Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72660.t1 | XP_003612372.1 | 97.9 | 425 | 6 | 1 | 1 | 425 | 1 | 422 | 4.30E-206 | 727.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72660.t1 | Q9SVG0 | 59.1 | 430 | 166 | 3 | 5 | 424 | 6 | 435 | 1.1e-133 | 478.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72660.t1 | G7K191 | 97.9 | 425 | 6 | 1 | 1 | 425 | 1 | 422 | 3.1e-206 | 727.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene72660 | MS.gene29579 | PPI |
| MS.gene72660 | MS.gene09785 | PPI |
| MS.gene72660 | MS.gene007486 | PPI |
| MS.gene72660 | MS.gene007485 | PPI |
| MS.gene72660 | MS.gene061932 | PPI |
| MS.gene72660 | MS.gene051911 | PPI |
| MS.gene72660 | MS.gene018518 | PPI |
| MS.gene72660 | MS.gene007487 | PPI |
| MS.gene72660 | MS.gene22482 | PPI |
| MS.gene72660 | MS.gene80637 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72660.t1 | MTR_5g024300 | 97.882 | 425 | 6 | 1 | 1 | 425 | 1 | 422 | 0.0 | 825 |
| MS.gene72660.t1 | MTR_8g073340 | 67.488 | 406 | 128 | 1 | 20 | 425 | 12 | 413 | 0.0 | 529 |
| MS.gene72660.t1 | MTR_7g107090 | 37.170 | 417 | 229 | 7 | 19 | 417 | 3 | 404 | 7.22e-76 | 242 |
| MS.gene72660.t1 | MTR_1g094620 | 23.928 | 443 | 289 | 15 | 4 | 421 | 117 | 536 | 3.31e-17 | 84.0 |
| MS.gene72660.t1 | MTR_1g094620 | 24.000 | 450 | 287 | 16 | 4 | 421 | 117 | 543 | 2.39e-16 | 81.6 |
| MS.gene72660.t1 | MTR_3g465510 | 25.659 | 417 | 256 | 16 | 31 | 422 | 42 | 429 | 5.93e-16 | 79.7 |
| MS.gene72660.t1 | MTR_7g010750 | 26.877 | 413 | 254 | 18 | 32 | 422 | 42 | 428 | 1.77e-15 | 78.2 |
| MS.gene72660.t1 | MTR_7g010790 | 26.389 | 432 | 264 | 20 | 18 | 422 | 25 | 429 | 1.09e-14 | 75.9 |
| MS.gene72660.t1 | MTR_3g033730 | 26.328 | 433 | 244 | 18 | 26 | 422 | 36 | 429 | 5.14e-14 | 73.9 |
| MS.gene72660.t1 | MTR_8g467180 | 24.510 | 408 | 270 | 13 | 31 | 422 | 20 | 405 | 1.86e-13 | 72.0 |
| MS.gene72660.t1 | MTR_3g465440 | 25.659 | 417 | 249 | 17 | 31 | 418 | 48 | 432 | 2.42e-13 | 72.4 |
| MS.gene72660.t1 | MTR_8g467190 | 25.000 | 400 | 254 | 14 | 43 | 422 | 31 | 404 | 1.22e-12 | 69.7 |
| MS.gene72660.t1 | MTR_8g465310 | 23.844 | 411 | 263 | 16 | 34 | 422 | 22 | 404 | 8.01e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72660.t1 | AT4G38250 | 65.661 | 431 | 138 | 3 | 4 | 424 | 5 | 435 | 0.0 | 558 |
| MS.gene72660.t1 | AT2G42005 | 66.420 | 405 | 130 | 2 | 18 | 420 | 10 | 410 | 0.0 | 541 |
| MS.gene72660.t1 | AT5G65990 | 66.993 | 409 | 129 | 2 | 17 | 425 | 25 | 427 | 0.0 | 515 |
| MS.gene72660.t1 | AT3G11900 | 36.301 | 438 | 233 | 8 | 7 | 417 | 11 | 429 | 7.13e-74 | 238 |
| MS.gene72660.t1 | AT3G11900 | 36.301 | 438 | 233 | 8 | 7 | 417 | 11 | 429 | 7.13e-74 | 238 |
| MS.gene72660.t1 | AT5G15240 | 26.256 | 438 | 279 | 15 | 4 | 420 | 5 | 419 | 5.31e-20 | 92.0 |
| MS.gene72660.t1 | AT2G41190 | 24.129 | 402 | 276 | 10 | 32 | 421 | 148 | 532 | 1.49e-18 | 88.2 |
| MS.gene72660.t1 | AT2G39130 | 24.645 | 422 | 278 | 13 | 19 | 421 | 145 | 545 | 3.47e-18 | 87.0 |
| MS.gene72660.t1 | AT2G39130 | 24.645 | 422 | 278 | 13 | 19 | 421 | 145 | 545 | 3.47e-18 | 87.0 |
| MS.gene72660.t1 | AT3G54830 | 26.879 | 346 | 211 | 12 | 44 | 367 | 163 | 488 | 4.33e-15 | 77.8 |
| MS.gene72660.t1 | AT3G54830 | 26.879 | 346 | 211 | 12 | 44 | 367 | 163 | 488 | 4.33e-15 | 77.8 |
