
| AACAAAGATATAACCACCAA+TGG | - | chr3.4:77128186-77128205 | None:intergenic | 30.0% | |
| AACAACATCAATAAGAAGCA+TGG | + | chr3.4:77128077-77128096 | MS.gene69750:CDS | 30.0% | |
| AAGATGATGAACAATTCCAA+TGG | + | chr3.4:77127846-77127865 | MS.gene69750:CDS | 30.0% | |
| AATAGACACACACTAAAGAT+CGG | + | chr3.4:77128654-77128673 | MS.gene69750:intron | 30.0% | |
| AATCTTAATGGTTACAAGTC+AGG | + | chr3.4:77127990-77128009 | MS.gene69750:CDS | 30.0% | |
| CACGGTTAAATTTCATATGA+AGG | - | chr3.4:77128852-77128871 | None:intergenic | 30.0% | |
| CGTTGTTGATGTTATTGTTA+AGG | - | chr3.4:77127959-77127978 | None:intergenic | 30.0% | |
| CTGAAATCATCAATAGTCTT+TGG | + | chr3.4:77128775-77128794 | MS.gene69750:intron | 30.0% | |
| GAATAGTTGTACAGAAAAAG+GGG | - | chr3.4:77128969-77128988 | None:intergenic | 30.0% | |
| GGAATAGTTGTACAGAAAAA+GGG | - | chr3.4:77128970-77128989 | None:intergenic | 30.0% | |
| GTTAGCAACATCAATCTTAA+TGG | + | chr3.4:77127978-77127997 | MS.gene69750:CDS | 30.0% | |
| TAATATTGATCCAACAGCTT+GGG | + | chr3.4:77129136-77129155 | MS.gene69750:CDS | 30.0% | |
| TACATACCTCAAAAATACCA+TGG | - | chr3.4:77129004-77129023 | None:intergenic | 30.0% | |
| TAGAAGGACAATAATTGGAT+TGG | - | chr3.4:77129212-77129231 | None:intergenic | 30.0% | |
| TCAAAGTTTCTTCTTTGATC+AGG | - | chr3.4:77127750-77127769 | None:intergenic | 30.0% | |
| TGGAATAGTTGTACAGAAAA+AGG | - | chr3.4:77128971-77128990 | None:intergenic | 30.0% | |
| ! | AAGGCATCAAACATCAAATT+TGG | + | chr3.4:77127674-77127693 | MS.gene69750:CDS | 30.0% |
| ! | GAAGTAAGTTGAACAACTAA+TGG | - | chr3.4:77129322-77129341 | None:intergenic | 30.0% |
| ! | GTTTACCTGGTAAATTTTGT+AGG | + | chr3.4:77128894-77128913 | MS.gene69750:intron | 30.0% |
| ! | TTTCTTATCAGCAGAAGTTT+TGG | - | chr3.4:77128120-77128139 | None:intergenic | 30.0% |
| !! | CTCTTAATTATTGGTTTACC+TGG | + | chr3.4:77128881-77128900 | MS.gene69750:intron | 30.0% |
| AAAAGTTTGTGAGCCATTAG+AGG | + | chr3.4:77129483-77129502 | MS.gene69750:CDS | 35.0% | |
| AAACTATCCTGAAGAGCTTA+TGG | - | chr3.4:77129344-77129363 | None:intergenic | 35.0% | |
| AACCTCAAAAGACAGATCTT+TGG | + | chr3.4:77128230-77128249 | MS.gene69750:CDS | 35.0% | |
| AATGGTTTCATTCCTAGGTA+AGG | - | chr3.4:77128168-77128187 | None:intergenic | 35.0% | |
| CAGTTAGAACAATAACTCCA+GGG | + | chr3.4:77128940-77128959 | MS.gene69750:CDS | 35.0% | |
| CCAATTCTTCATCACTATGA+CGG | + | chr3.4:77129520-77129539 | MS.gene69750:CDS | 35.0% | |
