Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70169.t1 | XP_003630362.1 | 95.5 | 645 | 24 | 2 | 1 | 645 | 1 | 640 | 3.70E-254 | 887.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70169.t1 | Q9MA92 | 48.4 | 415 | 175 | 6 | 1 | 415 | 1 | 376 | 4.1e-84 | 313.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70169.t1 | G7LFP4 | 95.5 | 645 | 24 | 2 | 1 | 645 | 1 | 640 | 2.7e-254 | 887.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050227 | MS.gene70169 | 0.809742 | 1.63E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene70169 | 0.808193 | 3.49E-50 | -1.69E-46 |
| MS.gene052309 | MS.gene70169 | -0.818297 | 2.11E-52 | -1.69E-46 |
| MS.gene052376 | MS.gene70169 | 0.806627 | 7.50E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene70169 | 0.819644 | 1.04E-52 | -1.69E-46 |
| MS.gene053216 | MS.gene70169 | 0.816718 | 4.79E-52 | -1.69E-46 |
| MS.gene054942 | MS.gene70169 | 0.802034 | 6.80E-49 | -1.69E-46 |
| MS.gene055608 | MS.gene70169 | 0.802311 | 5.96E-49 | -1.69E-46 |
| MS.gene059249 | MS.gene70169 | 0.807654 | 4.55E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene70169 | 0.814784 | 1.29E-51 | -1.69E-46 |
| MS.gene060586 | MS.gene70169 | 0.812012 | 5.25E-51 | -1.69E-46 |
| MS.gene061040 | MS.gene70169 | -0.811904 | 5.54E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70169 | MS.gene00896 | PPI |
| MS.gene70169 | MS.gene75229 | PPI |
| MS.gene70169 | MS.gene071947 | PPI |
| MS.gene01826 | MS.gene70169 | PPI |
| MS.gene70169 | MS.gene002174 | PPI |
| MS.gene70169 | MS.gene047904 | PPI |
| MS.gene002867 | MS.gene70169 | PPI |
| MS.gene70169 | MS.gene047083 | PPI |
| MS.gene70169 | MS.gene93193 | PPI |
| MS.gene70169 | MS.gene002865 | PPI |
| MS.gene70169 | MS.gene01827 | PPI |
| MS.gene70169 | MS.gene99533 | PPI |
| MS.gene70169 | MS.gene01838 | PPI |
| MS.gene70169 | MS.gene84485 | PPI |
| MS.gene01146 | MS.gene70169 | PPI |
| MS.gene70169 | MS.gene00895 | PPI |
| MS.gene70169 | MS.gene01143 | PPI |
| MS.gene70169 | MS.gene002864 | PPI |
| MS.gene70169 | MS.gene00893 | PPI |
| MS.gene70169 | MS.gene047901 | PPI |
| MS.gene70169 | MS.gene63019 | PPI |
| MS.gene70169 | MS.gene002176 | PPI |
| MS.gene33602 | MS.gene70169 | PPI |
| MS.gene70169 | MS.gene026637 | PPI |
| MS.gene70169 | MS.gene026126 | PPI |
| MS.gene071949 | MS.gene70169 | PPI |
| MS.gene70169 | MS.gene047900 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70169.t1 | MTR_8g094760 | 96.279 | 645 | 19 | 2 | 1 | 645 | 1 | 640 | 0.0 | 1242 |
| MS.gene70169.t1 | MTR_8g094760 | 96.059 | 609 | 19 | 2 | 37 | 645 | 25 | 628 | 0.0 | 1167 |
| MS.gene70169.t1 | MTR_3g096990 | 60.932 | 622 | 201 | 6 | 36 | 636 | 29 | 629 | 0.0 | 675 |
| MS.gene70169.t1 | MTR_3g096990 | 61.265 | 506 | 152 | 5 | 36 | 523 | 29 | 508 | 0.0 | 535 |
| MS.gene70169.t1 | MTR_3g096990 | 56.371 | 259 | 106 | 3 | 384 | 636 | 466 | 723 | 1.83e-77 | 261 |
| MS.gene70169.t1 | MTR_1g030010 | 46.053 | 456 | 210 | 4 | 73 | 513 | 145 | 579 | 2.05e-110 | 352 |
| MS.gene70169.t1 | MTR_1g030010 | 35.981 | 214 | 76 | 6 | 467 | 643 | 638 | 827 | 2.52e-20 | 96.3 |
| MS.gene70169.t1 | MTR_3g113290 | 38.750 | 320 | 147 | 6 | 1 | 273 | 1 | 318 | 2.49e-43 | 168 |
| MS.gene70169.t1 | MTR_1g024095 | 37.954 | 303 | 154 | 6 | 1 | 273 | 1 | 299 | 9.43e-40 | 157 |
| MS.gene70169.t1 | MTR_1g024095 | 37.954 | 303 | 154 | 6 | 1 | 273 | 1 | 299 | 1.05e-39 | 157 |
| MS.gene70169.t1 | MTR_5g021810 | 35.410 | 305 | 160 | 6 | 1 | 273 | 1 | 300 | 5.75e-39 | 154 |
| MS.gene70169.t1 | MTR_5g021810 | 35.390 | 308 | 155 | 6 | 1 | 273 | 1 | 299 | 1.25e-38 | 152 |
| MS.gene70169.t1 | MTR_4g094848 | 37.075 | 294 | 117 | 7 | 1 | 265 | 1 | 255 | 2.21e-36 | 146 |
| MS.gene70169.t1 | MTR_5g016830 | 32.987 | 385 | 184 | 12 | 1 | 357 | 1 | 339 | 7.15e-34 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70169.t1 | AT3G05270 | 42.530 | 656 | 260 | 10 | 1 | 580 | 1 | 615 | 1.12e-137 | 416 |
| MS.gene70169.t1 | AT3G05270 | 42.530 | 656 | 260 | 10 | 1 | 580 | 1 | 615 | 1.12e-137 | 416 |
| MS.gene70169.t1 | AT3G05270 | 42.530 | 656 | 260 | 10 | 1 | 580 | 1 | 615 | 1.12e-137 | 416 |
| MS.gene70169.t1 | AT1G21810 | 37.345 | 565 | 253 | 14 | 86 | 584 | 13 | 542 | 2.32e-78 | 261 |
| MS.gene70169.t1 | AT1G21810 | 28.826 | 281 | 136 | 8 | 386 | 640 | 381 | 623 | 4.82e-13 | 72.8 |