| MS.gene72660.t1 | AT5G02180 | 26.128 | 421 | 265 | 12 | 20 | 420 | 150 | 544 | 2.24e-14 | 75.5 |
| MS.gene72660.t1 | AT5G02180 | 26.128 | 421 | 265 | 12 | 20 | 420 | 150 | 544 | 2.24e-14 | 75.5 |
| MS.gene72660.t1 | AT2G39130 | 25.620 | 363 | 230 | 13 | 19 | 362 | 145 | 486 | 1.62e-13 | 72.8 |
| MS.gene72660.t1 | AT3G28960 | 25.829 | 422 | 247 | 16 | 31 | 421 | 16 | 402 | 2.29e-13 | 71.6 |
| MS.gene72660.t1 | AT3G28960 | 25.829 | 422 | 247 | 16 | 31 | 421 | 16 | 402 | 2.29e-13 | 71.6 |
| MS.gene72660.t1 | AT3G28960 | 25.829 | 422 | 247 | 16 | 31 | 421 | 16 | 402 | 2.29e-13 | 71.6 |
| MS.gene72660.t1 | AT3G28960 | 25.829 | 422 | 247 | 16 | 31 | 421 | 16 | 402 | 2.29e-13 | 71.6 |
| MS.gene72660.t1 | AT5G15240 | 25.948 | 343 | 218 | 11 | 98 | 420 | 7 | 333 | 7.21e-13 | 69.7 |
| MS.gene72660.t1 | AT2G41190 | 24.225 | 355 | 238 | 11 | 32 | 372 | 148 | 485 | 2.75e-11 | 65.9 |
| MS.gene72660.t1 | AT3G09330 | 22.892 | 415 | 292 | 9 | 19 | 421 | 122 | 520 | 2.94e-11 | 65.9 |
| MS.gene72660.t1 | AT1G61270 | 20.903 | 421 | 283 | 15 | 19 | 405 | 25 | 429 | 3.04e-11 | 65.5 |
| MS.gene72660.t1 | AT3G09340 | 23.133 | 415 | 291 | 9 | 19 | 421 | 122 | 520 | 4.98e-11 | 65.1 |
Find 98 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTTGTTGTTGCTGTTTA+TGG | 0.117334 | 5.4:-15716736 | MS.gene72660:CDS |
| CATGCAAAATAGACCAAATT+TGG | 0.163682 | 5.4:-15717316 | MS.gene72660:CDS |
| CGGCGAAAAGTTTGTATCTT+TGG | 0.171178 | 5.4:-15717470 | MS.gene72660:CDS |
| GGTGAGGTGGTTGTTGGTTT+TGG | 0.173510 | 5.4:-15716932 | MS.gene72660:CDS |
| CCCTTAAAAGCTTCCAAATT+TGG | 0.173765 | 5.4:+15717303 | None:intergenic |
| ACTAAAGATAAAGAGAAATT+TGG | 0.176282 | 5.4:-15717198 | MS.gene72660:CDS |
| AAATACTCAAAGGGGCTAAA+TGG | 0.209190 | 5.4:+15717400 | None:intergenic |
| TCTATATTATTTGGTGCTTT+TGG | 0.213007 | 5.4:-15717144 | MS.gene72660:CDS |
| GGTATGATTTCTATATTATT+TGG | 0.220969 | 5.4:-15717153 | MS.gene72660:CDS |
| AATCAAATCTTTCGGCGATT+TGG | 0.225599 | 5.4:-15717658 | MS.gene72660:CDS |
| GATATTATTACTAATAATTT+AGG | 0.226982 | 5.4:-15717084 | MS.gene72660:CDS |
| GGCGAAAAGTTTGTATCTTT+GGG | 0.249310 | 5.4:-15717469 | MS.gene72660:CDS |
| GCCGTTAAACCGATGAAAAT+AGG | 0.259033 | 5.4:+15717489 | None:intergenic |
| ATAGGTGTTATGGTTCAATT+AGG | 0.262950 | 5.4:-15717051 | MS.gene72660:CDS |
| ATCGCCGAAAGATTTGATTT+TGG | 0.265782 | 5.4:+15717662 | None:intergenic |
| ATCAAATCTTTCGGCGATTT+GGG | 0.268793 | 5.4:-15717657 | MS.gene72660:CDS |
| ACCTGCTTTGTTTCATTGTA+TGG | 0.285431 | 5.4:-15716818 | MS.gene72660:CDS |
| GGTTTCAGATGGGGCCATTA+TGG | 0.292416 | 5.4:-15716764 | MS.gene72660:CDS |
| GGTGAGTTTGGTGGCACTTT+TGG | 0.301518 | 5.4:-15716908 | MS.gene72660:CDS |
| CGGTGATGGATTCGAGTTTC+CGG | 0.304307 | 5.4:+15717691 | None:intergenic |
| AGTAGTGTTTGTGTTGTTCT+TGG | 0.305093 | 5.4:-15716850 | MS.gene72660:CDS |
| ATGATTGTGCTTTCACAAGC+TGG | 0.315652 | 5.4:-15717591 | MS.gene72660:CDS |
| ATCGTCGGCGCCGGCGTTCT+CGG | 0.337782 | 5.4:-15717819 | MS.gene72660:CDS |
| GTGTCTTCGCGTGGGTAGGG+TGG | 0.342661 | 5.4:+15717909 | None:intergenic |
| CTAAAGATAAAGAGAAATTT+GGG | 0.358199 | 5.4:-15717197 | MS.gene72660:CDS |
| TTCTCCAAAATCAAATCTTT+CGG | 0.360516 | 5.4:-15717666 | MS.gene72660:CDS |
| TTCACCATTTGTGGCCCATT+AGG | 0.382691 | 5.4:-15717633 | MS.gene72660:CDS |
