Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70526.t1 | XP_013461117.1 | 93.4 | 411 | 27 | 0 | 1 | 411 | 1 | 411 | 1.10E-227 | 798.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70526.t1 | Q67ZU1 | 44.3 | 415 | 218 | 5 | 1 | 408 | 6 | 414 | 6.4e-99 | 362.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70526.t1 | A0A072V0B6 | 93.4 | 411 | 27 | 0 | 1 | 411 | 1 | 411 | 8.0e-228 | 798.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene70526 | 0.809896 | 1.51E-50 | -1.69E-46 |
| MS.gene050170 | MS.gene70526 | 0.818621 | 1.78E-52 | -1.69E-46 |
| MS.gene050323 | MS.gene70526 | 0.813514 | 2.46E-51 | -1.69E-46 |
| MS.gene050496 | MS.gene70526 | 0.80207 | 6.68E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene70526 | 0.810687 | 1.02E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene70526 | 0.824738 | 6.86E-54 | -1.69E-46 |
| MS.gene050871 | MS.gene70526 | 0.825838 | 3.77E-54 | -1.69E-46 |
| MS.gene052506 | MS.gene70526 | 0.801326 | 9.49E-49 | -1.69E-46 |
| MS.gene052822 | MS.gene70526 | 0.810461 | 1.14E-50 | -1.69E-46 |
| MS.gene053479 | MS.gene70526 | 0.826086 | 3.29E-54 | -1.69E-46 |
| MS.gene053574 | MS.gene70526 | 0.801838 | 7.45E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene70526 | 0.817046 | 4.04E-52 | -1.69E-46 |
| MS.gene055502 | MS.gene70526 | 0.800965 | 1.13E-48 | -1.69E-46 |
| MS.gene055577 | MS.gene70526 | 0.805973 | 1.03E-49 | -1.69E-46 |
| MS.gene055750 | MS.gene70526 | 0.809463 | 1.87E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene70526 | 0.807308 | 5.39E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene70526 | 0.814777 | 1.30E-51 | -1.69E-46 |
| MS.gene059023 | MS.gene70526 | 0.803708 | 3.06E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70526.t1 | MTR_3g081060 | 93.431 | 411 | 27 | 0 | 1 | 411 | 1 | 411 | 0.0 | 806 |
| MS.gene70526.t1 | MTR_3g081040 | 79.188 | 394 | 79 | 2 | 18 | 411 | 16 | 406 | 0.0 | 660 |
| MS.gene70526.t1 | MTR_7g081050 | 76.108 | 406 | 93 | 3 | 6 | 411 | 4 | 405 | 0.0 | 656 |
| MS.gene70526.t1 | MTR_3g080980 | 68.966 | 406 | 123 | 3 | 6 | 411 | 3 | 405 | 0.0 | 581 |
| MS.gene70526.t1 | MTR_7g081060 | 63.184 | 402 | 144 | 4 | 8 | 409 | 6 | 403 | 0.0 | 527 |
| MS.gene70526.t1 | MTR_6g033965 | 63.861 | 404 | 141 | 4 | 8 | 411 | 6 | 404 | 0.0 | 523 |
| MS.gene70526.t1 | MTR_6g033975 | 62.129 | 404 | 147 | 5 | 8 | 411 | 6 | 403 | 6.00e-177 | 499 |
| MS.gene70526.t1 | MTR_5g084950 | 51.990 | 402 | 185 | 5 | 9 | 409 | 6 | 400 | 1.16e-151 | 435 |
| MS.gene70526.t1 | MTR_7g029365 | 46.845 | 412 | 214 | 3 | 1 | 409 | 1 | 410 | 2.64e-131 | 384 |
| MS.gene70526.t1 | MTR_6g023740 | 43.243 | 407 | 222 | 4 | 7 | 408 | 9 | 411 | 2.70e-120 | 356 |
| MS.gene70526.t1 | MTR_6g023715 | 43.603 | 383 | 191 | 6 | 31 | 408 | 30 | 392 | 1.08e-112 | 336 |
| MS.gene70526.t1 | MTR_6g023750 | 45.299 | 351 | 186 | 3 | 63 | 408 | 5 | 354 | 1.30e-108 | 324 |
| MS.gene70526.t1 | MTR_1g107330 | 40.360 | 389 | 216 | 6 | 30 | 410 | 18 | 398 | 2.71e-100 | 304 |
| MS.gene70526.t1 | MTR_7g029365 | 48.667 | 300 | 147 | 4 | 8 | 304 | 11 | 306 | 1.71e-90 | 276 |
| MS.gene70526.t1 | MTR_0595s0010 | 50.485 | 206 | 93 | 3 | 32 | 232 | 35 | 236 | 4.92e-68 | 219 |
| MS.gene70526.t1 | MTR_1g107330 | 39.929 | 283 | 160 | 4 | 30 | 304 | 18 | 298 | 1.92e-66 | 215 |
