Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71696.t1 | XP_003603744.1 | 90.8 | 273 | 25 | 0 | 13 | 285 | 1 | 273 | 2.10E-140 | 508.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71696.t1 | O81769 | 75.7 | 272 | 65 | 1 | 13 | 283 | 1 | 272 | 6.4e-122 | 438.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71696.t1 | G7J4Q4 | 90.8 | 273 | 25 | 0 | 13 | 285 | 1 | 273 | 1.5e-140 | 508.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene71696 | MS.gene85931 | PPI |
MS.gene71696 | MS.gene86968 | PPI |
MS.gene50211 | MS.gene71696 | PPI |
MS.gene71696 | MS.gene009798 | PPI |
MS.gene71696 | MS.gene56983 | PPI |
MS.gene71696 | MS.gene83565 | PPI |
MS.gene71696 | MS.gene067444 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71696.t1 | MTR_3g113750 | 90.842 | 273 | 25 | 0 | 13 | 285 | 1 | 273 | 0.0 | 521 |
MS.gene71696.t1 | MTR_1g107520 | 92.121 | 165 | 9 | 1 | 13 | 177 | 1 | 161 | 6.34e-107 | 308 |
MS.gene71696.t1 | MTR_3g114210 | 68.919 | 148 | 37 | 3 | 43 | 181 | 1 | 148 | 8.97e-58 | 182 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71696.t1 | AT4G31790 | 75.182 | 274 | 67 | 1 | 13 | 285 | 1 | 274 | 9.59e-161 | 448 |
MS.gene71696.t1 | AT4G31790 | 75.182 | 274 | 67 | 1 | 13 | 285 | 1 | 274 | 9.59e-161 | 448 |
Find 69 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGCTACAGTTGATTGATTT+TGG | 0.122944 | 1.1:-77230305 | MS.gene71696:CDS |
TTGCTATGGTTACAGATATT+AGG | 0.197130 | 1.1:-77231180 | MS.gene71696:intron |
ATGTTATACATAATCGGTTT+AGG | 0.222248 | 1.1:-77234081 | MS.gene71696:CDS |
CTTCACACACTTTGCTTGTT+AGG | 0.224154 | 1.1:-77233513 | MS.gene71696:intron |
TGTGTTGATCGTCATGTATC+TGG | 0.257878 | 1.1:+77230852 | None:intergenic |
TGTTATACATAATCGGTTTA+GGG | 0.275650 | 1.1:-77234080 | MS.gene71696:CDS |
CATGTTGCTTTCCTTGTTGT+TGG | 0.290249 | 1.1:-77233841 | MS.gene71696:CDS |
TGCTATGGTTACAGATATTA+GGG | 0.304377 | 1.1:-77231179 | MS.gene71696:intron |
CTTGTTGTTGGTGACCCTTT+TGG | 0.307530 | 1.1:-77233829 | MS.gene71696:CDS |
TACATAATCGGTTTAGGGTT+GGG | 0.353222 | 1.1:-77234075 | MS.gene71696:CDS |
CATGTATCTGGGTGGTTCAT+AGG | 0.357827 | 1.1:+77230864 | None:intergenic |
GGTTTGCAGCTATATCGTTA+TGG | 0.358551 | 1.1:-77233621 | MS.gene71696:CDS |
CTGTAGCTGCTTCATTGTTC+CGG | 0.365688 | 1.1:+77230319 | None:intergenic |
GTTTGCAGCTATATCGTTAT+GGG | 0.367093 | 1.1:-77233620 | MS.gene71696:CDS |
TTGCATTGCCTAGTCATAAC+AGG | 0.382182 | 1.1:-77230275 | MS.gene71696:CDS |
TACACTTCTCTTCTCTCCTT+CGG | 0.382807 | 1.1:-77233982 | MS.gene71696:CDS |
GCTTCTGTTATGAATGCAAT+TGG | 0.383096 | 1.1:-77233651 | MS.gene71696:CDS |
CACAGCCATTGACCAGCTAT+TGG | 0.391767 | 1.1:-77230833 | MS.gene71696:CDS |
TTCTCTATCTGCAAGTGTAA+TGG | 0.397647 | 1.1:+77233912 | None:intergenic |
AATAGCTTGTAAACCTTTGA+GGG | 0.412690 | 1.1:+77234035 | None:intergenic |
AACCTTTGAGGGTGATATCT+TGG | 0.414105 | 1.1:+77234046 | None:intergenic |
GAATAGCTTGTAAACCTTTG+AGG | 0.424343 | 1.1:+77234034 | None:intergenic |
AACAGGCAAGACCCATCCTT+TGG | 0.449566 | 1.1:-77230258 | MS.gene71696:CDS |
TCCTTTGGAGGAAGAAATGC+TGG | 0.451222 | 1.1:-77230243 | MS.gene71696:CDS |
TACACTTGCAGATAGAGAAA+TGG | 0.452546 | 1.1:-77233908 | MS.gene71696:CDS |
TCCTTCGGTCTCTCTTCAAA+CGG | 0.456224 | 1.1:-77233967 | MS.gene71696:CDS |
ATGAATGCAATTGGGATTTG+TGG | 0.467099 | 1.1:-77233642 | MS.gene71696:CDS |
CTGAAGATACTGAGTGTGTT+GGG | 0.467169 | 1.1:-77230379 | MS.gene71696:CDS |
TGCTGGATTTCTACAGATGC+AGG | 0.472871 | 1.1:-77230226 | MS.gene71696:CDS |
AACATGAGAAAGATGAGCTT+GGG | 0.476125 | 1.1:+77233858 | None:intergenic |
TAGTAGCATACGTACCCAAA+AGG | 0.476909 | 1.1:+77233814 | None:intergenic |
CTGAGTGTGTTGGGTTTGCT+CGG | 0.479514 | 1.1:-77230370 | MS.gene71696:CDS |
TCTCCATGTCTCGGTAAAGA+AGG | 0.483323 | 1.1:+77233581 | None:intergenic |
