Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73771.t1 | XP_003624347.1 | 90 | 241 | 18 | 4 | 1 | 239 | 1 | 237 | 5.20E-116 | 427.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73771.t1 | Q9LF14 | 77.0 | 187 | 43 | 0 | 50 | 236 | 37 | 223 | 7.0e-85 | 315.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73771.t1 | G7KUB5 | 90.0 | 241 | 18 | 4 | 1 | 239 | 1 | 237 | 3.8e-116 | 427.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051858 | MS.gene73771 | 0.801688 | 8.00E-49 | -1.69E-46 |
| MS.gene052322 | MS.gene73771 | 0.803098 | 4.10E-49 | -1.69E-46 |
| MS.gene052870 | MS.gene73771 | 0.807624 | 4.62E-50 | -1.69E-46 |
| MS.gene052872 | MS.gene73771 | 0.802754 | 4.83E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene73771 | 0.807553 | 4.78E-50 | -1.69E-46 |
| MS.gene056897 | MS.gene73771 | 0.82927 | 5.65E-55 | -1.69E-46 |
| MS.gene057196 | MS.gene73771 | 0.822008 | 2.98E-53 | -1.69E-46 |
| MS.gene058444 | MS.gene73771 | 0.813063 | 3.09E-51 | -1.69E-46 |
| MS.gene060832 | MS.gene73771 | 0.819853 | 9.34E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08762 | MS.gene73771 | PPI |
| MS.gene85927 | MS.gene73771 | PPI |
| MS.gene73771 | MS.gene53154 | PPI |
| MS.gene55353 | MS.gene73771 | PPI |
| MS.gene09080 | MS.gene73771 | PPI |
| MS.gene78610 | MS.gene73771 | PPI |
| MS.gene73771 | MS.gene023541 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73771.t1 | MTR_7g082240 | 90.041 | 241 | 18 | 4 | 1 | 239 | 1 | 237 | 1.22e-154 | 430 |
| MS.gene73771.t1 | MTR_8g095500 | 87.500 | 224 | 19 | 3 | 16 | 239 | 15 | 229 | 4.81e-138 | 387 |
| MS.gene73771.t1 | MTR_8g085910 | 59.218 | 179 | 73 | 0 | 58 | 236 | 17 | 195 | 1.73e-77 | 233 |
| MS.gene73771.t1 | MTR_8g103890 | 49.309 | 217 | 110 | 0 | 20 | 236 | 26 | 242 | 6.69e-76 | 231 |
| MS.gene73771.t1 | MTR_8g103890 | 50.877 | 171 | 84 | 0 | 20 | 190 | 26 | 196 | 1.77e-58 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73771.t1 | AT5G16140 | 69.159 | 214 | 63 | 1 | 27 | 237 | 11 | 224 | 7.77e-110 | 316 |
| MS.gene73771.t1 | AT5G16140 | 69.159 | 214 | 63 | 1 | 27 | 237 | 11 | 224 | 7.77e-110 | 316 |
| MS.gene73771.t1 | AT5G38290 | 63.675 | 234 | 78 | 3 | 4 | 236 | 6 | 233 | 1.58e-106 | 308 |
| MS.gene73771.t1 | AT5G38290 | 63.675 | 234 | 78 | 3 | 4 | 236 | 2 | 229 | 1.70e-106 | 308 |
| MS.gene73771.t1 | AT1G18440 | 57.778 | 180 | 76 | 0 | 58 | 237 | 94 | 273 | 3.28e-79 | 240 |
| MS.gene73771.t1 | AT5G19830 | 58.333 | 180 | 75 | 0 | 56 | 235 | 16 | 195 | 3.48e-76 | 230 |
| MS.gene73771.t1 | AT1G18440 | 61.905 | 105 | 40 | 0 | 58 | 162 | 94 | 198 | 2.38e-45 | 151 |
Find 59 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGAAACCCTCCTGGAACTA+TGG | 0.238093 | 7.3:+25540902 | MS.gene73771:CDS |
| ATAATGAAAGTTCCTTCTTC+TGG | 0.257421 | 7.3:-25538913 | None:intergenic |
| TTGATATGTACAGGTTCTAT+TGG | 0.279222 | 7.3:+25539457 | MS.gene73771:intron |
| TCCTTGGCTTGTTGTTGGCT+TGG | 0.315305 | 7.3:+25539034 | MS.gene73771:CDS |
| TGATGCCCATGTCCACCTTT+AGG | 0.328247 | 7.3:-25539927 | None:intergenic |
| CCTTGGCTTGTTGTTGGCTT+GGG | 0.334876 | 7.3:+25539035 | MS.gene73771:CDS |