| MS.gene70526.t1 | MTR_5g006650 | 51.765 | 170 | 69 | 4 | 69 | 233 | 44 | 205 | 1.07e-47 | 163 |
| MS.gene70526.t1 | MTR_3g081000 | 48.039 | 102 | 19 | 2 | 304 | 405 | 5 | 72 | 2.30e-20 | 85.9 |
| MS.gene70526.t1 | MTR_6g085070 | 34.959 | 123 | 74 | 3 | 48 | 170 | 160 | 276 | 1.66e-13 | 72.4 |
| MS.gene70526.t1 | MTR_6g085070 | 35.246 | 122 | 73 | 3 | 48 | 169 | 292 | 407 | 2.68e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70526.t1 | AT5G14180 | 44.231 | 416 | 219 | 5 | 1 | 409 | 6 | 415 | 4.09e-126 | 371 |
| MS.gene70526.t1 | AT2G15230 | 43.003 | 393 | 198 | 8 | 27 | 410 | 11 | 386 | 3.10e-107 | 322 |
| MS.gene70526.t1 | AT5G14180 | 46.129 | 310 | 165 | 2 | 100 | 409 | 8 | 315 | 1.00e-100 | 302 |
| MS.gene70526.t1 | AT5G14180 | 46.405 | 306 | 162 | 2 | 104 | 409 | 3 | 306 | 2.33e-100 | 301 |
| MS.gene70526.t1 | AT5G14180 | 43.087 | 311 | 165 | 4 | 1 | 304 | 6 | 311 | 9.04e-88 | 269 |
| MS.gene70526.t1 | AT5G14180 | 41.786 | 280 | 151 | 4 | 1 | 273 | 6 | 280 | 1.36e-71 | 227 |
Find 75 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGAATTCACTAGGGATTT+TGG | 0.196713 | 3.1:-67360181 | None:intergenic |
| GAAGAATTTATGCAGCAATT+TGG | 0.255763 | 3.1:-67359547 | None:intergenic |
| GTCCTCCATAGCTGAGAAAA+AGG | 0.287005 | 3.1:-67360203 | None:intergenic |
| ATAAATCCCAATGATTCTTC+TGG | 0.296588 | 3.1:-67358225 | None:intergenic |
| TAATGTAACAGGATATATAT+TGG | 0.314959 | 3.1:+67359165 | MS.gene70526:intron |
| TCTAAAGTACCTGTGAATAA+TGG | 0.370637 | 3.1:-67359412 | None:intergenic |
| ATTCTAATGAGCAGGGATAT+TGG | 0.385779 | 3.1:+67359328 | MS.gene70526:intron |
| TTCTTTGTTGCGGTTGGTTG+AGG | 0.386565 | 3.1:-67359598 | None:intergenic |
| CAATATGTGTACAACTATAC+TGG | 0.390762 | 3.1:+67358544 | MS.gene70526:CDS |
| CAATTCTCCAGAAGAATCAT+TGG | 0.404888 | 3.1:+67358218 | MS.gene70526:CDS |
| GCAGATACCATCATATTCAT+TGG | 0.407985 | 3.1:-67357624 | None:intergenic |
| ATAAGAATTAACCATGTCAT+TGG | 0.413273 | 3.1:-67358328 | None:intergenic |
| TTGAGGTTCATGATCAAGAT+AGG | 0.416846 | 3.1:-67359581 | None:intergenic |
| GCACAAAATATACTACACTA+TGG | 0.422402 | 3.1:+67360129 | MS.gene70526:CDS |
| ATTTGAGTCATATGAGCAAT+TGG | 0.424879 | 3.1:-67358764 | None:intergenic |
| CCATCATATTCATTGGTAAC+CGG | 0.447908 | 3.1:-67357617 | None:intergenic |
| TCCCTATCGGGATCCTCTGC+AGG | 0.448688 | 3.1:-67357892 | None:intergenic |
| ATTGGAATAAAACTTCTAGA+TGG | 0.460556 | 3.1:+67359346 | MS.gene70526:CDS |
| TTCTTACCAGACCTCCCTAT+CGG | 0.460743 | 3.1:-67357905 | None:intergenic |
| CAACCGTGTGGTATTGTTCA+AGG | 0.466765 | 3.1:+67360296 | MS.gene70526:CDS |
| ATCAAATTCTTTGTTGCGGT+TGG | 0.468295 | 3.1:-67359604 | None:intergenic |
| AGGCTTATTGGGATTGGTCA+TGG | 0.470187 | 3.1:+67358485 | MS.gene70526:intron |
| GCATTATGTCGGTCATTCTC+AGG | 0.472282 | 3.1:+67358576 | MS.gene70526:CDS |
| TTGTATAGGCTTATTGGGAT+TGG | 0.474063 | 3.1:+67358479 | MS.gene70526:intron |
| TGGTTATGATCTACCTGCTT+CGG | 0.479985 | 3.1:+67358519 | MS.gene70526:CDS |
| AATTCTCCAGAAGAATCATT+GGG | 0.482219 | 3.1:+67358219 | MS.gene70526:CDS |
| TAAGAATTAACCATGTCATT+GGG | 0.483284 | 3.1:-67358327 | None:intergenic |
| TAACAGGATATATATTGGTT+AGG | 0.485514 | 3.1:+67359170 | MS.gene70526:intron |
| CTGTGAATAATGGTAATAAA+CGG | 0.486883 | 3.1:-67359402 | None:intergenic |
