Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74398.t1 | XP_024641245.1 | 98.1 | 157 | 3 | 0 | 1 | 157 | 83 | 239 | 3.10E-77 | 298.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74398.t1 | A7ZE19 | 60.8 | 51 | 20 | 0 | 3 | 53 | 242 | 292 | 1.9e-11 | 70.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74398.t1 | G7KMG2 | 98.1 | 155 | 3 | 0 | 1 | 155 | 83 | 237 | 8.4e-77 | 296.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene74398 | 0.812705 | 3.71E-51 | -1.69E-46 |
| MS.gene050577 | MS.gene74398 | 0.810535 | 1.10E-50 | -1.69E-46 |
| MS.gene050904 | MS.gene74398 | 0.830509 | 2.82E-55 | -1.69E-46 |
| MS.gene052482 | MS.gene74398 | 0.820095 | 8.22E-53 | -1.69E-46 |
| MS.gene052486 | MS.gene74398 | 0.825385 | 4.83E-54 | -1.69E-46 |
| MS.gene053083 | MS.gene74398 | -0.835099 | 2.04E-56 | -1.69E-46 |
| MS.gene05470 | MS.gene74398 | 0.807725 | 4.39E-50 | -1.69E-46 |
| MS.gene055751 | MS.gene74398 | 0.801109 | 1.05E-48 | -1.69E-46 |
| MS.gene05589 | MS.gene74398 | 0.804937 | 1.70E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene74398 | 0.808972 | 2.38E-50 | -1.69E-46 |
| MS.gene060595 | MS.gene74398 | -0.830568 | 2.73E-55 | -1.69E-46 |
| MS.gene06077 | MS.gene74398 | 0.819648 | 1.04E-52 | -1.69E-46 |
| MS.gene060982 | MS.gene74398 | 0.801534 | 8.61E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74398.t1 | MTR_6g059330 | 98.065 | 155 | 3 | 0 | 1 | 155 | 83 | 237 | 2.32e-107 | 308 |
| MS.gene74398.t1 | MTR_7g112100 | 54.000 | 50 | 23 | 0 | 4 | 53 | 346 | 395 | 4.24e-11 | 61.6 |
| MS.gene74398.t1 | MTR_7g110570 | 54.167 | 48 | 22 | 0 | 4 | 51 | 269 | 316 | 4.36e-11 | 61.6 |
| MS.gene74398.t1 | MTR_7g110570 | 54.167 | 48 | 22 | 0 | 4 | 51 | 275 | 322 | 4.59e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74398.t1 | AT1G33330 | 73.203 | 153 | 40 | 1 | 3 | 155 | 102 | 253 | 5.41e-75 | 226 |
| MS.gene74398.t1 | AT1G33330 | 73.203 | 153 | 40 | 1 | 3 | 155 | 102 | 253 | 5.41e-75 | 226 |
| MS.gene74398.t1 | AT1G33330 | 73.203 | 153 | 40 | 1 | 3 | 155 | 102 | 253 | 5.41e-75 | 226 |
| MS.gene74398.t1 | AT2G47020 | 40.449 | 89 | 39 | 2 | 3 | 91 | 213 | 287 | 1.58e-11 | 62.8 |
| MS.gene74398.t1 | AT2G47020 | 39.560 | 91 | 41 | 2 | 1 | 91 | 276 | 352 | 1.86e-11 | 62.8 |
| MS.gene74398.t1 | AT2G47020 | 52.941 | 51 | 24 | 0 | 1 | 51 | 276 | 326 | 4.22e-11 | 61.6 |
Find 38 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCATACCATTGCAAATTT+TGG | 0.076912 | 6.2:-69142329 | None:intergenic |
| ACAGGGAATGCAAGCTCTTT+TGG | 0.212000 | 6.2:+69142432 | MS.gene74398:intron |
| CGCTCTCTTATAGCTCTTAA+AGG | 0.225668 | 6.2:+69141529 | MS.gene74398:CDS |
| TCAGATATTGGTTCACAAAT+TGG | 0.249489 | 6.2:+69142296 | MS.gene74398:CDS |
| TGGTTCTCAGTGTAATCTTT+TGG | 0.297315 | 6.2:-69144408 | None:intergenic |
| CCTCCGAAGTCATCAATTAG+AGG | 0.388048 | 6.2:+69142272 | MS.gene74398:CDS |
| CGGCTTCCACCGTAGCAGTT+AGG | 0.399678 | 6.2:-69144377 | None:intergenic |
| TCAATTAGAGGGTCAGATAT+TGG | 0.403891 | 6.2:+69142284 | MS.gene74398:CDS |
| CGTCTTAAACATTTACCTAC+TGG | 0.431074 | 6.2:+69140772 | MS.gene74398:CDS |
| ATCTGATGATTCGCTTAGAA+AGG | 0.432213 | 6.2:+69142857 | MS.gene74398:CDS |
| TTATGTTGCAGGTTATCTAC+TGG | 0.440441 | 6.2:+69142813 | MS.gene74398:intron |