| TGAAGCTTTAAAACACCATT+TGG | 0.358207 | 7.3:-25539903 | None:intergenic |
| AAATACTTACCACTAGAATA+TGG | 0.382387 | 7.3:-25539776 | None:intergenic |
| TGAGGTTTCGCCAACAAAAC+TGG | 0.384292 | 7.3:-25539487 | None:intergenic |
| CTAAAATTCATGTATGTTTG+AGG | 0.385508 | 7.3:-25539505 | None:intergenic |
| TACACTCCTTGGCTTGTTGT+TGG | 0.391253 | 7.3:+25539029 | MS.gene73771:CDS |
| TTAGGACTTTAGTGCTCAAT+GGG | 0.394097 | 7.3:+25541365 | MS.gene73771:CDS |
| GCTCTTAAATCCATAGTTCC+AGG | 0.394847 | 7.3:-25540912 | None:intergenic |
| AAATAATTGATAGTCTTTCT+CGG | 0.408351 | 7.3:+25539301 | MS.gene73771:CDS |
| ATGGCAGGTTGATGAGTCAT+TGG | 0.410508 | 7.3:+25541324 | MS.gene73771:intron |
| GTGCCATGGTATTTATATCC+AGG | 0.423589 | 7.3:-25539062 | None:intergenic |
| GTTAGGACTTTAGTGCTCAA+TGG | 0.425108 | 7.3:+25541364 | MS.gene73771:CDS |
| TAATGAAAGTTCCTTCTTCT+GGG | 0.432772 | 7.3:-25538912 | None:intergenic |
| AAAGTTCCTTCTTCTGGGAT+AGG | 0.460451 | 7.3:-25538907 | None:intergenic |
| AGCAAGGAGTTCAAGCTGTT+AGG | 0.464491 | 7.3:+25541347 | MS.gene73771:CDS |
| TGATGCACCTATTCCAATCA+AGG | 0.467413 | 7.3:-25539361 | None:intergenic |
| GTTAAAGATAAGGTTGGACT+TGG | 0.472315 | 7.3:-25538885 | None:intergenic |
| GTAGGAATCGGAAACCCTCC+TGG | 0.472720 | 7.3:+25540894 | MS.gene73771:intron |
| CTTTAACCTATCCCAGAAGA+AGG | 0.477782 | 7.3:+25538901 | MS.gene73771:CDS |
| TCTGGGATAGGTTAAAGATA+AGG | 0.494074 | 7.3:-25538895 | None:intergenic |
| TCTTCTACAAAAGTTCAGTT+CGG | 0.503124 | 7.3:+25540938 | MS.gene73771:CDS |
| CTTCAACCTAAAGGTGGACA+TGG | 0.505877 | 7.3:+25539921 | MS.gene73771:CDS |
| GTTGTTGGCTTGGGTAACCC+TGG | 0.508399 | 7.3:+25539044 | MS.gene73771:CDS |
| GTGGACATGGGCATCACAAT+GGG | 0.516901 | 7.3:+25539934 | MS.gene73771:CDS |
| TCTACAAAAGTTCAGTTCGG+TGG | 0.519730 | 7.3:+25540941 | MS.gene73771:CDS |
| CAATGGAGATACTAATAAAG+TGG | 0.520031 | 7.3:+25539004 | MS.gene73771:CDS |
| CTGTGGAACCGAACAACGAA+CGG | 0.524853 | 7.3:-25538973 | None:intergenic |
| CAGTTCGGTGGAAAGAAAGC+AGG | 0.525207 | 7.3:+25540953 | MS.gene73771:CDS |
| TGCCATGGTATTTATATCCA+GGG | 0.533529 | 7.3:-25539061 | None:intergenic |
| ATAAAGTGGAATACACTCCT+TGG | 0.538129 | 7.3:+25539018 | MS.gene73771:CDS |
| AATGTGATTGGCCATTTGGA+TGG | 0.549742 | 7.3:+25540756 | MS.gene73771:CDS |
| GATAGTCTTTCTCGGTCAGA+AGG | 0.550469 | 7.3:+25539309 | MS.gene73771:CDS |
| TCTCCATTGTTATTTGTCTG+TGG | 0.553915 | 7.3:-25538990 | None:intergenic |
| GCTTTAAAACACCATTTGGA+AGG | 0.554239 | 7.3:-25539899 | None:intergenic |
| GATGAAACTAGCCTTCCAAA+TGG | 0.554723 | 7.3:+25539888 | MS.gene73771:CDS |
| GGATAGGTTAAAGATAAGGT+TGG | 0.559820 | 7.3:-25538891 | None:intergenic |
| AGCATACACAATGTGCTAAG+TGG | 0.578322 | 7.3:-25541502 | None:intergenic |
| TTAAAGCTTCAACCTAAAGG+TGG | 0.579023 | 7.3:+25539915 | MS.gene73771:CDS |
| GGTGGACATGGGCATCACAA+TGG | 0.579435 | 7.3:+25539933 | MS.gene73771:CDS |
| AATCACGAGAACCATCCAAA+TGG | 0.582644 | 7.3:-25540767 | None:intergenic |
| CCCAAGCCAACAACAAGCCA+AGG | 0.596759 | 7.3:-25539035 | None:intergenic |
| TACCACTAGAATATGGCGCA+AGG | 0.599906 | 7.3:-25539769 | None:intergenic |
