AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71996


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71996.t1 MTR_5g013320 71.728 191 54 0 8 198 6 196 1.34e-102 296
MS.gene71996.t1 MTR_4g099440 97.857 140 3 0 83 222 1 140 4.84e-95 274
MS.gene71996.t1 MTR_5g012420 40.083 242 114 4 1 213 2 241 1.28e-58 185
MS.gene71996.t1 MTR_4g027050 40.598 234 110 3 8 213 6 238 3.05e-58 184
MS.gene71996.t1 MTR_4g101020 39.149 235 113 3 8 213 7 240 3.51e-55 176
MS.gene71996.t1 MTR_4g118760 53.788 132 58 1 1 132 1 129 8.32e-42 144
MS.gene71996.t1 MTR_4g118760 53.788 132 58 1 1 132 1 129 1.34e-41 143
MS.gene71996.t1 MTR_4g026620 41.111 180 95 2 8 183 18 190 6.23e-40 136
MS.gene71996.t1 MTR_4g026830 42.105 171 93 2 8 178 24 188 1.06e-37 130
MS.gene71996.t1 MTR_4g026650 46.721 122 65 0 8 129 24 145 2.67e-34 120
MS.gene71996.t1 MTR_1g081950 48.780 123 63 0 8 130 6 128 6.03e-33 123
MS.gene71996.t1 MTR_0135s0080 45.902 122 66 0 8 129 23 144 7.85e-33 116
MS.gene71996.t1 MTR_4g026780 45.902 122 66 0 8 129 23 144 1.92e-32 116
MS.gene71996.t1 MTR_4g026780 45.902 122 66 0 8 129 23 144 3.03e-32 116
MS.gene71996.t1 MTR_4g026780 45.902 122 66 0 8 129 23 144 4.18e-32 116
MS.gene71996.t1 MTR_4g026780 45.902 122 66 0 8 129 23 144 9.96e-32 116
MS.gene71996.t1 MTR_4g026780 45.902 122 66 0 8 129 23 144 2.56e-31 115
MS.gene71996.t1 MTR_5g012420 35.294 170 80 3 73 213 1 169 5.34e-30 109
MS.gene71996.t1 MTR_4g026540 37.423 163 98 2 20 178 26 188 1.65e-24 96.3
MS.gene71996.t1 MTR_0753s0030 41.250 80 44 2 21 97 1 80 1.03e-14 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71996.t1 AT5G47180 59.276 221 86 3 1 219 1 219 4.68e-92 269
MS.gene71996.t1 AT5G47180 59.276 221 86 3 1 219 1 219 4.68e-92 269
MS.gene71996.t1 AT2G45140 42.157 204 108 2 4 197 1 204 1.05e-52 169
MS.gene71996.t1 AT2G45140 39.367 221 107 3 4 197 1 221 6.94e-49 160
MS.gene71996.t1 AT4G00170 40.336 238 114 6 1 212 1 236 1.19e-47 157
MS.gene71996.t1 AT3G60600 38.249 217 107 4 8 197 22 238 1.78e-45 152
MS.gene71996.t1 AT3G60600 40.964 166 98 0 8 173 22 187 1.94e-40 138
MS.gene71996.t1 AT3G60600 37.198 207 112 4 8 200 22 224 6.47e-40 137
MS.gene71996.t1 AT4G00170 39.234 209 101 5 30 212 1 209 5.63e-38 131
MS.gene71996.t1 AT1G51270 41.958 143 83 0 4 146 1 143 5.32e-37 132
MS.gene71996.t1 AT1G51270 41.958 143 83 0 4 146 1 143 5.32e-37 132
MS.gene71996.t1 AT1G51270 41.958 143 83 0 4 146 1 143 5.32e-37 132
MS.gene71996.t1 AT1G51270 41.958 143 83 0 4 146 1 143 5.32e-37 132
MS.gene71996.t1 AT1G51270 41.844 141 82 0 6 146 4 144 2.55e-36 131
MS.gene71996.t1 AT1G51270 41.958 143 83 0 4 146 1 143 5.61e-36 132
MS.gene71996.t1 AT1G51270 41.958 143 83 0 4 146 172 314 5.96e-36 132
MS.gene71996.t1 AT1G51270 37.313 134 84 0 6 139 4 137 1.32e-29 115
MS.gene71996.t1 AT1G51270 41.958 143 83 0 4 146 172 314 5.96e-36 132
MS.gene71996.t1 AT1G51270 37.313 134 84 0 6 139 4 137 1.32e-29 115
MS.gene71996.t1 AT1G51270 41.958 143 83 0 4 146 172 314 1.32e-35 132
MS.gene71996.t1 AT1G51270 37.313 134 84 0 6 139 4 137 2.03e-29 115
MS.gene71996.t1 AT1G51270 41.958 143 83 0 4 146 124 266 1.63e-35 132
MS.gene71996.t1 AT1G51270 37.500 88 55 0 52 139 2 89 1.34e-16 78.6
MS.gene71996.t1 AT1G51270 41.958 143 83 0 4 146 124 266 1.63e-35 132
MS.gene71996.t1 AT1G51270 37.500 88 55 0 52 139 2 89 1.34e-16 78.6
MS.gene71996.t1 AT1G51270 41.958 143 83 0 4 146 124 266 1.63e-35 132
MS.gene71996.t1 AT1G51270 37.500 88 55 0 52 139 2 89 1.34e-16 78.6
MS.gene71996.t1 AT1G51270 41.958 143 83 0 4 146 124 266 1.63e-35 132