| ATTTGAGCAGTGATCAGATC+AGG | 0.490676 | 3.1:+67360075 | MS.gene70526:intron |
| TTATACGTGCGAAGAACATA+AGG | 0.497284 | 3.1:+67357670 | MS.gene70526:CDS |
| TCTTACCAGACCTCCCTATC+GGG | 0.501642 | 3.1:-67357904 | None:intergenic |
| ACGCATGTGGAACGAATTCA+CGG | 0.501834 | 3.1:-67359196 | None:intergenic |
| TACACATATTGTGCCGAAGC+AGG | 0.503518 | 3.1:-67358532 | None:intergenic |
| GGCTTATTGGGATTGGTCAT+GGG | 0.506432 | 3.1:+67358486 | MS.gene70526:intron |
| TAAACGGTTTGTGCAGTTGA+GGG | 0.507348 | 3.1:-67359386 | None:intergenic |
| TAGCATCATGGTCATTATTG+AGG | 0.509250 | 3.1:-67360272 | None:intergenic |
| AGACCATGTTGGATTAATAC+AGG | 0.511410 | 3.1:-67357941 | None:intergenic |
| TATTTATTCTCTTACGCATG+TGG | 0.511783 | 3.1:-67359209 | None:intergenic |
| AGGATCCCGATAGGGAGGTC+TGG | 0.512633 | 3.1:+67357899 | MS.gene70526:CDS |
| ACCTAGGTTACAACAGATGA+TGG | 0.517461 | 3.1:+67357857 | MS.gene70526:intron |
| TATACTACACTATGGACAAA+GGG | 0.522679 | 3.1:+67360137 | MS.gene70526:CDS |
| CCGGTTACCAATGAATATGA+TGG | 0.532885 | 3.1:+67357617 | MS.gene70526:CDS |
| TTTGATGTGTGGCTTATCAA+TGG | 0.534449 | 3.1:+67358264 | MS.gene70526:CDS |
| TTGCTGCATAAATTCTTCAA+AGG | 0.534860 | 3.1:+67359552 | MS.gene70526:CDS |
| TGGTCATGGGATGAATTAGC+TGG | 0.535170 | 3.1:+67358499 | MS.gene70526:CDS |
| CGTTTATTACCATTATTCAC+AGG | 0.536396 | 3.1:+67359403 | MS.gene70526:CDS |
| TGGTTATGTCATATGTTGGA+GGG | 0.541900 | 3.1:-67360161 | None:intergenic |
| ATGGATCAAATTCTTTGTTG+CGG | 0.548247 | 3.1:-67359608 | None:intergenic |
| ATAAACGGTTTGTGCAGTTG+AGG | 0.551432 | 3.1:-67359387 | None:intergenic |
| GCTTCTGAATGTATTAAGAT+CGG | 0.561603 | 3.1:+67358727 | MS.gene70526:CDS |
| TATTTCAGGATGCTGCCGTA+TGG | 0.566764 | 3.1:+67358190 | MS.gene70526:intron |
| ATATACTACACTATGGACAA+AGG | 0.568705 | 3.1:+67360136 | MS.gene70526:CDS |
| GGGACTTAGTGATGCGTGGT+TGG | 0.569135 | 3.1:-67358307 | None:intergenic |
| GCCTGCAGAGGATCCCGATA+GGG | 0.576693 | 3.1:+67357891 | MS.gene70526:CDS |
| TTGGTTATGTCATATGTTGG+AGG | 0.577261 | 3.1:-67360162 | None:intergenic |
| AAAACACTTCACATAAGCAA+TGG | 0.577303 | 3.1:+67357578 | MS.gene70526:CDS |
| ATCTGATGTACAAGATGTGA+AGG | 0.579082 | 3.1:+67360236 | MS.gene70526:CDS |
| CAGATATTGGATTTGATGTG+TGG | 0.580726 | 3.1:+67358253 | MS.gene70526:CDS |
| AGCCTGCAGAGGATCCCGAT+AGG | 0.597303 | 3.1:+67357890 | MS.gene70526:CDS |
| CCACACGGTTGCTAGCATCA+TGG | 0.601075 | 3.1:-67360284 | None:intergenic |
| CCTCCTGTATTAATCCAACA+TGG | 0.610624 | 3.1:+67357938 | MS.gene70526:CDS |
| TGCAGAGGATCCCGATAGGG+AGG | 0.623515 | 3.1:+67357894 | MS.gene70526:CDS |
| ATCACTAAGTCCCAATGACA+TGG | 0.628840 | 3.1:+67358317 | MS.gene70526:CDS |
| GTGTGGCTTATCAATGGTCG+AGG | 0.630199 | 3.1:+67358270 | MS.gene70526:CDS |
| TGGAGAATTGAACAACCATA+CGG | 0.639873 | 3.1:-67358205 | None:intergenic |
| CATTGGGACTTAGTGATGCG+TGG | 0.650921 | 3.1:-67358311 | None:intergenic |
| TTACACTAAAGAGACCATGT+TGG | 0.657309 | 3.1:-67357952 | None:intergenic |
| AGGGAGGTCTGGTAAGAAAG+CGG | 0.661319 | 3.1:+67357910 | MS.gene70526:CDS |
| GTTACATCTTGAGCCTGCAG+AGG | 0.665718 | 3.1:+67357879 | MS.gene70526:CDS |
| CCATGTTGGATTAATACAGG+AGG | 0.666266 | 3.1:-67357938 | None:intergenic |
| CATCCTTGAACAATACCACA+CGG | 0.673124 | 3.1:-67360299 | None:intergenic |