| ACTCGATAATATGCAGCAAG+AGG | 0.600246 | 7.3:-25539744 | None:intergenic |
| TTACATTGTGTCTAGTGCCA+TGG | 0.610008 | 7.3:-25539076 | None:intergenic |
| AACTAACCGATTGCAAGTCG+AGG | 0.618872 | 7.3:-25540792 | None:intergenic |
| TTAAATCCATAGTTCCAGGA+GGG | 0.631727 | 7.3:-25540908 | None:intergenic |
| AATGTGCTAAGTGGTAAACA+TGG | 0.637460 | 7.3:-25541493 | None:intergenic |
| GTTGATGAGTCATTGGAGCA+AGG | 0.639313 | 7.3:+25541331 | MS.gene73771:CDS |
| GCCCTTGCGCCATATTCTAG+TGG | 0.639540 | 7.3:+25539767 | MS.gene73771:CDS |
| TTCAACCTAAAGGTGGACAT+GGG | 0.647848 | 7.3:+25539922 | MS.gene73771:CDS |
| ACCACTAGAATATGGCGCAA+GGG | 0.651637 | 7.3:-25539768 | None:intergenic |
| AACCCTGGATATAAATACCA+TGG | 0.657071 | 7.3:+25539059 | MS.gene73771:CDS |
| GTTCCACAGACAAATAACAA+TGG | 0.675048 | 7.3:+25538987 | MS.gene73771:CDS |
| CTTAAATCCATAGTTCCAGG+AGG | 0.685463 | 7.3:-25540909 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTTATTATTTTAA+TGG | + | chr7.3:25541305-25541324 | MS.gene73771:intron | 0.0% |
| !! | AATTAAGATATGTATAGTAA+GGG | + | chr7.3:25540128-25540147 | MS.gene73771:intron | 15.0% |
| !! | AATTGAATAAAACAAATGAA+TGG | - | chr7.3:25539107-25539126 | None:intergenic | 15.0% |
| !! | CAAATTTCAAATACAAAAAA+AGG | - | chr7.3:25541273-25541292 | None:intergenic | 15.0% |
| !! | CTATAATAACAAAAAATTAG+TGG | - | chr7.3:25541466-25541485 | None:intergenic | 15.0% |
| !! | TTTAATAATTTGATATGTAC+AGG | + | chr7.3:25539448-25539467 | MS.gene73771:intron | 15.0% |
| !!! | ATTTTTATTATTTTAATGGC+AGG | + | chr7.3:25541309-25541328 | MS.gene73771:intron | 15.0% |
| !!! | CTCATTTTTAATATTGTTAA+AGG | + | chr7.3:25539716-25539735 | MS.gene73771:intron | 15.0% |
| !!! | TATAAAGAGTTTTTAAGTAT+CGG | + | chr7.3:25539987-25540006 | MS.gene73771:intron | 15.0% |
| !!! | TTTTAATATTGTTAAAGGTT+GGG | + | chr7.3:25539721-25539740 | MS.gene73771:intron | 15.0% |
| !!! | TTTTTAATATTGTTAAAGGT+TGG | + | chr7.3:25539720-25539739 | MS.gene73771:intron | 15.0% |
| !! | AAAAAATTAGTGGTACATTT+AGG | - | chr7.3:25541456-25541475 | None:intergenic | 20.0% |
| !! | AAGAGTTAAAAGAATTTCAA+CGG | - | chr7.3:25540203-25540222 | None:intergenic | 20.0% |
| !! | AGTAACAAATTTGACTAAAA+TGG | + | chr7.3:25541136-25541155 | MS.gene73771:intron | 20.0% |
| !! | ATGTCAATAGATTCAATTTA+GGG | + | chr7.3:25541398-25541417 | MS.gene73771:intron | 20.0% |
| !! | CAAGATTTAAGTAATTATCT+AGG | - | chr7.3:25540447-25540466 | None:intergenic | 20.0% |
| !! | GAATTAAGATATGTATAGTA+AGG | + | chr7.3:25540127-25540146 | MS.gene73771:intron | 20.0% |
| !!! | AAACATACATGAATTTTAGT+GGG | + | chr7.3:25539509-25539528 | MS.gene73771:CDS | 20.0% |
| !!! | AAATAATTGATAGTCTTTCT+CGG | + | chr7.3:25539301-25539320 | MS.gene73771:CDS | 20.0% |
| !!! | AATTTGTTGATGTTTTTCTT+TGG | + | chr7.3:25539831-25539850 | MS.gene73771:intron | 20.0% |
| !!! | TTTTCTATACATTTTAGTGA+TGG | + | chr7.3:25540503-25540522 | MS.gene73771:intron | 20.0% |
| ! | AAATACTTACCACTAGAATA+TGG | - | chr7.3:25539779-25539798 | None:intergenic | 25.0% |
| ! | AATATTATACATGTTACCCA+TGG | - | chr7.3:25540470-25540489 | None:intergenic | 25.0% |