TGTGTTGGGTTTGCTCGGAT+TGG | 0.491487 | 1.1:-77230365 | MS.gene71696:CDS |
GCATTTCTTCCTCCAAAGGA+TGG | 0.492628 | 1.1:+77230246 | None:intergenic |
ATACATAATCGGTTTAGGGT+TGG | 0.507394 | 1.1:-77234076 | MS.gene71696:CDS |
CTTCTGTTATGAATGCAATT+GGG | 0.511747 | 1.1:-77233650 | MS.gene71696:CDS |
TGTTGTTCGAGCAAAGAAGA+TGG | 0.512659 | 1.1:-77233700 | MS.gene71696:CDS |
CAACATGAGAAAGATGAGCT+TGG | 0.518904 | 1.1:+77233857 | None:intergenic |
CTTGTGCAATCTCCAATAGC+TGG | 0.526744 | 1.1:+77230821 | None:intergenic |
CCACGCTGGAATCTTTGTGC+AGG | 0.532208 | 1.1:-77231147 | MS.gene71696:intron |
TAAATGCGACAAAGTTTACA+TGG | 0.533120 | 1.1:-77234010 | MS.gene71696:CDS |
GTGTTGATCGTCATGTATCT+GGG | 0.540891 | 1.1:+77230853 | None:intergenic |
TCCAGCATTTCTTCCTCCAA+AGG | 0.541129 | 1.1:+77230242 | None:intergenic |
GCACAAGCGCATGAAGAAGC+TGG | 0.545697 | 1.1:-77230805 | MS.gene71696:intron |
CATTTCTTCCTCCAAAGGAT+GGG | 0.556386 | 1.1:+77230247 | None:intergenic |
AGTAGCATACGTACCCAAAA+GGG | 0.556867 | 1.1:+77233815 | None:intergenic |
GTTGTTCGAGCAAAGAAGAT+GGG | 0.566000 | 1.1:-77233699 | MS.gene71696:CDS |
AGGCAAGACCCATCCTTTGG+AGG | 0.566323 | 1.1:-77230255 | MS.gene71696:CDS |
AATCTCCAATAGCTGGTCAA+TGG | 0.569611 | 1.1:+77230828 | None:intergenic |
CTCCATGTCTCGGTAAAGAA+GGG | 0.572832 | 1.1:+77233582 | None:intergenic |
GAAGATCAGAAGGTAGTAGC+CGG | 0.574536 | 1.1:-77230338 | MS.gene71696:CDS |
TACCCTTCTTTACCGAGACA+TGG | 0.575922 | 1.1:-77233584 | MS.gene71696:CDS |
TCTGAAGATACTGAGTGTGT+TGG | 0.579919 | 1.1:-77230380 | MS.gene71696:CDS |
ACACTCAGTATCTTCAGAGT+AGG | 0.583085 | 1.1:+77230385 | None:intergenic |
GGTTACAGATATTAGGGTGA+AGG | 0.584730 | 1.1:-77231173 | MS.gene71696:intron |
GCCGTTTGAAGAGAGACCGA+AGG | 0.585888 | 1.1:+77233966 | None:intergenic |
TTTGATATGACTAGTCAAGA+AGG | 0.586585 | 1.1:-77234123 | None:intergenic |
GGGTCTTGCCTGTTATGACT+AGG | 0.587259 | 1.1:+77230267 | None:intergenic |
GCTATCAGGTCTCCATGTCT+CGG | 0.598618 | 1.1:+77233572 | None:intergenic |
TAGGGTGAAGGAGCCCACGC+TGG | 0.600425 | 1.1:-77231161 | MS.gene71696:CDS |
GACCAAGATATCACCCTCAA+AGG | 0.601432 | 1.1:-77234048 | MS.gene71696:CDS |
GATTGGAAGTGAAGATCAGA+AGG | 0.607232 | 1.1:-77230348 | MS.gene71696:CDS |
CTGCACAAAGATTCCAGCGT+GGG | 0.607705 | 1.1:+77231148 | None:intergenic |
CAAAAGGGTCACCAACAACA+AGG | 0.612707 | 1.1:+77233830 | None:intergenic |
TTTGCAGCTATATCGTTATG+GGG | 0.661053 | 1.1:-77233619 | MS.gene71696:CDS |
GTTATGACTAGGCAATGCAA+AGG | 0.678397 | 1.1:+77230278 | None:intergenic |
TTGATCGTCATGTATCTGGG+TGG | 0.755594 | 1.1:+77230856 | None:intergenic |
CCTGCACAAAGATTCCAGCG+TGG | 0.765961 | 1.1:+77231147 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATTATTAAAATGTGATTT+AGG | - | chr1.1:77232417-77232436 | MS.gene71696:intron | 10.0% |
!!! | AAACTTTTTTTGTAAATATT+TGG | - | chr1.1:77232381-77232400 | MS.gene71696:intron | 10.0% |
!!! | AGATTTATATAAATTTTCTA+AGG | - | chr1.1:77232632-77232651 | MS.gene71696:intron | 10.0% |
!! | AGAAAAATGTTATACATAAT+CGG | - | chr1.1:77230250-77230269 | MS.gene71696:CDS | 15.0% |
!! | ATATATTAAATCGATAGATA+AGG | + | chr1.1:77231828-77231847 | None:intergenic | 15.0% |
!! | ATGGATAAAAAATCAATTAA+TGG | + | chr1.1:77231537-77231556 | None:intergenic | 15.0% |
!! | TATTAATTAATTAAGGACTA+AGG | - | chr1.1:77231180-77231199 | MS.gene71696:intron | 15.0% |
!! | TTGTGCATATTAATTAATTA+AGG | - | chr1.1:77231173-77231192 | MS.gene71696:intron | 15.0% |
!!! | ATTTTAACAAATTGCTATAA+CGG | + | chr1.1:77231037-77231056 | None:intergenic | 15.0% |
!!! | ATTTTTAAAGCTTCAAAATT+GGG | - | chr1.1:77232523-77232542 | MS.gene71696:intron | 15.0% |
!!! | GTAATAATATCTAAGATATA+TGG | + | chr1.1:77231764-77231783 | None:intergenic | 15.0% |
!!! | TACATATTTGAAATTTGATA+TGG | - | chr1.1:77233674-77233693 | MS.gene71696:CDS | 15.0% |