| MS.gene70169.t1 | AT1G21810 | 37.345 | 565 | 253 | 14 | 86 | 584 | 13 | 542 | 2.32e-78 | 261 |
| MS.gene70169.t1 | AT1G21810 | 28.826 | 281 | 136 | 8 | 386 | 640 | 381 | 623 | 4.82e-13 | 72.8 |
| MS.gene70169.t1 | AT1G77580 | 47.500 | 320 | 134 | 5 | 72 | 390 | 28 | 314 | 3.13e-75 | 253 |
| MS.gene70169.t1 | AT1G77580 | 47.500 | 320 | 134 | 5 | 72 | 390 | 28 | 314 | 4.45e-74 | 253 |
| MS.gene70169.t1 | AT1G77580 | 32.168 | 286 | 139 | 6 | 380 | 639 | 482 | 738 | 9.37e-20 | 94.4 |
| MS.gene70169.t1 | AT1G77580 | 47.500 | 320 | 134 | 5 | 72 | 390 | 62 | 348 | 6.77e-74 | 253 |
| MS.gene70169.t1 | AT1G77580 | 32.168 | 286 | 139 | 6 | 380 | 639 | 516 | 772 | 8.37e-20 | 94.7 |
| MS.gene70169.t1 | AT1G77580 | 47.500 | 320 | 134 | 5 | 72 | 390 | 62 | 348 | 6.77e-74 | 253 |
| MS.gene70169.t1 | AT1G77580 | 32.168 | 286 | 139 | 6 | 380 | 639 | 516 | 772 | 8.37e-20 | 94.7 |
| MS.gene70169.t1 | AT1G19835 | 38.333 | 300 | 147 | 5 | 1 | 273 | 1 | 289 | 2.37e-46 | 177 |
| MS.gene70169.t1 | AT1G19835 | 38.333 | 300 | 147 | 5 | 1 | 273 | 1 | 289 | 2.37e-46 | 177 |
| MS.gene70169.t1 | AT1G19835 | 38.333 | 300 | 147 | 5 | 1 | 273 | 1 | 289 | 2.37e-46 | 177 |
| MS.gene70169.t1 | AT1G19835 | 38.333 | 300 | 147 | 5 | 1 | 273 | 1 | 289 | 2.37e-46 | 177 |
| MS.gene70169.t1 | AT1G19835 | 38.333 | 300 | 147 | 5 | 1 | 273 | 1 | 289 | 2.37e-46 | 177 |
| MS.gene70169.t1 | AT1G19835 | 38.333 | 300 | 147 | 5 | 1 | 273 | 1 | 289 | 2.37e-46 | 177 |
| MS.gene70169.t1 | AT1G21810 | 33.411 | 431 | 209 | 11 | 218 | 584 | 3 | 419 | 9.98e-41 | 155 |
| MS.gene70169.t1 | AT1G21810 | 28.826 | 281 | 136 | 8 | 386 | 640 | 258 | 500 | 4.00e-13 | 72.8 |
| MS.gene70169.t1 | AT1G47900 | 33.626 | 342 | 159 | 6 | 1 | 275 | 1 | 341 | 1.44e-38 | 153 |
| MS.gene70169.t1 | AT1G47900 | 33.626 | 342 | 159 | 6 | 1 | 275 | 1 | 341 | 1.51e-38 | 153 |
| MS.gene70169.t1 | AT1G47900 | 33.626 | 342 | 159 | 6 | 1 | 275 | 1 | 341 | 1.51e-38 | 153 |
| MS.gene70169.t1 | AT4G36120 | 36.545 | 301 | 161 | 4 | 1 | 273 | 1 | 299 | 1.63e-37 | 150 |
| MS.gene70169.t1 | AT4G36120 | 36.545 | 301 | 161 | 4 | 1 | 273 | 1 | 299 | 1.63e-37 | 150 |
| MS.gene70169.t1 | AT2G23360 | 32.095 | 296 | 134 | 9 | 1 | 273 | 1 | 252 | 2.24e-22 | 102 |
Find 106 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTATCTCCTTCTTTGTTT+TGG | 0.200345 | 4.1:-7828635 | None:intergenic |
| CTGCTCACACTCTTGCTTCT+TGG | 0.211444 | 4.1:-7829658 | None:intergenic |
| TCTCTCAAGTTCGAATCTTC+TGG | 0.215588 | 4.1:-7827774 | None:intergenic |
| AACAGCTAGTAAGCAAAATT+TGG | 0.251696 | 4.1:+7827988 | MS.gene70169:CDS |
| CTGCTTTACCATGTCTTCTT+TGG | 0.253352 | 4.1:-7827063 | None:intergenic |
| TTCAAGCTTAGCAACCTTCT+TGG | 0.263795 | 4.1:-7828017 | None:intergenic |
| CGGCTTCCACTTTCTGTATC+TGG | 0.277252 | 4.1:-7828328 | None:intergenic |
| TGAGTTTATTGAATCTCTTT+TGG | 0.286597 | 4.1:-7829590 | None:intergenic |
| GGAAAAGAAGCTGGAGAAAA+TGG | 0.291680 | 4.1:+7828447 | MS.gene70169:CDS |
| CTGATTTCTCGAGCTGCATT+TGG | 0.306496 | 4.1:-7828510 | None:intergenic |
| AGTGGAAGCCGTTATGTTAA+TGG | 0.328560 | 4.1:+7828340 | MS.gene70169:CDS |
| ATTCTTGAATTGATCAAATT+CGG | 0.336313 | 4.1:-7828215 | None:intergenic |
| GAGAAAAGCCGTAATGGATT+TGG | 0.355781 | 4.1:+7829625 | MS.gene70169:CDS |
| GACTTGAGGAACTAGAATTC+AGG | 0.356240 | 4.1:+7827930 | MS.gene70169:CDS |
| GGTGTACTAACTTCTTCAAT+TGG | 0.366789 | 4.1:-7826963 | None:intergenic |
| CCAGGCGAGACGGAGAGTTC+AGG | 0.368157 | 4.1:+7826139 | MS.gene70169:CDS |
| CATTTAATGTGAATGATAAT+AGG | 0.372447 | 4.1:+7828077 | MS.gene70169:CDS |
| AGTTATTTGCCACAGCTTCA+TGG | 0.375858 | 4.1:-7827736 | None:intergenic |
| GATTGAAAAGAATGCCGAAT+TGG | 0.383971 | 4.1:+7828426 | MS.gene70169:CDS |
| AGGTACAATGGAAGCTGAAA+TGG | 0.392441 | 4.1:+7828396 | MS.gene70169:CDS |
| CCTGAACTCTCCGTCTCGCC+TGG | 0.392760 | 4.1:-7826139 | None:intergenic |
| GCTCTTGCACTTCTCTGGCT+TGG | 0.397210 | 4.1:-7827706 | None:intergenic |
| ACACAACAAAGTCCCCAAAA+AGG | 0.401435 | 4.1:+7829526 | MS.gene70169:CDS |
| GAATCTCTTCCTCCAATGAA+TGG | 0.402374 | 4.1:-7828711 | None:intergenic |
| TACTAGCTGTTTCAGCAGCT+TGG | 0.405239 | 4.1:-7827976 | None:intergenic |
| GGTGACTAACTCGGTCTTCA+AGG | 0.409043 | 4.1:-7827646 | None:intergenic |