| CCTTTGAAGAACCTAGTGAT+AGG | 0.442547 | 6.2:+69144336 | MS.gene74398:intron |
| ACCTACTGGTATCATCGCTC+AGG | 0.465240 | 6.2:+69140786 | MS.gene74398:CDS |
| GGTTATTGTGTCCTATCACT+AGG | 0.479842 | 6.2:-69144347 | None:intergenic |
| TCAGATGCTGCAAAATATCT+CGG | 0.495967 | 6.2:+69142484 | MS.gene74398:CDS |
| ACATTCAAAACCTCTGGTCC+TGG | 0.514850 | 6.2:+69140715 | MS.gene74398:CDS |
| ATGGGTACATTCAAAACCTC+TGG | 0.516467 | 6.2:+69140709 | MS.gene74398:CDS |
| AAATGATCTGCGAGCATCAA+AGG | 0.520593 | 6.2:+69142884 | MS.gene74398:CDS |
| TGCAGTGGCTGTGTTTGTTG+TGG | 0.531085 | 6.2:-69144428 | None:intergenic |
| CAGATGCTGCAAAATATCTC+GGG | 0.537897 | 6.2:+69142485 | MS.gene74398:CDS |
| GTAAGTTGTGGCATGAAGAT+CGG | 0.542317 | 6.2:-69144474 | None:intergenic |
| GGCGTTTAATTGCTGAAGCA+CGG | 0.546007 | 6.2:-69141504 | None:intergenic |
| TTATTACGATGCTGACCACC+AGG | 0.553309 | 6.2:-69140733 | None:intergenic |
| CTCCGAAGTCATCAATTAGA+GGG | 0.591506 | 6.2:+69142273 | MS.gene74398:CDS |
| TATCTACTGGAGCACTGTCT+CGG | 0.597134 | 6.2:+69142826 | MS.gene74398:CDS |
| CTTCAACGTTATAGTTGCAG+TGG | 0.598267 | 6.2:-69144443 | None:intergenic |
| CAATAACCCAAAATTTGCAA+TGG | 0.599001 | 6.2:+69142322 | MS.gene74398:CDS |
| TAATTGATGACTTCGGAGGA+AGG | 0.602100 | 6.2:-69142268 | None:intergenic |
| AGGATCTGAAGAAGCTCTCG+AGG | 0.609913 | 6.2:-69142248 | None:intergenic |
| ACAAACTACACTGTAAGTTG+TGG | 0.619152 | 6.2:-69144486 | None:intergenic |
| GACCCTCTAATTGATGACTT+CGG | 0.625335 | 6.2:-69142275 | None:intergenic |
| TAAGAGCTATAAGAGAGCGT+AGG | 0.648788 | 6.2:-69141525 | None:intergenic |
| GAGGCGGTGAATAAGCATCA+AGG | 0.649822 | 6.2:-69142229 | None:intergenic |
| TTCAAAACCTCTGGTCCTGG+TGG | 0.650837 | 6.2:+69140718 | MS.gene74398:CDS |
| ATGCTGACCACCAGGACCAG+AGG | 0.652907 | 6.2:-69140725 | None:intergenic |
| CCTCTAATTGATGACTTCGG+AGG | 0.662115 | 6.2:-69142272 | None:intergenic |
| ATCTGAAGAAGCTCTCGAGG+CGG | 0.680421 | 6.2:-69142245 | None:intergenic |
| ACCTGAGCGATGATACCAGT+AGG | 0.682842 | 6.2:-69140787 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATATTGTATTAACTT+TGG | + | chr6.2:69143508-69143527 | MS.gene74398:intron | 10.0% |
| !! | ATAAATAAAAAATATAACGT+CGG | + | chr6.2:69141954-69141973 | MS.gene74398:intron | 10.0% |
| !!! | ATTTTTTTTATGATTTTTCT+AGG | + | chr6.2:69141453-69141472 | MS.gene74398:intron | 10.0% |
| !!! | TAATTTGGTTTTTATAATAT+TGG | + | chr6.2:69143356-69143375 | MS.gene74398:intron | 10.0% |
| !!! | TATTTGTGTTTAATTTTTAT+GGG | - | chr6.2:69140884-69140903 | None:intergenic | 10.0% |
| !! | AAGTAATTACTATAAGTAAA+GGG | - | chr6.2:69142129-69142148 | None:intergenic | 15.0% |
| !! | CTTATGTATAAGATATAATA+AGG | + | chr6.2:69141631-69141650 | MS.gene74398:intron | 15.0% |
| !! | GATAGTATATTTATATTCAT+AGG | - | chr6.2:69143900-69143919 | None:intergenic | 15.0% |
| !! | TAAGTAATTACTATAAGTAA+AGG | - | chr6.2:69142130-69142149 | None:intergenic | 15.0% |
| !! | TGAAAAATCATAAGTATATT+TGG | - | chr6.2:69142412-69142431 | None:intergenic | 15.0% |
| !!! | ACTTTTTATTGTAATATCAT+GGG | + | chr6.2:69141411-69141430 | MS.gene74398:intron | 15.0% |
| !!! | ATTTGTGTTTAATTTTTATG+GGG | - | chr6.2:69140883-69140902 | None:intergenic | 15.0% |
