Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70231.t1 | PNY16990.1 | 58.1 | 384 | 144 | 5 | 1 | 369 | 1 | 382 | 5.10E-107 | 397.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70231.t1 | Q9FFJ8 | 32.1 | 106 | 65 | 4 | 18 | 118 | 8 | 111 | 5.5e-09 | 63.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70231.t1 | A0A2K3PNX5 | 58.1 | 384 | 144 | 5 | 1 | 369 | 1 | 382 | 3.7e-107 | 397.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049435 | MS.gene70231 | 0.803146 | 4.01E-49 | -1.69E-46 |
| MS.gene049669 | MS.gene70231 | 0.817891 | 2.61E-52 | -1.69E-46 |
| MS.gene051147 | MS.gene70231 | 0.800695 | 1.28E-48 | -1.69E-46 |
| MS.gene052208 | MS.gene70231 | 0.800972 | 1.12E-48 | -1.69E-46 |
| MS.gene05414 | MS.gene70231 | 0.811872 | 5.63E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene70231 | 0.817832 | 2.69E-52 | -1.69E-46 |
| MS.gene054236 | MS.gene70231 | 0.806593 | 7.63E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene70231 | 0.819548 | 1.10E-52 | -1.69E-46 |
| MS.gene05604 | MS.gene70231 | 0.801953 | 7.06E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene70231 | 0.81758 | 3.06E-52 | -1.69E-46 |
| MS.gene056498 | MS.gene70231 | 0.821361 | 4.21E-53 | -1.69E-46 |
| MS.gene056873 | MS.gene70231 | 0.800097 | 1.69E-48 | -1.69E-46 |
| MS.gene057026 | MS.gene70231 | 0.800549 | 1.37E-48 | -1.69E-46 |
| MS.gene057755 | MS.gene70231 | 0.800717 | 1.26E-48 | -1.69E-46 |
| MS.gene059272 | MS.gene70231 | 0.820521 | 6.56E-53 | -1.69E-46 |
| MS.gene060167 | MS.gene70231 | 0.812459 | 4.19E-51 | -1.69E-46 |
| MS.gene061091 | MS.gene70231 | 0.814732 | 1.33E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70231.t1 | MTR_4g017485 | 90.455 | 220 | 21 | 0 | 149 | 368 | 1 | 220 | 8.63e-140 | 396 |
| MS.gene70231.t1 | MTR_7g105890 | 52.618 | 382 | 142 | 9 | 1 | 369 | 1 | 356 | 3.00e-127 | 370 |
| MS.gene70231.t1 | MTR_4g128540 | 50.949 | 369 | 153 | 7 | 1 | 366 | 1 | 344 | 1.40e-119 | 350 |
| MS.gene70231.t1 | MTR_0693s0050 | 61.250 | 240 | 87 | 5 | 1 | 237 | 1 | 237 | 3.89e-96 | 287 |
| MS.gene70231.t1 | MTR_4g128327 | 70.000 | 110 | 30 | 3 | 1 | 109 | 1 | 108 | 1.09e-46 | 155 |
| MS.gene70231.t1 | MTR_8g054100 | 36.842 | 152 | 88 | 4 | 1 | 148 | 11 | 158 | 4.39e-18 | 83.2 |
| MS.gene70231.t1 | MTR_1g016370 | 37.086 | 151 | 87 | 5 | 2 | 148 | 12 | 158 | 6.94e-17 | 80.9 |
| MS.gene70231.t1 | MTR_4g061370 | 37.086 | 151 | 87 | 5 | 2 | 148 | 1024 | 1170 | 1.50e-16 | 82.0 |
| MS.gene70231.t1 | MTR_1g073440 | 34.074 | 135 | 83 | 3 | 19 | 149 | 22 | 154 | 2.70e-16 | 79.3 |