!! | AATAATTAAAATGTTGAAGC+AGG | + | chr1.1:77230559-77230578 | None:intergenic | 20.0% |
!! | AATATTGTAAGAAAACACAT+TGG | + | chr1.1:77233822-77233841 | None:intergenic | 20.0% |
!! | ACATAATCAACAGAAAATAA+AGG | + | chr1.1:77233233-77233252 | None:intergenic | 20.0% |
!! | ATAATTAAAATGTTGAAGCA+GGG | + | chr1.1:77230558-77230577 | None:intergenic | 20.0% |
!! | ATAGATAAGGTTAATAAGTA+AGG | + | chr1.1:77231815-77231834 | None:intergenic | 20.0% |
!! | ATATAATTTACACTTTGCTA+TGG | - | chr1.1:77233143-77233162 | MS.gene71696:intron | 20.0% |
!! | CACAAACTTTATATGTATTA+CGG | - | chr1.1:77231383-77231402 | MS.gene71696:intron | 20.0% |
!! | CTAGGAAAAAAAAAAAAGAA+GGG | - | chr1.1:77233794-77233813 | MS.gene71696:intron | 20.0% |
!! | GTCAAAAAATAATACTATGT+GGG | + | chr1.1:77231488-77231507 | None:intergenic | 20.0% |
!! | GTTAAAATTCTACAATGATA+TGG | - | chr1.1:77231049-77231068 | MS.gene71696:intron | 20.0% |
!! | TAGAAGAAATAAAGGAAAAT+GGG | + | chr1.1:77232958-77232977 | None:intergenic | 20.0% |
!! | TCTAGGAAAAAAAAAAAAGA+AGG | - | chr1.1:77233793-77233812 | MS.gene71696:intron | 20.0% |
!! | TGTCAAAAAATAATACTATG+TGG | + | chr1.1:77231489-77231508 | None:intergenic | 20.0% |
!! | TTTAATAAGACAAGTGAATA+TGG | + | chr1.1:77231442-77231461 | None:intergenic | 20.0% |
!!! | ATACTATATCCATTTTTTCA+AGG | - | chr1.1:77232354-77232373 | MS.gene71696:intron | 20.0% |
!!! | ATTCAACAAAATCGAATTTT+CGG | - | chr1.1:77230800-77230819 | MS.gene71696:intron | 20.0% |
!!! | CGAAAAACATCAATTTTATA+AGG | + | chr1.1:77232196-77232215 | None:intergenic | 20.0% |
!!! | GATTTTTAAAGCTTCAAAAT+TGG | - | chr1.1:77232522-77232541 | MS.gene71696:intron | 20.0% |
!!! | TATTTTTTGGTTCATTTAAG+AGG | - | chr1.1:77233442-77233461 | MS.gene71696:intron | 20.0% |
!!! | TCAATTATCACTTTAAAATG+AGG | + | chr1.1:77232151-77232170 | None:intergenic | 20.0% |
!!! | TTCTTTTTTTTTTTTCCTAG+AGG | + | chr1.1:77233794-77233813 | None:intergenic | 20.0% |
! | AAAATAATACTATGTGGGTA+TGG | + | chr1.1:77231483-77231502 | None:intergenic | 25.0% |
! | AACTGAAAATGTGCTTATTA+TGG | + | chr1.1:77233726-77233745 | None:intergenic | 25.0% |
! | AATAGAAGAAATGCAATAAG+CGG | - | chr1.1:77231407-77231426 | MS.gene71696:intron | 25.0% |
! | ATAAGTCAGTTGTATTAGAA+AGG | + | chr1.1:77231792-77231811 | None:intergenic | 25.0% |
! | ATACTTCTCAGAATATAAGA+AGG | + | chr1.1:77233340-77233359 | None:intergenic | 25.0% |
! | GAACTAAAAAATTGTATTGG+AGG | + | chr1.1:77232877-77232896 | None:intergenic | 25.0% |
! | GAGGAACTAAAAAATTGTAT+TGG | + | chr1.1:77232880-77232899 | None:intergenic | 25.0% |
! | GTAGAAGAAATAAAGGAAAA+TGG | + | chr1.1:77232959-77232978 | None:intergenic | 25.0% |
! | TAAAAAATTGTATTGGAGGA+GGG | + | chr1.1:77232873-77232892 | None:intergenic | 25.0% |
! | TCCAATCTAGAAAAACTATA+CGG | - | chr1.1:77230397-77230416 | MS.gene71696:intron | 25.0% |
! | TGATTATGTAGTTTCTTTAG+TGG | - | chr1.1:77233244-77233263 | MS.gene71696:intron | 25.0% |
! | TTGAGATTAAGAATAGCATA+AGG | + | chr1.1:77230858-77230877 | None:intergenic | 25.0% |
!! | AGCGATATTTTCTTATTATC+CGG | - | chr1.1:77233370-77233389 | MS.gene71696:intron | 25.0% |
!! | AGTTTTTCTCAACAAAGAAA+AGG | + | chr1.1:77233122-77233141 | None:intergenic | 25.0% |
!! | ATGTTATACATAATCGGTTT+AGG | - | chr1.1:77230256-77230275 | MS.gene71696:CDS | 25.0% |
!! | TAATGGACAGAATAATAGTA+TGG | + | chr1.1:77231520-77231539 | None:intergenic | 25.0% |
!! | TGTTATACATAATCGGTTTA+GGG | - | chr1.1:77230257-77230276 | MS.gene71696:CDS | 25.0% |
!! | TTTAAGACAAAGGAAAAATG+AGG | + | chr1.1:77231582-77231601 | None:intergenic | 25.0% |
!! | TTTGAAACAATTGAGCATAT+TGG | + | chr1.1:77230881-77230900 | None:intergenic | 25.0% |
!! | TTTTCGTGTATGTCTTTAAT+TGG | - | chr1.1:77232210-77232229 | MS.gene71696:intron | 25.0% |
!!! | AAATTTTCTAAGGCTTTGTT+TGG | - | chr1.1:77232642-77232661 | MS.gene71696:intron | 25.0% |
