AlfalfaGEDB | MS.gene71176

M. sativa cultivar XinJiangDaYe / MS.gene71176

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71176.t1	KEH38700.1	66.6	1042	76	1	1	770	14	1055	1.10E-196	696.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71176.t1	Q9FN37	76.6	261	61	0	510	770	775	1035	3.1e-115	417.5
MS.gene71176.t1	Q9FN37	62.1	190	70	1	18	207	16	203	4.0e-17	91.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71176.t1	A0A072VAR0	66.6	1042	76	1	1	770	34	1075	8.0e-197	696.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049227	MS.gene71176	0.806177	9.34E-50	-1.69E-46
MS.gene050258	MS.gene71176	0.803865	2.84E-49	-1.69E-46
MS.gene053218	MS.gene71176	0.808127	3.61E-50	-1.69E-46
MS.gene054142	MS.gene71176	0.817653	2.95E-52	-1.69E-46
MS.gene054585	MS.gene71176	0.803413	3.53E-49	-1.69E-46
MS.gene056473	MS.gene71176	0.803126	4.04E-49	-1.69E-46
MS.gene057082	MS.gene71176	0.810844	9.42E-51	-1.69E-46
MS.gene05859	MS.gene71176	0.825711	4.04E-54	-1.69E-46
MS.gene05860	MS.gene71176	0.828956	6.74E-55	-1.69E-46
MS.gene05970	MS.gene71176	0.805414	1.35E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71176.t1	MTR_2g078810	95.455	506	23	0	1	506	34	539	0.0	946
MS.gene71176.t1	MTR_2g078810	98.491	265	4	0	506	770	811	1075	0.0	560
MS.gene71176.t1	MTR_2g078810	29.358	327	184	5	68	350	341	664	3.26e-18	90.1
MS.gene71176.t1	MTR_2g078810	95.455	506	23	0	1	506	14	519	0.0	945
MS.gene71176.t1	MTR_2g078810	98.491	265	4	0	506	770	791	1055	0.0	560
MS.gene71176.t1	MTR_2g078810	29.358	327	184	5	68	350	321	644	2.84e-18	90.5
MS.gene71176.t1	MTR_8g023720	67.681	263	82	1	504	763	821	1083	1.24e-114	373
MS.gene71176.t1	MTR_8g023720	40.000	490	260	12	44	506	70	552	6.66e-78	272
MS.gene71176.t1	MTR_8g023720	28.321	399	214	7	65	393	275	671	1.91e-23	107
MS.gene71176.t1	MTR_8g023720	28.065	310	177	7	242	508	121	427	1.73e-13	75.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71176.t1	AT5G53890	43.678	783	360	16	67	770	255	1035	4.71e-168	512
MS.gene71176.t1	AT5G53890	56.238	505	215	4	18	521	16	515	5.95e-165	504
MS.gene71176.t1	AT2G02220	67.054	258	85	0	506	763	751	1008	7.43e-122	390
MS.gene71176.t1	AT2G02220	44.488	508	247	7	4	506	13	490	2.63e-109	357
MS.gene71176.t1	AT2G02220	29.968	317	197	5	94	393	318	626	1.30e-22	104
MS.gene71176.t1	AT2G02220	32.314	229	135	6	53	277	400	612	7.13e-16	82.8
MS.gene71176.t1	AT2G02220	27.273	297	181	8	240	508	80	369	1.11e-15	82.0
MS.gene71176.t1	AT1G72300	60.967	269	102	1	504	769	815	1083	2.38e-109	358
MS.gene71176.t1	AT1G72300	39.761	503	280	10	21	505	48	545	3.36e-96	323
MS.gene71176.t1	AT1G72300	27.455	499	314	13	27	508	191	658	1.15e-31	133

