Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71481.t1 | XP_003588686.2 | 96.3 | 163 | 5 | 1 | 1 | 162 | 1 | 163 | 4.10E-85 | 323.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71481.t1 | Q9LU21 | 43.6 | 156 | 73 | 4 | 20 | 161 | 30 | 184 | 7.5e-27 | 121.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71481.t1 | G7I6B2 | 96.3 | 163 | 5 | 1 | 1 | 162 | 1 | 163 | 3.0e-85 | 323.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050670 | MS.gene71481 | 0.825787 | 3.88E-54 | -1.69E-46 |
| MS.gene05105 | MS.gene71481 | 0.803594 | 3.24E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene71481 | 0.824724 | 6.91E-54 | -1.69E-46 |
| MS.gene055116 | MS.gene71481 | 0.803362 | 3.61E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene71481 | 0.80551 | 1.29E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene71481 | 0.827998 | 1.15E-54 | -1.69E-46 |
| MS.gene057823 | MS.gene71481 | 0.815072 | 1.11E-51 | -1.69E-46 |
| MS.gene057824 | MS.gene71481 | 0.800908 | 1.16E-48 | -1.69E-46 |
| MS.gene057825 | MS.gene71481 | 0.814378 | 1.59E-51 | -1.69E-46 |
| MS.gene05886 | MS.gene71481 | 0.861738 | 8.31E-64 | -1.69E-46 |
| MS.gene059420 | MS.gene71481 | 0.807654 | 4.55E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene71481 | 0.808828 | 2.56E-50 | -1.69E-46 |
| MS.gene059688 | MS.gene71481 | 0.805444 | 1.33E-49 | -1.69E-46 |
| MS.gene059692 | MS.gene71481 | 0.807195 | 5.69E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene71481 | 0.805139 | 1.54E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71481.t1 | MTR_1g011510 | 96.319 | 163 | 5 | 1 | 1 | 162 | 1 | 163 | 2.21e-113 | 318 |
| MS.gene71481.t1 | MTR_2g101380 | 43.030 | 165 | 84 | 4 | 6 | 161 | 11 | 174 | 2.46e-37 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71481.t1 | AT4G32590 | 84.167 | 120 | 19 | 0 | 43 | 162 | 54 | 173 | 1.02e-62 | 191 |
| MS.gene71481.t1 | AT4G32590 | 82.569 | 109 | 19 | 0 | 43 | 151 | 54 | 162 | 1.18e-53 | 168 |
| MS.gene71481.t1 | AT4G32590 | 78.409 | 88 | 19 | 0 | 43 | 130 | 54 | 141 | 6.70e-37 | 125 |
| MS.gene71481.t1 | AT3G16250 | 43.590 | 156 | 73 | 4 | 20 | 161 | 30 | 184 | 3.85e-35 | 122 |
| MS.gene71481.t1 | AT4G32590 | 80.597 | 67 | 13 | 0 | 43 | 109 | 54 | 120 | 2.38e-24 | 92.0 |
| MS.gene71481.t1 | AT4G32590 | 75.510 | 49 | 12 | 0 | 43 | 91 | 54 | 102 | 4.47e-21 | 83.2 |
Find 54 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGCCAACCTCCAAGATTC+AGG | 0.247976 | 1.3:-9522390 | None:intergenic |
| GAAAATAAATGGTTGGATTC+CGG | 0.304867 | 1.3:-9520568 | None:intergenic |
| ATGAACTCCAGCTCTATTTC+CGG | 0.309865 | 1.3:-9520650 | None:intergenic |
| TCCGGAGGAGAAGGAGATTC+AGG | 0.327786 | 1.3:-9520632 | None:intergenic |