MS.gene71996.t1 AT1G51270 37.500 88 55 0 52 139 2 89 1.34e-16 78.6
MS.gene71996.t1 AT1G51270 41.958 143 83 0 4 146 172 314 2.29e-35 132
MS.gene71996.t1 AT1G51270 37.313 134 84 0 6 139 4 137 2.91e-29 115
MS.gene71996.t1 AT2G23830 44.531 128 71 0 5 132 3 130 2.11e-33 117
MS.gene71996.t1 AT1G08820 46.154 130 69 1 8 136 5 134 7.50e-33 122
MS.gene71996.t1 AT1G08820 46.154 130 69 1 8 136 5 134 7.50e-33 122
MS.gene71996.t1 AT1G08820 46.154 130 69 1 8 136 5 134 7.50e-33 122
MS.gene71996.t1 AT1G08820 46.154 130 69 1 8 136 5 134 7.50e-33 122
MS.gene71996.t1 AT1G08820 46.154 130 69 1 8 136 5 134 7.50e-33 122
MS.gene71996.t1 AT1G51270 39.189 74 45 0 73 146 1 74 5.69e-12 64.7

Find 58 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATGTTTGTGGGCCTTAT+TGG 0.184699 8.1:+22865396 MS.gene71996:CDS
CTTCACCTTTGCCATGTTTG+TGG 0.310218 8.1:+22865386 MS.gene71996:CDS
CCCTTCGCCATGACTACTAT+TGG 0.321654 8.1:+22862129 None:intergenic
TTCACCTTTGCCATGTTTGT+GGG 0.330121 8.1:+22865387 MS.gene71996:CDS
TTCCTCCTTCAATTGTTGTA+AGG 0.345811 8.1:-22864930 None:intergenic
GGCCTTATTGGATTCTTGTT+TGG 0.353608 8.1:+22865408 MS.gene71996:CDS
GAGGATATTCTCGTTGGGCT+TGG 0.386515 8.1:-22863783 None:intergenic
ACGAAGCTCGGGAGGATTGA+TGG 0.392472 8.1:-22862166 None:intergenic
AGATCATCAACATTGGTGTT+TGG 0.401970 8.1:-22863856 None:intergenic
ACAAAATCTTGATACTTCTT+CGG 0.415832 8.1:+22864091 MS.gene71996:CDS
GATATTCTCGTTGGGCTTGG+AGG 0.421372 8.1:-22863780 None:intergenic
AACCAAACAAGAATCCAATA+AGG 0.425340 8.1:-22865410 None:intergenic
TTATCTCTGCATTGCATGCC+AGG 0.428776 8.1:-22863805 None:intergenic
AGGGAATCGTGCATCATTAG+AGG 0.428838 8.1:+22863176 MS.gene71996:CDS
ATTAGCTCTCTTACAGTATC+CGG 0.437918 8.1:-22863883 None:intergenic
GGATGTATCACACCAGTGTT+AGG 0.447168 8.1:-22863152 None:intergenic
GCGGCATCTGCAACAGGAAC+TGG 0.455063 8.1:+22864976 MS.gene71996:CDS
ACAAGCGCGGCATCTGCAAC+AGG 0.465076 8.1:+22864970 MS.gene71996:CDS
AAGAAATCGTAGAAGTGATC+CGG 0.472414 8.1:+22865356 MS.gene71996:CDS
TTGCAGTTTAATAAGGATAG+TGG 0.473047 8.1:+22863975 MS.gene71996:intron
GTTCATGTTACCAGTTGAGT+TGG 0.474172 8.1:+22862912 MS.gene71996:intron
ATGAGCAGGACATGCTGAAA+AGG 0.479286 8.1:+22865331 MS.gene71996:intron
GCCAGGAGGATATTCTCGTT+GGG 0.485690 8.1:-22863788 None:intergenic
ACACTGGTGTGATACATCCT+AGG 0.492945 8.1:+22863156 MS.gene71996:CDS
TGCCAGGAGGATATTCTCGT+TGG 0.494034 8.1:-22863789 None:intergenic
GTGCTTCCTTGAGGTGAGGT+AGG 0.512970 8.1:-22864041 None:intergenic
TCCAATAAGGCCCACAAACA+TGG 0.517835 8.1:-22865397 None:intergenic
GCCCAACGAGAATATCCTCC+TGG 0.527180 8.1:+22863787 MS.gene71996:CDS
TCAAGCCTTACAACAATTGA+AGG 0.530907 8.1:+22864925 MS.gene71996:CDS
CATACATTGAAAACGAAGCT+CGG 0.539797 8.1:-22862178 None:intergenic
TGAATTTCCAATAGTAGTCA+TGG 0.542130 8.1:-22862136 None:intergenic
CACAAACATGGCAAAGGTGA+AGG 0.543703 8.1:-22865385 None:intergenic
ATATTCTCGTTGGGCTTGGA+GGG 0.552192 8.1:-22863779 None:intergenic
ATACATTGAAAACGAAGCTC+GGG 0.552814 8.1:-22862177 None:intergenic
TCATCTCTTGTGCTTCCTTG+AGG 0.563962 8.1:-22864050 None:intergenic
AGAAATCGTAGAAGTGATCC+GGG 0.571770 8.1:+22865357 MS.gene71996:CDS
TGTTACCAGTTGAGTTGGAG+AGG 0.575278 8.1:+22862917 MS.gene71996:intron
CTAATGATGCACGATTCCCT+AGG 0.584489 8.1:-22863173 None:intergenic
GCAAAGGTGAAGGAGAAGCC+CGG 0.586085 8.1:-22865375 None:intergenic
TCTTGTGCTTCCTTGAGGTG+AGG 0.587034 8.1:-22864045 None:intergenic
TCTCATACAAACTACAACAG+TGG 0.601386 8.1:+22863831 MS.gene71996:CDS
CAATGTTGATGATCTTCCGC+CGG 0.604586 8.1:+22863864 MS.gene71996:CDS
GTCTCTCCTACCTCACCTCA+AGG 0.604827 8.1:+22864035 MS.gene71996:CDS