| ! | AATTACTTAAATCTTGCCAT+GGG | + | chr7.3:25540451-25540470 | MS.gene73771:intron | 25.0% |
| ! | AATTGAATCTATTGACATGA+TGG | - | chr7.3:25541396-25541415 | None:intergenic | 25.0% |
| ! | AGCAAATTATAAGTTAGACA+AGG | + | chr7.3:25541180-25541199 | MS.gene73771:intron | 25.0% |
| ! | ATACAATCAAAAACCTTGAT+TGG | + | chr7.3:25539348-25539367 | MS.gene73771:CDS | 25.0% |
| ! | CATGTCAATAGATTCAATTT+AGG | + | chr7.3:25541397-25541416 | MS.gene73771:intron | 25.0% |
| ! | CCAAATATGATTTCAAGAAT+AGG | + | chr7.3:25540012-25540031 | MS.gene73771:intron | 25.0% |
| ! | CCTATTCTTGAAATCATATT+TGG | - | chr7.3:25540015-25540034 | None:intergenic | 25.0% |
| ! | CTAAAATTCATGTATGTTTG+AGG | - | chr7.3:25539508-25539527 | None:intergenic | 25.0% |
| ! | CTGTAAACCTAGATAAAAAA+GGG | + | chr7.3:25540355-25540374 | MS.gene73771:intron | 25.0% |
| ! | GAAATTATGAAGTCTATAAC+TGG | + | chr7.3:25540709-25540728 | MS.gene73771:intron | 25.0% |
| ! | TAATTACTTAAATCTTGCCA+TGG | + | chr7.3:25540450-25540469 | MS.gene73771:intron | 25.0% |
| ! | TACAGATTGAAAAATGTGAT+TGG | + | chr7.3:25540744-25540763 | MS.gene73771:intron | 25.0% |
| ! | TATACTCTGATAAATAACCA+AGG | - | chr7.3:25540851-25540870 | None:intergenic | 25.0% |
| ! | TCTGTAAACCTAGATAAAAA+AGG | + | chr7.3:25540354-25540373 | MS.gene73771:intron | 25.0% |
| ! | TTAAATAAGTCACGAAAACA+AGG | - | chr7.3:25540642-25540661 | None:intergenic | 25.0% |
| ! | TTACTTCATGAATAATGAGA+TGG | + | chr7.3:25540063-25540082 | MS.gene73771:intron | 25.0% |
| ! | TTATCTAGGTTTACAGATTA+TGG | - | chr7.3:25540351-25540370 | None:intergenic | 25.0% |
| ! | TTGTATGGATAATACAAAGA+CGG | + | chr7.3:25540559-25540578 | MS.gene73771:intron | 25.0% |
| !! | AAATTGCACTTTTACTTTGT+AGG | + | chr7.3:25540876-25540895 | MS.gene73771:intron | 25.0% |
| !! | CAAAAAAAGGTATAATTTGC+AGG | - | chr7.3:25541260-25541279 | None:intergenic | 25.0% |
| !! | CAAACATACATGAATTTTAG+TGG | + | chr7.3:25539508-25539527 | MS.gene73771:CDS | 25.0% |
| !! | GTTTGTGGAAATTTTTATGT+AGG | + | chr7.3:25539860-25539879 | MS.gene73771:intron | 25.0% |
| !! | TTGTACTTAATCTGATTTTG+TGG | + | chr7.3:25539254-25539273 | MS.gene73771:intron | 25.0% |
| !!! | AACATACATGAATTTTAGTG+GGG | + | chr7.3:25539510-25539529 | MS.gene73771:CDS | 25.0% |
| !!! | TCTTTTAACTCTTAACAATG+AGG | + | chr7.3:25540210-25540229 | MS.gene73771:intron | 25.0% |
| !!! | TGCTTTTTCTTGACTTATTT+AGG | + | chr7.3:25540594-25540613 | MS.gene73771:intron | 25.0% |
| AAACACTTTAAGTGCATGTT+TGG | - | chr7.3:25539216-25539235 | None:intergenic | 30.0% | |
| AAGATATGTATAGTAAGGGT+TGG | + | chr7.3:25540132-25540151 | MS.gene73771:intron | 30.0% | |
| AGATATGTATAGTAAGGGTT+GGG | + | chr7.3:25540133-25540152 | MS.gene73771:intron | 30.0% | |
| AGGCAAAATATTTAGACAGT+TGG | + | chr7.3:25541200-25541219 | MS.gene73771:intron | 30.0% | |
| ATAATGAAAGTTCCTTCTTC+TGG | - | chr7.3:25538916-25538935 | None:intergenic | 30.0% | |
| CAATGGAGATACTAATAAAG+TGG | + | chr7.3:25539004-25539023 | MS.gene73771:CDS | 30.0% | |
| CAGACAAGAAAATTCTACTT+TGG | - | chr7.3:25540287-25540306 | None:intergenic | 30.0% | |
| GATTCTGTTTAGATACAGTT+TGG | + | chr7.3:25539807-25539826 | MS.gene73771:intron | 30.0% | |