!!! | AACAGATATTTTGATCAAAG+AGG | + | chr1.1:77231234-77231253 | None:intergenic | 25.0% |
!!! | AAGTTTCTCCTTTTTTTCAT+TGG | + | chr1.1:77231209-77231228 | None:intergenic | 25.0% |
!!! | AATTTTCTAAGGCTTTGTTT+GGG | - | chr1.1:77232643-77232662 | MS.gene71696:intron | 25.0% |
!!! | CTTATTTTTCTTATGCTACA+TGG | - | chr1.1:77232112-77232131 | MS.gene71696:intron | 25.0% |
!!! | TTATATTCTGAGAAGTATCA+TGG | - | chr1.1:77233342-77233361 | MS.gene71696:intron | 25.0% |
!!! | TTATTTTTGTTTTCTTCGCA+GGG | - | chr1.1:77230595-77230614 | MS.gene71696:intron | 25.0% |
ACAAGAAAATGCATTGAATC+TGG | - | chr1.1:77230908-77230927 | MS.gene71696:intron | 30.0% | |
ACTGTGAGAATAAACATTTC+TGG | - | chr1.1:77231256-77231275 | MS.gene71696:intron | 30.0% | |
AGAAAAACCATTGAGCTTTA+TGG | - | chr1.1:77232293-77232312 | MS.gene71696:intron | 30.0% | |
AGAAATAAAGGAAAATGGGA+AGG | + | chr1.1:77232954-77232973 | None:intergenic | 30.0% | |
AGTATATTGAACAGCATTGT+AGG | + | chr1.1:77231129-77231148 | None:intergenic | 30.0% | |
ATGTAGTTTCTTTAGTGGTA+TGG | - | chr1.1:77233249-77233268 | MS.gene71696:intron | 30.0% | |
CTAAAAAATTGTATTGGAGG+AGG | + | chr1.1:77232874-77232893 | None:intergenic | 30.0% | |
CTTCTGTTATGAATGCAATT+GGG | - | chr1.1:77230687-77230706 | MS.gene71696:intron | 30.0% | |
GAAGGGAATAAATTAAGTGT+CGG | + | chr1.1:77231015-77231034 | None:intergenic | 30.0% | |
GTGCAAAATATGAGGAAAAA+TGG | - | chr1.1:77232701-77232720 | MS.gene71696:intron | 30.0% | |
TAAATGCGACAAAGTTTACA+TGG | - | chr1.1:77230327-77230346 | MS.gene71696:CDS | 30.0% | |
TAAGGCTTCCAATGAAAAAA+AGG | - | chr1.1:77231198-77231217 | MS.gene71696:intron | 30.0% | |
TCATACAATTACTCCATGAA+TGG | + | chr1.1:77231872-77231891 | None:intergenic | 30.0% | |
TGAGCAAGTAGAAGAAATAA+AGG | + | chr1.1:77232966-77232985 | None:intergenic | 30.0% | |
TGCTATGGTTACAGATATTA+GGG | - | chr1.1:77233158-77233177 | MS.gene71696:intron | 30.0% | |
TGTAGTTTCTTTAGTGGTAT+GGG | - | chr1.1:77233250-77233269 | MS.gene71696:intron | 30.0% | |
TTGCTATGGTTACAGATATT+AGG | - | chr1.1:77233157-77233176 | MS.gene71696:intron | 30.0% | |
! | AACAAATTGCTATAACGGAA+GGG | + | chr1.1:77231032-77231051 | None:intergenic | 30.0% |
! | AATAGCTTGTAAACCTTTGA+GGG | + | chr1.1:77230305-77230324 | None:intergenic | 30.0% |
! | ACCGTATAGTTTTTCTAGAT+TGG | + | chr1.1:77230401-77230420 | None:intergenic | 30.0% |
! | AGTTTTCAGCCTTGAAAAAA+TGG | + | chr1.1:77232366-77232385 | None:intergenic | 30.0% |
! | ATAGTTTTTCTAGATTGGAG+AGG | + | chr1.1:77230396-77230415 | None:intergenic | 30.0% |
! | ATCTTTTGATAGAAGCTATC+AGG | + | chr1.1:77230782-77230801 | None:intergenic | 30.0% |
! | GTTTGAAACTTCAAAGAGTA+TGG | + | chr1.1:77231608-77231627 | None:intergenic | 30.0% |
! | GTTTTTCTTTCATTTGCACA+GGG | + | chr1.1:77232281-77232300 | None:intergenic | 30.0% |
! | TAACAAATTGCTATAACGGA+AGG | + | chr1.1:77231033-77231052 | None:intergenic | 30.0% |
! | TGTCTTTAATTGGTTCAGTT+TGG | - | chr1.1:77232220-77232239 | MS.gene71696:intron | 30.0% |
!! | AATTAGATGAGAGCATTAGA+GGG | - | chr1.1:77233060-77233079 | MS.gene71696:intron | 30.0% |
!! | ACAAGTATTGTGTTTTGAGT+TGG | + | chr1.1:77232587-77232606 | None:intergenic | 30.0% |
!! | GTTAAGTTGTTTTCCATTCA+TGG | - | chr1.1:77231856-77231875 | MS.gene71696:intron | 30.0% |
!! | TTCTTTAGAAAGGGTACTAA+CGG | - | chr1.1:77231092-77231111 | MS.gene71696:intron | 30.0% |
!!! | CTTATTTTTGTTTTCTTCGC+AGG | - | chr1.1:77230594-77230613 | MS.gene71696:intron | 30.0% |
!!! | GAAGTTTTGAATTTTCTCCT+CGG | + | chr1.1:77232024-77232043 | None:intergenic | 30.0% |
!!! | TTTTTTAGTTCCTCCAAATG+AGG | - | chr1.1:77232886-77232905 | MS.gene71696:intron | 30.0% |
AACATGAGAAAGATGAGCTT+GGG | + | chr1.1:77230482-77230501 | None:intergenic | 35.0% | |
AATAAAGGAAAATGGGAAGG+AGG | + | chr1.1:77232951-77232970 | None:intergenic | 35.0% | |