| CTAAAAGAATCCTCCTCTAA+TGG | - | chr3.4:77129499-77129518 | None:intergenic | 35.0% | |
| CTAACTGAATCTCTGTATCT+TGG | - | chr3.4:77128927-77128946 | None:intergenic | 35.0% | |
| GAGTTTCAACTACCTAACAA+AGG | + | chr3.4:77128029-77128048 | MS.gene69750:CDS | 35.0% | |
| GGCAATTTAGTGATCAACTA+AGG | + | chr3.4:77127655-77127674 | MS.gene69750:CDS | 35.0% | |
| GTAATATTGATCCAACAGCT+TGG | + | chr3.4:77129135-77129154 | MS.gene69750:CDS | 35.0% | |
| TCAGTTAGAACAATAACTCC+AGG | + | chr3.4:77128939-77128958 | MS.gene69750:CDS | 35.0% | |
| TCATAAGATACATGTGACCA+TGG | + | chr3.4:77128726-77128745 | MS.gene69750:intron | 35.0% | |
| TGTTTGCAACAATGATACCA+TGG | + | chr3.4:77128202-77128221 | MS.gene69750:CDS | 35.0% | |
| TTACCTAGGAATGAAACCAT+TGG | + | chr3.4:77128167-77128186 | MS.gene69750:CDS | 35.0% | |
| TTCTTCTTGACACCTTTGTT+AGG | - | chr3.4:77128044-77128063 | None:intergenic | 35.0% | |
| ! | AAAAATACCATGGAGTTGGT+GGG | - | chr3.4:77128994-77129013 | None:intergenic | 35.0% |
| ! | AAAGAGGAGTTGTTATTGTG+TGG | - | chr3.4:77127888-77127907 | None:intergenic | 35.0% |
| ! | TACCAAAGATCTGTCTTTTG+AGG | - | chr3.4:77128235-77128254 | None:intergenic | 35.0% |
| ! | TCTTCTTTGATCAGGTCTTT+TGG | - | chr3.4:77127742-77127761 | None:intergenic | 35.0% |
| ! | TGGTTACAAGTCAGGTTTTA+AGG | + | chr3.4:77127998-77128017 | MS.gene69750:CDS | 35.0% |
| ! | TTTGTTTAGGCTGCAAGTTT+TGG | + | chr3.4:77129107-77129126 | MS.gene69750:intron | 35.0% |
| !! | ATATGTGCTGCTTAGCTATA+GGG | + | chr3.4:77128311-77128330 | MS.gene69750:intron | 35.0% |
| !!! | TACAAGTCAGGTTTTAAGGT+TGG | + | chr3.4:77128002-77128021 | MS.gene69750:CDS | 35.0% |
| AATAACAACTCCTCTTTCGC+AGG | + | chr3.4:77127891-77127910 | MS.gene69750:CDS | 40.0% | |
| ACTGAATCTCTGTATCTTGG+AGG | - | chr3.4:77128924-77128943 | None:intergenic | 40.0% | |
| ATTGGAGATTATACCTGAGC+AGG | - | chr3.4:77129194-77129213 | None:intergenic | 40.0% | |
| CAAAAATACCATGGAGTTGG+TGG | - | chr3.4:77128995-77129014 | None:intergenic | 40.0% | |
| CATGGAAAAAAGTGGTCCAT+TGG | - | chr3.4:77127865-77127884 | None:intergenic | 40.0% | |
| CCAAGTAGTGATCTCAATGA+TGG | + | chr3.4:77127819-77127838 | MS.gene69750:CDS | 40.0% | |
| CCATCATTGAGATCACTACT+TGG | - | chr3.4:77127822-77127841 | None:intergenic | 40.0% | |
| CCGTCATAGTGATGAAGAAT+TGG | - | chr3.4:77129523-77129542 | None:intergenic | 40.0% | |
