Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74384.t1 | XP_003605789.2 | 96.7 | 367 | 12 | 0 | 1 | 367 | 4 | 370 | 5.10E-208 | 733.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74384.t1 | G7JTL9 | 96.7 | 367 | 12 | 0 | 1 | 367 | 1 | 367 | 3.7e-208 | 733.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050710 | MS.gene74384 | 0.802755 | 4.83E-49 | -1.69E-46 |
| MS.gene051158 | MS.gene74384 | 0.811616 | 6.40E-51 | -1.69E-46 |
| MS.gene051552 | MS.gene74384 | 0.806471 | 8.10E-50 | -1.69E-46 |
| MS.gene051996 | MS.gene74384 | 0.808533 | 2.96E-50 | -1.69E-46 |
| MS.gene052223 | MS.gene74384 | 0.843606 | 1.26E-58 | -1.69E-46 |
| MS.gene054742 | MS.gene74384 | 0.856423 | 3.25E-62 | -1.69E-46 |
| MS.gene056330 | MS.gene74384 | 0.849941 | 2.34E-60 | -1.69E-46 |
| MS.gene056590 | MS.gene74384 | 0.800431 | 1.45E-48 | -1.69E-46 |
| MS.gene056680 | MS.gene74384 | 0.816366 | 5.74E-52 | -1.69E-46 |
| MS.gene056688 | MS.gene74384 | 0.811908 | 5.53E-51 | -1.69E-46 |
| MS.gene056920 | MS.gene74384 | 0.820426 | 6.90E-53 | -1.69E-46 |
| MS.gene059892 | MS.gene74384 | 0.816814 | 4.55E-52 | -1.69E-46 |
| MS.gene060087 | MS.gene74384 | 0.820426 | 6.90E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51556 | MS.gene74384 | PPI |
| MS.gene015971 | MS.gene74384 | PPI |
| MS.gene60267 | MS.gene74384 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74384.t1 | MTR_4g039680 | 96.730 | 367 | 12 | 0 | 1 | 367 | 1 | 367 | 0.0 | 733 |
| MS.gene74384.t1 | MTR_4g039740 | 87.193 | 367 | 47 | 0 | 1 | 367 | 1 | 367 | 0.0 | 677 |
| MS.gene74384.t1 | MTR_4g039720 | 87.052 | 363 | 47 | 0 | 5 | 367 | 9 | 371 | 0.0 | 668 |
| MS.gene74384.t1 | MTR_0045s0110 | 81.199 | 367 | 69 | 0 | 1 | 367 | 1 | 367 | 0.0 | 614 |
| MS.gene74384.t1 | MTR_1g011800 | 54.545 | 330 | 148 | 2 | 34 | 361 | 39 | 368 | 4.80e-131 | 380 |
| MS.gene74384.t1 | MTR_2g103170 | 47.904 | 334 | 168 | 2 | 34 | 361 | 28 | 361 | 2.27e-111 | 330 |
| MS.gene74384.t1 | MTR_2g019600 | 43.161 | 329 | 186 | 1 | 34 | 361 | 35 | 363 | 3.98e-96 | 291 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74384.t1 | AT3G08030 | 67.941 | 340 | 108 | 1 | 29 | 367 | 26 | 365 | 1.60e-175 | 493 |
| MS.gene74384.t1 | AT3G08030 | 68.731 | 323 | 100 | 1 | 46 | 367 | 1 | 323 | 3.64e-169 | 474 |
| MS.gene74384.t1 | AT2G41810 | 58.101 | 358 | 143 | 3 | 11 | 361 | 7 | 364 | 3.06e-150 | 429 |
| MS.gene74384.t1 | AT2G41800 | 60.241 | 332 | 131 | 1 | 34 | 364 | 36 | 367 | 4.68e-150 | 428 |
| MS.gene74384.t1 | AT5G11420 | 55.623 | 329 | 145 | 1 | 34 | 361 | 30 | 358 | 2.89e-135 | 390 |
| MS.gene74384.t1 | AT5G25460 | 52.210 | 362 | 171 | 2 | 1 | 361 | 1 | 361 | 7.59e-135 | 389 |
| MS.gene74384.t1 | AT4G32460 | 53.799 | 329 | 151 | 1 | 34 | 361 | 29 | 357 | 9.89e-132 | 381 |
| MS.gene74384.t1 | AT4G32460 | 53.799 | 329 | 151 | 1 | 34 | 361 | 29 | 357 | 9.89e-132 | 381 |
| MS.gene74384.t1 | AT4G32460 | 54.259 | 317 | 144 | 1 | 46 | 361 | 1 | 317 | 2.38e-129 | 374 |
| MS.gene74384.t1 | AT4G32460 | 54.259 | 317 | 144 | 1 | 46 | 361 | 1 | 317 | 2.38e-129 | 374 |
| MS.gene74384.t1 | AT1G80240 | 50.152 | 329 | 163 | 1 | 34 | 361 | 32 | 360 | 5.56e-114 | 336 |
| MS.gene74384.t1 | AT1G29980 | 42.308 | 338 | 185 | 2 | 34 | 361 | 7 | 344 | 1.87e-96 | 291 |
| MS.gene74384.t1 | AT1G29980 | 42.308 | 338 | 185 | 2 | 34 | 361 | 43 | 380 | 6.83e-96 | 291 |
| MS.gene74384.t1 | AT2G34510 | 42.515 | 334 | 186 | 2 | 34 | 361 | 43 | 376 | 4.87e-94 | 286 |