| TCGCCGCCGGGGAAAATAAA+TGG | 0.351768 | 1.3:-9520579 | None:intergenic |
| AATGGTTGGATTCCGGTTAC+CGG | 0.353946 | 1.3:-9520561 | None:intergenic |
| AAGTTGATGAACTGCGGTGG+AGG | 0.365012 | 1.3:+9521633 | MS.gene71481:CDS |
| AGAGGGTGATGGGTCGTTTC+CGG | 0.368856 | 1.3:+9520780 | MS.gene71481:CDS |
| TTGGCTTGTCAAACTATTGT+AGG | 0.372078 | 1.3:+9522405 | MS.gene71481:CDS |
| ATAAACAGAAACCTGAATCT+TGG | 0.374507 | 1.3:+9522379 | MS.gene71481:intron |
| TTACCGGCGGTGAGTGGAAC+TGG | 0.390189 | 1.3:-9520545 | None:intergenic |
| AAATAGAGCTGGAGTTCATT+GGG | 0.393000 | 1.3:+9520654 | MS.gene71481:CDS |
| GACCCATCACCCTCTGGCTT+TGG | 0.402586 | 1.3:-9520772 | None:intergenic |
| GAAATAGAGCTGGAGTTCAT+TGG | 0.409789 | 1.3:+9520653 | MS.gene71481:CDS |
| TTCCACTCACCGCCGGTAAC+CGG | 0.413919 | 1.3:+9520549 | MS.gene71481:CDS |
| CTTCGGTTGCAGATCATTGA+AGG | 0.429966 | 1.3:+9521886 | MS.gene71481:intron |
| AACTGAGTTCGGTCGCCGCC+GGG | 0.457166 | 1.3:-9520591 | None:intergenic |
| GCCTGAATCTCCTTCTCCTC+CGG | 0.472889 | 1.3:+9520631 | MS.gene71481:CDS |
| GCAACGAAACAAACTGAGTT+CGG | 0.481120 | 1.3:-9520602 | None:intergenic |
| GTATGTTACTTCTTCCATTG+AGG | 0.486929 | 1.3:-9523287 | None:intergenic |
| CAGCCAAAGCCAGAGGGTGA+TGG | 0.497718 | 1.3:+9520769 | MS.gene71481:intron |
| AGCTCTATTTCCGGAGGAGA+AGG | 0.500109 | 1.3:-9520641 | None:intergenic |
| TTCTCCTCCGGAAATAGAGC+TGG | 0.505143 | 1.3:+9520643 | MS.gene71481:CDS |
| AAACTGAGTTCGGTCGCCGC+CGG | 0.506246 | 1.3:-9520592 | None:intergenic |
| ATTGCTTTCACTTTATCCAC+CGG | 0.506855 | 1.3:-9520799 | None:intergenic |
| AGTTGATGAACTGCGGTGGA+GGG | 0.519467 | 1.3:+9521634 | MS.gene71481:CDS |
| GAAACCTGAATCTTGGAGGT+TGG | 0.519969 | 1.3:+9522386 | MS.gene71481:intron |
| AACAGAAACCTGAATCTTGG+AGG | 0.523913 | 1.3:+9522382 | MS.gene71481:intron |
| TTCCGGTTACCGGCGGTGAG+TGG | 0.524356 | 1.3:-9520551 | None:intergenic |
| TGAACTAAAATATCTTAAGA+AGG | 0.529764 | 1.3:+9521939 | MS.gene71481:CDS |
| GGAAACGACCCATCACCCTC+TGG | 0.530181 | 1.3:-9520778 | None:intergenic |
| TTGATGAACTGCGGTGGAGG+GGG | 0.531421 | 1.3:+9521636 | MS.gene71481:CDS |
| TTGTTCAAAGGATTCCTCAA+TGG | 0.532551 | 1.3:+9523273 | MS.gene71481:CDS |
| AGCCAAAGCCAGAGGGTGAT+GGG | 0.532902 | 1.3:+9520770 | MS.gene71481:intron |
| GTTGATGAACTGCGGTGGAG+GGG | 0.538567 | 1.3:+9521635 | MS.gene71481:CDS |
| TGGCTTGTCAAACTATTGTA+GGG | 0.544664 | 1.3:+9522406 | MS.gene71481:CDS |
| GTTGCAGATCATTGAAGGAA+AGG | 0.566306 | 1.3:+9521891 | MS.gene71481:intron |
| CGCCGGGGAAAATAAATGGT+TGG | 0.580484 | 1.3:-9520575 | None:intergenic |
| GGGTGATGGGTCGTTTCCGG+TGG | 0.591158 | 1.3:+9520783 | MS.gene71481:CDS |
| GTAGGGAACAAAGAAAACTC+TGG | 0.594992 | 1.3:+9522423 | MS.gene71481:CDS |
| ACTGAGTTCGGTCGCCGCCG+GGG | 0.605244 | 1.3:-9520590 | None:intergenic |