| AAGTTGAAGAAATGAAAATA+AGG | 0.383503 | 5.4:+15717553 | None:intergenic |
| CTAGGTATTGTTTGTGGGTG+AGG | 0.391723 | 5.4:-15716948 | MS.gene72660:CDS |
| TTTGAATTGGGAAGAAAGGG+GGG | 0.392592 | 5.4:+15717866 | None:intergenic |
| AATCTCTGAAACAGATGTAT+AGG | 0.394641 | 5.4:+15716711 | None:intergenic |
| TTCTGCTAAGAGTGTTGTTA+TGG | 0.395374 | 5.4:-15717358 | MS.gene72660:CDS |
| TTTGTGGGTGAGGTGGTTGT+TGG | 0.396163 | 5.4:-15716938 | MS.gene72660:CDS |
| GATGATGAATCCTGTTTATG+AGG | 0.399583 | 5.4:-15716995 | MS.gene72660:CDS |
| GAATTCAACCCTAATTGAAA+TGG | 0.405419 | 5.4:+15717438 | None:intergenic |
| GATTTGGGTTTCACCATTTG+TGG | 0.407357 | 5.4:-15717642 | MS.gene72660:CDS |
| GTGATTCTAGGTATTGTTTG+TGG | 0.411186 | 5.4:-15716954 | MS.gene72660:CDS |
| AATTTAGGTCAAGGTGTGAT+AGG | 0.415141 | 5.4:-15717069 | MS.gene72660:CDS |
| CCGTTAAACCGATGAAAATA+GGG | 0.418409 | 5.4:+15717490 | None:intergenic |
| AATACTCAAAGGGGCTAAAT+GGG | 0.422180 | 5.4:+15717401 | None:intergenic |
| TTCAGAGATTCTTTCTCCTA+AGG | 0.423873 | 5.4:-15716698 | MS.gene72660:CDS |
| TGGAGATGCTTGGTTTCAGA+TGG | 0.426094 | 5.4:-15716775 | MS.gene72660:CDS |
| TGATTCTAGGTATTGTTTGT+GGG | 0.427448 | 5.4:-15716953 | MS.gene72660:CDS |
| TCAAGGTGTGATAGGTGTTA+TGG | 0.428573 | 5.4:-15717061 | MS.gene72660:CDS |
| GAGGTAGCCGGTGCGTTTGA+AGG | 0.444851 | 5.4:+15717785 | None:intergenic |
| GGGGTGTCTTCGCGTGGGTA+GGG | 0.447145 | 5.4:+15717906 | None:intergenic |
| CCGGTGCGTTTGAAGGAGTA+AGG | 0.447211 | 5.4:+15717792 | None:intergenic |
| AGAGTTGGGTTGGAGATGCT+TGG | 0.457507 | 5.4:-15716785 | MS.gene72660:CDS |
| GGAGATGCTTGGTTTCAGAT+GGG | 0.463040 | 5.4:-15716774 | MS.gene72660:CDS |
| GAAAATAGGGACGGTTTCAC+CGG | 0.463787 | 5.4:+15717503 | None:intergenic |
| TGATTGTGCTTTCACAAGCT+GGG | 0.465440 | 5.4:-15717590 | MS.gene72660:CDS |
| TTCCAAATCAATCAAGCCTT+AGG | 0.468756 | 5.4:+15716682 | None:intergenic |
| TGTCTTCGCGTGGGTAGGGT+GGG | 0.472433 | 5.4:+15717910 | None:intergenic |
| GGGGTGAGTTAGTAAGAAGG+GGG | 0.479036 | 5.4:+15717886 | None:intergenic |
| TAGGTGTTATGGTTCAATTA+GGG | 0.480288 | 5.4:-15717050 | MS.gene72660:CDS |
| AGCTTGTGAAAGCACAATCA+TGG | 0.488957 | 5.4:+15717593 | None:intergenic |
| ACGACCTAATGGGCCACAAA+TGG | 0.489313 | 5.4:+15717629 | None:intergenic |
| TTCATCGCCATCGTCGGCGC+CGG | 0.491063 | 5.4:-15717828 | MS.gene72660:CDS |
| GATGAGACCGGTGAGGTAGC+CGG | 0.501029 | 5.4:+15717773 | None:intergenic |
| ATTACTAATAATTTAGGTCA+AGG | 0.502446 | 5.4:-15717078 | MS.gene72660:CDS |
| GGTTTCACCGGTGGAGTCAC+CGG | 0.519639 | 5.4:+15717515 | None:intergenic |
| TGGGTAGGGTGGGAGTGAGT+AGG | 0.521131 | 5.4:+15717920 | None:intergenic |
| GAGATGCTTGGTTTCAGATG+GGG | 0.523607 | 5.4:-15716773 | MS.gene72660:CDS |
| AACATGGTGTTCAAAGAAGC+AGG | 0.533056 | 5.4:-15717951 | MS.gene72660:CDS |
| AACATCTTCATCGCCATCGT+CGG | 0.542040 | 5.4:-15717834 | MS.gene72660:CDS |
| AAACGCACCGGCTACCTCAC+CGG | 0.545253 | 5.4:-15717780 | MS.gene72660:CDS |
| TAAACAGGATTCATCATCAA+AGG | 0.546520 | 5.4:+15717000 | None:intergenic |
| GGTATTGTTTGTGGGTGAGG+TGG | 0.548580 | 5.4:-15716945 | MS.gene72660:CDS |
| TCCTCCTCGTCAACACTCGC+CGG | 0.555101 | 5.4:-15717710 | MS.gene72660:CDS |
| ACTTTATCATTTCTCACCGC+CGG | 0.560571 | 5.4:-15717534 | MS.gene72660:CDS |
| GGCGAAGAGGTTGATGAGAC+CGG | 0.560917 | 5.4:+15717761 | None:intergenic |