| MS.gene74384.t1 | AT2G34510 | 43.793 | 290 | 157 | 2 | 78 | 361 | 1 | 290 | 3.31e-84 | 258 |
| MS.gene74384.t1 | AT5G14150 | 27.733 | 375 | 232 | 12 | 11 | 367 | 8 | 361 | 8.34e-31 | 121 |
| MS.gene74384.t1 | AT5G14150 | 27.733 | 375 | 232 | 12 | 11 | 367 | 8 | 361 | 8.34e-31 | 121 |
Find 102 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTGTTGTGTTGAAAAT+AGG | 0.118027 | 4.2:+65098229 | None:intergenic |
| CTTTGAATCAATAAATTTAA+TGG | 0.130784 | 4.2:+65098135 | None:intergenic |
| GCCTATATTTGCAGATAATT+TGG | 0.140639 | 4.2:-65098284 | MS.gene74384:intron |
| CTTAAAGTTTACTTCCAAAA+TGG | 0.175065 | 4.2:-65099753 | MS.gene74384:intron |
| CTTGTTTCCTTTATGAATCT+TGG | 0.194424 | 4.2:+65099708 | None:intergenic |
| TCCTACTTGTGGTCCACTTT+TGG | 0.248583 | 4.2:-65099319 | MS.gene74384:CDS |
| TCTCTTCAAAGTTCCCATTT+TGG | 0.257255 | 4.2:+65099739 | None:intergenic |
| TTCATATTGTAGACTTTGTT+TGG | 0.283032 | 4.2:+65098028 | None:intergenic |
| CATTTGTTGTGTTGAAAATA+GGG | 0.295242 | 4.2:+65098230 | None:intergenic |
| CATACAAGGATTGATGATAT+TGG | 0.295621 | 4.2:-65097824 | MS.gene74384:CDS |
| TCCTTTATGAATCTTGGGTT+TGG | 0.305420 | 4.2:+65099714 | None:intergenic |
| CAATGGTATGCTCTAATATT+AGG | 0.315217 | 4.2:-65099516 | MS.gene74384:CDS |
| CAGGTTTGACCTTGATGGTT+TGG | 0.315262 | 4.2:+65099541 | None:intergenic |
| AAAGTTCCTTTCAAATCTTT+AGG | 0.319577 | 4.2:-65097929 | MS.gene74384:CDS |
| TAGACCATTGATTTCCCATT+TGG | 0.321175 | 4.2:+65099662 | None:intergenic |
| AATAAATTTAATGGCTTTGA+GGG | 0.322824 | 4.2:+65098144 | None:intergenic |
| CTTCTTGCATACCAGGGTTA+TGG | 0.328613 | 4.2:+65099343 | None:intergenic |
| TTGTTTCCTTTATGAATCTT+GGG | 0.332661 | 4.2:+65099709 | None:intergenic |
| CAATGGTGATGTTATTGCTT+GGG | 0.353561 | 4.2:-65099403 | MS.gene74384:CDS |
| AAGAATTTCCAAGTGCCATT+TGG | 0.355884 | 4.2:-65098115 | MS.gene74384:CDS |
| AGGTTTGACCTTGATGGTTT+GGG | 0.356574 | 4.2:+65099542 | None:intergenic |
| TTGACCAGGTTTGACCTTGA+TGG | 0.371778 | 4.2:+65099536 | None:intergenic |
| GACACAAGATCTTGTTGCTT+TGG | 0.386124 | 4.2:+65098193 | None:intergenic |
| GAAAACATTCACTTCCCAAA+TGG | 0.392506 | 4.2:-65099677 | MS.gene74384:CDS |
| GGAGCAGTGGAGCTTGTTGC+AGG | 0.392515 | 4.2:-65098088 | MS.gene74384:CDS |
| TTGTGTCACCACTCCCTGGC+TGG | 0.399232 | 4.2:-65098177 | MS.gene74384:CDS |
| TTAAAGTTTACTTCCAAAAT+GGG | 0.399296 | 4.2:-65099752 | MS.gene74384:intron |
| CAATAAATTTAATGGCTTTG+AGG | 0.405241 | 4.2:+65098143 | None:intergenic |
| CAAACACTTTATAGCCTCAA+TGG | 0.405480 | 4.2:-65099420 | MS.gene74384:CDS |
| TGTTATTGCTTGGGGATTCA+AGG | 0.409886 | 4.2:-65099394 | MS.gene74384:CDS |
| AACATTACCTTCTGGTGACC+TGG | 0.416189 | 4.2:+65100317 | None:intergenic |
| ATCTCAGTGCCTCCACAATC+TGG | 0.419190 | 4.2:-65099456 | MS.gene74384:CDS |
| GCCAAACCCAAGATTCATAA+AGG | 0.423787 | 4.2:-65099715 | MS.gene74384:CDS |
| TACAATATGAAATTCACAAT+TGG | 0.427534 | 4.2:-65098016 | MS.gene74384:CDS |
| GACCTTGATGGTTTGGGAGA+TGG | 0.428706 | 4.2:+65099548 | None:intergenic |
| ATAAAGGAAACAAGACTCAT+TGG | 0.440193 | 4.2:-65099699 | MS.gene74384:CDS |
| AGACCATTGATTTCCCATTT+GGG | 0.443676 | 4.2:+65099663 | None:intergenic |
| TTCCAAGTGCCATTTGGAAA+AGG | 0.444677 | 4.2:-65098109 | MS.gene74384:CDS |
| AAAACATTCACTTCCCAAAT+GGG | 0.451562 | 4.2:-65099676 | MS.gene74384:CDS |
| CATTGTTCATTACCTCTTGT+CGG | 0.452200 | 4.2:+65099261 | None:intergenic |
| ACAAGATCTTGTTGCTTTGG+AGG | 0.453040 | 4.2:+65098196 | None:intergenic |
| AAGAACATGCCTCCAGGTTG+TGG | 0.457371 | 4.2:+65099618 | None:intergenic |