CATTGAAAACGAAGCTCGGG+AGG 0.607960 8.1:-22862174 None:intergenic
GGTCGTACAAAGTACTTAGA+CGG 0.609617 8.1:-22863131 None:intergenic
CGGCGGAAGATCATCAACAT+TGG 0.616344 8.1:-22863863 None:intergenic
AGTTTAATAAGGATAGTGGA+AGG 0.618342 8.1:+22863979 MS.gene71996:intron
AAAGTACTTAGACGGTGAAG+TGG 0.620351 8.1:-22863123 None:intergenic
TACTTTGTACGACCTAACAC+TGG 0.629880 8.1:+22863140 MS.gene71996:CDS
CACTGGTGTGATACATCCTA+GGG 0.636942 8.1:+22863157 MS.gene71996:CDS
AGCTCTCTTACAGTATCCGG+CGG 0.643569 8.1:-22863880 None:intergenic
ATGCCGCGCTTGTCTGACAG+AGG 0.647048 8.1:-22864960 None:intergenic
ACAGAATGAAATCATTGTGT+AGG 0.648495 8.1:-22865462 None:intergenic
GAATGAAATCATTGTGTAGG+TGG 0.650478 8.1:-22865459 None:intergenic
AAGGCCCACAAACATGGCAA+AGG 0.655384 8.1:-22865391 None:intergenic
AGCCTTACAACAATTGAAGG+AGG 0.661559 8.1:+22864928 MS.gene71996:CDS
ATGCCTCTGTCAGACAAGCG+CGG 0.683892 8.1:+22864957 MS.gene71996:CDS
TCTCTGCATTGCATGCCAGG+AGG 0.728147 8.1:-22863802 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTGTTAAATTACCTA+CGG - chr8.1:22862366-22862385 None:intergenic 15.0%
!! GATTAAATAGATCTATATTA+GGG + chr8.1:22863400-22863419 MS.gene71996:intron 15.0%
!! TAAATTAATGTATACTTCTT+GGG - chr8.1:22863355-22863374 None:intergenic 15.0%
!! TGATTAAATAGATCTATATT+AGG + chr8.1:22863399-22863418 MS.gene71996:intron 15.0%
!! TTAAATTAATGTATACTTCT+TGG - chr8.1:22863356-22863375 None:intergenic 15.0%
!! TTGAAAATAAAAATTGATCA+AGG + chr8.1:22863937-22863956 MS.gene71996:intron 15.0%
!!! AACATTTTTCATTTACATAA+AGG - chr8.1:22862762-22862781 None:intergenic 15.0%
!!! ACATTTTTCATTTACATAAA+GGG - chr8.1:22862761-22862780 None:intergenic 15.0%
!!! TTCATTTTTTCATTACAAAA+TGG + chr8.1:22863453-22863472 MS.gene71996:intron 15.0%
!!! TTTCAAATTTTTACTATACA+TGG - chr8.1:22862537-22862556 None:intergenic 15.0%
!!! TTTTGTGATTAAAAATGAAT+AGG + chr8.1:22863511-22863530 MS.gene71996:intron 15.0%
!! AATAACACTAACATAGATAA+TGG - chr8.1:22862271-22862290 None:intergenic 20.0%
!! ATAATATTACCAAATTTGAG+AGG - chr8.1:22864186-22864205 None:intergenic 20.0%
!! ATTTATATCCAATTCTTATG+TGG + chr8.1:22862879-22862898 MS.gene71996:intron 20.0%
!! ATTTGTGTTAAGATTTGATT+TGG + chr8.1:22865043-22865062 MS.gene71996:intron 20.0%
!! GTTATTATTAATCACAGTTT+AGG + chr8.1:22862285-22862304 MS.gene71996:intron 20.0%
!! GTTCAATCTAAATTAAGTAA+TGG - chr8.1:22864878-22864897 None:intergenic 20.0%
!! TCAATATGAATTATGATTTG+AGG + chr8.1:22865200-22865219 MS.gene71996:intron 20.0%
!!! AATTAAGTAATGGATTTGTA+AGG - chr8.1:22864868-22864887 None:intergenic 20.0%
!!! CAAACTTATTCTTTTTGTAA+AGG + chr8.1:22863024-22863043 MS.gene71996:intron 20.0%
!!! GAAACATTTTTCATAAGTAT+CGG + chr8.1:22862653-22862672 MS.gene71996:intron 20.0%
!!! TGATAATTTGAATTGTTGTT+GGG + chr8.1:22863251-22863270 MS.gene71996:intron 20.0%
!!! TTGATAATTTGAATTGTTGT+TGG + chr8.1:22863250-22863269 MS.gene71996:intron 20.0%
! AAAACTAAAGCAATTCTCAA+GGG - chr8.1:22862459-22862478 None:intergenic 25.0%
! AAGTTTAGTCATGATATACT+TGG - chr8.1:22865079-22865098 None:intergenic 25.0%
! ACAAAATCTTGATACTTCTT+CGG + chr8.1:22864091-22864110 MS.gene71996:CDS 25.0%
! ACAAAATTCCAAAACTTAGA+AGG + chr8.1:22865147-22865166 MS.gene71996:intron 25.0%
! ACTTATAACTGATATCTCAA+AGG - chr8.1:22864148-22864167 None:intergenic 25.0%
! AGATGACTTATATACAATAC+AGG + chr8.1:22865177-22865196 MS.gene71996:intron 25.0%
! CAAAATTCCAAAACTTAGAA+GGG + chr8.1:22865148-22865167 MS.gene71996:intron 25.0%
! CTCAATCAGTATATAATCAA+TGG - chr8.1:22864654-22864673 None:intergenic 25.0%