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Find 142 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGCCAGAAAATGAAT+TGG	0.416166	2.1:+21593591	None:intergenic
AAAATGTTACCAAACACATT+TGG	0.309096	2.1:+21593424	None:intergenic
AAACAAAAGGGAAGATAATT+TGG	0.237075	2.1:+21593123	None:intergenic
AAAGCCAAAGTGGAAGGTAA+TGG	0.564134	2.1:+21593358	None:intergenic
AAAGGTTTGACAGAGTTGAA+GGG	0.635328	2.1:-21592764	MS.gene71176:CDS
AAATGTTACCAAACACATTT+GGG	0.322929	2.1:+21593425	None:intergenic
AACATTGAATACAATGACTC+AGG	0.560107	2.1:+21593568	None:intergenic
AACTTTCAATTCATGACAAT+AGG	0.408121	2.1:+21593195	None:intergenic
AAGAACCTTGTTTCTCTTAA+AGG	0.127743	2.1:-21591810	MS.gene71176:CDS
AAGAGGCTTTCTGGCGACTG+CGG	0.601955	2.1:-21591888	MS.gene71176:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATTGAATACAATGACTC+AGG	+	chr2.1:21591833-21591852	None:intergenic	30.0%
AATACAATGACTCAGGAAAA+GGG	+	chr2.1:21591826-21591845	None:intergenic	30.0%
AATGTGAGGTTGTTAAATGA+AGG	+	chr2.1:21592967-21592986	None:intergenic	30.0%
ATCAAGACATTTACAAGCAA+TGG	+	chr2.1:21594174-21594193	None:intergenic	30.0%
ATTGCAACAAACACTATCAT+TGG	+	chr2.1:21591285-21591304	None:intergenic	30.0%
CTTTCATTCAATCATCTTCA+TGG	-	chr2.1:21591440-21591459	MS.gene71176:CDS	30.0%
GAAACAACCATTTCAATAGA+AGG	+	chr2.1:21594215-21594234	None:intergenic	30.0%
GCAAAGTTGTTAACAATATG+AGG	-	chr2.1:21593124-21593143	MS.gene71176:CDS	30.0%
GCTGTTAAAATGCAAGAAAT+TGG	-	chr2.1:21592495-21592514	MS.gene71176:intron	30.0%
GTATTTCTCTTAACAAAGAG+TGG	+	chr2.1:21592712-21592731	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	21591146	21594274	21591146	ID=MS.gene71176
chr2.1	mRNA	21591146	21594274	21591146	ID=MS.gene71176.t1;Parent=MS.gene71176
chr2.1	exon	21592760	21594274	21592760	ID=MS.gene71176.t1.exon1;Parent=MS.gene71176.t1
chr2.1	CDS	21592760	21594274	21592760	ID=cds.MS.gene71176.t1;Parent=MS.gene71176.t1
chr2.1	exon	21591146	21591943	21591146	ID=MS.gene71176.t1.exon2;Parent=MS.gene71176.t1
chr2.1	CDS	21591146	21591943	21591146	ID=cds.MS.gene71176.t1;Parent=MS.gene71176.t1