| CCTTTCAAATCTTTAGGAAA+GGG | 0.458801 | 4.2:-65097923 | MS.gene74384:CDS |
| GTAGGATCTTCTTGCATACC+AGG | 0.469875 | 4.2:+65099336 | None:intergenic |
| AGAAGGAGAGTCTAAGCAAC+AGG | 0.470064 | 4.2:+65097761 | None:intergenic |
| TTACCTCTTGTCGGCATCGG+AGG | 0.472016 | 4.2:+65099270 | None:intergenic |
| ATCTCTGGAGGTCCACAACC+TGG | 0.483993 | 4.2:-65099630 | MS.gene74384:CDS |
| TCATTACCTCTTGTCGGCAT+CGG | 0.487489 | 4.2:+65099267 | None:intergenic |
| GCATGAACTCCATGTGACAC+TGG | 0.490852 | 4.2:+65099594 | None:intergenic |
| GGTCTAGTAGAATATATCTC+TGG | 0.497686 | 4.2:-65099645 | MS.gene74384:CDS |
| ATGAAATTCACAATTGGAGA+TGG | 0.502014 | 4.2:-65098010 | MS.gene74384:CDS |
| AATGGACCCTCTTCAAAGCC+AGG | 0.508731 | 4.2:+65098253 | None:intergenic |
| TCCTTTCAAATCTTTAGGAA+AGG | 0.509600 | 4.2:-65097924 | MS.gene74384:CDS |
| AGTGGAGCTTGTTGCAGGTA+GGG | 0.513407 | 4.2:-65098083 | MS.gene74384:CDS |
| AAGAAACCCTGGCTTTGAAG+AGG | 0.516304 | 4.2:-65098260 | MS.gene74384:CDS |
| CAAACCATCAAGGTCAAACC+TGG | 0.519771 | 4.2:-65099540 | MS.gene74384:CDS |
| TCAATAATCCAGCCAGGGAG+TGG | 0.521095 | 4.2:+65098169 | None:intergenic |
| AGGGATTCAATAATCCAGCC+AGG | 0.524844 | 4.2:+65098163 | None:intergenic |
| ATAGCTCTTTCTATCATACA+AGG | 0.527718 | 4.2:-65097838 | MS.gene74384:CDS |
| GATAATTTGGTAAGAAACCC+TGG | 0.527834 | 4.2:-65098271 | MS.gene74384:CDS |
| GGAGTTCATGCAGTTAGACT+TGG | 0.527950 | 4.2:-65099582 | MS.gene74384:CDS |
| TCAAGGTCAAACCTGGTCAA+TGG | 0.528995 | 4.2:-65099533 | MS.gene74384:CDS |
| CCCTTTCCTAAAGATTTGAA+AGG | 0.532370 | 4.2:+65097923 | None:intergenic |
| AATGGTGATGTTATTGCTTG+GGG | 0.532837 | 4.2:-65099402 | MS.gene74384:CDS |
| GCTATAACTTGATCAAGGAC+AGG | 0.534900 | 4.2:+65097788 | None:intergenic |
| CTTCCCAAATGGGAAATCAA+TGG | 0.542169 | 4.2:-65099666 | MS.gene74384:CDS |
| GATCTTGTGTCACCACTCCC+TGG | 0.543570 | 4.2:-65098181 | MS.gene74384:CDS |
| TACCTCTTGTCGGCATCGGA+GGG | 0.555604 | 4.2:+65099271 | None:intergenic |
| GTTGTGTTGAAAATAGGGAA+TGG | 0.558649 | 4.2:+65098235 | None:intergenic |
| CTCCATCTCCCAAACCATCA+AGG | 0.560309 | 4.2:-65099550 | MS.gene74384:CDS |
| ATAGCAACAGCATCCAAAAG+TGG | 0.564034 | 4.2:+65099306 | None:intergenic |
| ACTGGGAAGAACATGCCTCC+AGG | 0.567603 | 4.2:+65099612 | None:intergenic |
| CTCTAATATTAGGAGCGTCT+AGG | 0.567931 | 4.2:-65099506 | MS.gene74384:CDS |
| CATGAACTCCATGTGACACT+GGG | 0.571284 | 4.2:+65099595 | None:intergenic |
| GTGATGCTATAACTTGATCA+AGG | 0.574591 | 4.2:+65097783 | None:intergenic |
| ATTAGAGCATACCATTGACC+AGG | 0.578535 | 4.2:+65099522 | None:intergenic |
| TCAATGGTGATGTTATTGCT+TGG | 0.581184 | 4.2:-65099404 | MS.gene74384:CDS |
| TACCCTCCGATGCCGACAAG+AGG | 0.581876 | 4.2:-65099273 | MS.gene74384:intron |
| ACATTACCTTCTGGTGACCT+GGG | 0.583918 | 4.2:+65100318 | None:intergenic |
| TGTTCTTAGAATTTGTGCAA+TGG | 0.591903 | 4.2:+65098054 | None:intergenic |
| CAGTGGAGCTTGTTGCAGGT+AGG | 0.597409 | 4.2:-65098084 | MS.gene74384:CDS |
| AGGCTATAAAGTGTTTGCAA+AGG | 0.598543 | 4.2:+65099426 | None:intergenic |
| GCCATTTGGAAAAGGAGCAG+TGG | 0.599196 | 4.2:-65098101 | MS.gene74384:CDS |
| CTTGATGGTTTGGGAGATGG+AGG | 0.600334 | 4.2:+65099551 | None:intergenic |
| ATGGACCCTCTTCAAAGCCA+GGG | 0.606005 | 4.2:+65098254 | None:intergenic |
| AGAAACCCTGGCTTTGAAGA+GGG | 0.606940 | 4.2:-65098259 | MS.gene74384:CDS |
| TATTTGCTAATGTTCATCCC+AGG | 0.608084 | 4.2:-65100335 | MS.gene74384:CDS |
| AAGCAATAACATCACCATTG+AGG | 0.621145 | 4.2:+65099406 | None:intergenic |