| MS.gene70231.t1 | MTR_4g043620 | 22.881 | 354 | 201 | 10 | 14 | 363 | 18 | 303 | 1.64e-15 | 76.6 |
| MS.gene70231.t1 | MTR_2g435870 | 36.301 | 146 | 86 | 5 | 7 | 148 | 3 | 145 | 1.21e-14 | 73.9 |
| MS.gene70231.t1 | MTR_3g110155 | 33.929 | 168 | 101 | 6 | 3 | 166 | 13 | 174 | 1.32e-14 | 74.3 |
| MS.gene70231.t1 | MTR_8g006585 | 33.929 | 168 | 101 | 6 | 3 | 166 | 13 | 174 | 1.32e-14 | 74.3 |
| MS.gene70231.t1 | MTR_8g006695 | 33.929 | 168 | 101 | 6 | 3 | 166 | 13 | 174 | 1.32e-14 | 74.3 |
| MS.gene70231.t1 | MTR_8g069895 | 22.316 | 354 | 203 | 10 | 14 | 363 | 18 | 303 | 2.70e-14 | 73.2 |
| MS.gene70231.t1 | MTR_8g468830 | 22.792 | 351 | 206 | 10 | 23 | 369 | 25 | 314 | 4.51e-14 | 72.8 |
| MS.gene70231.t1 | MTR_2g021280 | 22.277 | 404 | 224 | 13 | 14 | 363 | 18 | 385 | 5.57e-14 | 73.2 |
| MS.gene70231.t1 | MTR_8g105430 | 33.088 | 136 | 82 | 5 | 23 | 153 | 50 | 181 | 9.85e-13 | 67.8 |
| MS.gene70231.t1 | MTR_1g080080 | 28.500 | 200 | 129 | 6 | 3 | 194 | 14 | 207 | 1.16e-12 | 68.6 |
| MS.gene70231.t1 | MTR_2g086350 | 28.500 | 200 | 129 | 6 | 3 | 194 | 14 | 207 | 1.20e-12 | 68.6 |
| MS.gene70231.t1 | MTR_2g018710 | 31.333 | 150 | 96 | 4 | 3 | 148 | 14 | 160 | 2.17e-12 | 67.8 |
| MS.gene70231.t1 | MTR_5g018260 | 23.836 | 365 | 201 | 14 | 14 | 363 | 18 | 320 | 3.17e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 80 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGACTAACAAACCTATTA+AGG | 0.181434 | 4.1:-8502849 | MS.gene70231:CDS |
| TTTGATATCTCAATCGAATT+TGG | 0.187362 | 4.1:-8502768 | MS.gene70231:CDS |
| GTAAAGTTCATTAGAATAAA+TGG | 0.218391 | 4.1:-8503614 | MS.gene70231:CDS |
| TAGGTTTGTTAGTCATGTTT+TGG | 0.255666 | 4.1:+8502855 | None:intergenic |
| GATGGTTACCAAAGGTCTTT+TGG | 0.275073 | 4.1:-8502657 | MS.gene70231:CDS |
| TTCAAAAGTAAACAAGTTAA+TGG | 0.276894 | 4.1:-8502719 | MS.gene70231:CDS |
| TCCACAGGTTGAACCAATTC+AGG | 0.302798 | 4.1:+8503157 | None:intergenic |
| CTTTGGAAGTTTCTGAAGTA+TGG | 0.306549 | 4.1:-8503473 | MS.gene70231:CDS |
| GGCCTCAAGTAATGATAAAA+TGG | 0.311908 | 4.1:-8503699 | MS.gene70231:CDS |
| GACGTGGATCATCATTTAAA+TGG | 0.341822 | 4.1:-8503592 | MS.gene70231:CDS |
| AGAGTTTGTTGCACCCTCTA+TGG | 0.342483 | 4.1:-8503182 | MS.gene70231:CDS |
| TTTCTGAAGTATGGTGAAAC+TGG | 0.344481 | 4.1:-8503464 | MS.gene70231:CDS |
| CAACTAAGCTTTCCTGTAAC+AGG | 0.356024 | 4.1:+8503428 | None:intergenic |
| ACCCTCTATGGATCCTGAAT+TGG | 0.374643 | 4.1:-8503170 | MS.gene70231:CDS |
| TTTGATGACAATTATGCAAC+TGG | 0.378059 | 4.1:-8503208 | MS.gene70231:CDS |
| TGAAGAAAGATTGGCGACTT+TGG | 0.383779 | 4.1:-8503490 | MS.gene70231:CDS |