| TAATGAAAGTTCCTTCTTCT+GGG | - | chr7.3:25538915-25538934 | None:intergenic | 30.0% | |
| TCAAAAACCTTGATTGGAAT+AGG | + | chr7.3:25539354-25539373 | MS.gene73771:CDS | 30.0% | |
| TCAATGTTGCAATTAACCAT+TGG | - | chr7.3:25539422-25539441 | None:intergenic | 30.0% | |
| TCATAATTTCCCAGTATAAG+AGG | - | chr7.3:25540699-25540718 | None:intergenic | 30.0% | |
| TCCAAAGATAAGAGCAATTT+AGG | + | chr7.3:25541091-25541110 | MS.gene73771:intron | 30.0% | |
| TCCTAAATTGCTCTTATCTT+TGG | - | chr7.3:25541095-25541114 | None:intergenic | 30.0% | |
| TCTTCTACAAAAGTTCAGTT+CGG | + | chr7.3:25540938-25540957 | MS.gene73771:CDS | 30.0% | |
| TGACTAAAATGGCATAACTT+TGG | + | chr7.3:25541147-25541166 | MS.gene73771:intron | 30.0% | |
| TGTATGGATAATACAAAGAC+GGG | + | chr7.3:25540560-25540579 | MS.gene73771:intron | 30.0% | |
| TTGATATGTACAGGTTCTAT+TGG | + | chr7.3:25539457-25539476 | MS.gene73771:intron | 30.0% | |
| TTTAACTCTTAACAATGAGG+AGG | + | chr7.3:25540213-25540232 | MS.gene73771:intron | 30.0% | |
| TTTATAAGCTGATATAGCCT+TGG | + | chr7.3:25540831-25540850 | MS.gene73771:intron | 30.0% | |
| ! | CACTTTTACTTTGTAGGAAT+CGG | + | chr7.3:25540882-25540901 | MS.gene73771:intron | 30.0% |
| ! | GCAATTTAGGATTTAGTTTC+TGG | + | chr7.3:25541104-25541123 | MS.gene73771:intron | 30.0% |
| ! | TTTTGTGGATTCTCTATGTT+AGG | + | chr7.3:25539269-25539288 | MS.gene73771:intron | 30.0% |
| !! | ACTTATCCTATTGCTTTTGT+AGG | - | chr7.3:25541231-25541250 | None:intergenic | 30.0% |
| !! | GATGTTTTAAGTGAATAACG+AGG | - | chr7.3:25538939-25538958 | None:intergenic | 30.0% |
| !! | TGAAGCTTTAAAACACCATT+TGG | - | chr7.3:25539906-25539925 | None:intergenic | 30.0% |
| !! | TTTCTTTGGCTTTAAGTTTG+TGG | + | chr7.3:25539845-25539864 | MS.gene73771:intron | 30.0% |
| !!! | GTTTTAAAGCTTCAACCTAA+AGG | + | chr7.3:25539912-25539931 | MS.gene73771:CDS | 30.0% |
| AACCCTGGATATAAATACCA+TGG | + | chr7.3:25539059-25539078 | MS.gene73771:CDS | 35.0% | |
| ATAAAGTGGAATACACTCCT+TGG | + | chr7.3:25539018-25539037 | MS.gene73771:CDS | 35.0% | |
| CTAGGTTTACAGATTATGGT+GGG | - | chr7.3:25540429-25540448 | None:intergenic | 35.0% | |
| GGATAGGTTAAAGATAAGGT+TGG | - | chr7.3:25538894-25538913 | None:intergenic | 35.0% | |
| GGCTATATCAGCTTATAAAG+TGG | - | chr7.3:25540830-25540849 | None:intergenic | 35.0% | |
| GTTAAAGATAAGGTTGGACT+TGG | - | chr7.3:25538888-25538907 | None:intergenic | 35.0% | |
| GTTCCACAGACAAATAACAA+TGG | + | chr7.3:25538987-25539006 | MS.gene73771:CDS | 35.0% | |
| TCGCAACTTCTATGATTGTA+TGG | + | chr7.3:25540544-25540563 | MS.gene73771:intron | 35.0% | |
| TCTAGGTTTACAGATTATGG+TGG | - | chr7.3:25540430-25540449 | None:intergenic | 35.0% | |
| TGCCATGGTATTTATATCCA+GGG | - | chr7.3:25539064-25539083 | None:intergenic | 35.0% | |
| TGTTGCAATTAACCATTGGA+AGG | - | chr7.3:25539418-25539437 | None:intergenic | 35.0% | |
| TTAAAGCTTCAACCTAAAGG+TGG | + | chr7.3:25539915-25539934 | MS.gene73771:CDS | 35.0% | |
| TTAAATCCATAGTTCCAGGA+GGG | - | chr7.3:25540911-25540930 | None:intergenic | 35.0% | |
| TTAGGACTTTAGTGCTCAAT+GGG | + | chr7.3:25541365-25541384 | MS.gene73771:CDS | 35.0% | |