| !!! | CTATTTGTGTTTAATTTTTA+TGG | - | chr6.2:69140885-69140904 | None:intergenic | 15.0% |
| !! | AAATCAAAATTGAGTTAACT+TGG | + | chr6.2:69143483-69143502 | MS.gene74398:intron | 20.0% |
| !! | AAGAAATCAAACAACATTAT+TGG | - | chr6.2:69143414-69143433 | None:intergenic | 20.0% |
| !! | AATATATTGATAAAGTCTCT+GGG | + | chr6.2:69143120-69143139 | MS.gene74398:intron | 20.0% |
| !! | ACAAAATTATATTCTTCACA+TGG | + | chr6.2:69144174-69144193 | MS.gene74398:intron | 20.0% |
| !! | AGCATTGTAATTTATGATTA+GGG | + | chr6.2:69142607-69142626 | MS.gene74398:intron | 20.0% |
| !! | ATTGAATTCTTGAGAAATTT+AGG | + | chr6.2:69141892-69141911 | MS.gene74398:intron | 20.0% |
| !! | ATTGTTTATTTATTTGGGTA+TGG | + | chr6.2:69142546-69142565 | MS.gene74398:intron | 20.0% |
| !! | TAAATGTCATAGTAACAAAT+GGG | - | chr6.2:69142587-69142606 | None:intergenic | 20.0% |
| !! | TATAAAAACCAAATTAGTCA+TGG | - | chr6.2:69143352-69143371 | None:intergenic | 20.0% |
| !! | TTAAATGTCATAGTAACAAA+TGG | - | chr6.2:69142588-69142607 | None:intergenic | 20.0% |
| !!! | AAGCATTGTAATTTATGATT+AGG | + | chr6.2:69142606-69142625 | MS.gene74398:intron | 20.0% |
| !!! | ATACTTATGATTTTTCAACA+GGG | + | chr6.2:69142415-69142434 | MS.gene74398:intron | 20.0% |
| !!! | ATCAAACAAGGTAATTATTT+TGG | - | chr6.2:69144250-69144269 | None:intergenic | 20.0% |
| !!! | CACTTTTTATTGTAATATCA+TGG | + | chr6.2:69141410-69141429 | MS.gene74398:intron | 20.0% |
| !!! | GATAAATAAGTAAGTACTTT+TGG | + | chr6.2:69143152-69143171 | MS.gene74398:intron | 20.0% |
| !!! | TAATTTTTTTTATTACTGCC+AGG | + | chr6.2:69140847-69140866 | MS.gene74398:intron | 20.0% |
| !!! | TATACTTATGATTTTTCAAC+AGG | + | chr6.2:69142414-69142433 | MS.gene74398:intron | 20.0% |
| !!! | TGATTTCTTTGATTTATACT+TGG | + | chr6.2:69143425-69143444 | MS.gene74398:intron | 20.0% |
| !!! | TTGGTTTTTATAATATTGGT+GGG | + | chr6.2:69143360-69143379 | MS.gene74398:intron | 20.0% |
| !!! | TTTGGTTTTTATAATATTGG+TGG | + | chr6.2:69143359-69143378 | MS.gene74398:intron | 20.0% |
| ! | AAATGTCATAGTAACAAATG+GGG | - | chr6.2:69142586-69142605 | None:intergenic | 25.0% |
| ! | ATATAAATATACTATCGCTG+TGG | + | chr6.2:69144126-69144145 | MS.gene74398:intron | 25.0% |
| ! | CACATTGCAATTTACAAATT+TGG | + | chr6.2:69141835-69141854 | MS.gene74398:intron | 25.0% |
| ! | GAATATATTGATAAAGTCTC+TGG | + | chr6.2:69143119-69143138 | MS.gene74398:intron | 25.0% |
| ! | TTATAAAATCAGCAAAACAG+AGG | + | chr6.2:69143097-69143116 | MS.gene74398:intron | 25.0% |
| ! | TTCTCAAGAATTCAATCTTT+GGG | - | chr6.2:69141888-69141907 | None:intergenic | 25.0% |
| ! | TTGTTTATGATAAGAGCTAA+CGG | - | chr6.2:69143821-69143840 | None:intergenic | 25.0% |
| ! | TTTCTCAAGAATTCAATCTT+TGG | - | chr6.2:69141889-69141908 | None:intergenic | 25.0% |
| !! | AATTTAGGTTATGGTTCAAA+AGG | + | chr6.2:69141907-69141926 | MS.gene74398:intron | 25.0% |
| !! | AGGTTAATTTTTCTGCATTA+TGG | - | chr6.2:69143704-69143723 | None:intergenic | 25.0% |
| !! | GAAAATGTAGAGACTATTTT+GGG | + | chr6.2:69141333-69141352 | MS.gene74398:intron | 25.0% |
| !! | TGAAAATGTAGAGACTATTT+TGG | + | chr6.2:69141332-69141351 | MS.gene74398:intron | 25.0% |
| !! | TTCTTGAGAAATTTAGGTTA+TGG | + | chr6.2:69141898-69141917 | MS.gene74398:intron | 25.0% |