| GGGTGAGTTAGTAAGAAGGG+GGG | 0.563619 | 5.4:+15717887 | None:intergenic |
| TCTTTAGTCTCACTTTCCAA+AGG | 0.564288 | 5.4:+15717213 | None:intergenic |
| GGCGATGAAGATGTTGGCGA+AGG | 0.571223 | 5.4:+15717842 | None:intergenic |
| TTGAATTGGGAAGAAAGGGG+GGG | 0.576525 | 5.4:+15717867 | None:intergenic |
| GACGATGGCGATGAAGATGT+TGG | 0.577278 | 5.4:+15717836 | None:intergenic |
| AGATAAAGAGAAATTTGGGA+GGG | 0.580185 | 5.4:-15717193 | MS.gene72660:CDS |
| GAGGAGGAGCATGCAGTGGT+AGG | 0.580282 | 5.4:+15717725 | None:intergenic |
| ACCATACAATGAAACAAAGC+AGG | 0.581653 | 5.4:+15716817 | None:intergenic |
| GCGAAAAGTTTGTATCTTTG+GGG | 0.582000 | 5.4:-15717468 | MS.gene72660:CDS |
| GAGAACGCCGGCGCCGACGA+TGG | 0.586591 | 5.4:+15717821 | None:intergenic |
| CCTTACTCCTTCAAACGCAC+CGG | 0.595955 | 5.4:-15717792 | MS.gene72660:CDS |
| CGGAAACTCGAATCCATCAC+CGG | 0.599755 | 5.4:-15717690 | MS.gene72660:CDS |
| CTCACCGCCGGTGACTCCAC+CGG | 0.608907 | 5.4:-15717522 | MS.gene72660:CDS |
| GGAGCATGCAGTGGTAGGTG+AGG | 0.612235 | 5.4:+15717730 | None:intergenic |
| CGGTGCGTTTGAAGGAGTAA+GGG | 0.615815 | 5.4:+15717793 | None:intergenic |
| AATAGGGACGGTTTCACCGG+TGG | 0.617887 | 5.4:+15717506 | None:intergenic |
| AAGCACAATCATGGAGTCAA+CGG | 0.622860 | 5.4:+15717602 | None:intergenic |
| AAGATAAAGAGAAATTTGGG+AGG | 0.627925 | 5.4:-15717194 | MS.gene72660:CDS |
| GTAAGGGAGACCGAGAACGC+CGG | 0.630022 | 5.4:+15717809 | None:intergenic |
| TCCGGCGAGTGTTGACGAGG+AGG | 0.631211 | 5.4:+15717709 | None:intergenic |
| GTGGTAGGTGAGGTAAGCGA+TGG | 0.634247 | 5.4:+15717740 | None:intergenic |
| TGAGGTAAGCGATGGCGAAG+AGG | 0.640064 | 5.4:+15717748 | None:intergenic |
| GTTTCCGGCGAGTGTTGACG+AGG | 0.647193 | 5.4:+15717706 | None:intergenic |
| TAAACCGATGAAAATAGGGA+CGG | 0.664104 | 5.4:+15717494 | None:intergenic |
| TGACGAGGAGGAGCATGCAG+TGG | 0.678520 | 5.4:+15717721 | None:intergenic |
| TTCACCGGTGGAGTCACCGG+CGG | 0.683260 | 5.4:+15717518 | None:intergenic |
| AGAGGTTGATGAGACCGGTG+AGG | 0.727750 | 5.4:+15717766 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATATTATTACTAATAATTT+AGG | - | chr5.4:15717557-15717576 | MS.gene72660:CDS | 10.0% |
| !! | AAGTTGAAGAAATGAAAATA+AGG | + | chr5.4:15717091-15717110 | None:intergenic | 20.0% |
| !! | ACTAAAGATAAAGAGAAATT+TGG | - | chr5.4:15717443-15717462 | MS.gene72660:CDS | 20.0% |
| !! | ATTACTAATAATTTAGGTCA+AGG | - | chr5.4:15717563-15717582 | MS.gene72660:CDS | 20.0% |
| !! | CTAAAGATAAAGAGAAATTT+GGG | - | chr5.4:15717444-15717463 | MS.gene72660:CDS | 20.0% |
| !! | GGTATGATTTCTATATTATT+TGG | - | chr5.4:15717488-15717507 | MS.gene72660:CDS | 20.0% |
| ! | AACAAATCCAAAAACCATAA+TGG | + | chr5.4:15717894-15717913 | None:intergenic | 25.0% |
| ! | GACAAAAAATCAGCAAAATT+AGG | + | chr5.4:15717761-15717780 | None:intergenic | 25.0% |
| ! | TTCTCCAAAATCAAATCTTT+CGG | - | chr5.4:15716975-15716994 | MS.gene72660:CDS | 25.0% |
| !! | GTTTCATTGTATGGTTTTTA+AGG | - | chr5.4:15717832-15717851 | MS.gene72660:CDS | 25.0% |
| !!! | GTTGTTTTCCATTTCAATTA+GGG | - | chr5.4:15717195-15717214 | MS.gene72660:CDS | 25.0% |
| !!! | TCTATATTATTTGGTGCTTT+TGG | - | chr5.4:15717497-15717516 | MS.gene72660:CDS | 25.0% |
| AAGATAAAGAGAAATTTGGG+AGG | - | chr5.4:15717447-15717466 | MS.gene72660:CDS | 30.0% | |