! GAAAGAAAACTCTAATTCTT+GGG + chr8.1:22864404-22864423 MS.gene71996:intron 25.0%
! TACAAATGAATACGTCTAAA+AGG - chr8.1:22863318-22863337 None:intergenic 25.0%
! TAGTATAACCACATAAGAAT+TGG - chr8.1:22862890-22862909 None:intergenic 25.0%
! TATTCATTTGTACAAAGTAC+TGG + chr8.1:22863326-22863345 MS.gene71996:intron 25.0%
! TCATTACAAAATGGCTATTT+AGG + chr8.1:22863462-22863481 MS.gene71996:intron 25.0%
!! AATTTTACTCTTCATTTGAC+TGG + chr8.1:22864628-22864647 MS.gene71996:intron 25.0%
!! CATATTTTCTTGAACCAAAT+AGG - chr8.1:22863426-22863445 None:intergenic 25.0%
!! CATTGATTATATACTGATTG+AGG + chr8.1:22864652-22864671 MS.gene71996:intron 25.0%
!! TAATTTTCCCTTCTAAGTTT+TGG - chr8.1:22865158-22865177 None:intergenic 25.0%
!! TTTCAAACTTTTACCATGAA+TGG - chr8.1:22862577-22862596 None:intergenic 25.0%
!! TTTTTGCTTGCAGTTTAATA+AGG + chr8.1:22863968-22863987 MS.gene71996:intron 25.0%
!!! AGTTTTGGAATTTTGTTATG+AGG - chr8.1:22865143-22865162 None:intergenic 25.0%
AAAGCAAAATAACATGACAG+TGG - chr8.1:22863090-22863109 None:intergenic 30.0%
AACCAAACAAGAATCCAATA+AGG - chr8.1:22865413-22865432 None:intergenic 30.0%
AACTTAGGATATAGCAGATA+TGG + chr8.1:22864504-22864523 MS.gene71996:intron 30.0%
AAGCCATAGAAATGAGATAA+TGG + chr8.1:22864283-22864302 MS.gene71996:intron 30.0%
ACTTAGGATATAGCAGATAT+GGG + chr8.1:22864505-22864524 MS.gene71996:intron 30.0%
AGCCATAGAAATGAGATAAT+GGG + chr8.1:22864284-22864303 MS.gene71996:intron 30.0%
ATCAAGAAAACATGTGGATT+TGG - chr8.1:22865313-22865332 None:intergenic 30.0%
ATCACTCTCATCTTTACAAT+AGG + chr8.1:22864362-22864381 MS.gene71996:intron 30.0%
CAGTTACTTATAGCAGAAAT+TGG + chr8.1:22862432-22862451 MS.gene71996:intron 30.0%
GAAAACTAAAGCAATTCTCA+AGG - chr8.1:22862460-22862479 None:intergenic 30.0%
GGAAAGAAAACTCTAATTCT+TGG + chr8.1:22864403-22864422 MS.gene71996:intron 30.0%
GGACATAAATTATAGTCACA+CGG + chr8.1:22864737-22864756 MS.gene71996:intron 30.0%
TAGATGCTAATACTACACAA+TGG - chr8.1:22863728-22863747 None:intergenic 30.0%
TATTAACATGACACCATTCA+TGG + chr8.1:22862561-22862580 MS.gene71996:intron 30.0%
TCAAGTAACATACACATTAG+TGG - chr8.1:22864475-22864494 None:intergenic 30.0%
TTGCAGTTTAATAAGGATAG+TGG + chr8.1:22863975-22863994 MS.gene71996:intron 30.0%
TTTATGCTTCCTCTCAAATT+TGG + chr8.1:22864174-22864193 MS.gene71996:intron 30.0%
TTTCTTCTTAACCACTCTTT+AGG + chr8.1:22862215-22862234 MS.gene71996:intron 30.0%
! AATTAGAGTTTTCTTTCCCA+GGG - chr8.1:22864401-22864420 None:intergenic 30.0%
! ACTAATGTGTATGTTACTTG+AGG + chr8.1:22864474-22864493 MS.gene71996:intron 30.0%
! TATATACTGATTGAGGTGTA+GGG + chr8.1:22864659-22864678 MS.gene71996:intron 30.0%
! TGGTTTGGGATTATTTGTTA+GGG + chr8.1:22864596-22864615 MS.gene71996:intron 30.0%
! TTATATACTGATTGAGGTGT+AGG + chr8.1:22864658-22864677 MS.gene71996:intron 30.0%
! TTTTGTAAAGGCTTTTATGC+CGG + chr8.1:22863036-22863055 MS.gene71996:intron 30.0%
!! AATTTTGTTATGAGGTAGAG+TGG - chr8.1:22865135-22865154 None:intergenic 30.0%
!! ACTTTCTTTACTTTTCCACT+TGG - chr8.1:22864329-22864348 None:intergenic 30.0%
!! AGAGTACTTCATTGCTTTTA+AGG + chr8.1:22862975-22862994 MS.gene71996:CDS 30.0%
!! AGTTTAATAAGGATAGTGGA+AGG + chr8.1:22863979-22863998 MS.gene71996:intron 30.0%
!! ATGAGATAATGGGGTTTATT+TGG + chr8.1:22864294-22864313 MS.gene71996:intron 30.0%
!! TAATTCTTGGGTTTTATGAC+AGG + chr8.1:22864416-22864435 MS.gene71996:intron 30.0%
!! TGCATTTTGTGAGCTTTAAT+CGG - chr8.1:22863607-22863626 None:intergenic 30.0%
!! TTGGTTTGGGATTATTTGTT+AGG + chr8.1:22864595-22864614 MS.gene71996:intron 30.0%
!!! AGAAGTATCAAGATTTTGTG+TGG - chr8.1:22864090-22864109 None:intergenic 30.0%