| ATGTTCTTCCCAGTGTCACA+TGG | 0.627696 | 4.2:-65099603 | MS.gene74384:CDS |
| AAAGTTACATTCCATAACCC+TGG | 0.629174 | 4.2:-65099354 | MS.gene74384:CDS |
| CTATAACTTGATCAAGGACA+GGG | 0.632443 | 4.2:+65097789 | None:intergenic |
| CTAGTAGAATATATCTCTGG+AGG | 0.635119 | 4.2:-65099642 | MS.gene74384:CDS |
| TCCAAAAGTGGACCACAAGT+AGG | 0.642666 | 4.2:+65099318 | None:intergenic |
| TAGGATCTTCTTGCATACCA+GGG | 0.643241 | 4.2:+65099337 | None:intergenic |
| GATGATATTGGATCTATGTG+TGG | 0.643357 | 4.2:-65097812 | MS.gene74384:CDS |
| AAAGGAACATCACCAGATTG+TGG | 0.644013 | 4.2:+65099444 | None:intergenic |
| TGGTTGTCATGGATCAATGA+TGG | 0.645175 | 4.2:-65097981 | MS.gene74384:CDS |
| ATGCAAGAAGATCCTACTTG+TGG | 0.646402 | 4.2:-65099330 | MS.gene74384:CDS |
| GTTCATCCCAGGTCACCAGA+AGG | 0.652959 | 4.2:-65100324 | MS.gene74384:intron |
| GGGATTCAATAATCCAGCCA+GGG | 0.660484 | 4.2:+65098164 | None:intergenic |
| TCTGGAGGTCCACAACCTGG+AGG | 0.689197 | 4.2:-65099627 | MS.gene74384:CDS |
| GGAACATCACCAGATTGTGG+AGG | 0.701281 | 4.2:+65099447 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTCTTTTTTTTTTTG+TGG | + | chr4.2:65099457-65099476 | None:intergenic | 10.0% |
| !! | CTTTGAATCAATAAATTTAA+TGG | + | chr4.2:65100030-65100049 | None:intergenic | 15.0% |
| !! | GTTATGTACAAAAAATATAT+TGG | + | chr4.2:65098349-65098368 | None:intergenic | 15.0% |
| !!! | ATTAAGTGCTTAATTTTTAT+AGG | - | chr4.2:65099575-65099594 | MS.gene74384:CDS | 15.0% |
| !!! | CTTGATAATTTTTTGAAAAT+TGG | + | chr4.2:65099842-65099861 | None:intergenic | 15.0% |
| !! | AATTAACCTATTTACTTTCT+TGG | - | chr4.2:65099788-65099807 | MS.gene74384:intron | 20.0% |
| !! | AATTCAAAATTGCTCTATTT+AGG | - | chr4.2:65099698-65099717 | MS.gene74384:CDS | 20.0% |
| !! | ATTAACCTATTTACTTTCTT+GGG | - | chr4.2:65099789-65099808 | MS.gene74384:intron | 20.0% |
| !! | ATTTCCCTCAAAAAAAATAA+CGG | - | chr4.2:65099528-65099547 | MS.gene74384:CDS | 20.0% |
| !! | CTAAATAATATTTCATGTAG+AGG | + | chr4.2:65099081-65099100 | None:intergenic | 20.0% |
| !! | GTACAAAAAATATATTGGAA+AGG | + | chr4.2:65098344-65098363 | None:intergenic | 20.0% |
| !! | TAAGGGAAAAACAAAAAATA+GGG | + | chr4.2:65098393-65098412 | None:intergenic | 20.0% |
| !! | TACAATATGAAATTCACAAT+TGG | - | chr4.2:65100146-65100165 | MS.gene74384:intron | 20.0% |
| !! | TTAAAGTTTACTTCCAAAAT+GGG | - | chr4.2:65098410-65098429 | MS.gene74384:intron | 20.0% |
| !! | TTAAGGGAAAAACAAAAAAT+AGG | + | chr4.2:65098394-65098413 | None:intergenic | 20.0% |
| !!! | AATAAATTTAATGGCTTTGA+GGG | + | chr4.2:65100021-65100040 | None:intergenic | 20.0% |
| !!! | AATTCCGTTATTTTTTTTGA+GGG | + | chr4.2:65099535-65099554 | None:intergenic | 20.0% |
| !!! | ATTTTGGAAGTAAACTTTAA+GGG | + | chr4.2:65098410-65098429 | None:intergenic | 20.0% |
| !!! | TAAATAGAGCAATTTTGAAT+TGG | + | chr4.2:65099699-65099718 | None:intergenic | 20.0% |
| !!! | TAATTCCGTTATTTTTTTTG+AGG | + | chr4.2:65099536-65099555 | None:intergenic | 20.0% |
| !!! | TTAAGCACTTAATTTTCAAA+AGG | + | chr4.2:65099568-65099587 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTTTTTTTTGTGG+TGG | + | chr4.2:65099454-65099473 | None:intergenic | 20.0% |
| ! | AAAGTTCCTTTCAAATCTTT+AGG | - | chr4.2:65100233-65100252 | MS.gene74384:intron | 25.0% |
| ! | AATACTGTTGAAGATTATGA+TGG | - | chr4.2:65099177-65099196 | MS.gene74384:intron | 25.0% |
| ! | AATGTCTTGAATATTATGCT+TGG | + | chr4.2:65098316-65098335 | None:intergenic | 25.0% |
| ! | ACCAAATTATCTGCAAATAT+AGG | + | chr4.2:65099882-65099901 | None:intergenic | 25.0% |