| CGAATTAGCTGCAGCTCTGT+TGG | 0.410377 | 4.1:+7827031 | MS.gene70169:CDS |
| TGAACTTACCAAATCCATTA+CGG | 0.432010 | 4.1:-7829633 | None:intergenic |
| TCGCGATTTGAAGTCAAAAC+AGG | 0.434769 | 4.1:+7828861 | MS.gene70169:CDS |
| TTCAATCAAGAGCAGGAAGT+TGG | 0.455060 | 4.1:+7828762 | MS.gene70169:CDS |
| ATCTGAAATGTTATCTGTAA+AGG | 0.458369 | 4.1:-7828131 | None:intergenic |
| CTAACTTCTTCAATTGGTGC+AGG | 0.462359 | 4.1:-7826957 | None:intergenic |
| ACCGAGTTAGTCACCTTGAT+GGG | 0.462981 | 4.1:+7827654 | MS.gene70169:CDS |
| TGGACAGGAGGAGTTGGTTA+TGG | 0.464689 | 4.1:+7826092 | MS.gene70169:CDS |
| GTTGAAGTCTCTTGCAACAT+TGG | 0.467526 | 4.1:+7829450 | MS.gene70169:CDS |
| CATGGATGATTTCCTTGAGA+TGG | 0.470382 | 4.1:+7828288 | MS.gene70169:CDS |
| GCTGCCTCATACACTCTTTG+AGG | 0.477884 | 4.1:-7827679 | None:intergenic |
| GATAAGAGCAGCAGAATTGA+AGG | 0.478240 | 4.1:+7828540 | MS.gene70169:CDS |
| TGTTAATGGAGGACGAGTAT+TGG | 0.478665 | 4.1:+7828354 | MS.gene70169:CDS |
| GAGACTTGATGCTGTGGAGA+AGG | 0.483646 | 4.1:+7827874 | MS.gene70169:CDS |
| CTGCTTTCCAAGAGATGCAA+TGG | 0.484799 | 4.1:-7829428 | None:intergenic |
| GACCGAGTTAGTCACCTTGA+TGG | 0.485370 | 4.1:+7827653 | MS.gene70169:CDS |
| TGCCGAATTGGAAAAGAAGC+TGG | 0.488229 | 4.1:+7828438 | MS.gene70169:CDS |
| GTTGCTGAAGAAGCTGTCTC+AGG | 0.493553 | 4.1:+7827095 | MS.gene70169:CDS |
| GTATTGGATCAATCTATTGT+TGG | 0.494117 | 4.1:+7828370 | MS.gene70169:CDS |
| AAGTCATCGGAGAAAAGTCC+AGG | 0.496717 | 4.1:+7826121 | MS.gene70169:CDS |
| GGCAAATAACTCACATGACT+CGG | 0.497487 | 4.1:+7827748 | MS.gene70169:CDS |
| GGTGATAGAGTAGCTTGGAT+TGG | 0.502409 | 4.1:-7826918 | None:intergenic |
| CTGCCTCATACACTCTTTGA+GGG | 0.505138 | 4.1:-7827678 | None:intergenic |
| GAAAGAAACCAAAACAAAGA+AGG | 0.505936 | 4.1:+7828627 | MS.gene70169:CDS |
| AGCTCGAGAAATCAGAGAAT+CGG | 0.507513 | 4.1:+7828518 | MS.gene70169:CDS |
| CAAGAAGCAAGAGTGTGAGC+AGG | 0.509068 | 4.1:+7829659 | MS.gene70169:CDS |
| GGGCCCTCAAAGAGTGTATG+AGG | 0.511371 | 4.1:+7827675 | MS.gene70169:CDS |
| AGAATTCAGGATTGCAGAGA+GGG | 0.513958 | 4.1:+7827943 | MS.gene70169:CDS |
| ACTTCACAAGTTAACTCCAT+AGG | 0.515278 | 4.1:-7829502 | None:intergenic |
| AGATAAACTTGATGTAGAGA+TGG | 0.518264 | 4.1:+7828474 | MS.gene70169:CDS |
| TCAGGACAAAGAACTTGCAT+TGG | 0.521630 | 4.1:+7829375 | MS.gene70169:intron |
| CTCAAGTTCAGCAAGATGCC+AGG | 0.522890 | 4.1:+7828815 | MS.gene70169:CDS |
| ATGATTTCCTTGAGATGGAA+AGG | 0.523962 | 4.1:+7828293 | MS.gene70169:CDS |
| ACTCATGAGAAAAGCCGTAA+TGG | 0.524338 | 4.1:+7829619 | MS.gene70169:CDS |
| ATTGGAGGAAGAGATTCAAA+AGG | 0.526916 | 4.1:+7828717 | MS.gene70169:CDS |
| GATAAACTTGATGTAGAGAT+GGG | 0.528053 | 4.1:+7828475 | MS.gene70169:CDS |
| TTCAACTGAGATCAATCTCA+TGG | 0.530613 | 4.1:+7828270 | MS.gene70169:CDS |
| ATCAAGTCTCCTCTGAAGAT+CGG | 0.535787 | 4.1:-7827861 | None:intergenic |
| TTTAAATGGACAGGAGGAGT+TGG | 0.537649 | 4.1:+7826086 | None:intergenic |
| AAGAAGCAAGAGTGTGAGCA+GGG | 0.538699 | 4.1:+7829660 | MS.gene70169:CDS |
| CTCGTCCTCCATTAACATAA+CGG | 0.539926 | 4.1:-7828348 | None:intergenic |
| TTTACAGATAACATTTCAGA+TGG | 0.540438 | 4.1:+7828133 | MS.gene70169:CDS |
| GAGAAAAGTTGCTGAGCTTG+AGG | 0.541808 | 4.1:+7827793 | MS.gene70169:CDS |
| TGATTCAGACAACAGCCCTA+TGG | 0.543080 | 4.1:+7829486 | MS.gene70169:CDS |
| CTTCACAAGTTAACTCCATA+GGG | 0.543569 | 4.1:-7829501 | None:intergenic |
| GCAGGCTTAGATGTGACCTC+TGG | 0.546710 | 4.1:-7826939 | None:intergenic |
| CTGAGAATTCAATCAAGAGC+AGG | 0.555581 | 4.1:+7828755 | MS.gene70169:CDS |
| CAGCAAGCCTTTCCATCTCA+AGG | 0.558005 | 4.1:-7828300 | None:intergenic |
| ACTCTTTGAGGGCCCCATCA+AGG | 0.563213 | 4.1:-7827667 | None:intergenic |
| ACAGATAACATTTCAGATGG+TGG | 0.563408 | 4.1:+7828136 | MS.gene70169:CDS |
| AAATTTGGAGAGCACCAAGA+AGG | 0.563758 | 4.1:+7828003 | MS.gene70169:CDS |
| GATCAATCTATTGTTGGTCA+AGG | 0.566842 | 4.1:+7828376 | MS.gene70169:CDS |
| CCCCATCAAGGTGACTAACT+CGG | 0.567534 | 4.1:-7827655 | None:intergenic |
| CTCAATATAAATTGAAGATG+CGG | 0.569123 | 4.1:-7828107 | None:intergenic |
| AATCAAGAGCAGGAAGTTGG+AGG | 0.569457 | 4.1:+7828765 | MS.gene70169:CDS |
| GCTTTGCCAGATACAGAAAG+TGG | 0.578039 | 4.1:+7828322 | MS.gene70169:CDS |
| GGAGAAAAGTCCAGGCGAGA+CGG | 0.589443 | 4.1:+7826129 | MS.gene70169:CDS |
| TATTGTTGGTCAAGGTACAA+TGG | 0.590943 | 4.1:+7828384 | MS.gene70169:CDS |