!!! CATGTTATTTTGCTTTTGCT+AGG + chr8.1:22863094-22863113 MS.gene71996:intron 30.0%
AACTGATATCTCAAAGGAGA+AGG - chr8.1:22864142-22864161 None:intergenic 35.0%
AAGAAATCGTAGAAGTGATC+CGG + chr8.1:22865356-22865375 MS.gene71996:CDS 35.0%
AAGGCTTGACTCTTCAAATA+CGG - chr8.1:22864914-22864933 None:intergenic 35.0%
ACCCCATTATCTCATTTCTA+TGG - chr8.1:22864289-22864308 None:intergenic 35.0%
ACTTGAGGAAAACAGAACTT+AGG + chr8.1:22864489-22864508 MS.gene71996:intron 35.0%
AGAAATGATCCTGCAAAACA+AGG - chr8.1:22863911-22863930 None:intergenic 35.0%
AGAATAAGTTTGTCCCTGTA+AGG - chr8.1:22863016-22863035 None:intergenic 35.0%
AGTTTGGTCTCAAATTGGTT+TGG + chr8.1:22864581-22864600 MS.gene71996:intron 35.0%
ATACATTGAAAACGAAGCTC+GGG - chr8.1:22862180-22862199 None:intergenic 35.0%
ATATTATACTTCTGTGCCGT+AGG + chr8.1:22862347-22862366 MS.gene71996:intron 35.0%
CAAGAATCATCATCACATCT+GGG + chr8.1:22864214-22864233 MS.gene71996:intron 35.0%
CATACATTGAAAACGAAGCT+CGG - chr8.1:22862181-22862200 None:intergenic 35.0%
CTAAAAGTAATCATGTGTGC+AGG + chr8.1:22862607-22862626 MS.gene71996:intron 35.0%
GATCTATATTAGGGCCTATT+TGG + chr8.1:22863409-22863428 MS.gene71996:intron 35.0%
GCCATAGAAATGAGATAATG+GGG + chr8.1:22864285-22864304 MS.gene71996:intron 35.0%
GGATAAGTTTGGTCTCAAAT+TGG + chr8.1:22864576-22864595 MS.gene71996:intron 35.0%
GTAACATACACATTAGTGGT+CGG - chr8.1:22864471-22864490 None:intergenic 35.0%
TAAAAGGAAAAGAGACCCTT+CGG - chr8.1:22863302-22863321 None:intergenic 35.0%
TAAAGGGTGAAACGAAAATG+CGG - chr8.1:22862745-22862764 None:intergenic 35.0%
TAATTTATGTCCAGCTGCTA+AGG - chr8.1:22864729-22864748 None:intergenic 35.0%
TCAAGCCTTACAACAATTGA+AGG + chr8.1:22864925-22864944 MS.gene71996:CDS 35.0%
TCTCATACAAACTACAACAG+TGG + chr8.1:22863831-22863850 MS.gene71996:CDS 35.0%
TTCAACTCCTCGTAGATTTA+AGG - chr8.1:22863561-22863580 None:intergenic 35.0%
TTCCTCCTTCAATTGTTGTA+AGG - chr8.1:22864933-22864952 None:intergenic 35.0%
TTTCCACATCAATGAGAACT+AGG + chr8.1:22863633-22863652 MS.gene71996:intron 35.0%
TTTCTGACCTTAAATCTACG+AGG + chr8.1:22863551-22863570 MS.gene71996:intron 35.0%
! AGATCATCAACATTGGTGTT+TGG - chr8.1:22863859-22863878 None:intergenic 35.0%
! ATTAGCTCTCTTACAGTATC+CGG - chr8.1:22863886-22863905 None:intergenic 35.0%
! GAATTAGAGTTTTCTTTCCC+AGG - chr8.1:22864402-22864421 None:intergenic 35.0%
! GTTTGGTCTCAAATTGGTTT+GGG + chr8.1:22864582-22864601 MS.gene71996:intron 35.0%
! TTTCCTAGTTCTCATTGATG+TGG - chr8.1:22863639-22863658 None:intergenic 35.0%
! TTTGAGACCAAACTTATCCT+AGG - chr8.1:22864575-22864594 None:intergenic 35.0%
! TTTTTCATGTGATGCATTCC+AGG + chr8.1:22864539-22864558 MS.gene71996:intron 35.0%
!!! AGCTAATAACCTTGTTTTGC+AGG + chr8.1:22863899-22863918 MS.gene71996:intron 35.0%
!!! TTTTTTATGACCTTAGCAGC+TGG + chr8.1:22864716-22864735 MS.gene71996:intron 35.0%
AACCGAGTACTCACAAAAGT+AGG + chr8.1:22862407-22862426 MS.gene71996:intron 40.0%
AAGCAGATAGTACACATGTC+TGG - chr8.1:22863683-22863702 None:intergenic 40.0%
AATTGATCGCACCTAAAGAG+TGG - chr8.1:22862229-22862248 None:intergenic 40.0%
AGAAATCGTAGAAGTGATCC+GGG + chr8.1:22865357-22865376 MS.gene71996:CDS 40.0%
AGATTCGCCTAGGATAAGTT+TGG + chr8.1:22864565-22864584 MS.gene71996:intron 40.0%
AGCCTTACAACAATTGAAGG+AGG + chr8.1:22864928-22864947 MS.gene71996:CDS 40.0%
ATCTCAAAGGAGAAGGTGAA+TGG - chr8.1:22864135-22864154 None:intergenic 40.0%
CCCTGTAAGGAGAGTTAAAA+GGG - chr8.1:22863003-22863022 None:intergenic 40.0%
CTGACGCAAGATATTTGTGA+CGG + chr8.1:22864257-22864276 MS.gene71996:intron 40.0%
CTGCTCATCAAGAAAACATG+TGG - chr8.1:22865319-22865338 None:intergenic 40.0%