AATACAAAACCCTCCTCATT+TGG | + | chr1.1:77232902-77232921 | None:intergenic | 35.0% | |
ACAATGATATGGCCTATAGA+GGG | - | chr1.1:77231060-77231079 | MS.gene71696:intron | 35.0% | |
AGACAAAGGAAAAATGAGGA+AGG | + | chr1.1:77231578-77231597 | None:intergenic | 35.0% | |
ATAAAGGAAAATGGGAAGGA+GGG | + | chr1.1:77232950-77232969 | None:intergenic | 35.0% | |
ATGAATGCAATTGGGATTTG+TGG | - | chr1.1:77230695-77230714 | MS.gene71696:intron | 35.0% | |
CATTGAGTCATTGACAAAAC+CGG | + | chr1.1:77233392-77233411 | None:intergenic | 35.0% | |
CTCCATGTTTATCAGATAGA+TGG | - | chr1.1:77231287-77231306 | MS.gene71696:intron | 35.0% | |
GCTTCTGTTATGAATGCAAT+TGG | - | chr1.1:77230686-77230705 | MS.gene71696:intron | 35.0% | |
GTCAGTTGTATTAGAAAGGA+AGG | + | chr1.1:77231788-77231807 | None:intergenic | 35.0% | |
GTCCATCTATCTGATAAACA+TGG | + | chr1.1:77231292-77231311 | None:intergenic | 35.0% | |
GTTTGCAGCTATATCGTTAT+GGG | - | chr1.1:77230717-77230736 | MS.gene71696:intron | 35.0% | |
TACAATGATATGGCCTATAG+AGG | - | chr1.1:77231059-77231078 | MS.gene71696:intron | 35.0% | |
TACACTTGCAGATAGAGAAA+TGG | - | chr1.1:77230429-77230448 | MS.gene71696:intron | 35.0% | |
TGAACAATTGAAGTTCCTCT+AGG | - | chr1.1:77233776-77233795 | MS.gene71696:intron | 35.0% | |
TGGTAAATTTCTGACAGACA+AGG | + | chr1.1:77233706-77233725 | None:intergenic | 35.0% | |
TTCTCTATCTGCAAGTGTAA+TGG | + | chr1.1:77230428-77230447 | None:intergenic | 35.0% | |
TTGAACGTTTACATCACTCT+AGG | - | chr1.1:77233564-77233583 | MS.gene71696:CDS | 35.0% | |
TTTATCGATCGATCTTCCAA+TGG | + | chr1.1:77231648-77231667 | None:intergenic | 35.0% | |
TTTGCAGCTATATCGTTATG+GGG | - | chr1.1:77230718-77230737 | MS.gene71696:intron | 35.0% | |
! | ATACATAATCGGTTTAGGGT+TGG | - | chr1.1:77230261-77230280 | MS.gene71696:CDS | 35.0% |
! | GAATAGCTTGTAAACCTTTG+AGG | + | chr1.1:77230306-77230325 | None:intergenic | 35.0% |
! | GGTTTTTCTTTCATTTGCAC+AGG | + | chr1.1:77232282-77232301 | None:intergenic | 35.0% |
! | TACATAATCGGTTTAGGGTT+GGG | - | chr1.1:77230262-77230281 | MS.gene71696:CDS | 35.0% |
!! | ATTAGATGAGAGCATTAGAG+GGG | - | chr1.1:77233061-77233080 | MS.gene71696:intron | 35.0% |
!! | CAGCTACAGTTGATTGATTT+TGG | - | chr1.1:77234032-77234051 | MS.gene71696:CDS | 35.0% |
!! | CTAGGCATGAATTTCAAGTT+TGG | - | chr1.1:77233582-77233601 | MS.gene71696:CDS | 35.0% |
!! | GAATTAGATGAGAGCATTAG+AGG | - | chr1.1:77233059-77233078 | MS.gene71696:intron | 35.0% |
!! | TGTCGGTGTTGTTAAATAGT+GGG | + | chr1.1:77230998-77231017 | None:intergenic | 35.0% |
!!! | AGTATGGCGTTTTAAGACAA+AGG | + | chr1.1:77231592-77231611 | None:intergenic | 35.0% |
AAAATGAGGAAGGTGGAGAA+AGG | + | chr1.1:77231568-77231587 | None:intergenic | 40.0% | |
AAATGAGGAAGGTGGAGAAA+GGG | + | chr1.1:77231567-77231586 | None:intergenic | 40.0% | |
AATCTCCAATAGCTGGTCAA+TGG | + | chr1.1:77233512-77233531 | None:intergenic | 40.0% | |
ACACTCAGTATCTTCAGAGT+AGG | + | chr1.1:77233955-77233974 | None:intergenic | 40.0% | |
ACGTGTGATCAAGTATCACT+TGG | - | chr1.1:77231709-77231728 | MS.gene71696:intron | 40.0% | |
AGTAGCATACGTACCCAAAA+GGG | + | chr1.1:77230525-77230544 | None:intergenic | 40.0% | |
ATCTTCCAATGGTGAACAAG+TGG | + | chr1.1:77231637-77231656 | None:intergenic | 40.0% | |
CAAAGCCTAAGTGATTGTAC+TGG | - | chr1.1:77233034-77233053 | MS.gene71696:intron | 40.0% | |
CAAAGGAAAAATGAGGAAGG+TGG | + | chr1.1:77231575-77231594 | None:intergenic | 40.0% | |
CAACATGAGAAAGATGAGCT+TGG | + | chr1.1:77230483-77230502 | None:intergenic | 40.0% | |
CAAGTCACCATAAAGCTCAA+TGG | + | chr1.1:77232303-77232322 | None:intergenic | 40.0% | |
CAATGATATGGCCTATAGAG+GGG | - | chr1.1:77231061-77231080 | MS.gene71696:intron | 40.0% | |
CATTTCTTCCTCCAAAGGAT+GGG | + | chr1.1:77234093-77234112 | None:intergenic | 40.0% | |
CTGAAGATACTGAGTGTGTT+GGG | - | chr1.1:77233958-77233977 | MS.gene71696:CDS | 40.0% | |