| ! | AGTGATAAGTACAAAAAAAC+TGG | + | chr4.2:65099235-65099254 | None:intergenic | 25.0% |
| ! | ATACTGTTGAAGATTATGAT+GGG | - | chr4.2:65099178-65099197 | MS.gene74384:intron | 25.0% |
| ! | CTTAAAGTTTACTTCCAAAA+TGG | - | chr4.2:65098409-65098428 | MS.gene74384:intron | 25.0% |
| ! | GATCAGAAATTCAGAATATA+AGG | + | chr4.2:65098371-65098390 | None:intergenic | 25.0% |
| ! | GTAGCTCCTTATATAAAAAT+GGG | + | chr4.2:65099762-65099781 | None:intergenic | 25.0% |
| ! | TAATGTTGAATTGTTGTGAT+TGG | - | chr4.2:65098992-65099011 | MS.gene74384:intron | 25.0% |
| ! | TACCAGTAACAAATATGAAT+TGG | + | chr4.2:65097885-65097904 | None:intergenic | 25.0% |
| ! | TGTAGCTCCTTATATAAAAA+TGG | + | chr4.2:65099763-65099782 | None:intergenic | 25.0% |
| ! | TTCATATTGTAGACTTTGTT+TGG | + | chr4.2:65100137-65100156 | None:intergenic | 25.0% |
| ! | TTGTAAGTTTAGCAAAATCA+TGG | - | chr4.2:65098202-65098221 | MS.gene74384:CDS | 25.0% |
| ! | TTGTTTCCTTTATGAATCTT+GGG | + | chr4.2:65098456-65098475 | None:intergenic | 25.0% |
| !! | CAATAAATTTAATGGCTTTG+AGG | + | chr4.2:65100022-65100041 | None:intergenic | 25.0% |
| !!! | ACATGACCCATTTTTATATA+AGG | - | chr4.2:65099753-65099772 | MS.gene74384:intron | 25.0% |
| !!! | CATTTGTTGTGTTGAAAATA+GGG | + | chr4.2:65099935-65099954 | None:intergenic | 25.0% |
| !!! | CATTTTGGAAGTAAACTTTA+AGG | + | chr4.2:65098411-65098430 | None:intergenic | 25.0% |
| AAAACATTCACTTCCCAAAT+GGG | - | chr4.2:65098486-65098505 | MS.gene74384:intron | 30.0% | |
| ACAATTGGAGATGGAAAAAA+TGG | - | chr4.2:65100161-65100180 | MS.gene74384:intron | 30.0% | |
| ATAAAGGAAACAAGACTCAT+TGG | - | chr4.2:65098463-65098482 | MS.gene74384:intron | 30.0% | |
| ATAAGTACAAAAAAACTGGC+GGG | + | chr4.2:65099231-65099250 | None:intergenic | 30.0% | |
| ATAGCTCTTTCTATCATACA+AGG | - | chr4.2:65100324-65100343 | MS.gene74384:intron | 30.0% | |
| ATGAAATTCACAATTGGAGA+TGG | - | chr4.2:65100152-65100171 | MS.gene74384:intron | 30.0% | |
| ATGAACAATGTCCATTTATC+TGG | - | chr4.2:65098914-65098933 | MS.gene74384:intron | 30.0% | |
| CAATGGTATGCTCTAATATT+AGG | - | chr4.2:65098646-65098665 | MS.gene74384:intron | 30.0% | |
| CAATGTAATCAGATTTGTGA+CGG | + | chr4.2:65098082-65098101 | None:intergenic | 30.0% | |
| CGAATAGAGTGTATTAACAT+TGG | - | chr4.2:65099140-65099159 | MS.gene74384:intron | 30.0% | |
| CTTGAATATTATGCTTGGAT+TGG | + | chr4.2:65098311-65098330 | None:intergenic | 30.0% | |
| CTTGTTTCCTTTATGAATCT+TGG | + | chr4.2:65098457-65098476 | None:intergenic | 30.0% | |
| GATAAGTACAAAAAAACTGG+CGG | + | chr4.2:65099232-65099251 | None:intergenic | 30.0% | |
| GCCTATATTTGCAGATAATT+TGG | - | chr4.2:65099878-65099897 | MS.gene74384:intron | 30.0% | |
| TAAGTTTAGCAAAATCATGG+TGG | - | chr4.2:65098205-65098224 | MS.gene74384:CDS | 30.0% | |
| TGTTCTTAGAATTTGTGCAA+TGG | + | chr4.2:65100111-65100130 | None:intergenic | 30.0% | |
| ! | AGTTTTTGCCAAAATGATAG+TGG | - | chr4.2:65098258-65098277 | MS.gene74384:CDS | 30.0% |
| ! | CATACAAGGATTGATGATAT+TGG | - | chr4.2:65100338-65100357 | MS.gene74384:CDS | 30.0% |
| ! | CCTATTTTCAACACAACAAA+TGG | - | chr4.2:65099933-65099952 | MS.gene74384:intron | 30.0% |
| ! | CCTTTCAAATCTTTAGGAAA+GGG | - | chr4.2:65100239-65100258 | MS.gene74384:intron | 30.0% |
| ! | TCCTTTCAAATCTTTAGGAA+AGG | - | chr4.2:65100238-65100257 | MS.gene74384:intron | 30.0% |
| ! | TGCCAATTCATATTTGTTAC+TGG | - | chr4.2:65097880-65097899 | MS.gene74384:CDS | 30.0% |
| !! | CCATTTGTTGTGTTGAAAAT+AGG | + | chr4.2:65099936-65099955 | None:intergenic | 30.0% |