| ATCAAGAGCAGGAAGTTGGA+GGG | 0.592927 | 4.1:+7828766 | MS.gene70169:CDS |
| TAGAATTCAGGATTGCAGAG+AGG | 0.594182 | 4.1:+7827942 | MS.gene70169:CDS |
| GCAAATAACTCACATGACTC+GGG | 0.598199 | 4.1:+7827749 | MS.gene70169:CDS |
| TCAGAGGAGACTTGATGCTG+TGG | 0.600308 | 4.1:+7827868 | MS.gene70169:CDS |
| GCTGCAAGACAGAAGAACTC+AGG | 0.602737 | 4.1:+7827623 | MS.gene70169:CDS |
| ACTGAAATTTGCTCAAACTG+AGG | 0.609862 | 4.1:+7828666 | MS.gene70169:CDS |
| CTATTCGCTCCGATCTTCAG+AGG | 0.616299 | 4.1:+7827852 | MS.gene70169:CDS |
| CCTCTGGTGATAGAGTAGCT+TGG | 0.616609 | 4.1:-7826923 | None:intergenic |
| GAACATGAGTCAGAACAGCT+TGG | 0.617775 | 4.1:-7828178 | None:intergenic |
| GCAAAAGATCCATGAAGCTG+TGG | 0.621012 | 4.1:+7827727 | MS.gene70169:CDS |
| GGCTGTTGTCTGAATCAAGT+AGG | 0.621986 | 4.1:-7829480 | None:intergenic |
| AATTAGTGCCAAAGAAGACA+TGG | 0.626226 | 4.1:+7827055 | MS.gene70169:CDS |
| GAGTCATGGATTTCAGTCTA+CGG | 0.630257 | 4.1:-7828048 | None:intergenic |
| CTGGGAGAAGGCTGAAAACG+AGG | 0.637297 | 4.1:+7827574 | MS.gene70169:CDS |
| GTTATGGCGGAGAAAGTCAT+CGG | 0.642989 | 4.1:+7826108 | MS.gene70169:CDS |
| GGAAGCCGTTATGTTAATGG+AGG | 0.654516 | 4.1:+7828343 | MS.gene70169:CDS |
| TGAGCTGCAATCTCGACTTG+AGG | 0.664109 | 4.1:+7827916 | MS.gene70169:CDS |
| AGATGCCAGGACTTTGCACA+AGG | 0.664420 | 4.1:+7828828 | MS.gene70169:CDS |
| CCGAGTTAGTCACCTTGATG+GGG | 0.664423 | 4.1:+7827655 | MS.gene70169:CDS |
| ACAGGAGGAGTTGGTTATGG+CGG | 0.665341 | 4.1:+7826095 | MS.gene70169:CDS |
| AAAGAAGCTGGAGAAAATGG+AGG | 0.684854 | 4.1:+7828450 | MS.gene70169:CDS |
| CCAAGCTACTCTATCACCAG+AGG | 0.697015 | 4.1:+7826923 | MS.gene70169:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTGTTTTTCATTTTATTT+AGG | + | chr4.1:7827551-7827570 | MS.gene70169:intron | 15.0% |
| !! | AATGCAATTTAATTGTAGTT+TGG | - | chr4.1:7829143-7829162 | None:intergenic | 20.0% |
| !! | ATCATAATCTTCTAACTTAA+TGG | + | chr4.1:7827488-7827507 | MS.gene70169:intron | 20.0% |
| !! | ATTAAATTGCATTTGTAGTT+TGG | + | chr4.1:7829150-7829169 | MS.gene70169:intron | 20.0% |
| !! | ATTCTTGAATTGATCAAATT+CGG | - | chr4.1:7828218-7828237 | None:intergenic | 20.0% |
| !! | ATTGCAAAATACATTAAACA+CGG | - | chr4.1:7828926-7828945 | None:intergenic | 20.0% |
| !! | CATTTAATGTGAATGATAAT+AGG | + | chr4.1:7828077-7828096 | MS.gene70169:CDS | 20.0% |
| !! | GAGATGAAAAAAAAAATTGA+GGG | + | chr4.1:7826417-7826436 | MS.gene70169:intron | 20.0% |
| !! | TAATCTACGAATTAAATATC+TGG | - | chr4.1:7827136-7827155 | None:intergenic | 20.0% |
| !! | TCATAATCTTCTAACTTAAT+GGG | + | chr4.1:7827489-7827508 | MS.gene70169:intron | 20.0% |
| !!! | ACCTTCTTCTTTATATTTTT+TGG | - | chr4.1:7826988-7827007 | None:intergenic | 20.0% |
| !!! | ATATCTTTTCATATATACCT+TGG | - | chr4.1:7827532-7827551 | None:intergenic | 20.0% |
| !!! | CAGATACTAAGTTTTTTATA+TGG | - | chr4.1:7829350-7829369 | None:intergenic | 20.0% |
| !!! | CCTTCTTCTTTATATTTTTT+GGG | - | chr4.1:7826987-7827006 | None:intergenic | 20.0% |
| !!! | CTATTTTCATCTATAATAAC+AGG | + | chr4.1:7826594-7826613 | MS.gene70169:intron | 20.0% |
| !!! | TTTTTCATTTTATTTAGGCT+GGG | + | chr4.1:7827556-7827575 | MS.gene70169:intron | 20.0% |
| ! | AAAATTAATTACAGCTGCAA+AGG | - | chr4.1:7827277-7827296 | None:intergenic | 25.0% |
| ! | AATCAGATTCATCACATTAT+TGG | - | chr4.1:7826861-7826880 | None:intergenic | 25.0% |
| ! | ATTGTTTCAACCAACAAAAA+AGG | - | chr4.1:7829016-7829035 | None:intergenic | 25.0% |
| ! | CCCAAAAAATATAAAGAAGA+AGG | + | chr4.1:7826984-7827003 | MS.gene70169:CDS | 25.0% |
| ! | CTCAATATAAATTGAAGATG+CGG | - | chr4.1:7828110-7828129 | None:intergenic | 25.0% |
| ! | GAATGTGTACTAGATAATAT+GGG | + | chr4.1:7826346-7826365 | MS.gene70169:intron | 25.0% |
| ! | GATTTCAAAAATCCATTCAT+TGG | + | chr4.1:7828699-7828718 | MS.gene70169:CDS | 25.0% |
| ! | GGAGATGAAAAAAAAAATTG+AGG | + | chr4.1:7826416-7826435 | MS.gene70169:intron | 25.0% |
| ! | GTTAAGTAATCATATTGCAT+TGG | + | chr4.1:7829315-7829334 | MS.gene70169:intron | 25.0% |
| ! | TCATAAAAAGTAATGCTAGA+AGG | - | chr4.1:7828960-7828979 | None:intergenic | 25.0% |
| ! | TTCAAGAATAAAAAGACTAC+TGG | + | chr4.1:7828229-7828248 | MS.gene70169:CDS | 25.0% |
| ! | TTTAATTGTAGTTTGGACTA+TGG | - | chr4.1:7829136-7829155 | None:intergenic | 25.0% |