| ACATCAGCAAAAATACTCAA+AGG | + | chr5.4:15717254-15717273 | None:intergenic | 30.0% | |
| AGATAAAGAGAAATTTGGGA+GGG | - | chr5.4:15717448-15717467 | MS.gene72660:CDS | 30.0% | |
| ATCAGCAAAAATACTCAAAG+GGG | + | chr5.4:15717252-15717271 | None:intergenic | 30.0% | |
| CATCAGCAAAAATACTCAAA+GGG | + | chr5.4:15717253-15717272 | None:intergenic | 30.0% | |
| CATGCAAAATAGACCAAATT+TGG | - | chr5.4:15717325-15717344 | MS.gene72660:CDS | 30.0% | |
| GAATTCAACCCTAATTGAAA+TGG | + | chr5.4:15717206-15717225 | None:intergenic | 30.0% | |
| TAAACAGGATTCATCATCAA+AGG | + | chr5.4:15717644-15717663 | None:intergenic | 30.0% | |
| ! | ACCAAATTTGGAAGCTTTTA+AGG | - | chr5.4:15717337-15717356 | MS.gene72660:CDS | 30.0% |
| ! | ATAGGTGTTATGGTTCAATT+AGG | - | chr5.4:15717590-15717609 | MS.gene72660:CDS | 30.0% |
| ! | CCAAATTTGGAAGCTTTTAA+GGG | - | chr5.4:15717338-15717357 | MS.gene72660:CDS | 30.0% |
| ! | TAGGTGTTATGGTTCAATTA+GGG | - | chr5.4:15717591-15717610 | MS.gene72660:CDS | 30.0% |
| ! | TGATTCTAGGTATTGTTTGT+GGG | - | chr5.4:15717688-15717707 | MS.gene72660:CDS | 30.0% |
| !! | AATCTCTGAAACAGATGTAT+AGG | + | chr5.4:15717933-15717952 | None:intergenic | 30.0% |
| !! | AGATTTGATTTTGGAGAAAC+CGG | + | chr5.4:15716973-15716992 | None:intergenic | 30.0% |
| !! | ATGGTTTTTAAGGAAGAGTT+GGG | - | chr5.4:15717842-15717861 | MS.gene72660:CDS | 30.0% |
| !! | GGTTGTTTTCCATTTCAATT+AGG | - | chr5.4:15717194-15717213 | MS.gene72660:CDS | 30.0% |
| !! | GTTTTAGGCTATTTTGCTTT+TGG | - | chr5.4:15717521-15717540 | MS.gene72660:CDS | 30.0% |
| !! | TATGGTTTTTAAGGAAGAGT+TGG | - | chr5.4:15717841-15717860 | MS.gene72660:CDS | 30.0% |
| !! | TTTATGAGGTTTTTGAGAGA+AGG | - | chr5.4:15717660-15717679 | MS.gene72660:CDS | 30.0% |
| !!! | CTGATTTTTTGTCACTTGTT+GGG | - | chr5.4:15717768-15717787 | MS.gene72660:CDS | 30.0% |
| !!! | GGTGTTTTTTTCTATGGTAT+TGG | - | chr5.4:15717365-15717384 | MS.gene72660:CDS | 30.0% |
| !!! | GGTTTTGGTGTTTTTTTCTA+TGG | - | chr5.4:15717359-15717378 | MS.gene72660:CDS | 30.0% |
| !!! | TTGCTGTTTATGCTTTTGAA+GGG | - | chr5.4:15717390-15717409 | MS.gene72660:CDS | 30.0% |
| AAATACTCAAAGGGGCTAAA+TGG | + | chr5.4:15717244-15717263 | None:intergenic | 35.0% | |
| AATACTCAAAGGGGCTAAAT+GGG | + | chr5.4:15717243-15717262 | None:intergenic | 35.0% | |
| AATCAAATCTTTCGGCGATT+TGG | - | chr5.4:15716983-15717002 | MS.gene72660:CDS | 35.0% | |
| AATTTAGGTCAAGGTGTGAT+AGG | - | chr5.4:15717572-15717591 | MS.gene72660:CDS | 35.0% | |
| ACCATACAATGAAACAAAGC+AGG | + | chr5.4:15717827-15717846 | None:intergenic | 35.0% | |
| ATCAAATCTTTCGGCGATTT+GGG | - | chr5.4:15716984-15717003 | MS.gene72660:CDS | 35.0% | |
| CCCTTAAAAGCTTCCAAATT+TGG | + | chr5.4:15717341-15717360 | None:intergenic | 35.0% | |
| CCGTTAAACCGATGAAAATA+GGG | + | chr5.4:15717154-15717173 | None:intergenic | 35.0% | |
| CTCTCAAAAACCTCATAAAC+AGG | + | chr5.4:15717659-15717678 | None:intergenic | 35.0% | |
| GATGATGAATCCTGTTTATG+AGG | - | chr5.4:15717646-15717665 | MS.gene72660:CDS | 35.0% | |
| GCGAAAAGTTTGTATCTTTG+GGG | - | chr5.4:15717173-15717192 | MS.gene72660:CDS | 35.0% | |
| GGCGAAAAGTTTGTATCTTT+GGG | - | chr5.4:15717172-15717191 | MS.gene72660:CDS | 35.0% | |
| TAAACCGATGAAAATAGGGA+CGG | + | chr5.4:15717150-15717169 | None:intergenic | 35.0% | |