| !! | TTTTTATGATTTTTCTAGGC+TGG | + | chr6.2:69141457-69141476 | MS.gene74398:intron | 25.0% |
| !!! | ACTGTAATTTTAAGTATGTG+CGG | - | chr6.2:69143629-69143648 | None:intergenic | 25.0% |
| !!! | ATTGCAAATTTTGGGTTATT+GGG | - | chr6.2:69142323-69142342 | None:intergenic | 25.0% |
| !!! | TGTTGCAGTCTTTTAAAAAT+TGG | + | chr6.2:69141861-69141880 | MS.gene74398:intron | 25.0% |
| !!! | TTTGGGTTTTGTTTTTGTAA+GGG | + | chr6.2:69141350-69141369 | MS.gene74398:intron | 25.0% |
| !!! | TTTTGGGTTTTGTTTTTGTA+AGG | + | chr6.2:69141349-69141368 | MS.gene74398:intron | 25.0% |
| AATGTTCAGTGTAATGGTAA+TGG | + | chr6.2:69142637-69142656 | MS.gene74398:intron | 30.0% | |
| ACTCTACAAACATCAACAAT+GGG | + | chr6.2:69143185-69143204 | MS.gene74398:intron | 30.0% | |
| ATTGTAAACACACATGATCA+TGG | - | chr6.2:69143458-69143477 | None:intergenic | 30.0% | |
| CAACCATTATAATGTAGACT+AGG | - | chr6.2:69143599-69143618 | None:intergenic | 30.0% | |
| CAATAACCCAAAATTTGCAA+TGG | + | chr6.2:69142322-69142341 | MS.gene74398:CDS | 30.0% | |
| CACAAAAGAAGTTAAAACAC+AGG | - | chr6.2:69142998-69143017 | None:intergenic | 30.0% | |
| CATGAAAATGTTCAGTGTAA+TGG | + | chr6.2:69142631-69142650 | MS.gene74398:intron | 30.0% | |
| CTTTCTTTCTTGATTTAGTC+AGG | + | chr6.2:69142195-69142214 | MS.gene74398:intron | 30.0% | |
| GAACAATTCGATAACTAGTT+TGG | + | chr6.2:69142780-69142799 | MS.gene74398:intron | 30.0% | |
| GATTAAGCAGTGATGATTTA+TGG | - | chr6.2:69142939-69142958 | None:intergenic | 30.0% | |
| GCACATACTTAAAATTACAG+TGG | + | chr6.2:69143628-69143647 | MS.gene74398:intron | 30.0% | |
| TAGTTCAGTAAAACATCAGA+AGG | - | chr6.2:69142914-69142933 | None:intergenic | 30.0% | |
| TGCATATAATCATAAGCTTG+AGG | + | chr6.2:69143565-69143584 | MS.gene74398:intron | 30.0% | |
| TGTTTATGATAAGAGCTAAC+GGG | - | chr6.2:69143820-69143839 | None:intergenic | 30.0% | |
| TTTACTCACATCATCAAACA+AGG | - | chr6.2:69144262-69144281 | None:intergenic | 30.0% | |
| ! | AAATTAGTCTCATGTAAGTC+GGG | - | chr6.2:69141302-69141321 | None:intergenic | 30.0% |
| ! | AGCATACCATTGCAAATTTT+GGG | - | chr6.2:69142331-69142350 | None:intergenic | 30.0% |
| ! | AGGTTGAATTGTTTTCACAT+AGG | + | chr6.2:69141651-69141670 | MS.gene74398:intron | 30.0% |
| ! | ATCCTTCACAATTTTCTTAC+GGG | - | chr6.2:69141386-69141405 | None:intergenic | 30.0% |
| ! | CAAATTAGTCTCATGTAAGT+CGG | - | chr6.2:69141303-69141322 | None:intergenic | 30.0% |
| ! | CATTACACTGAACATTTTCA+TGG | - | chr6.2:69142633-69142652 | None:intergenic | 30.0% |
| ! | GATCCTTCACAATTTTCTTA+CGG | - | chr6.2:69141387-69141406 | None:intergenic | 30.0% |
| ! | TTCTAAAAACTGAATCGAAG+CGG | + | chr6.2:69143219-69143238 | MS.gene74398:intron | 30.0% |
| !! | AACAAATGGTTTGTTTGGAT+TGG | - | chr6.2:69141789-69141808 | None:intergenic | 30.0% |
| !! | GTTGTTTTCATAAGCTATCT+TGG | + | chr6.2:69141680-69141699 | MS.gene74398:intron | 30.0% |
| !! | TCAGATATTGGTTCACAAAT+TGG | + | chr6.2:69142296-69142315 | MS.gene74398:CDS | 30.0% |
| !! | TCTTGCATTTCGGTTATTTT+AGG | - | chr6.2:69143665-69143684 | None:intergenic | 30.0% |
| !!! | ATTATTTTGGTCTTGGTGTT+TGG | - | chr6.2:69144237-69144256 | None:intergenic | 30.0% |
| !!! | CAAGGTAATTATTTTGGTCT+TGG | - | chr6.2:69144244-69144263 | None:intergenic | 30.0% |