| TTAGGATGGGATCCTGTTAC+AGG | 0.384207 | 4.1:-8503440 | MS.gene70231:CDS |
| TGATGGCCTCTTCAAAATCT+TGG | 0.394926 | 4.1:+8503558 | None:intergenic |
| ATCCTTCGATTGAGGAATAC+TGG | 0.409014 | 4.1:-8503240 | MS.gene70231:CDS |
| ATGATGATTCTAGGAAATCT+TGG | 0.417616 | 4.1:-8502550 | MS.gene70231:CDS |
| CAGCAATGACTGTTATAAAT+CGG | 0.423213 | 4.1:-8502679 | MS.gene70231:CDS |
| ATGACTAACAAACCTATTAA+GGG | 0.442092 | 4.1:-8502848 | MS.gene70231:CDS |
| CCCACCTCATTCATAAAATT+AGG | 0.455879 | 4.1:+8502989 | None:intergenic |
| AATCATCATTATGAGATTGA+TGG | 0.460371 | 4.1:-8503088 | MS.gene70231:CDS |
| CATGTGCCTACCCAAGGTCT+TGG | 0.473985 | 4.1:-8502959 | MS.gene70231:CDS |
| TAGATACTATGAAGAAAGAT+TGG | 0.475774 | 4.1:-8503499 | MS.gene70231:CDS |
| AAGTATGGTGAAACTGGATT+AGG | 0.490077 | 4.1:-8503458 | MS.gene70231:CDS |
| ATCTCAATCGAATTTGGCAT+TGG | 0.491767 | 4.1:-8502762 | MS.gene70231:CDS |
| GTGGAACATGTTAATGTTGA+GGG | 0.493344 | 4.1:-8503139 | MS.gene70231:CDS |
| CAAGACCTTGGGTAGGCACA+TGG | 0.495437 | 4.1:+8502960 | None:intergenic |
| GTGCCTACCCAAGGTCTTGG+AGG | 0.510178 | 4.1:-8502956 | MS.gene70231:CDS |
| TCAGGAGGTGCAACAAAGCT+AGG | 0.523054 | 4.1:-8502806 | MS.gene70231:CDS |
| TTGTGTACCTCCAAGACCTT+GGG | 0.536559 | 4.1:+8502949 | None:intergenic |
| GTCGGTAGATCCTTCGATTG+AGG | 0.536831 | 4.1:-8503248 | MS.gene70231:CDS |
| CTTGTGTACCTCCAAGACCT+TGG | 0.541010 | 4.1:+8502948 | None:intergenic |
| GCATTGGAGATAATGCAATC+TGG | 0.547246 | 4.1:-8502746 | MS.gene70231:CDS |
| ACTGAAGGTGCACAAGTGAC+TGG | 0.548205 | 4.1:-8502911 | MS.gene70231:CDS |
| GATTGAGAATGAAACAAGGC+GGG | 0.549521 | 4.1:-8502597 | MS.gene70231:CDS |
| AACAGTCATTGCTGTAGCAA+TGG | 0.551051 | 4.1:+8502688 | None:intergenic |
| GGTACCCATGTGCCTACCCA+AGG | 0.553541 | 4.1:-8502965 | MS.gene70231:CDS |
| AACATGTTAATGTTGAGGGG+GGG | 0.561184 | 4.1:-8503135 | MS.gene70231:CDS |
| AGCTTAGTTGTTCAGATGAG+TGG | 0.562434 | 4.1:-8503415 | MS.gene70231:CDS |
| CAGACGACATGCTTCTGAAG+TGG | 0.563314 | 4.1:-8503044 | MS.gene70231:CDS |
| TGGATCATCATTTAAATGGA+AGG | 0.564174 | 4.1:-8503588 | MS.gene70231:CDS |
| CAAGTGACTGGTCAAGGTGG+AGG | 0.567091 | 4.1:-8502899 | MS.gene70231:CDS |
| ATGGTGAAACTGGATTAGGA+TGG | 0.575573 | 4.1:-8503454 | MS.gene70231:CDS |
| CTCCAGTATTCCTCAATCGA+AGG | 0.577951 | 4.1:+8503238 | None:intergenic |
| TGGAACATGTTAATGTTGAG+GGG | 0.580928 | 4.1:-8503138 | MS.gene70231:CDS |
| TCAAGTAATGATAAAATGGA+AGG | 0.588534 | 4.1:-8503695 | MS.gene70231:CDS |
| AATGACTGTTATAAATCGGA+TGG | 0.589954 | 4.1:-8502675 | MS.gene70231:CDS |
| TGGTGAAACTGGATTAGGAT+GGG | 0.590498 | 4.1:-8503453 | MS.gene70231:CDS |