| !!! | CTTTTTTTTTTTGTGGTGGT+CGG | + | chr4.2:65099450-65099469 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTTGTGGTGGTC+GGG | + | chr4.2:65099449-65099468 | None:intergenic | 30.0% |
| AAAGTTACATTCCATAACCC+TGG | - | chr4.2:65098808-65098827 | MS.gene74384:intron | 35.0% | |
| AAGCAATAACATCACCATTG+AGG | + | chr4.2:65098759-65098778 | None:intergenic | 35.0% | |
| ACACTTCATATCAGACATGT+CGG | - | chr4.2:65098036-65098055 | MS.gene74384:CDS | 35.0% | |
| CAAACACTTTATAGCCTCAA+TGG | - | chr4.2:65098742-65098761 | MS.gene74384:intron | 35.0% | |
| CATTGTTCATTACCTCTTGT+CGG | + | chr4.2:65098904-65098923 | None:intergenic | 35.0% | |
| CCCTTTCCTAAAGATTTGAA+AGG | + | chr4.2:65100242-65100261 | None:intergenic | 35.0% | |
| CTAGTAGAATATATCTCTGG+AGG | - | chr4.2:65098520-65098539 | MS.gene74384:intron | 35.0% | |
| CTATAACTTGATCAAGGACA+GGG | + | chr4.2:65100376-65100395 | None:intergenic | 35.0% | |
| GAAAACATTCACTTCCCAAA+TGG | - | chr4.2:65098485-65098504 | MS.gene74384:intron | 35.0% | |
| GACTTCCCAAGAAAGTAAAT+AGG | + | chr4.2:65099797-65099816 | None:intergenic | 35.0% | |
| GATAATTTGGTAAGAAACCC+TGG | - | chr4.2:65099891-65099910 | MS.gene74384:intron | 35.0% | |
| GATGATATTGGATCTATGTG+TGG | - | chr4.2:65100350-65100369 | MS.gene74384:CDS | 35.0% | |
| GATGGAAAAAATGGTTGTCA+TGG | - | chr4.2:65100170-65100189 | MS.gene74384:intron | 35.0% | |
| GGTCTAGTAGAATATATCTC+TGG | - | chr4.2:65098517-65098536 | MS.gene74384:intron | 35.0% | |
| GTGATGCTATAACTTGATCA+AGG | + | chr4.2:65100382-65100401 | None:intergenic | 35.0% | |
| GTTGTGTTGAAAATAGGGAA+TGG | + | chr4.2:65099930-65099949 | None:intergenic | 35.0% | |
| TAGAGTTGAACATTACCTTC+TGG | + | chr4.2:65097856-65097875 | None:intergenic | 35.0% | |
| TCCTTTATGAATCTTGGGTT+TGG | + | chr4.2:65098451-65098470 | None:intergenic | 35.0% | |
| ! | AAGAATTTCCAAGTGCCATT+TGG | - | chr4.2:65100047-65100066 | MS.gene74384:intron | 35.0% |
| ! | AATGGTGATGTTATTGCTTG+GGG | - | chr4.2:65098760-65098779 | MS.gene74384:intron | 35.0% |
| ! | ACAGTGAACCACTATCATTT+TGG | + | chr4.2:65098269-65098288 | None:intergenic | 35.0% |
| ! | AGGCTATAAAGTGTTTGCAA+AGG | + | chr4.2:65098739-65098758 | None:intergenic | 35.0% |
| ! | CAATGGTGATGTTATTGCTT+GGG | - | chr4.2:65098759-65098778 | MS.gene74384:intron | 35.0% |
| ! | GAATATTATGCTTGGATTGG+AGG | + | chr4.2:65098308-65098327 | None:intergenic | 35.0% |
| ! | TATTTGCTAATGTTCATCCC+AGG | - | chr4.2:65097827-65097846 | MS.gene74384:CDS | 35.0% |
| ! | TCAATGGTGATGTTATTGCT+TGG | - | chr4.2:65098758-65098777 | MS.gene74384:intron | 35.0% |
| ! | TCTCTTCAAAGTTCCCATTT+TGG | + | chr4.2:65098426-65098445 | None:intergenic | 35.0% |
| !! | ACAAGCTGATTTGTTGAGAT+TGG | + | chr4.2:65098969-65098988 | None:intergenic | 35.0% |
| !! | AGACCATTGATTTCCCATTT+GGG | + | chr4.2:65098502-65098521 | None:intergenic | 35.0% |
| !! | TAGACCATTGATTTCCCATT+TGG | + | chr4.2:65098503-65098522 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTTGTGGTGGTCG+GGG | + | chr4.2:65099448-65099467 | None:intergenic | 35.0% |
| AAAGGAACATCACCAGATTG+TGG | + | chr4.2:65098721-65098740 | None:intergenic | 40.0% | |
| ATAGCAACAGCATCCAAAAG+TGG | + | chr4.2:65098859-65098878 | None:intergenic | 40.0% | |
| ATGCAAGAAGATCCTACTTG+TGG | - | chr4.2:65098832-65098851 | MS.gene74384:intron | 40.0% | |
| ATTAGAGCATACCATTGACC+AGG | + | chr4.2:65098643-65098662 | None:intergenic | 40.0% | |
| ATTCTCTGCAGTCATGCAAA+AGG | - | chr4.2:65098937-65098956 | MS.gene74384:intron | 40.0% | |