| ! | TTTACAGATAACATTTCAGA+TGG | + | chr4.1:7828133-7828152 | MS.gene70169:CDS | 25.0% |
| !! | ATCTGAAATGTTATCTGTAA+AGG | - | chr4.1:7828134-7828153 | None:intergenic | 25.0% |
| !! | ATTAAATGTTTTACGAGTCA+TGG | - | chr4.1:7828065-7828084 | None:intergenic | 25.0% |
| !! | ATTTTCTCAAGTGAAAATCT+CGG | + | chr4.1:7826382-7826401 | MS.gene70169:intron | 25.0% |
| !! | GAGTTTATTGAATCTCTTTT+GGG | - | chr4.1:7829592-7829611 | None:intergenic | 25.0% |
| !! | TGAGTTTATTGAATCTCTTT+TGG | - | chr4.1:7829593-7829612 | None:intergenic | 25.0% |
| !!! | AAGAAAGTGTCTTTACTTTA+AGG | + | chr4.1:7826504-7826523 | MS.gene70169:intron | 25.0% |
| !!! | AGAAAGTGTCTTTACTTTAA+GGG | + | chr4.1:7826505-7826524 | MS.gene70169:intron | 25.0% |
| !!! | ATTCTTCAATCCTTTTTTGT+TGG | + | chr4.1:7829003-7829022 | MS.gene70169:intron | 25.0% |
| !!! | GTTTTTCATTTTATTTAGGC+TGG | + | chr4.1:7827555-7827574 | MS.gene70169:intron | 25.0% |
| !!! | TCAGTTTGCTAATACTTATT+TGG | + | chr4.1:7828884-7828903 | MS.gene70169:intron | 25.0% |
| !!! | TTTTTTTCTTCTAAGCATTC+AGG | + | chr4.1:7826802-7826821 | MS.gene70169:intron | 25.0% |
| AAAAACTTATCTACCAAACC+AGG | - | chr4.1:7827237-7827256 | None:intergenic | 30.0% | |
| AAAACTTATCTACCAAACCA+GGG | - | chr4.1:7827236-7827255 | None:intergenic | 30.0% | |
| AAACTATCTCAAGTTACAGT+AGG | - | chr4.1:7826646-7826665 | None:intergenic | 30.0% | |
| AACAGCTAGTAAGCAAAATT+TGG | + | chr4.1:7827988-7828007 | MS.gene70169:CDS | 30.0% | |
| AACATACATGCAGTCAAAAA+TGG | - | chr4.1:7826240-7826259 | None:intergenic | 30.0% | |
| AACTATCTCAAGTTACAGTA+GGG | - | chr4.1:7826645-7826664 | None:intergenic | 30.0% | |
| AACTGCTATTACTGGTATTT+AGG | - | chr4.1:7829298-7829317 | None:intergenic | 30.0% | |
| AAGGTAAGAAAAATGAACCA+TGG | - | chr4.1:7827451-7827470 | None:intergenic | 30.0% | |
| AGATAAACTTGATGTAGAGA+TGG | + | chr4.1:7828474-7828493 | MS.gene70169:CDS | 30.0% | |
| CATCTATAATAACAGGATAC+CGG | + | chr4.1:7826601-7826620 | MS.gene70169:intron | 30.0% | |
| GAAAGAAACCAAAACAAAGA+AGG | + | chr4.1:7828627-7828646 | MS.gene70169:CDS | 30.0% | |
| GAAGATTATGATGATAGTCA+TGG | - | chr4.1:7827480-7827499 | None:intergenic | 30.0% | |
| GATAAACTTGATGTAGAGAT+GGG | + | chr4.1:7828475-7828494 | MS.gene70169:CDS | 30.0% | |
| GATTACTTAACTGCTATTAC+TGG | - | chr4.1:7829306-7829325 | None:intergenic | 30.0% | |
| GGAATGTGTACTAGATAATA+TGG | + | chr4.1:7826345-7826364 | MS.gene70169:intron | 30.0% | |
| GTATATCAATAAATTTGCCC+TGG | + | chr4.1:7827216-7827235 | MS.gene70169:intron | 30.0% | |
| GTATTGGATCAATCTATTGT+TGG | + | chr4.1:7828370-7828389 | MS.gene70169:CDS | 30.0% | |
| TATGTTGTAATGAATCTGCT+CGG | + | chr4.1:7826827-7826846 | MS.gene70169:intron | 30.0% | |
| TCATATAAACAGCAACACAA+AGG | - | chr4.1:7829211-7829230 | None:intergenic | 30.0% | |
| TGAAAACAATGGTTATTGCT+CGG | + | chr4.1:7826684-7826703 | MS.gene70169:intron | 30.0% | |
| TGAACTTACCAAATCCATTA+CGG | - | chr4.1:7829636-7829655 | None:intergenic | 30.0% | |
| TTCAAAAATCCATTCATTGG+AGG | + | chr4.1:7828702-7828721 | MS.gene70169:CDS | 30.0% | |
| TTTCACAGAAGTTTAAACCA+AGG | + | chr4.1:7827512-7827531 | MS.gene70169:intron | 30.0% | |
| ! | AATTTTTCACCTCCTTTTTG+GGG | - | chr4.1:7829541-7829560 | None:intergenic | 30.0% |
| ! | AGAAAGATTTTCTGATGAAC+AGG | + | chr4.1:7826180-7826199 | MS.gene70169:CDS | 30.0% |
| ! | CAATTTTTCACCTCCTTTTT+GGG | - | chr4.1:7829542-7829561 | None:intergenic | 30.0% |
| ! | GAGATAGTTTGTAAATGTCT+AGG | + | chr4.1:7826656-7826675 | MS.gene70169:intron | 30.0% |
| ! | GAGATTTTCACTTGAGAAAA+TGG | - | chr4.1:7826383-7826402 | None:intergenic | 30.0% |
| ! | TCAATTTTTCACCTCCTTTT+TGG | - | chr4.1:7829543-7829562 | None:intergenic | 30.0% |
| !! | AACTATCTCCTTCTTTGTTT+TGG | - | chr4.1:7828638-7828657 | None:intergenic | 30.0% |
| !! | AACTTAGTATCTGCTATTTC+AGG | + | chr4.1:7829357-7829376 | MS.gene70169:intron | 30.0% |
| !! | ATGGTTCATTTTTCTTACCT+TGG | + | chr4.1:7827450-7827469 | MS.gene70169:intron | 30.0% |
| !! | GAAAGTGTCTTTACTTTAAG+GGG | + | chr4.1:7826506-7826525 | MS.gene70169:intron | 30.0% |
| !! | TGGTTCATTTTTCTTACCTT+GGG | + | chr4.1:7827451-7827470 | MS.gene70169:intron | 30.0% |
| AAACAGCAACACAAAGGAAT+TGG | - | chr4.1:7829205-7829224 | None:intergenic | 35.0% | |