| ! | ATCATTTTCCGTTCGTTGTT+CGG | + | chr7.3:25538965-25538984 | MS.gene73771:CDS | 35.0% |
| ! | GAAAAATGTGATTGGCCATT+TGG | + | chr7.3:25540752-25540771 | MS.gene73771:CDS | 35.0% |
| ! | GCTCATTGCATAGAACTTTT+CGG | + | chr7.3:25541022-25541041 | MS.gene73771:intron | 35.0% |
| ! | TCTGGGATAGGTTAAAGATA+AGG | - | chr7.3:25538898-25538917 | None:intergenic | 35.0% |
| !! | ATTGTCGATGGTGTCATATA+AGG | + | chr7.3:25540165-25540184 | MS.gene73771:intron | 35.0% |
| !! | CATGAATTTTAGTGGGGAAT+CGG | + | chr7.3:25539516-25539535 | MS.gene73771:CDS | 35.0% |
| !! | GCTTTAAAACACCATTTGGA+AGG | - | chr7.3:25539902-25539921 | None:intergenic | 35.0% |
| !! | TCTCCATTGTTATTTGTCTG+TGG | - | chr7.3:25538993-25539012 | None:intergenic | 35.0% |
| !! | TTTGCTATTGAACCTTCCAA+TGG | + | chr7.3:25539403-25539422 | MS.gene73771:intron | 35.0% |
| AACTCTTAACAATGAGGAGG+TGG | + | chr7.3:25540216-25540235 | MS.gene73771:intron | 40.0% | |
| AAGTCCTCTCCTCTTATACT+GGG | + | chr7.3:25540687-25540706 | MS.gene73771:intron | 40.0% | |
| AATCACGAGAACCATCCAAA+TGG | - | chr7.3:25540770-25540789 | None:intergenic | 40.0% | |
| AATGAGGAGGTGGTATTATG+TGG | + | chr7.3:25540226-25540245 | MS.gene73771:intron | 40.0% | |
| ACACACACACACACTGAAAT+TGG | + | chr7.3:25539586-25539605 | MS.gene73771:intron | 40.0% | |
| ACACACACTGAAATTGGTCA+TGG | + | chr7.3:25539592-25539611 | MS.gene73771:intron | 40.0% | |
| ACAGATTATCGAGTCATGCT+AGG | - | chr7.3:25540339-25540358 | None:intergenic | 40.0% | |
| ACGCTTGATAGAAGACTAGA+AGG | - | chr7.3:25540984-25541003 | None:intergenic | 40.0% | |
| ACTCGATAATATGCAGCAAG+AGG | - | chr7.3:25539747-25539766 | None:intergenic | 40.0% | |
| ATGAGGAGGTGGTATTATGT+GGG | + | chr7.3:25540227-25540246 | MS.gene73771:intron | 40.0% | |
| ATTTCCCAGTATAAGAGGAG+AGG | - | chr7.3:25540694-25540713 | None:intergenic | 40.0% | |
| CTAGATAAAAAAGGGCAACC+CGG | + | chr7.3:25540363-25540382 | MS.gene73771:intron | 40.0% | |
| CTTAAATCCATAGTTCCAGG+AGG | - | chr7.3:25540912-25540931 | None:intergenic | 40.0% | |
| CTTTAACCTATCCCAGAAGA+AGG | + | chr7.3:25538901-25538920 | MS.gene73771:CDS | 40.0% | |
| GCTCTTAAATCCATAGTTCC+AGG | - | chr7.3:25540915-25540934 | None:intergenic | 40.0% | |
| GTGCCATGGTATTTATATCC+AGG | - | chr7.3:25539065-25539084 | None:intergenic | 40.0% | |
| GTGGATTCTCTATGTTAGGT+TGG | + | chr7.3:25539273-25539292 | MS.gene73771:intron | 40.0% | |
| GTGTGACCTACAAAAGCAAT+AGG | + | chr7.3:25541222-25541241 | MS.gene73771:intron | 40.0% | |
| GTTAGGACTTTAGTGCTCAA+TGG | + | chr7.3:25541364-25541383 | MS.gene73771:CDS | 40.0% | |
| TAAGTCCTCTCCTCTTATAC+TGG | + | chr7.3:25540686-25540705 | MS.gene73771:intron | 40.0% | |
| TCTACAAAAGTTCAGTTCGG+TGG | + | chr7.3:25540941-25540960 | MS.gene73771:CDS | 40.0% | |
| TGATGCACCTATTCCAATCA+AGG | - | chr7.3:25539364-25539383 | None:intergenic | 40.0% | |
| TTACATTGTGTCTAGTGCCA+TGG | - | chr7.3:25539079-25539098 | None:intergenic | 40.0% | |
| TTCAACCTAAAGGTGGACAT+GGG | + | chr7.3:25539922-25539941 | MS.gene73771:CDS | 40.0% | |
| ! | AATGTGATTGGCCATTTGGA+TGG | + | chr7.3:25540756-25540775 | MS.gene73771:CDS | 40.0% |