GCAAGAATCATCATCACATC+TGG + chr8.1:22864213-22864232 MS.gene71996:intron 40.0%
GGATGTTGAACAACTGAAGT+GGG + chr8.1:22863272-22863291 MS.gene71996:intron 40.0%
GTTCATGTTACCAGTTGAGT+TGG + chr8.1:22862912-22862931 MS.gene71996:intron 40.0%
TACTTTGTACGACCTAACAC+TGG + chr8.1:22863140-22863159 MS.gene71996:CDS 40.0%
TAGAGACGACTACTCAAACT+CGG - chr8.1:22864806-22864825 None:intergenic 40.0%
TCCCTGTAAGGAGAGTTAAA+AGG - chr8.1:22863004-22863023 None:intergenic 40.0%
TCTCAAAGGAGAAGGTGAAT+GGG - chr8.1:22864134-22864153 None:intergenic 40.0%
TTCACCTTTGCCATGTTTGT+GGG + chr8.1:22865387-22865406 MS.gene71996:CDS 40.0%
! AAAGTACTTAGACGGTGAAG+TGG - chr8.1:22863126-22863145 None:intergenic 40.0%
! CACATGTTTTCTTGATGAGC+AGG + chr8.1:22865317-22865336 MS.gene71996:intron 40.0%
! CATGGTGTCAATGTCATGTT+CGG - chr8.1:22862519-22862538 None:intergenic 40.0%
! GGTCGTACAAAGTACTTAGA+CGG - chr8.1:22863134-22863153 None:intergenic 40.0%
! TGGGGTTTATTTGGCTTACT+TGG + chr8.1:22864303-22864322 MS.gene71996:intron 40.0%
!! ACCCTTTTAACTCTCCTTAC+AGG + chr8.1:22862999-22863018 MS.gene71996:intron 40.0%
!! CCCTTTTAACTCTCCTTACA+GGG + chr8.1:22863000-22863019 MS.gene71996:intron 40.0%
!! GGCCTTATTGGATTCTTGTT+TGG + chr8.1:22865408-22865427 MS.gene71996:CDS 40.0%
!! GGTTTTATGACAGGTTGCAA+TGG + chr8.1:22864425-22864444 MS.gene71996:intron 40.0%
!! TGCCTACTTTTGTGAGTACT+CGG - chr8.1:22862412-22862431 None:intergenic 40.0%
ACACTGGTGTGATACATCCT+AGG + chr8.1:22863156-22863175 MS.gene71996:CDS 45.0%
AGGGAATCGTGCATCATTAG+AGG + chr8.1:22863176-22863195 MS.gene71996:CDS 45.0%
ATATTCTCGTTGGGCTTGGA+GGG - chr8.1:22863782-22863801 None:intergenic 45.0%
ATCATCATCACATCTGGGCA+TGG + chr8.1:22864219-22864238 MS.gene71996:intron 45.0%
ATGAGCAGGACATGCTGAAA+AGG + chr8.1:22865331-22865350 MS.gene71996:intron 45.0%
CACAAACATGGCAAAGGTGA+AGG - chr8.1:22865388-22865407 None:intergenic 45.0%
CACTGGTGTGATACATCCTA+GGG + chr8.1:22863157-22863176 MS.gene71996:CDS 45.0%
CTAATGATGCACGATTCCCT+AGG - chr8.1:22863176-22863195 None:intergenic 45.0%
CTTCACCTTTGCCATGTTTG+TGG + chr8.1:22865386-22865405 MS.gene71996:CDS 45.0%
GAAGCCATGCACTAAAGATC+CGG - chr8.1:22863058-22863077 None:intergenic 45.0%
GGATGTATCACACCAGTGTT+AGG - chr8.1:22863155-22863174 None:intergenic 45.0%
GGGATGTTGAACAACTGAAG+TGG + chr8.1:22863271-22863290 MS.gene71996:intron 45.0%
TATGCCGGATCTTTAGTGCA+TGG + chr8.1:22863051-22863070 MS.gene71996:intron 45.0%
TCATCTCTTGTGCTTCCTTG+AGG - chr8.1:22864053-22864072 None:intergenic 45.0%
TCCAATAAGGCCCACAAACA+TGG - chr8.1:22865400-22865419 None:intergenic 45.0%
TGGTCGGAACATTCACAAGA+TGG - chr8.1:22864455-22864474 None:intergenic 45.0%
TTATCTCTGCATTGCATGCC+AGG - chr8.1:22863808-22863827 None:intergenic 45.0%
! ATTTGGCTTACTTGGCCAAG+TGG + chr8.1:22864311-22864330 MS.gene71996:intron 45.0%
! GTTTTCTTTCCCAGGGAATC+AGG - chr8.1:22864394-22864413 None:intergenic 45.0%
!! CAATGTTGATGATCTTCCGC+CGG + chr8.1:22863864-22863883 MS.gene71996:CDS 45.0%
!! TGTTACCAGTTGAGTTGGAG+AGG + chr8.1:22862917-22862936 MS.gene71996:intron 45.0%
!! ATATAAATAATGAAAATATA+TGG - chr8.1:22862867-22862886 None:intergenic 5.0%
!! TATAAATAATGAAAATATAT+GGG - chr8.1:22862866-22862885 None:intergenic 5.0%
AAGGCCCACAAACATGGCAA+AGG - chr8.1:22865394-22865413 None:intergenic 50.0%
AGCTCTCTTACAGTATCCGG+CGG - chr8.1:22863883-22863902 None:intergenic 50.0%
AGGCTATGTCCTGATTCCCT+GGG + chr8.1:22864382-22864401 MS.gene71996:intron 50.0%
CAATGTCATGTTCGGCTGTG+TGG - chr8.1:22862511-22862530 None:intergenic 50.0%
CATTGAAAACGAAGCTCGGG+AGG - chr8.1:22862177-22862196 None:intergenic 50.0%