| AAGACTATTGTAGAGACACA+AGG | 0.682047 | 3.1:+67357647 | MS.gene70526:CDS |
| CCATGATGCTAGCAACCGTG+TGG | 0.780724 | 3.1:+67360284 | MS.gene70526:CDS |
| CATGTGGAACGAATTCACGG+AGG | 0.834375 | 3.1:-67359193 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATATAAAAATGACA+TGG | - | chr3.1:67359904-67359923 | None:intergenic | 10.0% |
| !! | AACTATGTATAATATTAAAG+AGG | + | chr3.1:67358868-67358887 | MS.gene70526:intron | 15.0% |
| !! | ATACTAATTACAACAATTAT+TGG | + | chr3.1:67359486-67359505 | MS.gene70526:intron | 15.0% |
| !!! | ACTATTGATATAAATTTTTC+AGG | + | chr3.1:67358667-67358686 | MS.gene70526:intron | 15.0% |
| !!! | CTATTGATATAAATTTTTCA+GGG | + | chr3.1:67358668-67358687 | MS.gene70526:intron | 15.0% |
| !!! | TTATTTTACAAAGAAAAAAG+TGG | + | chr3.1:67358936-67358955 | MS.gene70526:intron | 15.0% |
| !!! | TTTTCATAATTGTATTCAAT+TGG | - | chr3.1:67359130-67359149 | None:intergenic | 15.0% |
| !!! | TTTTTTATTCCATTTTGTAT+AGG | + | chr3.1:67358465-67358484 | MS.gene70526:intron | 15.0% |
| !! | AATTGAAGTGGTATTAATAA+TGG | - | chr3.1:67357798-67357817 | None:intergenic | 20.0% |
| !! | ACTCAGTAAGTAAAAAAATA+GGG | - | chr3.1:67359236-67359255 | None:intergenic | 20.0% |
| !! | ATCATACTTAACAATACTTT+AGG | - | chr3.1:67359857-67359876 | None:intergenic | 20.0% |
| !! | GATCAAATTATATTTAGTCA+TGG | - | chr3.1:67359682-67359701 | None:intergenic | 20.0% |
| !! | TAATGTAACAGGATATATAT+TGG | + | chr3.1:67359165-67359184 | MS.gene70526:intron | 20.0% |
| !! | TACTCAGTAAGTAAAAAAAT+AGG | - | chr3.1:67359237-67359256 | None:intergenic | 20.0% |
| !!! | ACCTATAAATTTTAAAGGTA+AGG | - | chr3.1:67359527-67359546 | None:intergenic | 20.0% |
| !!! | ATTTTTATGCATTTATGAAC+AGG | + | chr3.1:67360017-67360036 | MS.gene70526:intron | 20.0% |
| !!! | TAAAATTAATTTTCTCTACG+TGG | + | chr3.1:67359944-67359963 | MS.gene70526:intron | 20.0% |
| !!! | TCCTTACCTTTAAAATTTAT+AGG | + | chr3.1:67359523-67359542 | MS.gene70526:intron | 20.0% |
| !!! | TGTTATTTTAACAACCAATT+TGG | + | chr3.1:67358893-67358912 | MS.gene70526:intron | 20.0% |
| !!! | TTTGGACCTATAAATTTTAA+AGG | - | chr3.1:67359532-67359551 | None:intergenic | 20.0% |
| ! | ACTTTATCTCTCTATTGTTA+TGG | - | chr3.1:67359020-67359039 | None:intergenic | 25.0% |
| ! | ATAAGAATTAACCATGTCAT+TGG | - | chr3.1:67358331-67358350 | None:intergenic | 25.0% |
| ! | ATATGTGATATCAATTGAAG+TGG | - | chr3.1:67357810-67357829 | None:intergenic | 25.0% |
| ! | ATCCTGTTACATTAGAAAAA+AGG | - | chr3.1:67359159-67359178 | None:intergenic | 25.0% |
| ! | ATGTTTGAGTGCAAAAAAAA+GGG | + | chr3.1:67359266-67359285 | MS.gene70526:intron | 25.0% |
| ! | ATTGGAATAAAACTTCTAGA+TGG | + | chr3.1:67359346-67359365 | MS.gene70526:CDS | 25.0% |
| ! | CTGTGAATAATGGTAATAAA+CGG | - | chr3.1:67359405-67359424 | None:intergenic | 25.0% |
| ! | GGTACTTTAGATGTTAATAA+TGG | + | chr3.1:67359424-67359443 | MS.gene70526:intron | 25.0% |
| ! | TAAGAATTAACCATGTCATT+GGG | - | chr3.1:67358330-67358349 | None:intergenic | 25.0% |
| ! | TACAAAGAAAAAAGTGGTAT+TGG | + | chr3.1:67358942-67358961 | MS.gene70526:intron | 25.0% |
| ! | TATGTTAATTCTAATGAGCA+GGG | + | chr3.1:67359321-67359340 | MS.gene70526:intron | 25.0% |
| ! | TATGTTTGAGTGCAAAAAAA+AGG | + | chr3.1:67359265-67359284 | MS.gene70526:intron | 25.0% |
| ! | TCAATATCGTATATGTAAAG+TGG | + | chr3.1:67357999-67358018 | MS.gene70526:intron | 25.0% |