| ACACCAGTTCCACTCACCGC+CGG | 0.614691 | 1.3:+9520542 | MS.gene71481:CDS |
| GAACAAAGAAAACTCTGGCA+AGG | 0.616661 | 1.3:+9522428 | MS.gene71481:CDS |
| GGGAAGTTGATGAACTGCGG+TGG | 0.636301 | 1.3:+9521630 | MS.gene71481:CDS |
| CTGCGGAACTTGCATAGTCG+AGG | 0.643203 | 1.3:+9521662 | MS.gene71481:CDS |
| AACTCCAGCTCTATTTCCGG+AGG | 0.644295 | 1.3:-9520647 | None:intergenic |
| TGATTGCAGCCAAAGCCAGA+GGG | 0.652551 | 1.3:+9520763 | MS.gene71481:intron |
| GGTTGGATTCCGGTTACCGG+CGG | 0.656174 | 1.3:-9520558 | None:intergenic |
| ATGATTGCAGCCAAAGCCAG+AGG | 0.657227 | 1.3:+9520762 | MS.gene71481:intron |
| GCTGATGAGAAGCATCATGT+CGG | 0.667602 | 1.3:+9520834 | MS.gene71481:CDS |
| GATAAAGTGAAAGCAATAAG+CGG | 0.697309 | 1.3:+9520805 | MS.gene71481:CDS |
| AATAGAGCTGGAGTTCATTG+GGG | 0.704244 | 1.3:+9520655 | MS.gene71481:CDS |
| CAGGGGAAGTTGATGAACTG+CGG | 0.716036 | 1.3:+9521627 | MS.gene71481:intron |
| TGGTAGGATACATACATACG+TGG | 0.737259 | 1.3:-9520878 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTTCTTCTATAAAAAA+TGG | + | chr1.3:9521188-9521207 | MS.gene71481:intron | 10.0% |
| !! | TTAAACACAATAAAAAAAAA+CGG | - | chr1.3:9521068-9521087 | None:intergenic | 10.0% |
| !! | ATATATTATACTTTCTATGA+TGG | + | chr1.3:9523238-9523257 | MS.gene71481:intron | 15.0% |
| !! | ATTAAATATGAATGTTACAT+TGG | + | chr1.3:9521296-9521315 | MS.gene71481:intron | 15.0% |
| !! | ATTAGCTAATTTCAAAATAT+TGG | - | chr1.3:9522340-9522359 | None:intergenic | 15.0% |
| !! | TATATTATACTTTCTATGAT+GGG | + | chr1.3:9523239-9523258 | MS.gene71481:intron | 15.0% |
| !! | TCTAATAATAACCATAAAAA+TGG | - | chr1.3:9521725-9521744 | None:intergenic | 15.0% |
| !!! | AAGTATTATTATTTCTTTGA+AGG | + | chr1.3:9522091-9522110 | MS.gene71481:intron | 15.0% |
| !!! | CATTTTTTAGAAGATTTAAA+AGG | + | chr1.3:9521530-9521549 | MS.gene71481:intron | 15.0% |
| !!! | CTTTTAAATCTTCTAAAAAA+TGG | - | chr1.3:9521532-9521551 | None:intergenic | 15.0% |
| !!! | TTTTAATAGTGTTTGATATA+TGG | + | chr1.3:9521158-9521177 | MS.gene71481:intron | 15.0% |
| !! | AAATAGACTTAATTCATAGA+AGG | - | chr1.3:9523017-9523036 | None:intergenic | 20.0% |
| !! | AACAACTTTCAGTATATATA+TGG | + | chr1.3:9522892-9522911 | MS.gene71481:intron | 20.0% |
| !! | AGAAATGATGATTCTTAAAA+TGG | + | chr1.3:9522001-9522020 | MS.gene71481:intron | 20.0% |
| !! | ATGATATGATAATTAAAGCA+TGG | + | chr1.3:9523050-9523069 | MS.gene71481:intron | 20.0% |
| !! | TAAAATACTTAGCACATTAT+TGG | + | chr1.3:9522024-9522043 | MS.gene71481:intron | 20.0% |
| !! | TGAACTAAAATATCTTAAGA+AGG | + | chr1.3:9521939-9521958 | MS.gene71481:CDS | 20.0% |
| !! | TTAATTATCATATCATCCAA+AGG | - | chr1.3:9523046-9523065 | None:intergenic | 20.0% |