| AACAGCAACACAAAGGAATT+GGG | - | chr4.1:7829204-7829223 | None:intergenic | 35.0% | |
| AATTAGTGCCAAAGAAGACA+TGG | + | chr4.1:7827055-7827074 | MS.gene70169:CDS | 35.0% | |
| ACAGATAACATTTCAGATGG+TGG | + | chr4.1:7828136-7828155 | MS.gene70169:CDS | 35.0% | |
| ACTTCACAAGTTAACTCCAT+AGG | - | chr4.1:7829505-7829524 | None:intergenic | 35.0% | |
| ATGATTTCCTTGAGATGGAA+AGG | + | chr4.1:7828293-7828312 | MS.gene70169:CDS | 35.0% | |
| ATTGGAGGAAGAGATTCAAA+AGG | + | chr4.1:7828717-7828736 | MS.gene70169:CDS | 35.0% | |
| CAAAAAACCATTGCATCTCT+TGG | + | chr4.1:7829421-7829440 | MS.gene70169:CDS | 35.0% | |
| CTTCACAAGTTAACTCCATA+GGG | - | chr4.1:7829504-7829523 | None:intergenic | 35.0% | |
| GATCAATCTATTGTTGGTCA+AGG | + | chr4.1:7828376-7828395 | MS.gene70169:CDS | 35.0% | |
| GATTGAAAAGAATGCCGAAT+TGG | + | chr4.1:7828426-7828445 | MS.gene70169:CDS | 35.0% | |
| GGTGTACTAACTTCTTCAAT+TGG | - | chr4.1:7826966-7826985 | None:intergenic | 35.0% | |
| TATTGTTGGTCAAGGTACAA+TGG | + | chr4.1:7828384-7828403 | MS.gene70169:CDS | 35.0% | |
| TCAATAAATTTGCCCTGGTT+TGG | + | chr4.1:7827221-7827240 | MS.gene70169:intron | 35.0% | |
| TCTAGGCTACATGAAAACAA+TGG | + | chr4.1:7826673-7826692 | MS.gene70169:intron | 35.0% | |
| TCTTTCACAATTCAGTCTTG+TGG | + | chr4.1:7826323-7826342 | MS.gene70169:intron | 35.0% | |
| TGTCTCAGGTATTTACTGTT+TGG | + | chr4.1:7827109-7827128 | MS.gene70169:intron | 35.0% | |
| TTCAACTGAGATCAATCTCA+TGG | + | chr4.1:7828270-7828289 | MS.gene70169:CDS | 35.0% | |
| TTTGTTGCAATGAATCTGCT+CGG | + | chr4.1:7826753-7826772 | MS.gene70169:intron | 35.0% | |
| ! | AAGATTTTCTGATGAACAGG+TGG | + | chr4.1:7826183-7826202 | MS.gene70169:intron | 35.0% |
| ! | ACTGAAATTTGCTCAAACTG+AGG | + | chr4.1:7828666-7828685 | MS.gene70169:CDS | 35.0% |
| ! | CAATTTTACTCACTGTCACA+TGG | + | chr4.1:7826275-7826294 | MS.gene70169:intron | 35.0% |
| ! | CTTTCACAATTCAGTCTTGT+GGG | + | chr4.1:7826324-7826343 | MS.gene70169:intron | 35.0% |
| !! | AAAATCTCGGTGTTTGTTGA+AGG | + | chr4.1:7826395-7826414 | MS.gene70169:intron | 35.0% |
| !! | ATTTTATTTAGGCTGGGAGA+AGG | + | chr4.1:7827562-7827581 | MS.gene70169:intron | 35.0% |
| !!! | AGTTCGCTTTTTAAGCATTC+AGG | + | chr4.1:7826728-7826747 | MS.gene70169:intron | 35.0% |
| !!! | CAAGAGATGCAATGGTTTTT+TGG | - | chr4.1:7829423-7829442 | None:intergenic | 35.0% |
| AAAGAAGCTGGAGAAAATGG+AGG | + | chr4.1:7828450-7828469 | MS.gene70169:CDS | 40.0% | |
| ACACAACAAAGTCCCCAAAA+AGG | + | chr4.1:7829526-7829545 | MS.gene70169:CDS | 40.0% | |
| ACAGCAACACAAAGGAATTG+GGG | - | chr4.1:7829203-7829222 | None:intergenic | 40.0% | |
| ACTCATGAGAAAAGCCGTAA+TGG | + | chr4.1:7829619-7829638 | MS.gene70169:CDS | 40.0% | |
| AGAATTCAGGATTGCAGAGA+GGG | + | chr4.1:7827943-7827962 | MS.gene70169:CDS | 40.0% | |
| AGCTCGAGAAATCAGAGAAT+CGG | + | chr4.1:7828518-7828537 | MS.gene70169:CDS | 40.0% | |
| AGGTACAATGGAAGCTGAAA+TGG | + | chr4.1:7828396-7828415 | MS.gene70169:CDS | 40.0% | |
| AGTGGAAGCCGTTATGTTAA+TGG | + | chr4.1:7828340-7828359 | MS.gene70169:CDS | 40.0% | |
| AGTTATTTGCCACAGCTTCA+TGG | - | chr4.1:7827739-7827758 | None:intergenic | 40.0% | |
| ATACCTTCACAGTTACAGCA+TGG | - | chr4.1:7826896-7826915 | None:intergenic | 40.0% | |
| CATGGATGATTTCCTTGAGA+TGG | + | chr4.1:7828288-7828307 | MS.gene70169:CDS | 40.0% | |
| CTAACTTCTTCAATTGGTGC+AGG | - | chr4.1:7826960-7826979 | None:intergenic | 40.0% | |
| CTCGTCCTCCATTAACATAA+CGG | - | chr4.1:7828351-7828370 | None:intergenic | 40.0% | |
| CTGAGAATTCAATCAAGAGC+AGG | + | chr4.1:7828755-7828774 | MS.gene70169:CDS | 40.0% | |
| CTGCTTTACCATGTCTTCTT+TGG | - | chr4.1:7827066-7827085 | None:intergenic | 40.0% | |
| GAATCTCTTCCTCCAATGAA+TGG | - | chr4.1:7828714-7828733 | None:intergenic | 40.0% | |
| GACAACGAGAGCAATTATTC+CGG | - | chr4.1:7826623-7826642 | None:intergenic | 40.0% | |
| GACTTGAGGAACTAGAATTC+AGG | + | chr4.1:7827930-7827949 | MS.gene70169:CDS | 40.0% | |
| GAGTCATGGATTTCAGTCTA+CGG | - | chr4.1:7828051-7828070 | None:intergenic | 40.0% | |
| GATAAGAGCAGCAGAATTGA+AGG | + | chr4.1:7828540-7828559 | MS.gene70169:CDS | 40.0% | |
| GCAAATAACTCACATGACTC+GGG | + | chr4.1:7827749-7827768 | MS.gene70169:CDS | 40.0% | |
| GGAAAAGAAGCTGGAGAAAA+TGG | + | chr4.1:7828447-7828466 | MS.gene70169:CDS | 40.0% | |
| GGCAAATAACTCACATGACT+CGG | + | chr4.1:7827748-7827767 | MS.gene70169:CDS | 40.0% | |