CGGCGGAAGATCATCAACAT+TGG - chr8.1:22863866-22863885 None:intergenic 50.0%
GAGGATATTCTCGTTGGGCT+TGG - chr8.1:22863786-22863805 None:intergenic 50.0%
GATATTCTCGTTGGGCTTGG+AGG - chr8.1:22863783-22863802 None:intergenic 50.0%
GATTGCCTCTCCAACTCAAC+TGG - chr8.1:22862925-22862944 None:intergenic 50.0%
GCCAGGAGGATATTCTCGTT+GGG - chr8.1:22863791-22863810 None:intergenic 50.0%
TAGGCTATGTCCTGATTCCC+TGG + chr8.1:22864381-22864400 MS.gene71996:intron 50.0%
TCTTGTGCTTCCTTGAGGTG+AGG - chr8.1:22864048-22864067 None:intergenic 50.0%
TGATTGAGGTGTAGGGCTTC+TGG + chr8.1:22864666-22864685 MS.gene71996:intron 50.0%
TGCCAGGAGGATATTCTCGT+TGG - chr8.1:22863792-22863811 None:intergenic 50.0%
! GCCATGTTTGTGGGCCTTAT+TGG + chr8.1:22865396-22865415 MS.gene71996:CDS 50.0%
ACGAAGCTCGGGAGGATTGA+TGG - chr8.1:22862169-22862188 None:intergenic 55.0%
ATCCTAGGCGAATCTGCACC+TGG - chr8.1:22864560-22864579 None:intergenic 55.0%
ATGCCTCTGTCAGACAAGCG+CGG + chr8.1:22864957-22864976 MS.gene71996:CDS 55.0%
GCAAAGGTGAAGGAGAAGCC+CGG - chr8.1:22865378-22865397 None:intergenic 55.0%
GCCCAACGAGAATATCCTCC+TGG + chr8.1:22863787-22863806 MS.gene71996:CDS 55.0%
GTCTCTCCTACCTCACCTCA+AGG + chr8.1:22864035-22864054 MS.gene71996:CDS 55.0%
GTGCTTCCTTGAGGTGAGGT+AGG - chr8.1:22864044-22864063 None:intergenic 55.0%
TCTCTGCATTGCATGCCAGG+AGG - chr8.1:22863805-22863824 None:intergenic 55.0%
TGTCATGTTCGGCTGTGTGG+CGG - chr8.1:22862508-22862527 None:intergenic 55.0%
TTCCAGGTGCAGATTCGCCT+AGG + chr8.1:22864555-22864574 MS.gene71996:intron 55.0%
! AACTGAAGTGGGCTCTCCGA+AGG + chr8.1:22863283-22863302 MS.gene71996:intron 55.0%
! ACTGAAGTGGGCTCTCCGAA+GGG + chr8.1:22863284-22863303 MS.gene71996:intron 55.0%
!! TGGCGGTGTCGATGCTTCAT+AGG - chr8.1:22862491-22862510 None:intergenic 55.0%
ACAAGCGCGGCATCTGCAAC+AGG + chr8.1:22864970-22864989 MS.gene71996:CDS 60.0%
ATGCCGCGCTTGTCTGACAG+AGG - chr8.1:22864963-22864982 None:intergenic 60.0%
GCGGCATCTGCAACAGGAAC+TGG + chr8.1:22864976-22864995 MS.gene71996:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 22862138 22865473 22862138 ID=MS.gene71996
chr8.1 mRNA 22862138 22865473 22862138 ID=MS.gene71996.t1;Parent=MS.gene71996
chr8.1 exon 22862138 22862195 22862138 ID=MS.gene71996.t1.exon1;Parent=MS.gene71996.t1
chr8.1 CDS 22862138 22862195 22862138 ID=cds.MS.gene71996.t1;Parent=MS.gene71996.t1
chr8.1 exon 22862926 22862996 22862926 ID=MS.gene71996.t1.exon2;Parent=MS.gene71996.t1
chr8.1 CDS 22862926 22862996 22862926 ID=cds.MS.gene71996.t1;Parent=MS.gene71996.t1
chr8.1 exon 22863116 22863197 22863116 ID=MS.gene71996.t1.exon3;Parent=MS.gene71996.t1
chr8.1 CDS 22863116 22863197 22863116 ID=cds.MS.gene71996.t1;Parent=MS.gene71996.t1
chr8.1 exon 22863776 22863891 22863776 ID=MS.gene71996.t1.exon4;Parent=MS.gene71996.t1
chr8.1 CDS 22863776 22863891 22863776 ID=cds.MS.gene71996.t1;Parent=MS.gene71996.t1
chr8.1 exon 22863981 22864112 22863981 ID=MS.gene71996.t1.exon5;Parent=MS.gene71996.t1
chr8.1 CDS 22863981 22864112 22863981 ID=cds.MS.gene71996.t1;Parent=MS.gene71996.t1
chr8.1 exon 22864923 22864997 22864923 ID=MS.gene71996.t1.exon6;Parent=MS.gene71996.t1
chr8.1 CDS 22864923 22864997 22864923 ID=cds.MS.gene71996.t1;Parent=MS.gene71996.t1
chr8.1 exon 22865339 22865473 22865339 ID=MS.gene71996.t1.exon7;Parent=MS.gene71996.t1
chr8.1 CDS 22865339 22865473 22865339 ID=cds.MS.gene71996.t1;Parent=MS.gene71996.t1
Gene Sequence

>MS.gene71996