| TCAACATTAACATGTTCCAC+AGG | 0.594898 | 4.1:+8503142 | None:intergenic |
| TCCTGAATTGGTTCAACCTG+TGG | 0.597923 | 4.1:-8503158 | MS.gene70231:CDS |
| TTCATTAGAATAAATGGACG+TGG | 0.598170 | 4.1:-8503608 | MS.gene70231:CDS |
| AATCGTAAAAGAAAACGCTC+AGG | 0.598724 | 4.1:-8502824 | MS.gene70231:CDS |
| TAGTTGTTCAGATGAGTGGT+GGG | 0.602613 | 4.1:-8503411 | MS.gene70231:CDS |
| TTAGTTGTTCAGATGAGTGG+TGG | 0.603094 | 4.1:-8503412 | MS.gene70231:CDS |
| TGGAAAAGGGTAGTGAATTG+TGG | 0.603778 | 4.1:-8502637 | MS.gene70231:CDS |
| CGTAAAAGAAAACGCTCAGG+AGG | 0.613684 | 4.1:-8502821 | MS.gene70231:CDS |
| AACCAATTCAGGATCCATAG+AGG | 0.615080 | 4.1:+8503168 | None:intergenic |
| GGTGCACAAGTGACTGGTCA+AGG | 0.615876 | 4.1:-8502905 | MS.gene70231:CDS |
| GCACCTTCAGTATATTCACT+AGG | 0.618197 | 4.1:+8502923 | None:intergenic |
| TGACTAACAAACCTATTAAG+GGG | 0.621684 | 4.1:-8502847 | MS.gene70231:CDS |
| CATCATTATGAGATTGATGG+AGG | 0.622802 | 4.1:-8503085 | MS.gene70231:CDS |
| AAGACCTTGGGTAGGCACAT+GGG | 0.624761 | 4.1:+8502961 | None:intergenic |
| GGAACATGTTAATGTTGAGG+GGG | 0.640316 | 4.1:-8503137 | MS.gene70231:CDS |
| GAACATGTTAATGTTGAGGG+GGG | 0.642314 | 4.1:-8503136 | MS.gene70231:CDS |
| ACCAATTCAGGATCCATAGA+GGG | 0.643334 | 4.1:+8503169 | None:intergenic |
| TTGATGACAATTATGCAACT+GGG | 0.647938 | 4.1:-8503207 | MS.gene70231:CDS |
| TGTGGAACATGTTAATGTTG+AGG | 0.649163 | 4.1:-8503140 | MS.gene70231:CDS |
| GTACCTAGTGAATATACTGA+AGG | 0.660409 | 4.1:-8502926 | MS.gene70231:CDS |
| TTGGAGATAATGCAATCTGG+TGG | 0.662967 | 4.1:-8502743 | MS.gene70231:CDS |
| ATAAATCGGATGGTTACCAA+AGG | 0.663581 | 4.1:-8502665 | MS.gene70231:CDS |
| GCACAAGTGACTGGTCAAGG+TGG | 0.681395 | 4.1:-8502902 | MS.gene70231:CDS |
| GTTTGATTGAGAATGAAACA+AGG | 0.697331 | 4.1:-8502601 | MS.gene70231:CDS |
| GTACCTCCAAGACCTTGGGT+AGG | 0.709359 | 4.1:+8502953 | None:intergenic |
| TGATTGAGAATGAAACAAGG+CGG | 0.710780 | 4.1:-8502598 | MS.gene70231:CDS |
| TGATGACAATTATGCAACTG+GGG | 0.713435 | 4.1:-8503206 | MS.gene70231:CDS |
| GGAGGTGCAACAAAGCTAGG+TGG | 0.721408 | 4.1:-8502803 | MS.gene70231:CDS |
| TTGTCTGTAGGAGAAACCTG+AGG | 0.744782 | 4.1:-8503290 | MS.gene70231:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTTATATAAGATCTGA+AGG | - | chr4.1:8502890-8502909 | MS.gene70231:CDS | 15.0% |
| !! | TAAAAAATATCGTAATAAGT+CGG | - | chr4.1:8502955-8502974 | MS.gene70231:CDS | 15.0% |
| !!! | TTATTCTTTAAAGTTTTTGA+GGG | + | chr4.1:8502700-8502719 | None:intergenic | 15.0% |
| !! | GTAAAGTTCATTAGAATAAA+TGG | - | chr4.1:8502607-8502626 | MS.gene70231:CDS | 20.0% |