| ! | TCCTGTTACATTAGAAAAAA+GGG | - | chr3.1:67359158-67359177 | None:intergenic | 25.0% |
| ! | TTACAATTTCAAATAGTACG+TGG | - | chr3.1:67357722-67357741 | None:intergenic | 25.0% |
| ! | TTATGTTAATTCTAATGAGC+AGG | + | chr3.1:67359320-67359339 | MS.gene70526:intron | 25.0% |
| !! | TAACAGGATATATATTGGTT+AGG | + | chr3.1:67359170-67359189 | MS.gene70526:intron | 25.0% |
| !!! | ATTTATTTTTGTGTTGACCT+AGG | + | chr3.1:67357841-67357860 | MS.gene70526:intron | 25.0% |
| !!! | ATTTTGGTTATGTCATATGT+TGG | - | chr3.1:67360168-67360187 | None:intergenic | 25.0% |
| !!! | GGATTTATTTTAGCAGATAT+TGG | + | chr3.1:67358240-67358259 | MS.gene70526:CDS | 25.0% |
| !!! | TGCACATATTGATTTTATAG+CGG | + | chr3.1:67360326-67360345 | MS.gene70526:CDS | 25.0% |
| AAAACACTTCACATAAGCAA+TGG | + | chr3.1:67357578-67357597 | MS.gene70526:CDS | 30.0% | |
| AATAGAGAGAGAGAAAAAAG+TGG | + | chr3.1:67358980-67358999 | MS.gene70526:intron | 30.0% | |
| AATTCTCCAGAAGAATCATT+GGG | + | chr3.1:67358219-67358238 | MS.gene70526:CDS | 30.0% | |
| ACACTCACAAAAGAGAAAAT+AGG | - | chr3.1:67358103-67358122 | None:intergenic | 30.0% | |
| AGCATCCTGAAATAAATCAT+AGG | - | chr3.1:67358184-67358203 | None:intergenic | 30.0% | |
| AGTTGTTACATACACAAACA+TGG | - | chr3.1:67358650-67358669 | None:intergenic | 30.0% | |
| ATAAATCCCAATGATTCTTC+TGG | - | chr3.1:67358228-67358247 | None:intergenic | 30.0% | |
| ATATACTACACTATGGACAA+AGG | + | chr3.1:67360136-67360155 | MS.gene70526:CDS | 30.0% | |
| ATGGATCAAATTCTTTGTTG+CGG | - | chr3.1:67359611-67359630 | None:intergenic | 30.0% | |
| ATTTGAGTCATATGAGCAAT+TGG | - | chr3.1:67358767-67358786 | None:intergenic | 30.0% | |
| CAAATAAGTTGTCACCAAAT+TGG | - | chr3.1:67358910-67358929 | None:intergenic | 30.0% | |
| CAATATGTGTACAACTATAC+TGG | + | chr3.1:67358544-67358563 | MS.gene70526:CDS | 30.0% | |
| CGTTTATTACCATTATTCAC+AGG | + | chr3.1:67359403-67359422 | MS.gene70526:CDS | 30.0% | |
| GAAGAATTTATGCAGCAATT+TGG | - | chr3.1:67359550-67359569 | None:intergenic | 30.0% | |
| GCACAAAATATACTACACTA+TGG | + | chr3.1:67360129-67360148 | MS.gene70526:CDS | 30.0% | |
| GCATTGAAAAAAGCTATCAT+GGG | - | chr3.1:67360381-67360400 | None:intergenic | 30.0% | |
| GCTTCTGAATGTATTAAGAT+CGG | + | chr3.1:67358727-67358746 | MS.gene70526:CDS | 30.0% | |
| GGTCAAAAAATGCATTATGT+CGG | + | chr3.1:67358565-67358584 | MS.gene70526:CDS | 30.0% | |
| TATACTACACTATGGACAAA+GGG | + | chr3.1:67360137-67360156 | MS.gene70526:CDS | 30.0% | |
| TATTTATTCTCTTACGCATG+TGG | - | chr3.1:67359212-67359231 | None:intergenic | 30.0% | |
| TGACTCCTATGATTTATTTC+AGG | + | chr3.1:67358176-67358195 | MS.gene70526:intron | 30.0% | |
| TTGCTGCATAAATTCTTCAA+AGG | + | chr3.1:67359552-67359571 | MS.gene70526:CDS | 30.0% | |
| TTTCTCTCTCTCTATTGTTA+TGG | - | chr3.1:67358976-67358995 | None:intergenic | 30.0% | |
| ! | AGCAGCAATTTTTGTTAACT+CGG | - | chr3.1:67358795-67358814 | None:intergenic | 30.0% |
| ! | AGCATTGAAAAAAGCTATCA+TGG | - | chr3.1:67360382-67360401 | None:intergenic | 30.0% |
| ! | CAGACTTACTTTGAGAAAAA+TGG | - | chr3.1:67359630-67359649 | None:intergenic | 30.0% |
| ! | CCATTTTGTATAGGCTTATT+GGG | + | chr3.1:67358474-67358493 | MS.gene70526:intron | 30.0% |
| ! | TCCATTTTGTATAGGCTTAT+TGG | + | chr3.1:67358473-67358492 | MS.gene70526:intron | 30.0% |