CTTCACACACTTTGCTTGTT+AGG | - | chr1.1:77230824-77230843 | MS.gene71696:CDS | 40.0% | |
GATTGGAAGTGAAGATCAGA+AGG | - | chr1.1:77233989-77234008 | MS.gene71696:CDS | 40.0% | |
GGTTACAGATATTAGGGTGA+AGG | - | chr1.1:77233164-77233183 | MS.gene71696:intron | 40.0% | |
GGTTTGCAGCTATATCGTTA+TGG | - | chr1.1:77230716-77230735 | MS.gene71696:intron | 40.0% | |
GTTATGACTAGGCAATGCAA+AGG | + | chr1.1:77234062-77234081 | None:intergenic | 40.0% | |
GTTGTTCGAGCAAAGAAGAT+GGG | - | chr1.1:77230638-77230657 | MS.gene71696:intron | 40.0% | |
TACACTTCTCTTCTCTCCTT+CGG | - | chr1.1:77230355-77230374 | MS.gene71696:CDS | 40.0% | |
TAGTAGCATACGTACCCAAA+AGG | + | chr1.1:77230526-77230545 | None:intergenic | 40.0% | |
TCTGAAGATACTGAGTGTGT+TGG | - | chr1.1:77233957-77233976 | MS.gene71696:CDS | 40.0% | |
TGTTGTTCGAGCAAAGAAGA+TGG | - | chr1.1:77230637-77230656 | MS.gene71696:intron | 40.0% | |
TTAGTTCCTCCAAATGAGGA+GGG | - | chr1.1:77232890-77232909 | MS.gene71696:intron | 40.0% | |
TTCAGCCAGTACAATCACTT+AGG | + | chr1.1:77233042-77233061 | None:intergenic | 40.0% | |
TTGCATTGCCTAGTCATAAC+AGG | - | chr1.1:77234062-77234081 | MS.gene71696:CDS | 40.0% | |
! | AACCTTTGAGGGTGATATCT+TGG | + | chr1.1:77230294-77230313 | None:intergenic | 40.0% |
! | AAGGAAAGGAAAGGCTTTGA+GGG | - | chr1.1:77232678-77232697 | MS.gene71696:intron | 40.0% |
! | ATTGTATTGGAGGAGGGTTT+TGG | + | chr1.1:77232867-77232886 | None:intergenic | 40.0% |
! | CACACTTTGCTTGTTAGGTT+AGG | - | chr1.1:77230829-77230848 | MS.gene71696:CDS | 40.0% |
! | GCATCGTGGTTCTTTAGAAA+GGG | - | chr1.1:77231083-77231102 | MS.gene71696:intron | 40.0% |
! | GTGTTGATCGTCATGTATCT+GGG | + | chr1.1:77233487-77233506 | None:intergenic | 40.0% |
! | TGTGTTGATCGTCATGTATC+TGG | + | chr1.1:77233488-77233507 | None:intergenic | 40.0% |
! | TTGTATTGGAGGAGGGTTTT+GGG | + | chr1.1:77232866-77232885 | None:intergenic | 40.0% |
! | TTTAGTTCCTCCAAATGAGG+AGG | - | chr1.1:77232889-77232908 | MS.gene71696:intron | 40.0% |
! | TTTGAGGGGTGCAAAATATG+AGG | - | chr1.1:77232693-77232712 | MS.gene71696:intron | 40.0% |
!! | CATGTTGCTTTCCTTGTTGT+TGG | - | chr1.1:77230496-77230515 | MS.gene71696:intron | 40.0% |
!! | GTGTCGGTGTTGTTAAATAG+TGG | + | chr1.1:77230999-77231018 | None:intergenic | 40.0% |
!! | TAAGGCTTTGTTTGGGAGTT+TGG | - | chr1.1:77232650-77232669 | MS.gene71696:intron | 40.0% |
!! | TGACTTGTTTGTTTGCATGG+TGG | - | chr1.1:77232316-77232335 | MS.gene71696:intron | 40.0% |
!! | TGGTGACTTGTTTGTTTGCA+TGG | - | chr1.1:77232313-77232332 | MS.gene71696:intron | 40.0% |
!! | TTAGGCTTTGTTTGCGAGTT+TGG | + | chr1.1:77233024-77233043 | None:intergenic | 40.0% |
!! | TTGAGTTGGTCAACACAAAC+AGG | + | chr1.1:77232573-77232592 | None:intergenic | 40.0% |
!!! | GTTTTTTTGTGCGCAGGAAA+TGG | - | chr1.1:77233612-77233631 | MS.gene71696:CDS | 40.0% |
!!! | TTATGCGTTTTTTTGTGCGC+AGG | - | chr1.1:77233606-77233625 | MS.gene71696:CDS | 40.0% |
!!! | TTGTTGTTGGTGACCCTTTT+GGG | - | chr1.1:77230509-77230528 | MS.gene71696:intron | 40.0% |
AAAATGGGAAGGAGGGCTTT+GGG | + | chr1.1:77232943-77232962 | None:intergenic | 45.0% | |
ACAAAACCCTCCTCATTTGG+AGG | + | chr1.1:77232899-77232918 | None:intergenic | 45.0% | |
CAAAAGGGTCACCAACAACA+AGG | + | chr1.1:77230510-77230529 | None:intergenic | 45.0% | |
CATGTATCTGGGTGGTTCAT+AGG | + | chr1.1:77233476-77233495 | None:intergenic | 45.0% | |
CATTCAGTGCAAACCACGAA+AGG | - | chr1.1:77231998-77232017 | MS.gene71696:intron | 45.0% | |
CTCCATGTCTCGGTAAAGAA+GGG | + | chr1.1:77230758-77230777 | None:intergenic | 45.0% | |
CTGTAGCTGCTTCATTGTTC+CGG | + | chr1.1:77234021-77234040 | None:intergenic | 45.0% | |
CTTGTGCAATCTCCAATAGC+TGG | + | chr1.1:77233519-77233538 | None:intergenic | 45.0% | |
GAAGATCAGAAGGTAGTAGC+CGG | - | chr1.1:77233999-77234018 | MS.gene71696:CDS | 45.0% | |