| !! | TTCAAAAGTAAACAAGTTAA+TGG | - | chr4.1:8503502-8503521 | MS.gene70231:CDS | 20.0% |
| !!! | CAAAATTTCTTTTCATATTC+AGG | + | chr4.1:8502577-8502596 | None:intergenic | 20.0% |
| !!! | CTTATTCTTTAAAGTTTTTG+AGG | + | chr4.1:8502701-8502720 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGGGAATGTAAAT+AGG | + | chr4.1:8503701-8503720 | None:intergenic | 20.0% |
| ! | AATCATCATTATGAGATTGA+TGG | - | chr4.1:8503133-8503152 | MS.gene70231:CDS | 25.0% |
| ! | ATGACTAACAAACCTATTAA+GGG | - | chr4.1:8503373-8503392 | MS.gene70231:intron | 25.0% |
| ! | TAGATACTATGAAGAAAGAT+TGG | - | chr4.1:8502722-8502741 | MS.gene70231:CDS | 25.0% |
| ! | TCAAGTAATGATAAAATGGA+AGG | - | chr4.1:8502526-8502545 | MS.gene70231:CDS | 25.0% |
| ! | TTTGATATCTCAATCGAATT+TGG | - | chr4.1:8503453-8503472 | MS.gene70231:CDS | 25.0% |
| !! | TTCCATTTTATCATTACTTG+AGG | + | chr4.1:8502527-8502546 | None:intergenic | 25.0% |
| !! | TTTGCCTAATTTTATGAATG+AGG | - | chr4.1:8503228-8503247 | MS.gene70231:CDS | 25.0% |
| AATGACTGTTATAAATCGGA+TGG | - | chr4.1:8503546-8503565 | MS.gene70231:CDS | 30.0% | |
| ATCAACTTATCTTTGTCTGT+AGG | - | chr4.1:8502919-8502938 | MS.gene70231:CDS | 30.0% | |
| CAGCAATGACTGTTATAAAT+CGG | - | chr4.1:8503542-8503561 | MS.gene70231:CDS | 30.0% | |
| CATGACTAACAAACCTATTA+AGG | - | chr4.1:8503372-8503391 | MS.gene70231:intron | 30.0% | |
| GTTTGATTGAGAATGAAACA+AGG | - | chr4.1:8503620-8503639 | MS.gene70231:CDS | 30.0% | |
| TGACTAACAAACCTATTAAG+GGG | - | chr4.1:8503374-8503393 | MS.gene70231:intron | 30.0% | |
| TGGATCATCATTTAAATGGA+AGG | - | chr4.1:8502633-8502652 | MS.gene70231:CDS | 30.0% | |
| TTCATTAGAATAAATGGACG+TGG | - | chr4.1:8502613-8502632 | MS.gene70231:CDS | 30.0% | |
| ! | ATGATGATTCTAGGAAATCT+TGG | - | chr4.1:8503671-8503690 | MS.gene70231:CDS | 30.0% |
| ! | CCTAATTTTATGAATGAGGT+GGG | - | chr4.1:8503232-8503251 | MS.gene70231:CDS | 30.0% |
| ! | TTGATGACAATTATGCAACT+GGG | - | chr4.1:8503014-8503033 | MS.gene70231:CDS | 30.0% |
| ! | TTTGATGACAATTATGCAAC+TGG | - | chr4.1:8503013-8503032 | MS.gene70231:CDS | 30.0% |
| !! | AAGTTTTTGAGGGAACTTTT+CGG | + | chr4.1:8502690-8502709 | None:intergenic | 30.0% |
| !!! | AGGTTTGTTAGTCATGTTTT+GGG | + | chr4.1:8503368-8503387 | None:intergenic | 30.0% |
| !!! | TAGGTTTGTTAGTCATGTTT+TGG | + | chr4.1:8503369-8503388 | None:intergenic | 30.0% |
| !!! | TTACGATATTTTTTAGCCTC+AGG | + | chr4.1:8502950-8502969 | None:intergenic | 30.0% |
| AAGTATGGTGAAACTGGATT+AGG | - | chr4.1:8502763-8502782 | MS.gene70231:CDS | 35.0% | |
| AATCGTAAAAGAAAACGCTC+AGG | - | chr4.1:8503397-8503416 | MS.gene70231:CDS | 35.0% | |