| ! | TCTAAAGTACCTGTGAATAA+TGG | - | chr3.1:67359415-67359434 | None:intergenic | 30.0% |
| ! | TCTTACACGGTATAAGATTT+TGG | - | chr3.1:67358127-67358146 | None:intergenic | 30.0% |
| ! | TTTGAGTGATCACAAGATTT+TGG | + | chr3.1:67358029-67358048 | MS.gene70526:intron | 30.0% |
| !!! | GCACATATTGATTTTATAGC+GGG | + | chr3.1:67360327-67360346 | MS.gene70526:CDS | 30.0% |
| !!! | TCCCTTTTTTCTAATGTAAC+AGG | + | chr3.1:67359154-67359173 | MS.gene70526:intron | 30.0% |
| AAGACTATTGTAGAGACACA+AGG | + | chr3.1:67357647-67357666 | MS.gene70526:CDS | 35.0% | |
| ACAGTTCAAATCTCAAAAGC+AGG | + | chr3.1:67359754-67359773 | MS.gene70526:intron | 35.0% | |
| AGACCATGTTGGATTAATAC+AGG | - | chr3.1:67357944-67357963 | None:intergenic | 35.0% | |
| ATCAAATTCTTTGTTGCGGT+TGG | - | chr3.1:67359607-67359626 | None:intergenic | 35.0% | |
| ATCTGATGTACAAGATGTGA+AGG | + | chr3.1:67360236-67360255 | MS.gene70526:CDS | 35.0% | |
| ATTCTAATGAGCAGGGATAT+TGG | + | chr3.1:67359328-67359347 | MS.gene70526:intron | 35.0% | |
| CAATTCTCCAGAAGAATCAT+TGG | + | chr3.1:67358218-67358237 | MS.gene70526:CDS | 35.0% | |
| CAGATATTGGATTTGATGTG+TGG | + | chr3.1:67358253-67358272 | MS.gene70526:CDS | 35.0% | |
| CCCAATAAGCCTATACAAAA+TGG | - | chr3.1:67358477-67358496 | None:intergenic | 35.0% | |
| GAGAGAGAAAAAAGTGGTAT+TGG | + | chr3.1:67358986-67359005 | MS.gene70526:intron | 35.0% | |
| GCAGATACCATCATATTCAT+TGG | - | chr3.1:67357627-67357646 | None:intergenic | 35.0% | |
| TAGCATCATGGTCATTATTG+AGG | - | chr3.1:67360275-67360294 | None:intergenic | 35.0% | |
| TGCTCAAATTTCATAGAGTC+AGG | - | chr3.1:67360064-67360083 | None:intergenic | 35.0% | |
| TGGAGAATTGAACAACCATA+CGG | - | chr3.1:67358208-67358227 | None:intergenic | 35.0% | |
| TGGTTATGTCATATGTTGGA+GGG | - | chr3.1:67360164-67360183 | None:intergenic | 35.0% | |
| TTACACTAAAGAGACCATGT+TGG | - | chr3.1:67357955-67357974 | None:intergenic | 35.0% | |
| TTATACGTGCGAAGAACATA+AGG | + | chr3.1:67357670-67357689 | MS.gene70526:CDS | 35.0% | |
| TTCTCAAAGTAAGTCTGTCA+AGG | + | chr3.1:67359633-67359652 | MS.gene70526:intron | 35.0% | |
| TTGAGGTTCATGATCAAGAT+AGG | - | chr3.1:67359584-67359603 | None:intergenic | 35.0% | |
| TTGGTTATGTCATATGTTGG+AGG | - | chr3.1:67360165-67360184 | None:intergenic | 35.0% | |
| TTGTATAGGCTTATTGGGAT+TGG | + | chr3.1:67358479-67358498 | MS.gene70526:intron | 35.0% | |
| TTTGATGTGTGGCTTATCAA+TGG | + | chr3.1:67358264-67358283 | MS.gene70526:CDS | 35.0% | |
| ! | CCATCATATTCATTGGTAAC+CGG | - | chr3.1:67357620-67357639 | None:intergenic | 35.0% |
| ! | GCAATTTTTGTTAACTCGGA+AGG | - | chr3.1:67358791-67358810 | None:intergenic | 35.0% |
| ! | TGGTTTTTCACAATCATCTC+CGG | + | chr3.1:67357598-67357617 | MS.gene70526:CDS | 35.0% |
| !! | AAGATTTTGGTCACAAGGTT+TGG | + | chr3.1:67358042-67358061 | MS.gene70526:intron | 35.0% |
| !! | AGAAAAAAGTGGTATTGGCA+CGG | + | chr3.1:67358947-67358966 | MS.gene70526:intron | 35.0% |
| !! | ATCACAAGATTTTGGTCACA+AGG | + | chr3.1:67358037-67358056 | MS.gene70526:intron | 35.0% |
| !! | GTGAAGTGTTTTTCTTCCTT+GGG | - | chr3.1:67357570-67357589 | None:intergenic | 35.0% |
| !! | TGTGAAGTGTTTTTCTTCCT+TGG | - | chr3.1:67357571-67357590 | None:intergenic | 35.0% |
| !!! | CTCTTTTTAGCTAATGTGAG+TGG | + | chr3.1:67358818-67358837 | MS.gene70526:intron | 35.0% |