| CTGCAGAGAATCCAGATAAA+TGG | + | chr4.2:65098928-65098947 | None:intergenic | 40.0% | |
| CTTCCCAAATGGGAAATCAA+TGG | - | chr4.2:65098496-65098515 | MS.gene74384:intron | 40.0% | |
| GCCAAACCCAAGATTCATAA+AGG | - | chr4.2:65098447-65098466 | MS.gene74384:intron | 40.0% | |
| GCTATAACTTGATCAAGGAC+AGG | + | chr4.2:65100377-65100396 | None:intergenic | 40.0% | |
| TAGGATCTTCTTGCATACCA+GGG | + | chr4.2:65098828-65098847 | None:intergenic | 40.0% | |
| TGGTTGTCATGGATCAATGA+TGG | - | chr4.2:65100181-65100200 | MS.gene74384:intron | 40.0% | |
| TGTTATTGCTTGGGGATTCA+AGG | - | chr4.2:65098768-65098787 | MS.gene74384:intron | 40.0% | |
| TTGCTTAACATGTGCCCTAA+GGG | - | chr4.2:65099721-65099740 | MS.gene74384:CDS | 40.0% | |
| ! | AGGTTTGACCTTGATGGTTT+GGG | + | chr4.2:65098623-65098642 | None:intergenic | 40.0% |
| ! | GACACAAGATCTTGTTGCTT+TGG | + | chr4.2:65099972-65099991 | None:intergenic | 40.0% |
| ! | TGAGCTTATCTCAGTTGGTA+AGG | - | chr4.2:65099409-65099428 | MS.gene74384:CDS | 40.0% |
| !! | ACAAGATCTTGTTGCTTTGG+AGG | + | chr4.2:65099969-65099988 | None:intergenic | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | + | chr4.2:65099738-65099757 | None:intergenic | 40.0% |
| !! | CTCTAATATTAGGAGCGTCT+AGG | - | chr4.2:65098656-65098675 | MS.gene74384:intron | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+AGG | + | chr4.2:65099739-65099758 | None:intergenic | 40.0% |
| !! | TTCCAAGTGCCATTTGGAAA+AGG | - | chr4.2:65100053-65100072 | MS.gene74384:intron | 40.0% |
| AACATTACCTTCTGGTGACC+TGG | + | chr4.2:65097848-65097867 | None:intergenic | 45.0% | |
| ACATTACCTTCTGGTGACCT+GGG | + | chr4.2:65097847-65097866 | None:intergenic | 45.0% | |
| AGGGATTCAATAATCCAGCC+AGG | + | chr4.2:65100002-65100021 | None:intergenic | 45.0% | |
| ATGTTCTTCCCAGTGTCACA+TGG | - | chr4.2:65098559-65098578 | MS.gene74384:intron | 45.0% | |
| CAAACCATCAAGGTCAAACC+TGG | - | chr4.2:65098622-65098641 | MS.gene74384:intron | 45.0% | |
| CATGAACTCCATGTGACACT+GGG | + | chr4.2:65098570-65098589 | None:intergenic | 45.0% | |
| CCAACTGAGATAAGCTCATG+AGG | + | chr4.2:65099407-65099426 | None:intergenic | 45.0% | |
| CCTCATGAGCTTATCTCAGT+TGG | - | chr4.2:65099404-65099423 | MS.gene74384:CDS | 45.0% | |
| CTTCTTGCATACCAGGGTTA+TGG | + | chr4.2:65098822-65098841 | None:intergenic | 45.0% | |
| GGAGTTCATGCAGTTAGACT+TGG | - | chr4.2:65098580-65098599 | MS.gene74384:intron | 45.0% | |
| GGGATTCAATAATCCAGCCA+GGG | + | chr4.2:65100001-65100020 | None:intergenic | 45.0% | |
| GTAGGATCTTCTTGCATACC+AGG | + | chr4.2:65098829-65098848 | None:intergenic | 45.0% | |
| GTTGCTTAACATGTGCCCTA+AGG | - | chr4.2:65099720-65099739 | MS.gene74384:CDS | 45.0% | |
| TCAAGGTCAAACCTGGTCAA+TGG | - | chr4.2:65098629-65098648 | MS.gene74384:intron | 45.0% | |
| TCATTACCTCTTGTCGGCAT+CGG | + | chr4.2:65098898-65098917 | None:intergenic | 45.0% | |
| TCCAAAAGTGGACCACAAGT+AGG | + | chr4.2:65098847-65098866 | None:intergenic | 45.0% | |
| TTGACCAGGTTTGACCTTGA+TGG | + | chr4.2:65098629-65098648 | None:intergenic | 45.0% | |
| ! | ATGAAGTGTTCGTGCTACAG+AGG | + | chr4.2:65098025-65098044 | None:intergenic | 45.0% |
| ! | CAGGTTTGACCTTGATGGTT+TGG | + | chr4.2:65098624-65098643 | None:intergenic | 45.0% |
| ! | CTCCTTTTCCAAATGGCACT+TGG | + | chr4.2:65100058-65100077 | None:intergenic | 45.0% |
| ! | TCCACTGCTCCTTTTCCAAA+TGG | + | chr4.2:65100065-65100084 | None:intergenic | 45.0% |
| ! | TCCTACTTGTGGTCCACTTT+TGG | - | chr4.2:65098843-65098862 | MS.gene74384:intron | 45.0% |