| ATAAATCGGATGGTTACCAA+AGG | - | chr4.1:8503556-8503575 | MS.gene70231:CDS | 35.0% | |
| ATCTCAATCGAATTTGGCAT+TGG | - | chr4.1:8503459-8503478 | MS.gene70231:CDS | 35.0% | |
| CATCATTATGAGATTGATGG+AGG | - | chr4.1:8503136-8503155 | MS.gene70231:CDS | 35.0% | |
| CCCACCTCATTCATAAAATT+AGG | + | chr4.1:8503235-8503254 | None:intergenic | 35.0% | |
| GACGTGGATCATCATTTAAA+TGG | - | chr4.1:8502629-8502648 | MS.gene70231:CDS | 35.0% | |
| GGCCTCAAGTAATGATAAAA+TGG | - | chr4.1:8502522-8502541 | MS.gene70231:CDS | 35.0% | |
| GTACCTAGTGAATATACTGA+AGG | - | chr4.1:8503295-8503314 | MS.gene70231:intron | 35.0% | |
| GTGGAACATGTTAATGTTGA+GGG | - | chr4.1:8503082-8503101 | MS.gene70231:CDS | 35.0% | |
| TCAACATTAACATGTTCCAC+AGG | + | chr4.1:8503082-8503101 | None:intergenic | 35.0% | |
| TGATGACAATTATGCAACTG+GGG | - | chr4.1:8503015-8503034 | MS.gene70231:CDS | 35.0% | |
| TGATTGAGAATGAAACAAGG+CGG | - | chr4.1:8503623-8503642 | MS.gene70231:CDS | 35.0% | |
| TGGAACATGTTAATGTTGAG+GGG | - | chr4.1:8503083-8503102 | MS.gene70231:CDS | 35.0% | |
| TGTGGAACATGTTAATGTTG+AGG | - | chr4.1:8503081-8503100 | MS.gene70231:CDS | 35.0% | |
| ! | AATTTTATGAATGAGGTGGG+TGG | - | chr4.1:8503235-8503254 | MS.gene70231:CDS | 35.0% |
| ! | CGGGAGATTTTTCTAAACAT+GGG | - | chr4.1:8503643-8503662 | MS.gene70231:CDS | 35.0% |
| ! | CTTTTACGATTCCCCTTAAT+AGG | + | chr4.1:8503388-8503407 | None:intergenic | 35.0% |
| ! | GCCTAATTTTATGAATGAGG+TGG | - | chr4.1:8503231-8503250 | MS.gene70231:CDS | 35.0% |
| ! | GGAGATTTTTCTAAACATGG+GGG | - | chr4.1:8503645-8503664 | MS.gene70231:CDS | 35.0% |
| ! | GGGAGATTTTTCTAAACATG+GGG | - | chr4.1:8503644-8503663 | MS.gene70231:CDS | 35.0% |
| ! | GTGGTGGGATAGAAAAATTA+AGG | - | chr4.1:8502825-8502844 | MS.gene70231:CDS | 35.0% |
| !! | ACCAAAGGTCTTTTGGAAAA+GGG | - | chr4.1:8503571-8503590 | MS.gene70231:CDS | 35.0% |
| !! | CTTTGGAAGTTTCTGAAGTA+TGG | - | chr4.1:8502748-8502767 | MS.gene70231:CDS | 35.0% |
| !! | GATTCACCAAGATTTTGAAG+AGG | - | chr4.1:8502657-8502676 | MS.gene70231:CDS | 35.0% |
| !! | TACCAAAGGTCTTTTGGAAA+AGG | - | chr4.1:8503570-8503589 | MS.gene70231:CDS | 35.0% |
| !! | TTTCTGAAGTATGGTGAAAC+TGG | - | chr4.1:8502757-8502776 | MS.gene70231:CDS | 35.0% |
| !!! | TGGAAGGACTCAGTTTTAAA+TGG | - | chr4.1:8502542-8502561 | MS.gene70231:CDS | 35.0% |
| AACAGTCATTGCTGTAGCAA+TGG | + | chr4.1:8503536-8503555 | None:intergenic | 40.0% | |
| AACATGTTAATGTTGAGGGG+GGG | - | chr4.1:8503086-8503105 | MS.gene70231:CDS | 40.0% | |
| AACCAATTCAGGATCCATAG+AGG | + | chr4.1:8503056-8503075 | None:intergenic | 40.0% | |