| ! | GCGTAGAACTTTTCTGTCAT+TGG | + | chr7.3:25541000-25541019 | MS.gene73771:intron | 40.0% |
| !! | AAAGTTCCTTCTTCTGGGAT+AGG | - | chr7.3:25538910-25538929 | None:intergenic | 40.0% |
| !! | GATGAAACTAGCCTTCCAAA+TGG | + | chr7.3:25539888-25539907 | MS.gene73771:CDS | 40.0% |
| !! | GATTTTCCTCGACTTGCAAT+CGG | + | chr7.3:25540786-25540805 | MS.gene73771:CDS | 40.0% |
| !!! | TGGAGAAGTACCAGTTTTGT+TGG | + | chr7.3:25539477-25539496 | MS.gene73771:CDS | 40.0% |
| AACTAACCGATTGCAAGTCG+AGG | - | chr7.3:25540795-25540814 | None:intergenic | 45.0% | |
| ACCACTAGAATATGGCGCAA+GGG | - | chr7.3:25539771-25539790 | None:intergenic | 45.0% | |
| AGCAAGGAGTTCAAGCTGTT+AGG | + | chr7.3:25541347-25541366 | MS.gene73771:CDS | 45.0% | |
| ATAGTAAGGGTTGGGCTTCT+AGG | + | chr7.3:25540141-25540160 | MS.gene73771:intron | 45.0% | |
| CTTCAACCTAAAGGTGGACA+TGG | + | chr7.3:25539921-25539940 | MS.gene73771:CDS | 45.0% | |
| GATAGTCTTTCTCGGTCAGA+AGG | + | chr7.3:25539309-25539328 | MS.gene73771:CDS | 45.0% | |
| GTTGTAGCAACTACTACCAG+TGG | - | chr7.3:25540263-25540282 | None:intergenic | 45.0% | |
| TACCACTAGAATATGGCGCA+AGG | - | chr7.3:25539772-25539791 | None:intergenic | 45.0% | |
| TAGTAAGGGTTGGGCTTCTA+GGG | + | chr7.3:25540142-25540161 | MS.gene73771:intron | 45.0% | |
| TGAGGTTTCGCCAACAAAAC+TGG | - | chr7.3:25539490-25539509 | None:intergenic | 45.0% | |
| ! | GTTGATGAGTCATTGGAGCA+AGG | + | chr7.3:25541331-25541350 | MS.gene73771:CDS | 45.0% |
| ! | TGTGGGAATAGCTTTACCAC+TGG | + | chr7.3:25540244-25540263 | MS.gene73771:intron | 45.0% |
| !! | ATGGCAGGTTGATGAGTCAT+TGG | + | chr7.3:25541324-25541343 | MS.gene73771:intron | 45.0% |
| !! | GTCGATGGTGTCATATAAGG+CGG | + | chr7.3:25540168-25540187 | MS.gene73771:intron | 45.0% |
| !! | TACACTCCTTGGCTTGTTGT+TGG | + | chr7.3:25539029-25539048 | MS.gene73771:CDS | 45.0% |
| !!! | CGGGTTGCCCTTTTTTATCT+AGG | - | chr7.3:25540365-25540384 | None:intergenic | 45.0% |
| CTGTGGAACCGAACAACGAA+CGG | - | chr7.3:25538976-25538995 | None:intergenic | 50.0% | |
| GTCATATAAGGCGGACACGA+AGG | + | chr7.3:25540177-25540196 | MS.gene73771:intron | 50.0% | |
| GTGGACATGGGCATCACAAT+GGG | + | chr7.3:25539934-25539953 | MS.gene73771:CDS | 50.0% | |
| TGATGCCCATGTCCACCTTT+AGG | - | chr7.3:25539930-25539949 | None:intergenic | 50.0% | |
| ! | CAGTTCGGTGGAAAGAAAGC+AGG | + | chr7.3:25540953-25540972 | MS.gene73771:CDS | 50.0% |
| !! | CCTTGGCTTGTTGTTGGCTT+GGG | + | chr7.3:25539035-25539054 | MS.gene73771:CDS | 50.0% |
| !! | TCCTTGGCTTGTTGTTGGCT+TGG | + | chr7.3:25539034-25539053 | MS.gene73771:CDS | 50.0% |
| ACTAGAGCTCCCGCATATGC+AGG | + | chr7.3:25540389-25540408 | MS.gene73771:intron | 55.0% | |
| CATATGCAGGGTCTGGGAAG+GGG | + | chr7.3:25540402-25540421 | MS.gene73771:intron | 55.0% | |
| CCCAAGCCAACAACAAGCCA+AGG | - | chr7.3:25539038-25539057 | None:intergenic | 55.0% | |
| CGGAAACCCTCCTGGAACTA+TGG | + | chr7.3:25540902-25540921 | MS.gene73771:CDS | 55.0% | |
| CTAGAGCTCCCGCATATGCA+GGG | + | chr7.3:25540390-25540409 | MS.gene73771:intron | 55.0% | |
| CTTCCCAGACCCTGCATATG+CGG | - | chr7.3:25540402-25540421 | None:intergenic | 55.0% | |