| GTTGAAGTCTCTTGCAACAT+TGG | + | chr4.1:7829450-7829469 | MS.gene70169:CDS | 40.0% | |
| TACCTTCACAGTTACAGCAT+GGG | - | chr4.1:7826895-7826914 | None:intergenic | 40.0% | |
| TACTCACTGTCACATGGTTT+GGG | + | chr4.1:7826281-7826300 | MS.gene70169:intron | 40.0% | |
| TAGAATTCAGGATTGCAGAG+AGG | + | chr4.1:7827942-7827961 | MS.gene70169:CDS | 40.0% | |
| TCAGGACAAAGAACTTGCAT+TGG | + | chr4.1:7829375-7829394 | MS.gene70169:intron | 40.0% | |
| TCTCTCAAGTTCGAATCTTC+TGG | - | chr4.1:7827777-7827796 | None:intergenic | 40.0% | |
| TGCATTTGTAGTTTGGACTC+TGG | + | chr4.1:7829157-7829176 | MS.gene70169:intron | 40.0% | |
| TGTTAATGGAGGACGAGTAT+TGG | + | chr4.1:7828354-7828373 | MS.gene70169:CDS | 40.0% | |
| TGTTGCAGACATTGTGAAAC+AGG | + | chr4.1:7826477-7826496 | MS.gene70169:intron | 40.0% | |
| TTACTCACTGTCACATGGTT+TGG | + | chr4.1:7826280-7826299 | MS.gene70169:intron | 40.0% | |
| TTCAAGCTTAGCAACCTTCT+TGG | - | chr4.1:7828020-7828039 | None:intergenic | 40.0% | |
| TTCAATCAAGAGCAGGAAGT+TGG | + | chr4.1:7828762-7828781 | MS.gene70169:CDS | 40.0% | |
| ! | AAAAATTGAGGGCGTGAATG+TGG | + | chr4.1:7826428-7826447 | MS.gene70169:intron | 40.0% |
| ! | ATCAAGTCTCCTCTGAAGAT+CGG | - | chr4.1:7827864-7827883 | None:intergenic | 40.0% |
| ! | ATTTTCCTTGTGCAAAGTCC+TGG | - | chr4.1:7828836-7828855 | None:intergenic | 40.0% |
| ! | CTCCAGCTTCTTTTCCAATT+CGG | - | chr4.1:7828443-7828462 | None:intergenic | 40.0% |
| ! | TCGCGATTTGAAGTCAAAAC+AGG | + | chr4.1:7828861-7828880 | MS.gene70169:CDS | 40.0% |
| ! | TGCTTCTTTTTGCTTGTCCA+TGG | + | chr4.1:7827431-7827450 | MS.gene70169:intron | 40.0% |
| !! | AAATTTGGAGAGCACCAAGA+AGG | + | chr4.1:7828003-7828022 | MS.gene70169:CDS | 40.0% |
| !! | GAGAAAAGCCGTAATGGATT+TGG | + | chr4.1:7829625-7829644 | MS.gene70169:CDS | 40.0% |
| AAGTCATCGGAGAAAAGTCC+AGG | + | chr4.1:7826121-7826140 | MS.gene70169:CDS | 45.0% | |
| AATCAAGAGCAGGAAGTTGG+AGG | + | chr4.1:7828765-7828784 | MS.gene70169:CDS | 45.0% | |
| ACCGAGTTAGTCACCTTGAT+GGG | + | chr4.1:7827654-7827673 | MS.gene70169:CDS | 45.0% | |
| ATCAAGAGCAGGAAGTTGGA+GGG | + | chr4.1:7828766-7828785 | MS.gene70169:CDS | 45.0% | |
| ATGATAGTCATGGCTTCCCA+AGG | - | chr4.1:7827470-7827489 | None:intergenic | 45.0% | |
| CAACAAAGTCCCCAAAAAGG+AGG | + | chr4.1:7829529-7829548 | MS.gene70169:CDS | 45.0% | |
| CAGCAACACAAAGGAATTGG+GGG | - | chr4.1:7829202-7829221 | None:intergenic | 45.0% | |
| CTCGGTCTGCAAATTTCTCA+TGG | + | chr4.1:7826702-7826721 | MS.gene70169:intron | 45.0% | |
| CTGATTTCTCGAGCTGCATT+TGG | - | chr4.1:7828513-7828532 | None:intergenic | 45.0% | |
| CTGCCTCATACACTCTTTGA+GGG | - | chr4.1:7827681-7827700 | None:intergenic | 45.0% | |
| CTGCTTTCCAAGAGATGCAA+TGG | - | chr4.1:7829431-7829450 | None:intergenic | 45.0% | |
| CTTCACAACCATCATGATCC+CGG | + | chr4.1:7827374-7827393 | MS.gene70169:intron | 45.0% | |
| GAACATGAGTCAGAACAGCT+TGG | - | chr4.1:7828181-7828200 | None:intergenic | 45.0% | |
| GAGAAAAGTTGCTGAGCTTG+AGG | + | chr4.1:7827793-7827812 | MS.gene70169:CDS | 45.0% | |
| GCAAAAGATCCATGAAGCTG+TGG | + | chr4.1:7827727-7827746 | MS.gene70169:CDS | 45.0% | |
| GCTTTGCCAGATACAGAAAG+TGG | + | chr4.1:7828322-7828341 | MS.gene70169:CDS | 45.0% | |
| GGAAGCCGTTATGTTAATGG+AGG | + | chr4.1:7828343-7828362 | MS.gene70169:CDS | 45.0% | |
| GGCTGTTGTCTGAATCAAGT+AGG | - | chr4.1:7829483-7829502 | None:intergenic | 45.0% | |
| GGTGATAGAGTAGCTTGGAT+TGG | - | chr4.1:7826921-7826940 | None:intergenic | 45.0% | |
| TCCTAACTCCTAACGTGAAC+CGG | - | chr4.1:7827396-7827415 | None:intergenic | 45.0% | |
| TGATTCAGACAACAGCCCTA+TGG | + | chr4.1:7829486-7829505 | MS.gene70169:CDS | 45.0% | |
| TGCCGAATTGGAAAAGAAGC+TGG | + | chr4.1:7828438-7828457 | MS.gene70169:CDS | 45.0% | |
| TTCCCATGCTGTAACTGTGA+AGG | + | chr4.1:7826890-7826909 | MS.gene70169:intron | 45.0% | |
| ! | AAGAAGCAAGAGTGTGAGCA+GGG | + | chr4.1:7829660-7829679 | MS.gene70169:CDS | 45.0% |
| ! | CTTTTGCTCTTGCACTTCTC+TGG | - | chr4.1:7827714-7827733 | None:intergenic | 45.0% |
| ! | GTTATGGCGGAGAAAGTCAT+CGG | + | chr4.1:7826108-7826127 | MS.gene70169:CDS | 45.0% |
| ! | TACTAGCTGTTTCAGCAGCT+TGG | - | chr4.1:7827979-7827998 | None:intergenic | 45.0% |
| AACGTGAACCGGGATCATGA+TGG | - | chr4.1:7827385-7827404 | None:intergenic | 50.0% | |