| TCTTTAGTCTCACTTTCCAA+AGG | + | chr5.4:15717431-15717450 | None:intergenic | 35.0% | |
| TTCAGAGATTCTTTCTCCTA+AGG | - | chr5.4:15717943-15717962 | MS.gene72660:CDS | 35.0% | |
| ! | AGAAATTTGGGAGGGTTTTA+GGG | - | chr5.4:15717456-15717475 | MS.gene72660:CDS | 35.0% |
| ! | AGTAGTGTTTGTGTTGTTCT+TGG | - | chr5.4:15717791-15717810 | MS.gene72660:CDS | 35.0% |
| ! | GTGATTCTAGGTATTGTTTG+TGG | - | chr5.4:15717687-15717706 | MS.gene72660:CDS | 35.0% |
| ! | TGCTTTTGGTGAAGAAACTA+AGG | - | chr5.4:15717535-15717554 | MS.gene72660:CDS | 35.0% |
| ! | TTTTGAATTGGGAAGAAAGG+GGG | + | chr5.4:15716779-15716798 | None:intergenic | 35.0% |
| !! | ACCTGCTTTGTTTCATTGTA+TGG | - | chr5.4:15717823-15717842 | MS.gene72660:CDS | 35.0% |
| !! | AGAGAAGGTTTTGTGATTCT+AGG | - | chr5.4:15717675-15717694 | MS.gene72660:CDS | 35.0% |
| !! | ATCGCCGAAAGATTTGATTT+TGG | + | chr5.4:15716982-15717001 | None:intergenic | 35.0% |
| !! | GGATTTGTTGTTGCTGTTTA+TGG | - | chr5.4:15717905-15717924 | MS.gene72660:CDS | 35.0% |
| !! | GTTTATGCTTTTGAAGGGAT+TGG | - | chr5.4:15717395-15717414 | MS.gene72660:CDS | 35.0% |
| !! | GTTTTGAATTGGGAAGAAAG+GGG | + | chr5.4:15716780-15716799 | None:intergenic | 35.0% |
| !! | TTCTGCTAAGAGTGTTGTTA+TGG | - | chr5.4:15717283-15717302 | MS.gene72660:CDS | 35.0% |
| !! | TTGGAAGCTTTTAAGGGTTT+TGG | - | chr5.4:15717344-15717363 | MS.gene72660:CDS | 35.0% |
| !! | TTTTTAAGGAAGAGTTGGGT+TGG | - | chr5.4:15717846-15717865 | MS.gene72660:CDS | 35.0% |
| !!! | AGGTTTTGAATTGGGAAGAA+AGG | + | chr5.4:15716782-15716801 | None:intergenic | 35.0% |
| !!! | CCCTATTTTCATCGGTTTAA+CGG | - | chr5.4:15717151-15717170 | MS.gene72660:CDS | 35.0% |
| !!! | GCTGATTTTTTGTCACTTGT+TGG | - | chr5.4:15717767-15717786 | MS.gene72660:CDS | 35.0% |
| !!! | GGTTTTGAATTGGGAAGAAA+GGG | + | chr5.4:15716781-15716800 | None:intergenic | 35.0% |
| !!! | GTTGCTGTTTATGCTTTTGA+AGG | - | chr5.4:15717389-15717408 | MS.gene72660:CDS | 35.0% |
| !!! | TTTGGTGCTTTTGGTGTTTT+AGG | - | chr5.4:15717506-15717525 | MS.gene72660:CDS | 35.0% |
| AAGCACAATCATGGAGTCAA+CGG | + | chr5.4:15717042-15717061 | None:intergenic | 40.0% | |
| ACTTTATCATTTCTCACCGC+CGG | - | chr5.4:15717107-15717126 | MS.gene72660:CDS | 40.0% | |
| ATGATTGTGCTTTCACAAGC+TGG | - | chr5.4:15717050-15717069 | MS.gene72660:CDS | 40.0% | |
| CAACGGAAAAACGACCTAAT+GGG | + | chr5.4:15717025-15717044 | None:intergenic | 40.0% | |
| CGGCGAAAAGTTTGTATCTT+TGG | - | chr5.4:15717171-15717190 | MS.gene72660:CDS | 40.0% | |
| GCCGTTAAACCGATGAAAAT+AGG | + | chr5.4:15717155-15717174 | None:intergenic | 40.0% | |
| TCAACGGAAAAACGACCTAA+TGG | + | chr5.4:15717026-15717045 | None:intergenic | 40.0% | |
| TCAAGGTGTGATAGGTGTTA+TGG | - | chr5.4:15717580-15717599 | MS.gene72660:CDS | 40.0% | |
| TGATTGTGCTTTCACAAGCT+GGG | - | chr5.4:15717051-15717070 | MS.gene72660:CDS | 40.0% | |
| TTTGAATTGGGAAGAAAGGG+GGG | + | chr5.4:15716778-15716797 | None:intergenic | 40.0% | |
| ! | AGCTTGTGAAAGCACAATCA+TGG | + | chr5.4:15717051-15717070 | None:intergenic | 40.0% |
| ! | GAAACCGTCCCTATTTTCAT+CGG | - | chr5.4:15717143-15717162 | MS.gene72660:CDS | 40.0% |
| ! | GAGAAATTTGGGAGGGTTTT+AGG | - | chr5.4:15717455-15717474 | MS.gene72660:CDS | 40.0% |
| ! | GATTTGGGTTTCACCATTTG+TGG | - | chr5.4:15716999-15717018 | MS.gene72660:CDS | 40.0% |