| !!! | CATTGCAAATTTTGGGTTAT+TGG | - | chr6.2:69142324-69142343 | None:intergenic | 30.0% |
| !!! | GATCTTATTTTTGCAGTTGA+TGG | + | chr6.2:69142454-69142473 | MS.gene74398:CDS | 30.0% |
| AAACACCAAAGGGAAACAAA+TGG | - | chr6.2:69141803-69141822 | None:intergenic | 35.0% | |
| AATGCAAGAGCTGAATGATA+AGG | + | chr6.2:69143676-69143695 | MS.gene74398:intron | 35.0% | |
| ACAAACCATTTGTTTCCCTT+TGG | + | chr6.2:69141795-69141814 | MS.gene74398:intron | 35.0% | |
| ATCATAAGCTTGAGGACTAT+TGG | + | chr6.2:69143573-69143592 | MS.gene74398:intron | 35.0% | |
| ATCATTCAGCTCTTGCATTT+CGG | - | chr6.2:69143675-69143694 | None:intergenic | 35.0% | |
| ATCGAAACAGATAGTGAAGA+AGG | - | chr6.2:69141560-69141579 | None:intergenic | 35.0% | |
| ATCTGATGATTCGCTTAGAA+AGG | + | chr6.2:69142857-69142876 | MS.gene74398:CDS | 35.0% | |
| ATTGCAATGTGACACTTCTA+AGG | - | chr6.2:69141826-69141845 | None:intergenic | 35.0% | |
| ATTTGCAATGGTATGCTCAA+TGG | + | chr6.2:69142334-69142353 | MS.gene74398:intron | 35.0% | |
| CACTCTACAAACATCAACAA+TGG | + | chr6.2:69143184-69143203 | MS.gene74398:intron | 35.0% | |
| CATATGTGTCAATGTTGTGT+AGG | + | chr6.2:69141218-69141237 | MS.gene74398:intron | 35.0% | |
| CCTAAAAAACCTAACTGCTA+CGG | + | chr6.2:69144368-69144387 | MS.gene74398:CDS | 35.0% | |
| CGTCTTAAACATTTACCTAC+TGG | + | chr6.2:69140772-69140791 | MS.gene74398:CDS | 35.0% | |
| GAAAATTCATTCCTTGGCTA+AGG | + | chr6.2:69142684-69142703 | MS.gene74398:intron | 35.0% | |
| GGTCATACTCTATATGTGTT+CGG | + | chr6.2:69141988-69142007 | MS.gene74398:intron | 35.0% | |
| GTAATAAGTTCTCCTAATGC+AGG | + | chr6.2:69141745-69141764 | MS.gene74398:intron | 35.0% | |
| TAACGTGAAACCATCTGAAA+AGG | + | chr6.2:69143766-69143785 | MS.gene74398:intron | 35.0% | |
| TATTCTTCACATGGTATCAG+AGG | + | chr6.2:69144183-69144202 | MS.gene74398:intron | 35.0% | |
| TCAATTAGAGGGTCAGATAT+TGG | + | chr6.2:69142284-69142303 | MS.gene74398:CDS | 35.0% | |
| TCAGATGCTGCAAAATATCT+CGG | + | chr6.2:69142484-69142503 | MS.gene74398:CDS | 35.0% | |
| TGAGTTTATCTACCTGCATT+AGG | - | chr6.2:69141760-69141779 | None:intergenic | 35.0% | |
| TGGCCTAGTCTACATTATAA+TGG | + | chr6.2:69143593-69143612 | MS.gene74398:intron | 35.0% | |
| TTATGTTGCAGGTTATCTAC+TGG | + | chr6.2:69142813-69142832 | MS.gene74398:intron | 35.0% | |
| ! | ACTTCTAAGGAAACACCAAA+GGG | - | chr6.2:69141813-69141832 | None:intergenic | 35.0% |
| ! | GAGCATACCATTGCAAATTT+TGG | - | chr6.2:69142332-69142351 | None:intergenic | 35.0% |
| ! | GTAATCTTTTGGATGTGTCA+CGG | - | chr6.2:69144400-69144419 | None:intergenic | 35.0% |
| ! | GTGTTTGCTAATTATGTTGC+AGG | + | chr6.2:69142802-69142821 | MS.gene74398:intron | 35.0% |
| ! | TAGCCAAGGAATGAATTTTC+AGG | - | chr6.2:69142684-69142703 | None:intergenic | 35.0% |
| ! | TATATGTGTCGATGTCTTGT+CGG | + | chr6.2:69141015-69141034 | MS.gene74398:intron | 35.0% |
| ! | TCTTTCAACTCCTTTTCAGA+TGG | - | chr6.2:69143779-69143798 | None:intergenic | 35.0% |
| ! | TGGTTCTCAGTGTAATCTTT+TGG | - | chr6.2:69144411-69144430 | None:intergenic | 35.0% |
| ! | TTTTCAGATGGTTTCACGTT+AGG | - | chr6.2:69143767-69143786 | None:intergenic | 35.0% |
| !! | AGAGCTAACGGGTTTAAATT+TGG | - | chr6.2:69143809-69143828 | None:intergenic | 35.0% |