| AGATGCCAGGACTTTGCACA+AGG | + | chr4.1:7828828-7828847 | MS.gene70169:CDS | 50.0% | |
| CAGCAAGCCTTTCCATCTCA+AGG | - | chr4.1:7828303-7828322 | None:intergenic | 50.0% | |
| CCAAGCTACTCTATCACCAG+AGG | + | chr4.1:7826923-7826942 | MS.gene70169:CDS | 50.0% | |
| CCCCATCAAGGTGACTAACT+CGG | - | chr4.1:7827658-7827677 | None:intergenic | 50.0% | |
| CCGAGTTAGTCACCTTGATG+GGG | + | chr4.1:7827655-7827674 | MS.gene70169:CDS | 50.0% | |
| CCTAACTCCTAACGTGAACC+GGG | - | chr4.1:7827395-7827414 | None:intergenic | 50.0% | |
| CCTCTGGTGATAGAGTAGCT+TGG | - | chr4.1:7826926-7826945 | None:intergenic | 50.0% | |
| CGAATTAGCTGCAGCTCTGT+TGG | + | chr4.1:7827031-7827050 | MS.gene70169:CDS | 50.0% | |
| CGGCTTCCACTTTCTGTATC+TGG | - | chr4.1:7828331-7828350 | None:intergenic | 50.0% | |
| CTATTCGCTCCGATCTTCAG+AGG | + | chr4.1:7827852-7827871 | MS.gene70169:CDS | 50.0% | |
| CTCAAGTTCAGCAAGATGCC+AGG | + | chr4.1:7828815-7828834 | MS.gene70169:CDS | 50.0% | |
| CTCGGTCTGCACATTCTTCA+TGG | + | chr4.1:7826771-7826790 | MS.gene70169:intron | 50.0% | |
| CTGCTCACACTCTTGCTTCT+TGG | - | chr4.1:7829661-7829680 | None:intergenic | 50.0% | |
| GACCGAGTTAGTCACCTTGA+TGG | + | chr4.1:7827653-7827672 | MS.gene70169:CDS | 50.0% | |
| GAGACTTGATGCTGTGGAGA+AGG | + | chr4.1:7827874-7827893 | MS.gene70169:CDS | 50.0% | |
| GCTAGTCAACAGCAGCTTGT+CGG | - | chr4.1:7829091-7829110 | None:intergenic | 50.0% | |
| GCTGCAAGACAGAAGAACTC+AGG | + | chr4.1:7827623-7827642 | MS.gene70169:CDS | 50.0% | |
| GCTGCCTCATACACTCTTTG+AGG | - | chr4.1:7827682-7827701 | None:intergenic | 50.0% | |
| GGTGACTAACTCGGTCTTCA+AGG | - | chr4.1:7827649-7827668 | None:intergenic | 50.0% | |
| GTTGCTGAAGAAGCTGTCTC+AGG | + | chr4.1:7827095-7827114 | MS.gene70169:CDS | 50.0% | |
| TCAGAGGAGACTTGATGCTG+TGG | + | chr4.1:7827868-7827887 | MS.gene70169:CDS | 50.0% | |
| TCATGATCCCGGTTCACGTT+AGG | + | chr4.1:7827385-7827404 | MS.gene70169:intron | 50.0% | |
| ! | ACAGGAGGAGTTGGTTATGG+CGG | + | chr4.1:7826095-7826114 | MS.gene70169:CDS | 50.0% |
| ! | CAAGAAGCAAGAGTGTGAGC+AGG | + | chr4.1:7829659-7829678 | MS.gene70169:CDS | 50.0% |
| ! | GTAGTTTGGACTCTGGAAGC+AGG | + | chr4.1:7829164-7829183 | MS.gene70169:intron | 50.0% |
| ! | TGAGCTGCAATCTCGACTTG+AGG | + | chr4.1:7827916-7827935 | MS.gene70169:CDS | 50.0% |
| ! | TGGACAGGAGGAGTTGGTTA+TGG | + | chr4.1:7826092-7826111 | MS.gene70169:CDS | 50.0% |
| AGCAGCTTGTCGGTAGTCGA+CGG | - | chr4.1:7829081-7829100 | None:intergenic | 55.0% | |
| CCCGGTTCACGTTAGGAGTT+AGG | + | chr4.1:7827392-7827411 | MS.gene70169:intron | 55.0% | |
| CTGGGAGAAGGCTGAAAACG+AGG | + | chr4.1:7827574-7827593 | MS.gene70169:CDS | 55.0% | |
| GCAGGCTTAGATGTGACCTC+TGG | - | chr4.1:7826942-7826961 | None:intergenic | 55.0% | |
| GCTCTTGCACTTCTCTGGCT+TGG | - | chr4.1:7827709-7827728 | None:intergenic | 55.0% | |
| GGAGAAAAGTCCAGGCGAGA+CGG | + | chr4.1:7826129-7826148 | MS.gene70169:CDS | 55.0% | |
| ! | ACTCTTTGAGGGCCCCATCA+AGG | - | chr4.1:7827670-7827689 | None:intergenic | 55.0% |
| ! | GGGCCCTCAAAGAGTGTATG+AGG | + | chr4.1:7827675-7827694 | MS.gene70169:CDS | 55.0% |
| CCAGGCGAGACGGAGAGTTC+AGG | + | chr4.1:7826139-7826158 | MS.gene70169:CDS | 65.0% | |
| CCTGAACTCTCCGTCTCGCC+TGG | - | chr4.1:7826142-7826161 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 7826091 | 7829690 | 7826091 | ID=MS.gene70169 |
| chr4.1 | mRNA | 7826091 | 7829690 | 7826091 | ID=MS.gene70169.t1;Parent=MS.gene70169 |
| chr4.1 | exon | 7826091 | 7826201 | 7826091 | ID=MS.gene70169.t1.exon1;Parent=MS.gene70169.t1 |
| chr4.1 | CDS | 7826091 | 7826201 | 7826091 | ID=cds.MS.gene70169.t1;Parent=MS.gene70169.t1 |
| chr4.1 | exon | 7826912 | 7827116 | 7826912 | ID=MS.gene70169.t1.exon2;Parent=MS.gene70169.t1 |
| chr4.1 | CDS | 7826912 | 7827116 | 7826912 | ID=cds.MS.gene70169.t1;Parent=MS.gene70169.t1 |
| chr4.1 | exon | 7827573 | 7828882 | 7827573 | ID=MS.gene70169.t1.exon3;Parent=MS.gene70169.t1 |
| chr4.1 | CDS | 7827573 | 7828882 | 7827573 | ID=cds.MS.gene70169.t1;Parent=MS.gene70169.t1 |
| chr4.1 | exon | 7829379 | 7829690 | 7829379 | ID=MS.gene70169.t1.exon4;Parent=MS.gene70169.t1 |
| chr4.1 | CDS | 7829379 | 7829690 | 7829379 | ID=cds.MS.gene70169.t1;Parent=MS.gene70169.t1 |
| Gene Sequence |
| Protein sequence |