| !! | GATTGGAATGGTTTTGCCTT+TGG | - | chr5.4:15717412-15717431 | MS.gene72660:CDS | 40.0% |
| !! | TGCTTTTGAAGGGATTGGAA+TGG | - | chr5.4:15717400-15717419 | MS.gene72660:CDS | 40.0% |
| !!! | GTTGGCGAAGGTTTTGAATT+GGG | + | chr5.4:15716790-15716809 | None:intergenic | 40.0% |
| !!! | TGTTGGCGAAGGTTTTGAAT+TGG | + | chr5.4:15716791-15716810 | None:intergenic | 40.0% |
| AACATCTTCATCGCCATCGT+CGG | - | chr5.4:15716807-15716826 | MS.gene72660:CDS | 45.0% | |
| GAAAATAGGGACGGTTTCAC+CGG | + | chr5.4:15717141-15717160 | None:intergenic | 45.0% | |
| GAGATGCTTGGTTTCAGATG+GGG | - | chr5.4:15717868-15717887 | MS.gene72660:CDS | 45.0% | |
| GGAGATGCTTGGTTTCAGAT+GGG | - | chr5.4:15717867-15717886 | MS.gene72660:CDS | 45.0% | |
| TGGAGATGCTTGGTTTCAGA+TGG | - | chr5.4:15717866-15717885 | MS.gene72660:CDS | 45.0% | |
| TTCACCATTTGTGGCCCATT+AGG | - | chr5.4:15717008-15717027 | MS.gene72660:CDS | 45.0% | |
| TTGAATTGGGAAGAAAGGGG+GGG | + | chr5.4:15716777-15716796 | None:intergenic | 45.0% | |
| ! | CTAGGTATTGTTTGTGGGTG+AGG | - | chr5.4:15717693-15717712 | MS.gene72660:CDS | 45.0% |
| ! | GATGGGGCCATTATGGTTTT+TGG | - | chr5.4:15717884-15717903 | MS.gene72660:CDS | 45.0% |
| !! | GATTTTGGAGAAACCGGTGA+TGG | + | chr5.4:15716967-15716986 | None:intergenic | 45.0% |
| !!! | AGGGTTTTAGGGTTAGGGAT+GGG | - | chr5.4:15717467-15717486 | MS.gene72660:CDS | 45.0% |
| !!! | GTTGGTTTTGGTGGTGAGTT+TGG | - | chr5.4:15717721-15717740 | MS.gene72660:CDS | 45.0% |
| !!! | TTGGGAGGGTTTTAGGGTTA+GGG | - | chr5.4:15717462-15717481 | MS.gene72660:CDS | 45.0% |
| !!! | TTTGGGAGGGTTTTAGGGTT+AGG | - | chr5.4:15717461-15717480 | MS.gene72660:CDS | 45.0% |
| CCTTACTCCTTCAAACGCAC+CGG | - | chr5.4:15716849-15716868 | MS.gene72660:CDS | 50.0% | |
| CGGAAACTCGAATCCATCAC+CGG | - | chr5.4:15716951-15716970 | MS.gene72660:CDS | 50.0% | |
| CGGTGCGTTTGAAGGAGTAA+GGG | + | chr5.4:15716851-15716870 | None:intergenic | 50.0% | |
| GACGATGGCGATGAAGATGT+TGG | + | chr5.4:15716808-15716827 | None:intergenic | 50.0% | |
| GGGGGGTGAGTTAGTAAGAA+GGG | + | chr5.4:15716760-15716779 | None:intergenic | 50.0% | |
| GGGGGTGAGTTAGTAAGAAG+GGG | + | chr5.4:15716759-15716778 | None:intergenic | 50.0% | |
| GGGGTGAGTTAGTAAGAAGG+GGG | + | chr5.4:15716758-15716777 | None:intergenic | 50.0% | |
| GGGTGAGTTAGTAAGAAGGG+GGG | + | chr5.4:15716757-15716776 | None:intergenic | 50.0% | |
| GGTATTGTTTGTGGGTGAGG+TGG | - | chr5.4:15717696-15717715 | MS.gene72660:CDS | 50.0% | |
| GGTTTCAGATGGGGCCATTA+TGG | - | chr5.4:15717877-15717896 | MS.gene72660:CDS | 50.0% | |
| TTTGTGGGTGAGGTGGTTGT+TGG | - | chr5.4:15717703-15717722 | MS.gene72660:CDS | 50.0% | |
| ! | ACGACCTAATGGGCCACAAA+TGG | + | chr5.4:15717015-15717034 | None:intergenic | 50.0% |
| !! | AGAGTTGGGTTGGAGATGCT+TGG | - | chr5.4:15717856-15717875 | MS.gene72660:CDS | 50.0% |
| !! | CGGTGATGGATTCGAGTTTC+CGG | + | chr5.4:15716953-15716972 | None:intergenic | 50.0% |
| !! | GGTGAGTTTGGTGGCACTTT+TGG | - | chr5.4:15717733-15717752 | MS.gene72660:CDS | 50.0% |
| !!! | GAGGGTTTTAGGGTTAGGGA+TGG | - | chr5.4:15717466-15717485 | MS.gene72660:CDS | 50.0% |
| !!! | GAGGTGGTTGTTGGTTTTGG+TGG | - | chr5.4:15717712-15717731 | MS.gene72660:CDS | 50.0% |
| !!! | GGTGAGGTGGTTGTTGGTTT+TGG | - | chr5.4:15717709-15717728 | MS.gene72660:CDS | 50.0% |