| !! | AGGGAAACAAATGGTTTGTT+TGG | - | chr6.2:69141794-69141813 | None:intergenic | 35.0% |
| !! | ATAACGTCGGTTCAATCTTT+GGG | + | chr6.2:69141967-69141986 | MS.gene74398:intron | 35.0% |
| !! | GTAATTTTAAGTATGTGCGG+AGG | - | chr6.2:69143626-69143645 | None:intergenic | 35.0% |
| !! | TATAACGTCGGTTCAATCTT+TGG | + | chr6.2:69141966-69141985 | MS.gene74398:intron | 35.0% |
| AAAAAACCTAACTGCTACGG+TGG | + | chr6.2:69144371-69144390 | MS.gene74398:CDS | 40.0% | |
| AAATAACCGAACTGTAGCGA+AGG | - | chr6.2:69143274-69143293 | None:intergenic | 40.0% | |
| AAATGATCTGCGAGCATCAA+AGG | + | chr6.2:69142884-69142903 | MS.gene74398:CDS | 40.0% | |
| AAGTGCTTGTCATGATAAGC+AGG | + | chr6.2:69141608-69141627 | MS.gene74398:intron | 40.0% | |
| ACTGTTCATACGTTGTAAGC+CGG | - | chr6.2:69141123-69141142 | None:intergenic | 40.0% | |
| AGGAATCTATGATGCATCTG+TGG | - | chr6.2:69143747-69143766 | None:intergenic | 40.0% | |
| AGTCAAGTGCTACAAATCTG+AGG | - | chr6.2:69143724-69143743 | None:intergenic | 40.0% | |
| ATGGGTACATTCAAAACCTC+TGG | + | chr6.2:69140709-69140728 | MS.gene74398:CDS | 40.0% | |
| CACATGACATATCTAATCCG+AGG | + | chr6.2:69141062-69141081 | MS.gene74398:intron | 40.0% | |
| CAGATGCTGCAAAATATCTC+GGG | + | chr6.2:69142485-69142504 | MS.gene74398:CDS | 40.0% | |
| CCACAGCGATAGTATATCAT+AGG | - | chr6.2:69144017-69144036 | None:intergenic | 40.0% | |
| CCTATCACTAGGTTCTTCAA+AGG | - | chr6.2:69144339-69144358 | None:intergenic | 40.0% | |
| CCTATGATATACTATCGCTG+TGG | + | chr6.2:69144014-69144033 | MS.gene74398:intron | 40.0% | |
| CGCTCTCTTATAGCTCTTAA+AGG | + | chr6.2:69141529-69141548 | MS.gene74398:CDS | 40.0% | |
| CTCCGAAGTCATCAATTAGA+GGG | + | chr6.2:69142273-69142292 | MS.gene74398:CDS | 40.0% | |
| CTTCAACGTTATAGTTGCAG+TGG | - | chr6.2:69144446-69144465 | None:intergenic | 40.0% | |
| CTTCATATGTCCGGACAAAT+TGG | + | chr6.2:69141095-69141114 | MS.gene74398:intron | 40.0% | |
| GACCCGTAAGAAAATTGTGA+AGG | + | chr6.2:69141381-69141400 | MS.gene74398:intron | 40.0% | |
| GGTTATTGTGTCCTATCACT+AGG | - | chr6.2:69144350-69144369 | None:intergenic | 40.0% | |
| GTAAGTTGTGGCATGAAGAT+CGG | - | chr6.2:69144477-69144496 | None:intergenic | 40.0% | |
| TAGAAGAAACTCCTTAGCCA+AGG | - | chr6.2:69142698-69142717 | None:intergenic | 40.0% | |
| TATGAACAGTGGAAACGACA+CGG | + | chr6.2:69141133-69141152 | MS.gene74398:intron | 40.0% | |
| TATGACCCTAGATGTCTTGT+CGG | + | chr6.2:69143324-69143343 | MS.gene74398:intron | 40.0% | |
| TGTCAATGTTGTGTAGGTGT+CGG | + | chr6.2:69141224-69141243 | MS.gene74398:intron | 40.0% | |
| TTATGGGGACTAAATTGACC+TGG | - | chr6.2:69140868-69140887 | None:intergenic | 40.0% | |
| TTCGCTACAGTTCGGTTATT+TGG | + | chr6.2:69143273-69143292 | MS.gene74398:intron | 40.0% | |
| TTGGACATACCTAATCCAAG+AGG | + | chr6.2:69141254-69141273 | MS.gene74398:intron | 40.0% | |
| ! | CACTTCTAAGGAAACACCAA+AGG | - | chr6.2:69141814-69141833 | None:intergenic | 40.0% |
| ! | CCTTTGAAGAACCTAGTGAT+AGG | + | chr6.2:69144336-69144355 | MS.gene74398:intron | 40.0% |
| ! | GACCCTCTAATTGATGACTT+CGG | - | chr6.2:69142278-69142297 | None:intergenic | 40.0% |
| ! | TAAGAGCTATAAGAGAGCGT+AGG | - | chr6.2:69141528-69141547 | None:intergenic | 40.0% |
| ! | TAATTGATGACTTCGGAGGA+AGG | - | chr6.2:69142271-69142290 | None:intergenic | 40.0% |