| !! | TTATGAAACTTGATGAAATA+TGG | - | chr1.3:9522936-9522955 | None:intergenic | 20.0% |
| !!! | ATCTAAAATTATTCATGTCT+GGG | - | chr1.3:9521801-9521820 | None:intergenic | 20.0% |
| !!! | ATTCTAAAATTAATCAAGAC+TGG | + | chr1.3:9523183-9523202 | MS.gene71481:intron | 20.0% |
| !!! | ATTTTAACACATTGTTTTCA+AGG | + | chr1.3:9522052-9522071 | MS.gene71481:intron | 20.0% |
| !!! | GCATTGAGATATAATTTTTT+TGG | + | chr1.3:9521106-9521125 | MS.gene71481:intron | 20.0% |
| !!! | TAGGTTTTTAGATTAATCAT+CGG | + | chr1.3:9521423-9521442 | MS.gene71481:intron | 20.0% |
| !!! | TATCTAAAATTATTCATGTC+TGG | - | chr1.3:9521802-9521821 | None:intergenic | 20.0% |
| !!! | TTATTATTTCTTTGAAGGTA+TGG | + | chr1.3:9522096-9522115 | MS.gene71481:intron | 20.0% |
| !!! | TTTTTGCAATCTAATTTTGA+CGG | + | chr1.3:9521598-9521617 | MS.gene71481:intron | 20.0% |
| ! | AATCATCATTTCTCAAATAC+AGG | - | chr1.3:9521994-9522013 | None:intergenic | 25.0% |
| ! | AGAACATTGAAACTAGAATA+AGG | + | chr1.3:9522755-9522774 | MS.gene71481:intron | 25.0% |
| ! | AGGTTAAATGAGTTAAAGAA+CGG | - | chr1.3:9522246-9522265 | None:intergenic | 25.0% |
| ! | ATTAAGTACTATAGTGCTAA+TGG | + | chr1.3:9523211-9523230 | MS.gene71481:intron | 25.0% |
| ! | GAATTCAGATATCTTAATCA+AGG | + | chr1.3:9521332-9521351 | MS.gene71481:intron | 25.0% |
| !! | AAACTTAGTAAAAAGTGTAC+CGG | - | chr1.3:9522845-9522864 | None:intergenic | 25.0% |
| !! | AAAGAGAAAAAGTACATGTA+TGG | - | chr1.3:9520923-9520942 | None:intergenic | 25.0% |
| !! | ATAATACTTCTCATTTGCTA+AGG | - | chr1.3:9522080-9522099 | None:intergenic | 25.0% |
| !! | CAACTAAGAACAAATTTTGA+GGG | + | chr1.3:9522673-9522692 | MS.gene71481:intron | 25.0% |
| !! | TCAACTAAGAACAAATTTTG+AGG | + | chr1.3:9522672-9522691 | MS.gene71481:intron | 25.0% |
| !! | TCATCTTTTAACCAAGTTAT+CGG | - | chr1.3:9521471-9521490 | None:intergenic | 25.0% |
| !!! | ACTTTTTACTAAGTTTGTTC+CGG | + | chr1.3:9522849-9522868 | MS.gene71481:intron | 25.0% |
| AAAGTACATGTATGGTTGAT+TGG | - | chr1.3:9520915-9520934 | None:intergenic | 30.0% | |
| AAGTCTATTTACTTGACCTT+TGG | + | chr1.3:9523027-9523046 | MS.gene71481:intron | 30.0% | |
| AATGCAAACAAAAGTGACTA+CGG | + | chr1.3:9523110-9523129 | MS.gene71481:intron | 30.0% | |
| ACTATATCTCATGTTTAGTG+TGG | + | chr1.3:9522511-9522530 | MS.gene71481:intron | 30.0% | |
| ATAAACAGAAACCTGAATCT+TGG | + | chr1.3:9522379-9522398 | MS.gene71481:intron | 30.0% | |
| CCATATGTAGTATCAATTAG+AGG | - | chr1.3:9521863-9521882 | None:intergenic | 30.0% | |
| CCTCTAATTGATACTACATA+TGG | + | chr1.3:9521860-9521879 | MS.gene71481:intron | 30.0% | |
| CTCACATTATTGAGAATTGA+AGG | + | chr1.3:9522600-9522619 | MS.gene71481:intron | 30.0% | |
| CTTATATGTAACTATCACTC+TGG | - | chr1.3:9522548-9522567 | None:intergenic | 30.0% | |