| ACCAATTCAGGATCCATAGA+GGG | + | chr4.1:8503055-8503074 | None:intergenic | 40.0% | |
| AGCTTAGTTGTTCAGATGAG+TGG | - | chr4.1:8502806-8502825 | MS.gene70231:CDS | 40.0% | |
| ATCCTTCGATTGAGGAATAC+TGG | - | chr4.1:8502981-8503000 | MS.gene70231:CDS | 40.0% | |
| CAACTAAGCTTTCCTGTAAC+AGG | + | chr4.1:8502796-8502815 | None:intergenic | 40.0% | |
| GAACATGTTAATGTTGAGGG+GGG | - | chr4.1:8503085-8503104 | MS.gene70231:CDS | 40.0% | |
| GATTGAGAATGAAACAAGGC+GGG | - | chr4.1:8503624-8503643 | MS.gene70231:CDS | 40.0% | |
| GCACCTTCAGTATATTCACT+AGG | + | chr4.1:8503301-8503320 | None:intergenic | 40.0% | |
| GCATTGGAGATAATGCAATC+TGG | - | chr4.1:8503475-8503494 | MS.gene70231:CDS | 40.0% | |
| GGAACATGTTAATGTTGAGG+GGG | - | chr4.1:8503084-8503103 | MS.gene70231:CDS | 40.0% | |
| TAGTTGTTCAGATGAGTGGT+GGG | - | chr4.1:8502810-8502829 | MS.gene70231:CDS | 40.0% | |
| TGAAGAAAGATTGGCGACTT+TGG | - | chr4.1:8502731-8502750 | MS.gene70231:CDS | 40.0% | |
| TGATGGCCTCTTCAAAATCT+TGG | + | chr4.1:8502666-8502685 | None:intergenic | 40.0% | |
| TGGAAAAGGGTAGTGAATTG+TGG | - | chr4.1:8503584-8503603 | MS.gene70231:CDS | 40.0% | |
| TTAGTTGTTCAGATGAGTGG+TGG | - | chr4.1:8502809-8502828 | MS.gene70231:CDS | 40.0% | |
| TTGGAGATAATGCAATCTGG+TGG | - | chr4.1:8503478-8503497 | MS.gene70231:CDS | 40.0% | |
| ! | ACCCTTTTCCAAAAGACCTT+TGG | + | chr4.1:8503575-8503594 | None:intergenic | 40.0% |
| ! | ATGGTGAAACTGGATTAGGA+TGG | - | chr4.1:8502767-8502786 | MS.gene70231:CDS | 40.0% |
| ! | GATGGTTACCAAAGGTCTTT+TGG | - | chr4.1:8503564-8503583 | MS.gene70231:CDS | 40.0% |
| ! | GCGGGAGATTTTTCTAAACA+TGG | - | chr4.1:8503642-8503661 | MS.gene70231:CDS | 40.0% |
| ! | TGGTGAAACTGGATTAGGAT+GGG | - | chr4.1:8502768-8502787 | MS.gene70231:CDS | 40.0% |
| ACATGTTAATGTTGAGGGGG+GGG | - | chr4.1:8503087-8503106 | MS.gene70231:CDS | 45.0% | |
| ACCCTCTATGGATCCTGAAT+TGG | - | chr4.1:8503051-8503070 | MS.gene70231:CDS | 45.0% | |
| CGTAAAAGAAAACGCTCAGG+AGG | - | chr4.1:8503400-8503419 | MS.gene70231:CDS | 45.0% | |
| CTCCAGTATTCCTCAATCGA+AGG | + | chr4.1:8502986-8503005 | None:intergenic | 45.0% | |
| TTAGGATGGGATCCTGTTAC+AGG | - | chr4.1:8502781-8502800 | MS.gene70231:CDS | 45.0% | |
| TTGTCTGTAGGAGAAACCTG+AGG | - | chr4.1:8502931-8502950 | MS.gene70231:CDS | 45.0% | |
| TTGTGTACCTCCAAGACCTT+GGG | + | chr4.1:8503275-8503294 | None:intergenic | 45.0% | |
| ! | TCCACAGGTTGAACCAATTC+AGG | + | chr4.1:8503067-8503086 | None:intergenic | 45.0% |
| ! | TCCTGAATTGGTTCAACCTG+TGG | - | chr4.1:8503063-8503082 | MS.gene70231:CDS | 45.0% |