Gene Sequence

>MS.gene71176

TGTTGTGTCTTGTCTTGCTTACTTTGTTTGTGTCTGAGTCTTGACAATGGAACAAAATCATGTGATCCTAGTGATTTATCAGCTTTGAAGGAGTTTGCAGGCAACCTTACAAATGGTTCAATTATCAAATCATGGTCCAATGATAGTGTTTGTTGCAATTGGATTGGAATTGTGTGTGGTGATAACAATGGAGAAGCTGTTTCTAGAGTGACCAAGTTGAGCCTTTCTGAAATGAGTCTCAATGGAACAATTTCACCCTCTTTAGCAAAACTAGATCAACTCACTGTGCTAAATCTTTCATTCAATCATCTTCATGGTGGATTGCCTTTGGAATTGTCAAAGTTGAAGATGTTGAAGTTTCTTGATTTGAGCTATAACATGTTGTCAGGAGGTGTGAATGAATCACTTTCTGGTTTGAAGTCCATTGAAGTGTTGAATATTTCAAGCAATTCATTTTCTGATAAAGTTTTCCACCTTGGTGAATTTCCTCATCTACTTGCTCTCAATGTGAGTAACAATTCATTCTCTGGTGGATTCAGTTCTCAAATTTGCAATTCTTCAAAGAATCTTCACACACTTGATTTATCTTTAAATCATTTTAGTGGTGATCTTGAAGGTTTGAACAACTGCACTGTTTCTCTCCAAAGGTTACATTTAGATTCCAATTCATTTTCTGGCCCTTTTCCTGAGTCATTGTATTCAATGTTATCATTGGAGAGATTATCACTGTCTGCCAACAATTTTTCTGGCAAGTTAAGCAATGAGTTAAGTAAGCTTACTAGCCTAAAATCTCTTGTAGTTTCTGCAAACCATTTTTCAGGTGAAATCCCAAATGTGTTTGGTAACATTTTGCAATTAGAACAATTTGTAGCACATGCTAATTCATTTTCTGGACCATTACCTTCCACTTTGGCTTTATGCTCTAAGCTTAAAGTGCTTGATCTTAAAAACAATTCATTGTCAGGTTCAGTTGATCTTAATTTCACTGGTTTGTCAAATCTTTGTTCACTTGATCTTGCCAGTAATCATTTTACTGGACCACTTCCTAGTTCATTGTCCTATTGTCATGAATTGAAAGTTTTAAGCCTTGCTAGGAATGGTTTAAATGGTTCTATACCTGAAAGCTATGCCAAATTATCTTCCCTTTTGTTTGTATCTTTTTCGAACAATAGCTTAGATAATTTATCTGGTGCACTTACTGTTCTTCAGAAGTGCAAAAACCTCACAACGCTTATCCTCACTAAGAATTTCCATGGCGAAGAAATTCCACAAGATGTACCTGGAGGATTTGAGAGTCTTATGGTGTTAGCACTCGGGAACTGCGGTCTGAAGAGTCATATTCCTTCTTGGCTGTTAAAATGCAAGAAATTGGCTGTACTTGATTTGTCTTGGAACTCTTTGAATGGCAGTATCCCTTCGTGGATTGGTCAAATGGACAAATTGTTCTATTTGGATTTCTCAAACAATTCTCTCTCAGGTGAAATACCGAAAGGTTTGACAGAGTTGAAGGGACTTGTATGTTCAAATTGTGGAAGACCAAATTTTGGTTCTTATGCTTTCATTCCACTCTTTGTTAAGAGAAATACTAGTGCTAGTGGTTTGCAATATAATCAAGCTTCAAGTTTCCCTCCTTCAATTTTGTTGAGCAATAACATATTAAATGGAAGTATATGGCCTGAAATTGGTAACTTGAAGGCACTGCATGTGTTGGATTTCAGCAGGAACAACATCAGTGGTACAATTCCTAGCACTATTTCGGAGATGGAGAATTTGGAAACATTAGATTTATCTTATAATGATCTCTCTGGTACAATCCCTCCTTCATTTAACAACCTCACATTCTTGTCGAAGTTCAGTGTGGCGTATAATCGCTTGCAAGGACCGATTCCAAGTGGAGGGCAGTTTTTAAGCTTCCCTAATTCAAGCTTTGAGGGCAATTTGGGACTTTGCAGGGATTTTGATGTTGATAATACTCCTTGCAAAGTTGTTAACAATATGAGGCCAAATATGTCTTCTGGTTCATCCAGAAAATTTAGTAGAAGCAATGTTCTTGGCATAACAATCAGCATAGGGATAGCGCTTGCTTTGTTGCTTGCAGTTATTGTGCTAAGAATGTCAAAGAGGGAAGAAGATAAGCCAATTGATAACTTTGATGAGGAGGTGAGCGGAAGGCCACGCAGGTTATCATCTGAAGGGTTTGTTGCTTCGAAATTGGTGCTTTTTCAGAATTCAGATTGCAAGGATCTCACAGTTTCGGATTTGTTAAAAGCAACAAGCAATTTCAACCAGGCGAACATTGTCGGTTGTGGTGGCTTCGGTCTTGTTTACAAGGCGTATCTTCCGAACGGCATGAAAGCAGCTGTCAAGAGGCTTTCTGGCGACTGCGGTCAGATGGAACGTGAATTTCAAGCCGAAGTCGAAGCCCTCTCAAGAGCTCAACACAAGAACCTTGTTTCTCTTAAAGGCTATTGTCGGCATGGCAATGACCGGTTGCTAATTTACTCGTACATGGAGAACGGTAGCTTAGATTATTGGCTTCACGAGTGTGCGGATGGAAATTCAGCTCTGAAATGGGATGTACGACTCAAGATTGCTCAAGGCGCGGCTCGTGGATTAGCTTACCTGCATAAGGATTGCGAACCGTACATTGTGCACCGCGACATCAAATCTAGCAACATACTTTTGAATGATAAGTTTGAAGCTCATTTGGCTGATTTTGGTCTCTCAAGACTACTTTCACCGTACGATACTCATGTCACAACAGACTTGGTAGGAACTTTAGGGTATATTCCTCCAGAATATAGTCAGACACTGACAGCGACATTCCGCGGCGATGTCTATAGTTTCGGAGTTGTTCTTCTCGAGCTTCTTACCGGTAGAAGGCCTGTTGAAGTCATCAAGGGGAAAAACTGCAGGAATCTGGTGTCTTGGGTTTATCAGATGAAATACGAAAATAAGGAGCAGGAAATTTTTGATCAAGCCATTTGGGAAAAGGAAAGGGAGAAACAACTATTGGAAGTACTGTCCATTGCTTGTAAATGTCTTGATCAAGATCCAAGGCAAAGACCTTCTATTGAAATGGTTGTTTCATGGCTTGATAGTGTAAAAGTTGATGGCTTTCAACAATGA