| GAAAATAAATGGTTGGATTC+CGG | - | chr1.3:9520571-9520590 | None:intergenic | 30.0% | |
| GATAAAGTGAAAGCAATAAG+CGG | + | chr1.3:9520805-9520824 | MS.gene71481:CDS | 30.0% | |
| GATACTACATATGGATTCTT+CGG | + | chr1.3:9521869-9521888 | MS.gene71481:intron | 30.0% | |
| TATCTGAATTCAGTTTCACT+CGG | - | chr1.3:9521323-9521342 | None:intergenic | 30.0% | |
| TTGAAGAGAACCATACAAAT+TGG | - | chr1.3:9523144-9523163 | None:intergenic | 30.0% | |
| TTTCAGATTATGCCAATATC+AGG | + | chr1.3:9521494-9521513 | MS.gene71481:intron | 30.0% | |
| ! | AGGTCTAAGATTAGAGTATT+TGG | + | chr1.3:9521352-9521371 | MS.gene71481:intron | 30.0% |
| ! | ATCCTTTTTGATCCTGATAT+TGG | - | chr1.3:9521509-9521528 | None:intergenic | 30.0% |
| ! | GAAAGGATCTTTTGAATGAA+AGG | + | chr1.3:9521908-9521927 | MS.gene71481:CDS | 30.0% |
| ! | GGTCTAAGATTAGAGTATTT+GGG | + | chr1.3:9521353-9521372 | MS.gene71481:intron | 30.0% |
| ! | GTATTTGGGATGAGAAAATA+TGG | + | chr1.3:9521367-9521386 | MS.gene71481:intron | 30.0% |
| !! | ACTAGCATGATCCATTTTTA+TGG | + | chr1.3:9521711-9521730 | MS.gene71481:intron | 30.0% |
| !!! | TAGTCACTTTTGTTTGCATT+AGG | - | chr1.3:9523110-9523129 | None:intergenic | 30.0% |
| !!! | TTTTAACTGATTTGCGCTAA+AGG | - | chr1.3:9522266-9522285 | None:intergenic | 30.0% |
| AAATAGAGCTGGAGTTCATT+GGG | + | chr1.3:9520654-9520673 | MS.gene71481:CDS | 35.0% | |
| AATGTTCCTTTCATACTGTG+AGG | + | chr1.3:9522304-9522323 | MS.gene71481:intron | 35.0% | |
| AGTAAAGAGCTCGTTAAAGA+TGG | + | chr1.3:9521395-9521414 | MS.gene71481:intron | 35.0% | |
| ATGTTCCTTTCATACTGTGA+GGG | + | chr1.3:9522305-9522324 | MS.gene71481:intron | 35.0% | |
| ATTGCTTTCACTTTATCCAC+CGG | - | chr1.3:9520802-9520821 | None:intergenic | 35.0% | |
| ATTGGAATTAAGCATGTGGT+AGG | - | chr1.3:9520897-9520916 | None:intergenic | 35.0% | |
| CTACATCATTAGCATCAGAT+AGG | - | chr1.3:9522147-9522166 | None:intergenic | 35.0% | |
| CTCGTTAAAGATGGTTAACT+AGG | + | chr1.3:9521404-9521423 | MS.gene71481:intron | 35.0% | |
| GATACTTCTTACCGATAACT+TGG | + | chr1.3:9521457-9521476 | MS.gene71481:intron | 35.0% | |
| GGAATCTTCTCCAATTTGTA+TGG | + | chr1.3:9523131-9523150 | MS.gene71481:intron | 35.0% | |
| GGCTTACACAATACTCAATA+CGG | + | chr1.3:9522694-9522713 | MS.gene71481:intron | 35.0% | |
| GGTTTGAAAATGAGTTCGAT+TGG | - | chr1.3:9522126-9522145 | None:intergenic | 35.0% | |
| GTTGATTGGAATTAAGCATG+TGG | - | chr1.3:9520901-9520920 | None:intergenic | 35.0% | |
| TGCCAATATCAGGATCAAAA+AGG | + | chr1.3:9521504-9521523 | MS.gene71481:intron | 35.0% | |
| TGGGATGAGAAAATATGGTT+GGG | + | chr1.3:9521372-9521391 | MS.gene71481:intron | 35.0% | |
| TTGGGATGAGAAAATATGGT+TGG | + | chr1.3:9521371-9521390 | MS.gene71481:intron | 35.0% | |