| !! | GCTGTTTCTAAGTTGTCTAG+TGG | + | chr6.2:69144302-69144321 | MS.gene74398:intron | 40.0% |
| !! | TAGTCCCTGACATTTTAGTC+CGG | + | chr6.2:69140902-69140921 | MS.gene74398:intron | 40.0% |
| !! | TGTCGGTTCCATGACTAATT+TGG | + | chr6.2:69143341-69143360 | MS.gene74398:intron | 40.0% |
| !! | TTGGTCTTGGTGTTTGGTTT+CGG | - | chr6.2:69144231-69144250 | None:intergenic | 40.0% |
| !!! | CCGTAGCAGTTAGGTTTTTT+AGG | - | chr6.2:69144371-69144390 | None:intergenic | 40.0% |
| ACATGTGTCAGAGTTGTGTC+CGG | - | chr6.2:69142043-69142062 | None:intergenic | 45.0% | |
| ACATTCAAAACCTCTGGTCC+TGG | + | chr6.2:69140715-69140734 | MS.gene74398:CDS | 45.0% | |
| ATGCCCGGACTAAAATGTCA+GGG | - | chr6.2:69140909-69140928 | None:intergenic | 45.0% | |
| ATGGAACCGACAAGACATCT+AGG | - | chr6.2:69143333-69143352 | None:intergenic | 45.0% | |
| ATGGTCTCAAGTGTGTACCA+TGG | + | chr6.2:69142656-69142675 | MS.gene74398:intron | 45.0% | |
| CCGATAACACTGACACAACA+CGG | + | chr6.2:69140944-69140963 | MS.gene74398:intron | 45.0% | |
| CCGTGTTGTGTCAGTGTTAT+CGG | - | chr6.2:69140947-69140966 | None:intergenic | 45.0% | |
| CCTCCGAAGTCATCAATTAG+AGG | + | chr6.2:69142272-69142291 | MS.gene74398:CDS | 45.0% | |
| CGTGTTGTGTCAGTGTTATC+GGG | - | chr6.2:69140946-69140965 | None:intergenic | 45.0% | |
| CTGTTCATACGTTGTAAGCC+GGG | - | chr6.2:69141122-69141141 | None:intergenic | 45.0% | |
| GGCGTTTAATTGCTGAAGCA+CGG | - | chr6.2:69141507-69141526 | None:intergenic | 45.0% | |
| GGCTTACAACGTATGAACAG+TGG | + | chr6.2:69141122-69141141 | MS.gene74398:intron | 45.0% | |
| GGGCCTGAAAATTCATTCCT+TGG | + | chr6.2:69142678-69142697 | MS.gene74398:intron | 45.0% | |
| GGTATCAGAGGCTAGAATCT+AGG | + | chr6.2:69144195-69144214 | MS.gene74398:intron | 45.0% | |
| GTGTCCATGCTTCATATGTC+CGG | + | chr6.2:69141086-69141105 | MS.gene74398:intron | 45.0% | |
| TATGAAGCATGGACACTCCT+CGG | - | chr6.2:69141082-69141101 | None:intergenic | 45.0% | |
| TATGCCCGGACTAAAATGTC+AGG | - | chr6.2:69140910-69140929 | None:intergenic | 45.0% | |
| TGGAACCGACAAGACATCTA+GGG | - | chr6.2:69143332-69143351 | None:intergenic | 45.0% | |
| TGGTCTCAAGTGTGTACCAT+GGG | + | chr6.2:69142657-69142676 | MS.gene74398:intron | 45.0% | |
| TTATTACGATGCTGACCACC+AGG | - | chr6.2:69140736-69140755 | None:intergenic | 45.0% | |
| TTGTCCGGACATATGAAGCA+TGG | - | chr6.2:69141093-69141112 | None:intergenic | 45.0% | |
| ! | ACAGGGAATGCAAGCTCTTT+TGG | + | chr6.2:69142432-69142451 | MS.gene74398:intron | 45.0% |
| ! | ATGATTTTTCTAGGCTGGCG+AGG | + | chr6.2:69141462-69141481 | MS.gene74398:intron | 45.0% |
| ! | CCTCTAATTGATGACTTCGG+AGG | - | chr6.2:69142275-69142294 | None:intergenic | 45.0% |
| ! | CGAAGTACTAAAACAGACGC+CGG | + | chr6.2:69142021-69142040 | MS.gene74398:intron | 45.0% |
| !! | AGTCCCTGACATTTTAGTCC+GGG | + | chr6.2:69140903-69140922 | MS.gene74398:intron | 45.0% |
| !! | GAATGAATTTTCAGGCCCCA+TGG | - | chr6.2:69142676-69142695 | None:intergenic | 45.0% |
| !! | TATCTACTGGAGCACTGTCT+CGG | + | chr6.2:69142826-69142845 | MS.gene74398:CDS | 45.0% |
| !! | ATTTAATTGTTTATTTATTT+GGG | + | chr6.2:69142541-69142560 | MS.gene74398:intron | 5.0% |
| !! | TATTTAATTGTTTATTTATT+TGG | + | chr6.2:69142540-69142559 | MS.gene74398:intron | 5.0% |