| ACCATCATCTGTTGTAACCT+AGG | - | chr3.1:67357861-67357880 | None:intergenic | 40.0% | |
| ACCTAGGTTACAACAGATGA+TGG | + | chr3.1:67357857-67357876 | MS.gene70526:intron | 40.0% | |
| AGAAAAAGGGGGAATTCACT+AGG | - | chr3.1:67360192-67360211 | None:intergenic | 40.0% | |
| ATAAACGGTTTGTGCAGTTG+AGG | - | chr3.1:67359390-67359409 | None:intergenic | 40.0% | |
| ATCACTAAGTCCCAATGACA+TGG | + | chr3.1:67358317-67358336 | MS.gene70526:CDS | 40.0% | |
| ATTTGAGCAGTGATCAGATC+AGG | + | chr3.1:67360075-67360094 | MS.gene70526:intron | 40.0% | |
| CATCCTTGAACAATACCACA+CGG | - | chr3.1:67360302-67360321 | None:intergenic | 40.0% | |
| CCATGTTGGATTAATACAGG+AGG | - | chr3.1:67357941-67357960 | None:intergenic | 40.0% | |
| CCGGTTACCAATGAATATGA+TGG | + | chr3.1:67357617-67357636 | MS.gene70526:CDS | 40.0% | |
| CCTCCTGTATTAATCCAACA+TGG | + | chr3.1:67357938-67357957 | MS.gene70526:CDS | 40.0% | |
| GAAAAAGGGGGAATTCACTA+GGG | - | chr3.1:67360191-67360210 | None:intergenic | 40.0% | |
| TAAACGGTTTGTGCAGTTGA+GGG | - | chr3.1:67359389-67359408 | None:intergenic | 40.0% | |
| TCAAAGTAAGTCTGTCAAGG+AGG | + | chr3.1:67359636-67359655 | MS.gene70526:intron | 40.0% | |
| TCCTCCATAGCTGAGAAAAA+GGG | - | chr3.1:67360205-67360224 | None:intergenic | 40.0% | |
| TGGTTATGATCTACCTGCTT+CGG | + | chr3.1:67358519-67358538 | MS.gene70526:CDS | 40.0% | |
| TTGCACGAGAAACTCTTACA+CGG | - | chr3.1:67358140-67358159 | None:intergenic | 40.0% | |
| !!! | GCTTTTGCTGCTTTATCTCA+AGG | + | chr3.1:67358701-67358720 | MS.gene70526:CDS | 40.0% |
| ACGCATGTGGAACGAATTCA+CGG | - | chr3.1:67359199-67359218 | None:intergenic | 45.0% | |
| CAACCGTGTGGTATTGTTCA+AGG | + | chr3.1:67360296-67360315 | MS.gene70526:CDS | 45.0% | |
| CCTCCATAGCTGAGAAAAAG+GGG | - | chr3.1:67360204-67360223 | None:intergenic | 45.0% | |
| CTCCATAGCTGAGAAAAAGG+GGG | - | chr3.1:67360203-67360222 | None:intergenic | 45.0% | |
| GCATTATGTCGGTCATTCTC+AGG | + | chr3.1:67358576-67358595 | MS.gene70526:CDS | 45.0% | |
| GTCCTCCATAGCTGAGAAAA+AGG | - | chr3.1:67360206-67360225 | None:intergenic | 45.0% | |
| TACACATATTGTGCCGAAGC+AGG | - | chr3.1:67358535-67358554 | None:intergenic | 45.0% | |
| TATTTCAGGATGCTGCCGTA+TGG | + | chr3.1:67358190-67358209 | MS.gene70526:intron | 45.0% | |
| TGGTCATGGGATGAATTAGC+TGG | + | chr3.1:67358499-67358518 | MS.gene70526:CDS | 45.0% | |
| TTCTTACCAGACCTCCCTAT+CGG | - | chr3.1:67357908-67357927 | None:intergenic | 45.0% | |
| ! | AGTGTTTTTCTTCCTTGGGC+TGG | - | chr3.1:67357566-67357585 | None:intergenic | 45.0% |
| ! | GGGGAATTCACTAGGGATTT+TGG | - | chr3.1:67360184-67360203 | None:intergenic | 45.0% |
| ! | TTCCCCCTTTTTCTCAGCTA+TGG | + | chr3.1:67360198-67360217 | MS.gene70526:CDS | 45.0% |
| ! | TTCTTTGTTGCGGTTGGTTG+AGG | - | chr3.1:67359601-67359620 | None:intergenic | 45.0% |
| !! | AGGCTTATTGGGATTGGTCA+TGG | + | chr3.1:67358485-67358504 | MS.gene70526:intron | 45.0% |
| !! | GGCTTATTGGGATTGGTCAT+GGG | + | chr3.1:67358486-67358505 | MS.gene70526:intron | 45.0% |
| AGGGAGGTCTGGTAAGAAAG+CGG | + | chr3.1:67357910-67357929 | MS.gene70526:CDS | 50.0% | |
| ATAGTACGTGGAACGCAGCA+TGG | - | chr3.1:67357710-67357729 | None:intergenic | 50.0% | |
| CATGTGGAACGAATTCACGG+AGG | - | chr3.1:67359196-67359215 | None:intergenic | 50.0% | |