| TTGTTCAAAGGATTCCTCAA+TGG | + | chr1.3:9523273-9523292 | MS.gene71481:CDS | 35.0% | |
| ! | TGGCTTGTCAAACTATTGTA+GGG | + | chr1.3:9522406-9522425 | MS.gene71481:CDS | 35.0% |
| !! | ATCCAACCATTTATTTTCCC+CGG | + | chr1.3:9520573-9520592 | MS.gene71481:CDS | 35.0% |
| !! | TAATTTTGACGGTCACAACA+GGG | + | chr1.3:9521609-9521628 | MS.gene71481:intron | 35.0% |
| !! | TTGGCTTGTCAAACTATTGT+AGG | + | chr1.3:9522405-9522424 | MS.gene71481:CDS | 35.0% |
| !!! | ACTTTCTATGATGGGCTTTT+AGG | + | chr1.3:9523247-9523266 | MS.gene71481:intron | 35.0% |
| !!! | GCTTTTAGGTTGTTGTTCAA+AGG | + | chr1.3:9523261-9523280 | MS.gene71481:intron | 35.0% |
| AAAGTGGTGTCTCAGATTTG+AGG | + | chr1.3:9522730-9522749 | MS.gene71481:intron | 40.0% | |
| AACAGAAACCTGAATCTTGG+AGG | + | chr1.3:9522382-9522401 | MS.gene71481:intron | 40.0% | |
| AATAGAGCTGGAGTTCATTG+GGG | + | chr1.3:9520655-9520674 | MS.gene71481:CDS | 40.0% | |
| ATGAACTCCAGCTCTATTTC+CGG | - | chr1.3:9520653-9520672 | None:intergenic | 40.0% | |
| CATGTTTAGTGTGGCAAATG+TGG | + | chr1.3:9522520-9522539 | MS.gene71481:intron | 40.0% | |
| CGGACAATACCTTAGAAAAG+TGG | + | chr1.3:9522714-9522733 | MS.gene71481:intron | 40.0% | |
| GAAATAGAGCTGGAGTTCAT+TGG | + | chr1.3:9520653-9520672 | MS.gene71481:CDS | 40.0% | |
| GAACAAAGAAAACTCTGGCA+AGG | + | chr1.3:9522428-9522447 | MS.gene71481:CDS | 40.0% | |
| GCAACGAAACAAACTGAGTT+CGG | - | chr1.3:9520605-9520624 | None:intergenic | 40.0% | |
| GTAGGGAACAAAGAAAACTC+TGG | + | chr1.3:9522423-9522442 | MS.gene71481:CDS | 40.0% | |
| GTTGCAGATCATTGAAGGAA+AGG | + | chr1.3:9521891-9521910 | MS.gene71481:intron | 40.0% | |
| TACTACCCTCACAGTATGAA+AGG | - | chr1.3:9522313-9522332 | None:intergenic | 40.0% | |
| TGGTAGGATACATACATACG+TGG | - | chr1.3:9520881-9520900 | None:intergenic | 40.0% | |
| ! | GTGTAATGAGTTGAAGAGAC+TGG | - | chr1.3:9522639-9522658 | None:intergenic | 40.0% |
| ! | TTACTAAGTTTGTTCCGGTG+TGG | + | chr1.3:9522854-9522873 | MS.gene71481:intron | 40.0% |
| ! | TTTTAGCCCCATAGGCTAAA+GGG | + | chr1.3:9522808-9522827 | MS.gene71481:intron | 40.0% |
| !! | AATTTTGACGGTCACAACAG+GGG | + | chr1.3:9521610-9521629 | MS.gene71481:intron | 40.0% |
| !! | CTAATTTTGACGGTCACAAC+AGG | + | chr1.3:9521608-9521627 | MS.gene71481:intron | 40.0% |
| !! | TCTGAGACACCACTTTTCTA+AGG | - | chr1.3:9522726-9522745 | None:intergenic | 40.0% |
| AATAGCCTCCCTTTAGCCTA+TGG | - | chr1.3:9522819-9522838 | None:intergenic | 45.0% | |
| AATGGTTGGATTCCGGTTAC+CGG | - | chr1.3:9520564-9520583 | None:intergenic | 45.0% | |
| ATAGCCTCCCTTTAGCCTAT+GGG | - | chr1.3:9522818-9522837 | None:intergenic | 45.0% | |
| CTAAAGGGAGGCTATTGTTC+CGG | + | chr1.3:9522823-9522842 | MS.gene71481:intron | 45.0% | |