GAAGGAAAGGAAAGGCTTTG+AGG | - | chr1.1:77232677-77232696 | MS.gene71696:intron | 45.0% | |
GACCAAGATATCACCCTCAA+AGG | - | chr1.1:77230289-77230308 | MS.gene71696:CDS | 45.0% | |
GCATTTCTTCCTCCAAAGGA+TGG | + | chr1.1:77234094-77234113 | None:intergenic | 45.0% | |
TACCCTTCTTTACCGAGACA+TGG | - | chr1.1:77230753-77230772 | MS.gene71696:intron | 45.0% | |
TATCTTCAGAGTAGGCTGCA+AGG | + | chr1.1:77233947-77233966 | None:intergenic | 45.0% | |
TCCAGCATTTCTTCCTCCAA+AGG | + | chr1.1:77234098-77234117 | None:intergenic | 45.0% | |
TCCTTCGGTCTCTCTTCAAA+CGG | - | chr1.1:77230370-77230389 | MS.gene71696:CDS | 45.0% | |
TCTCCATGTCTCGGTAAAGA+AGG | + | chr1.1:77230759-77230778 | None:intergenic | 45.0% | |
TGCTGGATTTCTACAGATGC+AGG | - | chr1.1:77234111-77234130 | MS.gene71696:CDS | 45.0% | |
TTGATCGTCATGTATCTGGG+TGG | + | chr1.1:77233484-77233503 | None:intergenic | 45.0% | |
! | CGTGGTTTGCACTGAATGAA+AGG | + | chr1.1:77231996-77232015 | None:intergenic | 45.0% |
! | CTTTGTTTGCGAGTTTGGAG+GGG | + | chr1.1:77233019-77233038 | None:intergenic | 45.0% |
! | CTTTGTTTGGGAGTTTGGAG+GGG | - | chr1.1:77232655-77232674 | MS.gene71696:intron | 45.0% |
! | GGCATCGTGGTTCTTTAGAA+AGG | - | chr1.1:77231082-77231101 | MS.gene71696:intron | 45.0% |
! | GTATGGGTTGTGTGTTTCTC+TGG | - | chr1.1:77233266-77233285 | MS.gene71696:intron | 45.0% |
! | TCCTTTGGAGGAAGAAATGC+TGG | - | chr1.1:77234094-77234113 | MS.gene71696:CDS | 45.0% |
! | TGTATTGGAGGAGGGTTTTG+GGG | + | chr1.1:77232865-77232884 | None:intergenic | 45.0% |
!! | AGGAAAGGAAAGGCTTTGAG+GGG | - | chr1.1:77232679-77232698 | MS.gene71696:intron | 45.0% |
!! | GCTTTGTTTGCGAGTTTGGA+GGG | + | chr1.1:77233020-77233039 | None:intergenic | 45.0% |
!! | GCTTTGTTTGGGAGTTTGGA+GGG | - | chr1.1:77232654-77232673 | MS.gene71696:intron | 45.0% |
!!! | CTTGTTGTTGGTGACCCTTT+TGG | - | chr1.1:77230508-77230527 | MS.gene71696:intron | 45.0% |
!!! | GCACATTGGTTTTCTGGGAA+GGG | - | chr1.1:77233083-77233102 | MS.gene71696:intron | 45.0% |
!!! | TTTTCTGGGAAGGGTACTGA+AGG | - | chr1.1:77233092-77233111 | MS.gene71696:intron | 45.0% |
!!! | TTTTATTTATCTTTATTTTT+TGG | - | chr1.1:77233429-77233448 | MS.gene71696:intron | 5.0% |
AAATGGGAAGGAGGGCTTTG+GGG | + | chr1.1:77232942-77232961 | None:intergenic | 50.0% | |
AACAGGCAAGACCCATCCTT+TGG | - | chr1.1:77234079-77234098 | MS.gene71696:CDS | 50.0% | |
AGGGGAAGGCTTGGGAAAAA+AGG | + | chr1.1:77232991-77233010 | None:intergenic | 50.0% | |
CACAGCCATTGACCAGCTAT+TGG | - | chr1.1:77233504-77233523 | MS.gene71696:intron | 50.0% | |
CTGCACAAAGATTCCAGCGT+GGG | + | chr1.1:77233192-77233211 | None:intergenic | 50.0% | |
GAAAATGGGAAGGAGGGCTT+TGG | + | chr1.1:77232944-77232963 | None:intergenic | 50.0% | |
GCTATCAGGTCTCCATGTCT+CGG | + | chr1.1:77230768-77230787 | None:intergenic | 50.0% | |
GCTGGAATCTTTGTGCAGGT+TGG | - | chr1.1:77233194-77233213 | MS.gene71696:intron | 50.0% | |
GGGTCTTGCCTGTTATGACT+AGG | + | chr1.1:77234073-77234092 | None:intergenic | 50.0% | |
GTGGAGAAAGGGATCATGCA+TGG | + | chr1.1:77231556-77231575 | None:intergenic | 50.0% | |
TCGCTCCACTTGTTCACCAT+TGG | - | chr1.1:77231629-77231648 | MS.gene71696:intron | 50.0% | |
TTGGAGGGGAAGGAAAGGAA+AGG | - | chr1.1:77232669-77232688 | MS.gene71696:intron | 50.0% | |
TTTGCGAGTTTGGAGGGGAA+GGG | + | chr1.1:77233014-77233033 | None:intergenic | 50.0% | |
! | AGAGCATTAGAGGGGCACAT+TGG | - | chr1.1:77233069-77233088 | MS.gene71696:intron | 50.0% |
! | ATTTTCTCCTCGGCCTTTCG+TGG | + | chr1.1:77232014-77232033 | None:intergenic | 50.0% |
! | CTGAGTGTGTTGGGTTTGCT+CGG | - | chr1.1:77233967-77233986 | MS.gene71696:CDS | 50.0% |
! | TGTGTTGGGTTTGCTCGGAT+TGG | - | chr1.1:77233972-77233991 | MS.gene71696:CDS | 50.0% |
!! | GGCTTTGTTTGCGAGTTTGG+AGG | + | chr1.1:77233021-77233040 | None:intergenic | 50.0% |