| !! | AAGAAACCCTGGCTTTGAAG+AGG | - | chr4.2:65099902-65099921 | MS.gene74384:intron | 45.0% |
| !! | AGAAACCCTGGCTTTGAAGA+GGG | - | chr4.2:65099903-65099922 | MS.gene74384:intron | 45.0% |
| !! | AAAAAAATAATAAATAGTTA+AGG | - | chr4.2:65099356-65099375 | MS.gene74384:CDS | 5.0% |
| !! | AAAAAATAATAAATAGTTAA+GGG | - | chr4.2:65099357-65099376 | MS.gene74384:CDS | 5.0% |
| !!! | TATTTTTTTCAAATTATTAT+TGG | - | chr4.2:65098110-65098129 | MS.gene74384:CDS | 5.0% |
| AAGAACATGCCTCCAGGTTG+TGG | + | chr4.2:65098547-65098566 | None:intergenic | 50.0% | |
| AATGGACCCTCTTCAAAGCC+AGG | + | chr4.2:65099912-65099931 | None:intergenic | 50.0% | |
| AGACATGTCAGTGTCGTGTC+TGG | - | chr4.2:65098136-65098155 | MS.gene74384:CDS | 50.0% | |
| ATCTCAGTGCCTCCACAATC+TGG | - | chr4.2:65098706-65098725 | MS.gene74384:intron | 50.0% | |
| ATGGACCCTCTTCAAAGCCA+GGG | + | chr4.2:65099911-65099930 | None:intergenic | 50.0% | |
| CTCCATCTCCCAAACCATCA+AGG | - | chr4.2:65098612-65098631 | MS.gene74384:intron | 50.0% | |
| GCATGAACTCCATGTGACAC+TGG | + | chr4.2:65098571-65098590 | None:intergenic | 50.0% | |
| GCCATTTGGAAAAGGAGCAG+TGG | - | chr4.2:65100061-65100080 | MS.gene74384:intron | 50.0% | |
| GGAACATCACCAGATTGTGG+AGG | + | chr4.2:65098718-65098737 | None:intergenic | 50.0% | |
| TCAATAATCCAGCCAGGGAG+TGG | + | chr4.2:65099996-65100015 | None:intergenic | 50.0% | |
| ! | CTTGATGGTTTGGGAGATGG+AGG | + | chr4.2:65098614-65098633 | None:intergenic | 50.0% |
| ! | GACCTTGATGGTTTGGGAGA+TGG | + | chr4.2:65098617-65098636 | None:intergenic | 50.0% |
| !! | AGTGGAGCTTGTTGCAGGTA+GGG | - | chr4.2:65100079-65100098 | MS.gene74384:intron | 50.0% |
| ACTGGGAAGAACATGCCTCC+AGG | + | chr4.2:65098553-65098572 | None:intergenic | 55.0% | |
| GATCTTGTGTCACCACTCCC+TGG | - | chr4.2:65099981-65100000 | MS.gene74384:intron | 55.0% | |
| GTTCATCCCAGGTCACCAGA+AGG | - | chr4.2:65097838-65097857 | MS.gene74384:CDS | 55.0% | |
| ! | ATCTCTGGAGGTCCACAACC+TGG | - | chr4.2:65098532-65098551 | MS.gene74384:intron | 55.0% |
| ! | TACCTCTTGTCGGCATCGGA+GGG | + | chr4.2:65098894-65098913 | None:intergenic | 55.0% |
| ! | TTACCTCTTGTCGGCATCGG+AGG | + | chr4.2:65098895-65098914 | None:intergenic | 55.0% |
| !! | CAGTGGAGCTTGTTGCAGGT+AGG | - | chr4.2:65100078-65100097 | MS.gene74384:intron | 55.0% |
| TACCCTCCGATGCCGACAAG+AGG | - | chr4.2:65098889-65098908 | MS.gene74384:intron | 60.0% | |
| TCTGGAGGTCCACAACCTGG+AGG | - | chr4.2:65098535-65098554 | MS.gene74384:intron | 60.0% | |
| TTGTGTCACCACTCCCTGGC+TGG | - | chr4.2:65099985-65100004 | MS.gene74384:intron | 60.0% | |
| !! | GGAGCAGTGGAGCTTGTTGC+AGG | - | chr4.2:65100074-65100093 | MS.gene74384:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 65097772 | 65100412 | 65097772 | ID=MS.gene74384 |
| chr4.2 | mRNA | 65097772 | 65100412 | 65097772 | ID=MS.gene74384.t1;Parent=MS.gene74384 |
| chr4.2 | exon | 65100325 | 65100412 | 65100325 | ID=MS.gene74384.t1.exon1;Parent=MS.gene74384.t1 |
| chr4.2 | CDS | 65100325 | 65100412 | 65100325 | ID=cds.MS.gene74384.t1;Parent=MS.gene74384.t1 |
| chr4.2 | exon | 65099274 | 65099768 | 65099274 | ID=MS.gene74384.t1.exon2;Parent=MS.gene74384.t1 |
| chr4.2 | CDS | 65099274 | 65099768 | 65099274 | ID=cds.MS.gene74384.t1;Parent=MS.gene74384.t1 |
| chr4.2 | exon | 65097772 | 65098292 | 65097772 | ID=MS.gene74384.t1.exon3;Parent=MS.gene74384.t1 |
| chr4.2 | CDS | 65097772 | 65098292 | 65097772 | ID=cds.MS.gene74384.t1;Parent=MS.gene74384.t1 |
| Gene Sequence |
| Protein sequence |