| CCTCAAAAATACCATGGAGT+TGG | - | chr3.4:77128998-77129017 | None:intergenic | 40.0% | |
| CTCAGTTCAAGACGAAACTT+AGG | - | chr3.4:77129547-77129566 | None:intergenic | 40.0% | |
| CTTACTTCCATAAGCTCTTC+AGG | + | chr3.4:77129334-77129353 | MS.gene69750:intron | 40.0% | |
| GCAGACCTACAAAATTTACC+AGG | - | chr3.4:77128902-77128921 | None:intergenic | 40.0% | |
| TCTTTCGCAGGATTCAACAA+GGG | + | chr3.4:77127903-77127922 | MS.gene69750:CDS | 40.0% | |
| TTGGAGATTATACCTGAGCA+GGG | - | chr3.4:77129193-77129212 | None:intergenic | 40.0% | |
| TTGTGTGGCATGGAAAAAAG+TGG | - | chr3.4:77127873-77127892 | None:intergenic | 40.0% | |
| TTTGGAAGATCTCAGTTCCA+TGG | - | chr3.4:77128746-77128765 | None:intergenic | 40.0% | |
| TTTGGACACATGATGTTTGC+AGG | + | chr3.4:77129444-77129463 | MS.gene69750:intron | 40.0% | |
| ! | GTAGTGATCTCAATGATGGA+TGG | + | chr3.4:77127823-77127842 | MS.gene69750:CDS | 40.0% |
| !! | CACTAAAGATCGGTATCGAT+TGG | + | chr3.4:77128664-77128683 | MS.gene69750:intron | 40.0% |
| !! | CATATGTGCTGCTTAGCTAT+AGG | + | chr3.4:77128310-77128329 | MS.gene69750:intron | 40.0% |
| !! | CCAACTCCATGGTATTTTTG+AGG | + | chr3.4:77128995-77129014 | MS.gene69750:CDS | 40.0% |
| AGTTTGTGAGCCATTAGAGG+AGG | + | chr3.4:77129486-77129505 | MS.gene69750:CDS | 45.0% | |
| CCACCAATGGTTTCATTCCT+AGG | - | chr3.4:77128173-77128192 | None:intergenic | 45.0% | |
| CCTAGGAATGAAACCATTGG+TGG | + | chr3.4:77128170-77128189 | MS.gene69750:CDS | 45.0% | |
| CTCTTTCGCAGGATTCAACA+AGG | + | chr3.4:77127902-77127921 | MS.gene69750:CDS | 45.0% | |
| CTTGTTGAATCCTGCGAAAG+AGG | - | chr3.4:77127904-77127923 | None:intergenic | 45.0% | |
| GACTGTTTGACAGAGCTTCA+TGG | + | chr3.4:77129278-77129297 | MS.gene69750:intron | 45.0% | |
| GCTGCTTAGCTATAGGGATT+GGG | + | chr3.4:77128317-77128336 | MS.gene69750:intron | 45.0% | |
| TACAGAAAAAGGGGTAACCC+TGG | - | chr3.4:77128960-77128979 | None:intergenic | 45.0% | |
| TATTGATCCAACAGCTTGGG+AGG | + | chr3.4:77129139-77129158 | MS.gene69750:CDS | 45.0% | |
| TTCCTAGGTAAGGACTCAGA+TGG | - | chr3.4:77128158-77128177 | None:intergenic | 45.0% | |
| TTCTTATCCTCCCAAGCTGT+TGG | - | chr3.4:77129149-77129168 | None:intergenic | 45.0% | |
| ! | ATCAGGTCTTTTGGTCACGT+TGG | - | chr3.4:77127733-77127752 | None:intergenic | 45.0% |
| ! | GGAGTTGTTATTGTGTGGCA+TGG | - | chr3.4:77127883-77127902 | None:intergenic | 45.0% |
| ! | TGCTGCTTAGCTATAGGGAT+TGG | + | chr3.4:77128316-77128335 | MS.gene69750:intron | 45.0% |