!! | GGCTTTGTTTGGGAGTTTGG+AGG | - | chr1.1:77232653-77232672 | MS.gene71696:intron | 50.0% |
!! | GTATTGGAGGAGGGTTTTGG+GGG | + | chr1.1:77232864-77232883 | None:intergenic | 50.0% |
!!! | AGAGGGGCACATTGGTTTTC+TGG | - | chr1.1:77233077-77233096 | MS.gene71696:intron | 50.0% |
!!! | GAGGGGCACATTGGTTTTCT+GGG | - | chr1.1:77233078-77233097 | MS.gene71696:intron | 50.0% |
!!! | GGCACATTGGTTTTCTGGGA+AGG | - | chr1.1:77233082-77233101 | MS.gene71696:intron | 50.0% |
!!! | TATTGGAGGAGGGTTTTGGG+GGG | + | chr1.1:77232863-77232882 | None:intergenic | 50.0% |
AGGCAAGACCCATCCTTTGG+AGG | - | chr1.1:77234082-77234101 | MS.gene71696:CDS | 55.0% | |
CCACGCTGGAATCTTTGTGC+AGG | - | chr1.1:77233190-77233209 | MS.gene71696:intron | 55.0% | |
CCTGCACAAAGATTCCAGCG+TGG | + | chr1.1:77233193-77233212 | None:intergenic | 55.0% | |
GAACCACGATGCCCCTCTAT+AGG | + | chr1.1:77231075-77231094 | None:intergenic | 55.0% | |
GCACAAGCGCATGAAGAAGC+TGG | - | chr1.1:77233532-77233551 | MS.gene71696:CDS | 55.0% | |
GCCGTTTGAAGAGAGACCGA+AGG | + | chr1.1:77230374-77230393 | None:intergenic | 55.0% | |
GGAGTTTGGAGGGGAAGGAA+AGG | - | chr1.1:77232664-77232683 | MS.gene71696:intron | 55.0% | |
GTTTGCGAGTTTGGAGGGGA+AGG | + | chr1.1:77233015-77233034 | None:intergenic | 55.0% | |
GTTTGGGAGTTTGGAGGGGA+AGG | - | chr1.1:77232659-77232678 | MS.gene71696:intron | 55.0% | |
! | AATGGGAAGGAGGGCTTTGG+GGG | + | chr1.1:77232941-77232960 | None:intergenic | 55.0% |
!!! | AGGAGGGTTTTGGGGGGTTT+TGG | + | chr1.1:77232857-77232876 | None:intergenic | 55.0% |
!!! | AGGGTTTTGGGGGGTTTTGG+AGG | + | chr1.1:77232854-77232873 | None:intergenic | 55.0% |
!!! | GGGTTTTGGGGGGTTTTGGA+GGG | + | chr1.1:77232853-77232872 | None:intergenic | 55.0% |
CGAGTTTGGAGGGGAAGGGA+GGG | + | chr1.1:77233010-77233029 | None:intergenic | 60.0% | |
GAGTTTGGAGGGGAAGGGAG+GGG | + | chr1.1:77233009-77233028 | None:intergenic | 60.0% | |
GTGCAAACCACGAAAGGCCG+AGG | - | chr1.1:77232004-77232023 | MS.gene71696:intron | 60.0% | |
!! | ATGGGAAGGAGGGCTTTGGG+GGG | + | chr1.1:77232940-77232959 | None:intergenic | 60.0% |
!! | TGGCCTATAGAGGGGCATCG+TGG | - | chr1.1:77231069-77231088 | MS.gene71696:intron | 60.0% |
GCGAGTTTGGAGGGGAAGGG+AGG | + | chr1.1:77233011-77233030 | None:intergenic | 65.0% | |
GGGAAGGGAGGGGAAGGCTT+GGG | + | chr1.1:77232999-77233018 | None:intergenic | 65.0% | |
TAGGGTGAAGGAGCCCACGC+TGG | - | chr1.1:77233176-77233195 | MS.gene71696:intron | 65.0% | |
TTGGAGGGGAAGGGAGGGGA+AGG | + | chr1.1:77233005-77233024 | None:intergenic | 65.0% | |
GGGGAAGGGAGGGGAAGGCT+TGG | + | chr1.1:77233000-77233019 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 77230220 | 77234139 | 77230220 | ID=MS.gene71696 |
chr1.1 | mRNA | 77230220 | 77234139 | 77230220 | ID=MS.gene71696.t1;Parent=MS.gene71696 |
chr1.1 | exon | 77233829 | 77234139 | 77233829 | ID=MS.gene71696.t1.exon1;Parent=MS.gene71696.t1 |
chr1.1 | CDS | 77233829 | 77234139 | 77233829 | ID=cds.MS.gene71696.t1;Parent=MS.gene71696.t1 |
chr1.1 | exon | 77233514 | 77233743 | 77233514 | ID=MS.gene71696.t1.exon2;Parent=MS.gene71696.t1 |
chr1.1 | CDS | 77233514 | 77233743 | 77233514 | ID=cds.MS.gene71696.t1;Parent=MS.gene71696.t1 |
chr1.1 | exon | 77231148 | 77231187 | 77231148 | ID=MS.gene71696.t1.exon3;Parent=MS.gene71696.t1 |
chr1.1 | CDS | 77231148 | 77231187 | 77231148 | ID=cds.MS.gene71696.t1;Parent=MS.gene71696.t1 |
chr1.1 | exon | 77230806 | 77230897 | 77230806 | ID=MS.gene71696.t1.exon4;Parent=MS.gene71696.t1 |
chr1.1 | CDS | 77230806 | 77230897 | 77230806 | ID=cds.MS.gene71696.t1;Parent=MS.gene71696.t1 |
chr1.1 | exon | 77230220 | 77230407 | 77230220 | ID=MS.gene71696.t1.exon5;Parent=MS.gene71696.t1 |
chr1.1 | CDS | 77230220 | 77230407 | 77230220 | ID=cds.MS.gene71696.t1;Parent=MS.gene71696.t1 |
Gene Sequence |
Protein sequence |