| CATTGGGACTTAGTGATGCG+TGG | - | chr3.1:67358314-67358333 | None:intergenic | 50.0% | |
| GTGTGGCTTATCAATGGTCG+AGG | + | chr3.1:67358270-67358289 | MS.gene70526:CDS | 50.0% | |
| GTTACATCTTGAGCCTGCAG+AGG | + | chr3.1:67357879-67357898 | MS.gene70526:CDS | 50.0% | |
| TCTTACCAGACCTCCCTATC+GGG | - | chr3.1:67357907-67357926 | None:intergenic | 50.0% | |
| ! | CCCCTTTTTCTCAGCTATGG+AGG | + | chr3.1:67360201-67360220 | MS.gene70526:CDS | 50.0% |
| ! | TTTTGCATTGCACCAGCCCA+AGG | + | chr3.1:67357551-67357570 | MS.gene70526:CDS | 50.0% |
| CCACACGGTTGCTAGCATCA+TGG | - | chr3.1:67360287-67360306 | None:intergenic | 55.0% | |
| CCATGATGCTAGCAACCGTG+TGG | + | chr3.1:67360284-67360303 | MS.gene70526:CDS | 55.0% | |
| GGGACTTAGTGATGCGTGGT+TGG | - | chr3.1:67358310-67358329 | None:intergenic | 55.0% | |
| AGCCTGCAGAGGATCCCGAT+AGG | + | chr3.1:67357890-67357909 | MS.gene70526:CDS | 60.0% | |
| AGGATCCCGATAGGGAGGTC+TGG | + | chr3.1:67357899-67357918 | MS.gene70526:CDS | 60.0% | |
| GCCTGCAGAGGATCCCGATA+GGG | + | chr3.1:67357891-67357910 | MS.gene70526:CDS | 60.0% | |
| TCCCTATCGGGATCCTCTGC+AGG | - | chr3.1:67357895-67357914 | None:intergenic | 60.0% | |
| TGCAGAGGATCCCGATAGGG+AGG | + | chr3.1:67357894-67357913 | MS.gene70526:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 67357503 | 67360407 | 67357503 | ID=MS.gene70526 |
| chr3.1 | mRNA | 67357503 | 67360407 | 67357503 | ID=MS.gene70526.t1;Parent=MS.gene70526 |
| chr3.1 | exon | 67357503 | 67357691 | 67357503 | ID=MS.gene70526.t1.exon1;Parent=MS.gene70526.t1 |
| chr3.1 | CDS | 67357503 | 67357691 | 67357503 | ID=cds.MS.gene70526.t1;Parent=MS.gene70526.t1 |
| chr3.1 | exon | 67357863 | 67357970 | 67357863 | ID=MS.gene70526.t1.exon2;Parent=MS.gene70526.t1 |
| chr3.1 | CDS | 67357863 | 67357970 | 67357863 | ID=cds.MS.gene70526.t1;Parent=MS.gene70526.t1 |
| chr3.1 | exon | 67358198 | 67358338 | 67358198 | ID=MS.gene70526.t1.exon3;Parent=MS.gene70526.t1 |
| chr3.1 | CDS | 67358198 | 67358338 | 67358198 | ID=cds.MS.gene70526.t1;Parent=MS.gene70526.t1 |
| chr3.1 | exon | 67358487 | 67358597 | 67358487 | ID=MS.gene70526.t1.exon4;Parent=MS.gene70526.t1 |
| chr3.1 | CDS | 67358487 | 67358597 | 67358487 | ID=cds.MS.gene70526.t1;Parent=MS.gene70526.t1 |
| chr3.1 | exon | 67358689 | 67358832 | 67358689 | ID=MS.gene70526.t1.exon5;Parent=MS.gene70526.t1 |
| chr3.1 | CDS | 67358689 | 67358832 | 67358689 | ID=cds.MS.gene70526.t1;Parent=MS.gene70526.t1 |
| chr3.1 | exon | 67359176 | 67359216 | 67359176 | ID=MS.gene70526.t1.exon6;Parent=MS.gene70526.t1 |
| chr3.1 | CDS | 67359176 | 67359216 | 67359176 | ID=cds.MS.gene70526.t1;Parent=MS.gene70526.t1 |
| chr3.1 | exon | 67359342 | 67359424 | 67359342 | ID=MS.gene70526.t1.exon7;Parent=MS.gene70526.t1 |
| chr3.1 | CDS | 67359342 | 67359424 | 67359342 | ID=cds.MS.gene70526.t1;Parent=MS.gene70526.t1 |
| chr3.1 | exon | 67359545 | 67359640 | 67359545 | ID=MS.gene70526.t1.exon8;Parent=MS.gene70526.t1 |
| chr3.1 | CDS | 67359545 | 67359640 | 67359545 | ID=cds.MS.gene70526.t1;Parent=MS.gene70526.t1 |
| chr3.1 | exon | 67360085 | 67360407 | 67360085 | ID=MS.gene70526.t1.exon9;Parent=MS.gene70526.t1 |
| chr3.1 | CDS | 67360085 | 67360407 | 67360085 | ID=cds.MS.gene70526.t1;Parent=MS.gene70526.t1 |
| Gene Sequence |
| Protein sequence |