| ! | TGAGGGAACTTTTCGGTTGA+TGG | + | chr4.1:8502683-8502702 | None:intergenic | 45.0% |
| ! | TGGGGGATGATGATGATTCT+AGG | - | chr4.1:8503662-8503681 | MS.gene70231:CDS | 45.0% |
| !! | AGAGTTTGTTGCACCCTCTA+TGG | - | chr4.1:8503039-8503058 | MS.gene70231:CDS | 45.0% |
| AAGACCTTGGGTAGGCACAT+GGG | + | chr4.1:8503263-8503282 | None:intergenic | 50.0% | |
| CTTGTGTACCTCCAAGACCT+TGG | + | chr4.1:8503276-8503295 | None:intergenic | 50.0% | |
| GGGGGATAAAGAAAGTGGTG+GGG | - | chr4.1:8503105-8503124 | MS.gene70231:CDS | 50.0% | |
| GGGGGGATAAAGAAAGTGGT+GGG | - | chr4.1:8503104-8503123 | MS.gene70231:CDS | 50.0% | |
| GTCGGTAGATCCTTCGATTG+AGG | - | chr4.1:8502973-8502992 | MS.gene70231:CDS | 50.0% | |
| ! | ACTGAAGGTGCACAAGTGAC+TGG | - | chr4.1:8503310-8503329 | MS.gene70231:intron | 50.0% |
| ! | CAGACGACATGCTTCTGAAG+TGG | - | chr4.1:8503177-8503196 | MS.gene70231:CDS | 50.0% |
| ! | TCAGGAGGTGCAACAAAGCT+AGG | - | chr4.1:8503415-8503434 | MS.gene70231:CDS | 50.0% |
| CAAGACCTTGGGTAGGCACA+TGG | + | chr4.1:8503264-8503283 | None:intergenic | 55.0% | |
| CATGTGCCTACCCAAGGTCT+TGG | - | chr4.1:8503262-8503281 | MS.gene70231:CDS | 55.0% | |
| GAGGGGGGGGATAAAGAAAG+TGG | - | chr4.1:8503100-8503119 | MS.gene70231:CDS | 55.0% | |
| GGGGGGGATAAAGAAAGTGG+TGG | - | chr4.1:8503103-8503122 | MS.gene70231:CDS | 55.0% | |
| GTACCTCCAAGACCTTGGGT+AGG | + | chr4.1:8503271-8503290 | None:intergenic | 55.0% | |
| ! | CAAGTGACTGGTCAAGGTGG+AGG | - | chr4.1:8503322-8503341 | MS.gene70231:intron | 55.0% |
| ! | GCACAAGTGACTGGTCAAGG+TGG | - | chr4.1:8503319-8503338 | MS.gene70231:intron | 55.0% |
| ! | GGAGGTGCAACAAAGCTAGG+TGG | - | chr4.1:8503418-8503437 | MS.gene70231:CDS | 55.0% |
| ! | GGTGCACAAGTGACTGGTCA+AGG | - | chr4.1:8503316-8503335 | MS.gene70231:intron | 55.0% |
| GGTACCCATGTGCCTACCCA+AGG | - | chr4.1:8503256-8503275 | MS.gene70231:CDS | 60.0% | |
| GTGCCTACCCAAGGTCTTGG+AGG | - | chr4.1:8503265-8503284 | MS.gene70231:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 8502520 | 8503723 | 8502520 | ID=MS.gene70231 |
| chr4.1 | mRNA | 8502520 | 8503723 | 8502520 | ID=MS.gene70231.t1;Parent=MS.gene70231 |
| chr4.1 | exon | 8503397 | 8503723 | 8503397 | ID=MS.gene70231.t1.exon1;Parent=MS.gene70231.t1 |
| chr4.1 | CDS | 8503397 | 8503723 | 8503397 | ID=cds.MS.gene70231.t1;Parent=MS.gene70231.t1 |
| chr4.1 | exon | 8502520 | 8503302 | 8502520 | ID=MS.gene70231.t1.exon2;Parent=MS.gene70231.t1 |
| chr4.1 | CDS | 8502520 | 8503302 | 8502520 | ID=cds.MS.gene70231.t1;Parent=MS.gene70231.t1 |
| Gene Sequence |
| Protein sequence |