| CTTCGGTTGCAGATCATTGA+AGG | + | chr1.3:9521886-9521905 | MS.gene71481:intron | 45.0% | |
| CTTTAGCCTATGGGGCTAAA+AGG | - | chr1.3:9522809-9522828 | None:intergenic | 45.0% | |
| GAAACCTGAATCTTGGAGGT+TGG | + | chr1.3:9522386-9522405 | MS.gene71481:intron | 45.0% | |
| ! | CTTTTAGCCCCATAGGCTAA+AGG | + | chr1.3:9522807-9522826 | MS.gene71481:intron | 45.0% |
| !! | CAACCATTTATTTTCCCCGG+CGG | + | chr1.3:9520576-9520595 | MS.gene71481:CDS | 45.0% |
| !! | GCTGATGAGAAGCATCATGT+CGG | + | chr1.3:9520834-9520853 | MS.gene71481:CDS | 45.0% |
| !! | AAAATATTCATTAAATAATT+CGG | + | chr1.3:9520980-9520999 | MS.gene71481:intron | 5.0% |
| AACTCCAGCTCTATTTCCGG+AGG | - | chr1.3:9520650-9520669 | None:intergenic | 50.0% | |
| AGCTCTATTTCCGGAGGAGA+AGG | - | chr1.3:9520644-9520663 | None:intergenic | 50.0% | |
| ATGATTGCAGCCAAAGCCAG+AGG | + | chr1.3:9520762-9520781 | MS.gene71481:intron | 50.0% | |
| CAAGCCAACCTCCAAGATTC+AGG | - | chr1.3:9522393-9522412 | None:intergenic | 50.0% | |
| CGCCGGGGAAAATAAATGGT+TGG | - | chr1.3:9520578-9520597 | None:intergenic | 50.0% | |
| TAGCCTCCCTTTAGCCTATG+GGG | - | chr1.3:9522817-9522836 | None:intergenic | 50.0% | |
| TGATTGCAGCCAAAGCCAGA+GGG | + | chr1.3:9520763-9520782 | MS.gene71481:intron | 50.0% | |
| TTCTCCTCCGGAAATAGAGC+TGG | + | chr1.3:9520643-9520662 | MS.gene71481:CDS | 50.0% | |
| ! | GATAGGCCTTTTAGCCCCAT+AGG | + | chr1.3:9522800-9522819 | MS.gene71481:intron | 50.0% |
| !! | AAGTTGATGAACTGCGGTGG+AGG | + | chr1.3:9521633-9521652 | MS.gene71481:CDS | 50.0% |
| !! | AGTTGATGAACTGCGGTGGA+GGG | + | chr1.3:9521634-9521653 | MS.gene71481:CDS | 50.0% |
| !! | CAGGGGAAGTTGATGAACTG+CGG | + | chr1.3:9521627-9521646 | MS.gene71481:intron | 50.0% |
| AGCCAAAGCCAGAGGGTGAT+GGG | + | chr1.3:9520770-9520789 | MS.gene71481:intron | 55.0% | |
| AGGACATAAGCCACACGCGA+TGG | + | chr1.3:9522775-9522794 | MS.gene71481:intron | 55.0% | |
| CTGCGGAACTTGCATAGTCG+AGG | + | chr1.3:9521662-9521681 | MS.gene71481:CDS | 55.0% | |
| GCCTGAATCTCCTTCTCCTC+CGG | + | chr1.3:9520631-9520650 | MS.gene71481:CDS | 55.0% | |
| TAGCCCCATAGGCTAAAGGG+AGG | + | chr1.3:9522811-9522830 | MS.gene71481:intron | 55.0% | |
| TCCGGAGGAGAAGGAGATTC+AGG | - | chr1.3:9520635-9520654 | None:intergenic | 55.0% | |
| TCGCCGCCGGGGAAAATAAA+TGG | - | chr1.3:9520582-9520601 | None:intergenic | 55.0% | |
| TGAACTCGAGTCTGCCACAC+CGG | - | chr1.3:9522871-9522890 | None:intergenic | 55.0% | |
| TTGATGAACTGCGGTGGAGG+GGG | + | chr1.3:9521636-9521655 | MS.gene71481:CDS | 55.0% | |
| ! | GTTGATGAACTGCGGTGGAG+GGG | + | chr1.3:9521635-9521654 | MS.gene71481:CDS | 55.0% |
| !! | AGAGGGTGATGGGTCGTTTC+CGG | + | chr1.3:9520780-9520799 | MS.gene71481:CDS | 55.0% |
| !! | GGGAAGTTGATGAACTGCGG+TGG | + | chr1.3:9521630-9521649 | MS.gene71481:CDS | 55.0% |