Protein sequence

>MS.gene71176.t1

CCVLSCLLCLCLSLDNGTKSCDPSDLSALKEFAGNLTNGSIIKSWSNDSVCCNWIGIVCGDNNGEAVSRVTKLSLSEMSLNGTISPSLAKLDQLTVLNLSFNHLHGGLPLELSKLKMLKFLDLSYNMLSGGVNESLSGLKSIEVLNISSNSFSDKVFHLGEFPHLLALNVSNNSFSGGFSSQICNSSKNLHTLDLSLNHFSGDLEGLNNCTVSLQRLHLDSNSFSGPFPESLYSMLSLERLSLSANNFSGKLSNELSKLTSLKSLVVSANHFSGEIPNVFGNILQLEQFVAHANSFSGPLPSTLALCSKLKVLDLKNNSLSGSVDLNFTGLSNLCSLDLASNHFTGPLPSSLSYCHELKVLSLARNGLNGSIPESYAKLSSLLFVSFSNNSLDNLSGALTVLQKCKNLTTLILTKNFHGEEIPQDVPGGFESLMVLALGNCGLKSHIPSWLLKCKKLAVLDLSWNSLNGSIPSWIGQMDKLFYLDFSNNSLSGEIPKGLTELKGLAYLPNGMKAAVKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNDRLLIYSYMENGSLDYWLHECADGNSALKWDVRLKIAQGAARGLAYLHKDCEPYIVHRDIKSSNILLNDKFEAHLADFGLSRLLSPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVYQMKYENKEQEIFDQAIWEKEREKQLLEVLSIACKCLDQDPRQRPSIEMVVSWLDSVKVDGFQQ