| !! | CTTTCAGGCACTGTCTCTTT+TGG | + | chr3.4:77129671-77129690 | MS.gene69750:intron | 45.0% |
| !! | GTTTAGGCTGCAAGTTTTGG+AGG | + | chr3.4:77129110-77129129 | MS.gene69750:intron | 45.0% |
| !!! | TCTTTTGAGGTTCTCTGCCA+TGG | - | chr3.4:77128222-77128241 | None:intergenic | 45.0% |
| CACCATCTGAGTCCTTACCT+AGG | + | chr3.4:77128153-77128172 | MS.gene69750:CDS | 50.0% | |
| CTAGGTAAGGACTCAGATGG+TGG | - | chr3.4:77128155-77128174 | None:intergenic | 50.0% | |
| TATTCCACCCACCAACTCCA+TGG | + | chr3.4:77128984-77129003 | MS.gene69750:CDS | 50.0% | |
| TCTTGAACTGAGCGTGTCTG+AGG | + | chr3.4:77129555-77129574 | MS.gene69750:CDS | 50.0% | |
| !! | AATACCATGGAGTTGGTGGG+TGG | - | chr3.4:77128991-77129010 | None:intergenic | 50.0% |
| !! | TGGGAGGATAAGAAGTGCCC+CGG | + | chr3.4:77129155-77129174 | MS.gene69750:CDS | 55.0% |
| AGCAGGGAAGCGAGATTCGC+CGG | - | chr3.4:77129177-77129196 | None:intergenic | 60.0% | |
| CGAATCTCGCTTCCCTGCTC+AGG | + | chr3.4:77129178-77129197 | MS.gene69750:CDS | 60.0% | |
| CAGGGAAGCGAGATTCGCCG+GGG | - | chr3.4:77129175-77129194 | None:intergenic | 65.0% | |
| GCAGGGAAGCGAGATTCGCC+GGG | - | chr3.4:77129176-77129195 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 77127621 | 77129749 | 77127621 | ID=MS.gene69750 |
| chr3.4 | mRNA | 77127621 | 77129749 | 77127621 | ID=MS.gene69750.t1;Parent=MS.gene69750 |
| chr3.4 | exon | 77127621 | 77128251 | 77127621 | ID=MS.gene69750.t1.exon1;Parent=MS.gene69750.t1 |
| chr3.4 | CDS | 77127621 | 77128251 | 77127621 | ID=cds.MS.gene69750.t1;Parent=MS.gene69750.t1 |
| chr3.4 | exon | 77128916 | 77129016 | 77128916 | ID=MS.gene69750.t1.exon2;Parent=MS.gene69750.t1 |
| chr3.4 | CDS | 77128916 | 77129016 | 77128916 | ID=cds.MS.gene69750.t1;Parent=MS.gene69750.t1 |
| chr3.4 | exon | 77129116 | 77129199 | 77129116 | ID=MS.gene69750.t1.exon3;Parent=MS.gene69750.t1 |
| chr3.4 | CDS | 77129116 | 77129199 | 77129116 | ID=cds.MS.gene69750.t1;Parent=MS.gene69750.t1 |
| chr3.4 | exon | 77129466 | 77129576 | 77129466 | ID=MS.gene69750.t1.exon4;Parent=MS.gene69750.t1 |
| chr3.4 | CDS | 77129466 | 77129576 | 77129466 | ID=cds.MS.gene69750.t1;Parent=MS.gene69750.t1 |
| chr3.4 | exon | 77129678 | 77129749 | 77129678 | ID=MS.gene69750.t1.exon5;Parent=MS.gene69750.t1 |
| chr3.4 | CDS | 77129678 | 77129749 | 77129678 | ID=cds.MS.gene69750.t1;Parent=MS.gene69750.t1 |
| Gene Sequence |
| Protein sequence |