| AAACTGAGTTCGGTCGCCGC+CGG | - | chr1.3:9520595-9520614 | None:intergenic | 60.0% | |
| ACACCAGTTCCACTCACCGC+CGG | + | chr1.3:9520542-9520561 | MS.gene71481:CDS | 60.0% | |
| AGCCACACGCGATGGTCGAT+AGG | + | chr1.3:9522783-9522802 | MS.gene71481:intron | 60.0% | |
| CAGCCAAAGCCAGAGGGTGA+TGG | + | chr1.3:9520769-9520788 | MS.gene71481:intron | 60.0% | |
| GGAAACGACCCATCACCCTC+TGG | - | chr1.3:9520781-9520800 | None:intergenic | 60.0% | |
| GGTTGGATTCCGGTTACCGG+CGG | - | chr1.3:9520561-9520580 | None:intergenic | 60.0% | |
| TTACCGGCGGTGAGTGGAAC+TGG | - | chr1.3:9520548-9520567 | None:intergenic | 60.0% | |
| TTCCACTCACCGCCGGTAAC+CGG | + | chr1.3:9520549-9520568 | MS.gene71481:CDS | 60.0% | |
| ! | GACCCATCACCCTCTGGCTT+TGG | - | chr1.3:9520775-9520794 | None:intergenic | 60.0% |
| AACTGAGTTCGGTCGCCGCC+GGG | - | chr1.3:9520594-9520613 | None:intergenic | 65.0% | |
| GGCCTATCGACCATCGCGTG+TGG | - | chr1.3:9522788-9522807 | None:intergenic | 65.0% | |
| TTCCGGTTACCGGCGGTGAG+TGG | - | chr1.3:9520554-9520573 | None:intergenic | 65.0% | |
| !! | GGGTGATGGGTCGTTTCCGG+TGG | + | chr1.3:9520783-9520802 | MS.gene71481:CDS | 65.0% |
| ACTGAGTTCGGTCGCCGCCG+GGG | - | chr1.3:9520593-9520612 | None:intergenic | 70.0% | |
| TGCGGTGGAGGGGGTAGCTG+CGG | + | chr1.3:9521645-9521664 | MS.gene71481:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 9520518 | 9523304 | 9520518 | ID=MS.gene71481 |
| chr1.3 | mRNA | 9520518 | 9523304 | 9520518 | ID=MS.gene71481.t1;Parent=MS.gene71481 |
| chr1.3 | exon | 9520518 | 9520676 | 9520518 | ID=MS.gene71481.t1.exon1;Parent=MS.gene71481.t1 |
| chr1.3 | CDS | 9520518 | 9520676 | 9520518 | ID=cds.MS.gene71481.t1;Parent=MS.gene71481.t1 |
| chr1.3 | exon | 9520772 | 9520885 | 9520772 | ID=MS.gene71481.t1.exon2;Parent=MS.gene71481.t1 |
| chr1.3 | CDS | 9520772 | 9520885 | 9520772 | ID=cds.MS.gene71481.t1;Parent=MS.gene71481.t1 |
| chr1.3 | exon | 9521630 | 9521683 | 9521630 | ID=MS.gene71481.t1.exon3;Parent=MS.gene71481.t1 |
| chr1.3 | CDS | 9521630 | 9521683 | 9521630 | ID=cds.MS.gene71481.t1;Parent=MS.gene71481.t1 |
| chr1.3 | exon | 9521898 | 9521960 | 9521898 | ID=MS.gene71481.t1.exon4;Parent=MS.gene71481.t1 |
| chr1.3 | CDS | 9521898 | 9521960 | 9521898 | ID=cds.MS.gene71481.t1;Parent=MS.gene71481.t1 |
| chr1.3 | exon | 9522387 | 9522449 | 9522387 | ID=MS.gene71481.t1.exon5;Parent=MS.gene71481.t1 |
| chr1.3 | CDS | 9522387 | 9522449 | 9522387 | ID=cds.MS.gene71481.t1;Parent=MS.gene71481.t1 |
| chr1.3 | exon | 9523269 | 9523304 | 9523269 | ID=MS.gene71481.t1.exon6;Parent=MS.gene71481.t1 |
| chr1.3 | CDS | 9523269 | 9523304 | 9523269 | ID=cds.MS.gene71481.t1;Parent=MS.gene71481.t1 |
| Gene Sequence |
| Protein sequence |