| !!! | GGTTTTGGTGGTGAGTTTGG+TGG | - | chr5.4:15717724-15717743 | MS.gene72660:CDS | 50.0% |
| AATAGGGACGGTTTCACCGG+TGG | + | chr5.4:15717138-15717157 | None:intergenic | 55.0% | |
| CCGGTGCGTTTGAAGGAGTA+AGG | + | chr5.4:15716852-15716871 | None:intergenic | 55.0% | |
| GGCGATGAAGATGTTGGCGA+AGG | + | chr5.4:15716802-15716821 | None:intergenic | 55.0% | |
| GGGGGGGTGAGTTAGTAAGA+AGG | + | chr5.4:15716761-15716780 | None:intergenic | 55.0% | |
| GTGGTAGGTGAGGTAAGCGA+TGG | + | chr5.4:15716904-15716923 | None:intergenic | 55.0% | |
| TGAGGTAAGCGATGGCGAAG+AGG | + | chr5.4:15716896-15716915 | None:intergenic | 55.0% | |
| !! | AGAGGTTGATGAGACCGGTG+AGG | + | chr5.4:15716878-15716897 | None:intergenic | 55.0% |
| !! | GGCGAAGAGGTTGATGAGAC+CGG | + | chr5.4:15716883-15716902 | None:intergenic | 55.0% |
| GAGGTAGCCGGTGCGTTTGA+AGG | + | chr5.4:15716859-15716878 | None:intergenic | 60.0% | |
| GATGAGACCGGTGAGGTAGC+CGG | + | chr5.4:15716871-15716890 | None:intergenic | 60.0% | |
| GGAGCATGCAGTGGTAGGTG+AGG | + | chr5.4:15716914-15716933 | None:intergenic | 60.0% | |
| GGTTTCACCGGTGGAGTCAC+CGG | + | chr5.4:15717129-15717148 | None:intergenic | 60.0% | |
| GTAAGGGAGACCGAGAACGC+CGG | + | chr5.4:15716835-15716854 | None:intergenic | 60.0% | |
| TCCTCCTCGTCAACACTCGC+CGG | - | chr5.4:15716931-15716950 | MS.gene72660:CDS | 60.0% | |
| TGGGTAGGGTGGGAGTGAGT+AGG | + | chr5.4:15716724-15716743 | None:intergenic | 60.0% | |
| TGTCTTCGCGTGGGTAGGGT+GGG | + | chr5.4:15716734-15716753 | None:intergenic | 60.0% | |
| ! | GAGGAGGAGCATGCAGTGGT+AGG | + | chr5.4:15716919-15716938 | None:intergenic | 60.0% |
| ! | TGACGAGGAGGAGCATGCAG+TGG | + | chr5.4:15716923-15716942 | None:intergenic | 60.0% |
| !! | AAACGCACCGGCTACCTCAC+CGG | - | chr5.4:15716861-15716880 | MS.gene72660:CDS | 60.0% |
| !! | GTTTCCGGCGAGTGTTGACG+AGG | + | chr5.4:15716938-15716957 | None:intergenic | 60.0% |
| GTGTCTTCGCGTGGGTAGGG+TGG | + | chr5.4:15716735-15716754 | None:intergenic | 65.0% | |
| TTCACCGGTGGAGTCACCGG+CGG | + | chr5.4:15717126-15717145 | None:intergenic | 65.0% | |
| TTCATCGCCATCGTCGGCGC+CGG | - | chr5.4:15716813-15716832 | MS.gene72660:CDS | 65.0% | |
| ! | GGGGTGTCTTCGCGTGGGTA+GGG | + | chr5.4:15716738-15716757 | None:intergenic | 65.0% |
| !! | AGAAGGGGGGTGTCTTCGCG+TGG | + | chr5.4:15716744-15716763 | None:intergenic | 65.0% |
| !! | GAAGGGGGGTGTCTTCGCGT+GGG | + | chr5.4:15716743-15716762 | None:intergenic | 65.0% |
| !! | TCCGGCGAGTGTTGACGAGG+AGG | + | chr5.4:15716935-15716954 | None:intergenic | 65.0% |
| CTCACCGCCGGTGACTCCAC+CGG | - | chr5.4:15717119-15717138 | MS.gene72660:CDS | 70.0% | |
| !! | ATCGTCGGCGCCGGCGTTCT+CGG | - | chr5.4:15716822-15716841 | MS.gene72660:CDS | 70.0% |
| !! | GGGGGTGTCTTCGCGTGGGT+AGG | + | chr5.4:15716739-15716758 | None:intergenic | 70.0% |
| !! | GAGAACGCCGGCGCCGACGA+TGG | + | chr5.4:15716823-15716842 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 15716693 | 15717970 | 15716693 | ID=MS.gene72660 |
| chr5.4 | mRNA | 15716693 | 15717970 | 15716693 | ID=MS.gene72660.t1;Parent=MS.gene72660 |
| chr5.4 | exon | 15716693 | 15717970 | 15716693 | ID=MS.gene72660.t1.exon1;Parent=MS.gene72660.t1 |
| chr5.4 | CDS | 15716693 | 15717970 | 15716693 | ID=cds.MS.gene72660.t1;Parent=MS.gene72660.t1 |
| Gene Sequence |
| Protein sequence |