| GCATATGCAGGGTCTGGGAA+GGG | + | chr7.3:25540401-25540420 | MS.gene73771:intron | 55.0% | |
| GCCCTTGCGCCATATTCTAG+TGG | + | chr7.3:25539767-25539786 | MS.gene73771:CDS | 55.0% | |
| GGTGGACATGGGCATCACAA+TGG | + | chr7.3:25539933-25539952 | MS.gene73771:CDS | 55.0% | |
| GTAGGAATCGGAAACCCTCC+TGG | + | chr7.3:25540894-25540913 | MS.gene73771:intron | 55.0% | |
| TTCCCAGACCCTGCATATGC+GGG | - | chr7.3:25540401-25540420 | None:intergenic | 55.0% | |
| ! | GGGCTTCTAGGGATTGTCGA+TGG | + | chr7.3:25540153-25540172 | MS.gene73771:intron | 55.0% |
| !! | GTTGTTGGCTTGGGTAACCC+TGG | + | chr7.3:25539044-25539063 | MS.gene73771:CDS | 55.0% |
| CGCATATGCAGGGTCTGGGA+AGG | + | chr7.3:25540400-25540419 | MS.gene73771:intron | 60.0% | |
| CTCCCGCATATGCAGGGTCT+GGG | + | chr7.3:25540396-25540415 | MS.gene73771:intron | 60.0% | |
| ! | ATGCGGGAGCTCTAGTGCAC+CGG | - | chr7.3:25540385-25540404 | None:intergenic | 60.0% |
| GCTCCCGCATATGCAGGGTC+TGG | + | chr7.3:25540395-25540414 | MS.gene73771:intron | 65.0% | |
| ! | TGCGGGAGCTCTAGTGCACC+GGG | - | chr7.3:25540384-25540403 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 25538864 | 25541509 | 25538864 | ID=MS.gene73771 |
| chr7.3 | mRNA | 25538864 | 25541509 | 25538864 | ID=MS.gene73771.t1;Parent=MS.gene73771 |
| chr7.3 | exon | 25538864 | 25539094 | 25538864 | ID=MS.gene73771.t1.exon1;Parent=MS.gene73771.t1 |
| chr7.3 | CDS | 25538864 | 25539094 | 25538864 | ID=cds.MS.gene73771.t1;Parent=MS.gene73771.t1 |
| chr7.3 | exon | 25539291 | 25539375 | 25539291 | ID=MS.gene73771.t1.exon2;Parent=MS.gene73771.t1 |
| chr7.3 | CDS | 25539291 | 25539375 | 25539291 | ID=cds.MS.gene73771.t1;Parent=MS.gene73771.t1 |
| chr7.3 | exon | 25539470 | 25539537 | 25539470 | ID=MS.gene73771.t1.exon3;Parent=MS.gene73771.t1 |
| chr7.3 | CDS | 25539470 | 25539537 | 25539470 | ID=cds.MS.gene73771.t1;Parent=MS.gene73771.t1 |
| chr7.3 | exon | 25539738 | 25539788 | 25539738 | ID=MS.gene73771.t1.exon4;Parent=MS.gene73771.t1 |
| chr7.3 | CDS | 25539738 | 25539788 | 25539738 | ID=cds.MS.gene73771.t1;Parent=MS.gene73771.t1 |
| chr7.3 | exon | 25539882 | 25539955 | 25539882 | ID=MS.gene73771.t1.exon5;Parent=MS.gene73771.t1 |
| chr7.3 | CDS | 25539882 | 25539955 | 25539882 | ID=cds.MS.gene73771.t1;Parent=MS.gene73771.t1 |
| chr7.3 | exon | 25540749 | 25540807 | 25540749 | ID=MS.gene73771.t1.exon6;Parent=MS.gene73771.t1 |
| chr7.3 | CDS | 25540749 | 25540807 | 25540749 | ID=cds.MS.gene73771.t1;Parent=MS.gene73771.t1 |
| chr7.3 | exon | 25540898 | 25540974 | 25540898 | ID=MS.gene73771.t1.exon7;Parent=MS.gene73771.t1 |
| chr7.3 | CDS | 25540898 | 25540974 | 25540898 | ID=cds.MS.gene73771.t1;Parent=MS.gene73771.t1 |
| chr7.3 | exon | 25541331 | 25541399 | 25541331 | ID=MS.gene73771.t1.exon8;Parent=MS.gene73771.t1 |
| chr7.3 | CDS | 25541331 | 25541399 | 25541331 | ID=cds.MS.gene73771.t1;Parent=MS.gene73771.t1 |
| chr7.3 | exon | 25541486 | 25541509 | 25541486 | ID=MS.gene73771.t1.exon9;Parent=MS.gene73771.t1 |
| chr7.3 | CDS | 25541486 | 25541509 | 25541486 | ID=cds.MS.gene73771.t1;Parent=MS.gene73771.t1 |
| Gene Sequence |
| Protein sequence |