ATGACTACTATTGGAAATTCATTCATCTCCATCAATCCTCCCGAGCTTCGTTTTCAATGTATGTTATCTCATCAACTTTTCTTCTTAACCACTCTTTAGGTGCGATCAATTACTTGATTAATTTAATCAACCATTATCTATGTTAGTGTTATTATTAATCACAGTTTAGGAATTTGTCAATATATTGTTTAATTATGATTTATATCGTGATATTATACTTCTGTGCCGTAGGTAATTTAACAATTATTTTGAAATCATTAGATAGTGACAACCGAGTACTCACAAAAGTAGGCACAGTTACTTATAGCAGAAATTGGACCCTTGAGAATTGCTTTAGTTTTCTGTAGTTACCTATGAAGCATCGACACCGCCACACAGCCGAACATGACATTGACACCATGTATAGTAAAAATTTGAAAAAATTATTAACATGACACCATTCATGGTAAAAGTTTGAAAAAATGAATTACTAAAAGTAATCATGTGTGCAGGTGTCGTGTCGATGTTATACATATGAAACATTTTTCATAAGTATCGGTACTGCAGATGTAGTTATTACATGCATCTCATACAAAGAGCATTTCTACTTCACTTGTTTTTAACTCCGCATTTTCGTTTCACCCTTTATGTAAATGAAAAATGTTTTGATGTTTGAAAGCATTGCTTATATAGTTATATAACATTTTGTGTTTGTGAAGTGTGTGAAGTGATAAGCAGAATTTCTTCCCATATATTTTCATTATTTATATCCAATTCTTATGTGGTTATACTAATGTTCATGTTACCAGTTGAGTTGGAGAGGCAATCATTTTGCGATCTTAATGTTTTGAATAAGACAGAGTACTTCATTGCTTTTAAGGTACCCTTTTAACTCTCCTTACAGGGACAAACTTATTCTTTTTGTAAAGGCTTTTATGCCGGATCTTTAGTGCATGGCTTCGTACTGATTCCACTGTCATGTTATTTTGCTTTTGCTAGGTGAAGACCACTTCACCGTCTAAGTACTTTGTACGACCTAACACTGGTGTGATACATCCTAGGGAATCGTGCATCATTAGAGGTGATTCTTGTCACTATTGCAGAAACATTTATAAGTTGCATTAAGATTATCTTTGATAATTTGAATTGTTGTTGGGATGTTGAACAACTGAAGTGGGCTCTCCGAAGGGTCTCTTTTCCTTTTAGACGTATTCATTTGTACAAAGTACTGGATGCCCAAGAAGTATACATTAATTTAAAAAATACTGTTTCATATTATGCTTGATTAAATAGATCTATATTAGGGCCTATTTGGTTCAAGAAAATATGTTATGTATTCATTTTTTCATTACAAAATGGCTATTTAGGAAATAAAAGTGAAAACAAGTTGATATTTTTGTGATTAAAAATGAATAGGAAATTAAAACACAATATTTTCTGACCTTAAATCTACGAGGAGTTGAAGATTGCTAAGTTCAACAGTTCAACCGATTAAAGCTCACAAAATGCAGTTTTGTTTCCACATCAATGAGAACTAGGAAAAATGTATTACTAAATTGCAAACCAGACATGTGTACTATCTGCTTGTTTGTGATCTTTGAGCTTCTACCATTGTGTAGTATTAGCATCTATCATATTCTTCAGTTTTTGTATTCACAGTCACCCTCCAAGCCCAACGAGAATATCCTCCTGGCATGCAATGCAGAGATAAGTTTCTCATACAAACTACAACAGTGGATCCAAACACCAATGTTGATGATCTTCCGCCGGATACTGTAAGAGAGCTAATAACCTTGTTTTGCAGGATCATTTCTAAAAATTTGAAAATAAAAATTGATCAAGGTCACTTTATTTTTGCTTGCAGTTTAATAAGGATAGTGGAAGGTTAACAGAAGAGTTGAAACTAAGAGTTGTATATGTCTCTCCTACCTCACCTCAAGGAAGCACAAGAGATGATACAGTGACAAACTCCACACAAAATCTTGATACTTCTTCGGTGAGTTTCTCTGTTTCTCCCATTCACCTTCTCCTTTGAGATATCAGTTATAAGTTTTATTTTTATGCTTCCTCTCAAATTTGGTAATATTATGTATCAAGCAAGAATCATCATCACATCTGGGCATGGTTTTCGAAATGCAAACTGACGCAAGATATTTGTGACGGTTCAAGCCATAGAAATGAGATAATGGGGTTTATTTGGCTTACTTGGCCAAGTGGAAAAGTAAAGAAAGTATCTACTCTTTAGATCACTCTCATCTTTACAATAGGCTATGTCCTGATTCCCTGGGAAAGAAAACTCTAATTCTTGGGTTTTATGACAGGTTGCAATGGTAATCCATCTTGTGAATGTTCCGACCACTAATGTGTATGTTACTTGAGGAAAACAGAACTTAGGATATAGCAGATATGGGAAGAATAGATTTTTTTCATGTGATGCATTCCAGGTGCAGATTCGCCTAGGATAAGTTTGGTCTCAAATTGGTTTGGGATTATTTGTTAGGGATCAAGTGAAATTTTACTCTTCATTTGACTGGCCATTGATTATATACTGATTGAGGTGTAGGGCTTCTGGTGCGAGTGTGACATCAATCTTCATAAATTTTTTATGACCTTAGCAGCTGGACATAAATTATAGTCACACGGTAAAAAATTAATGAGAAGTTTAGTTGCTTGATGAGCTCTATTGCCGAGTTTGAGTAGTCGTCTCTAATACATTACTTCGTATTACATATTTTGTGTCTTCTGTTTCCTTACAAATCCATTACTTAATTTAGATTGAACTTAATTAATTTTTCCGTATTTGAAGAGTCAAGCCTTACAACAATTGAAGGAGGAAAGAGATGCCTCTGTCAGACAAGCGCGGCATCTGCAACAGGAACTGGTAATTATGTTACATGTTGTCTTAACATTACTCTATGATCATATGATTTGTGTTAAGATTTGATTTGGACTTTTACTTCCAAGTATATCATGACTAAACTTGTAGTTGATTGTAAACATTACTGAAAGTTTGAGCCACTCTACCTCATAACAAAATTCCAAAACTTAGAAGGGAAAATTAGATGACTTATATACAATACAGGTCAATATGAATTATGATTTGAGGAAATATTTTCTGAAAATAATTGCATAATCGATTCTTCAATTTCTTTTGATAAGCTGTTGTTTGAGAGCTATTGCTAATATCACTAATCCAAATCCACATGTTTTCTTGATGAGCAGGACATGCTGAAAAGGCGAAGAAATCGTAGAAGTGATCCGGGCTTCTCCTTCACCTTTGCCATGTTTGTGGGCCTTATTGGATTCTTGTTTGGTTTGCTTTTGAAACTTTCATTGTCTTCACCACCTACACAATGA

Protein sequence

>MS.gene71996.t1

MTTIGNSFISINPPELRFQFELERQSFCDLNVLNKTEYFIAFKVKTTSPSKYFVRPNTGVIHPRESCIIRVTLQAQREYPPGMQCRDKFLIQTTTVDPNTNVDDLPPDTFNKDSGRLTEELKLRVVYVSPTSPQGSTRDDTVTNSTQNLDTSSSQALQQLKEERDASVRQARHLQQELDMLKRRRNRRSDPGFSFTFAMFVGLIGFLFGLLLKLSLSSPPTQ