| AACCTGCCTTCGCTACAGTT+CGG | + | chr6.2:69143265-69143284 | MS.gene74398:intron | 50.0% | |
| ACCTACTGGTATCATCGCTC+AGG | + | chr6.2:69140786-69140805 | MS.gene74398:CDS | 50.0% | |
| ACCTGAGCGATGATACCAGT+AGG | - | chr6.2:69140790-69140809 | None:intergenic | 50.0% | |
| ACTGAAGCACAGACACCTCT+TGG | - | chr6.2:69141272-69141291 | None:intergenic | 50.0% | |
| AGGATCTGAAGAAGCTCTCG+AGG | - | chr6.2:69142251-69142270 | None:intergenic | 50.0% | |
| ATCTGAAGAAGCTCTCGAGG+CGG | - | chr6.2:69142248-69142267 | None:intergenic | 50.0% | |
| ATGTCCGGACAAATTGGTCC+CGG | + | chr6.2:69141101-69141120 | MS.gene74398:intron | 50.0% | |
| GAGGCGGTGAATAAGCATCA+AGG | - | chr6.2:69142232-69142251 | None:intergenic | 50.0% | |
| GCACAGACACCTCTTGGATT+AGG | - | chr6.2:69141266-69141285 | None:intergenic | 50.0% | |
| GGTCTCAAGTGTGTACCATG+GGG | + | chr6.2:69142658-69142677 | MS.gene74398:intron | 50.0% | |
| GTGTCAGTGCTTCATATGCC+CGG | - | chr6.2:69140924-69140943 | None:intergenic | 50.0% | |
| TAAGCCGGGACCAATTTGTC+CGG | - | chr6.2:69141108-69141127 | None:intergenic | 50.0% | |
| TTCAAAACCTCTGGTCCTGG+TGG | + | chr6.2:69140718-69140737 | MS.gene74398:CDS | 50.0% | |
| ! | TGCAGTGGCTGTGTTTGTTG+TGG | - | chr6.2:69144431-69144450 | None:intergenic | 50.0% |
| ! | TTTTCTAGGCTGGCGAGGAT+CGG | + | chr6.2:69141467-69141486 | MS.gene74398:intron | 50.0% |
| !! | TGTAGGTGTCGGACACTACT+TGG | + | chr6.2:69141235-69141254 | MS.gene74398:intron | 50.0% |
| AACCGAACTGTAGCGAAGGC+AGG | - | chr6.2:69143270-69143289 | None:intergenic | 55.0% | |
| ACACGACACATCTGCAGCGT+CGG | + | chr6.2:69142068-69142087 | MS.gene74398:intron | 55.0% | |
| ATCGAAGCGGACGACTCAAC+TGG | + | chr6.2:69143232-69143251 | MS.gene74398:intron | 55.0% | |
| TGTCCGACACACGTCAGTGT+CGG | - | chr6.2:69141044-69141063 | None:intergenic | 55.0% | |
| TGTCCGACACTGACGTGTGT+CGG | + | chr6.2:69141038-69141057 | MS.gene74398:intron | 55.0% | |
| ATGCTGACCACCAGGACCAG+AGG | - | chr6.2:69140728-69140747 | None:intergenic | 60.0% | |
| CGGCTTCCACCGTAGCAGTT+AGG | - | chr6.2:69144380-69144399 | None:intergenic | 60.0% | |
| !! | CTGCAGCGTCGGTGCTACAT+TGG | + | chr6.2:69142079-69142098 | MS.gene74398:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 69140709 | 69144503 | 69140709 | ID=MS.gene74398 |
| chr6.2 | mRNA | 69140709 | 69144503 | 69140709 | ID=MS.gene74398.t1;Parent=MS.gene74398 |
| chr6.2 | exon | 69140709 | 69140807 | 69140709 | ID=MS.gene74398.t1.exon1;Parent=MS.gene74398.t1 |
| chr6.2 | CDS | 69140709 | 69140807 | 69140709 | ID=cds.MS.gene74398.t1;Parent=MS.gene74398.t1 |
| chr6.2 | exon | 69141475 | 69141550 | 69141475 | ID=MS.gene74398.t1.exon2;Parent=MS.gene74398.t1 |
| chr6.2 | CDS | 69141475 | 69141550 | 69141475 | ID=cds.MS.gene74398.t1;Parent=MS.gene74398.t1 |
| chr6.2 | exon | 69142213 | 69142343 | 69142213 | ID=MS.gene74398.t1.exon3;Parent=MS.gene74398.t1 |
| chr6.2 | CDS | 69142213 | 69142343 | 69142213 | ID=cds.MS.gene74398.t1;Parent=MS.gene74398.t1 |
| chr6.2 | exon | 69142436 | 69142506 | 69142436 | ID=MS.gene74398.t1.exon4;Parent=MS.gene74398.t1 |
| chr6.2 | CDS | 69142436 | 69142506 | 69142436 | ID=cds.MS.gene74398.t1;Parent=MS.gene74398.t1 |
| chr6.2 | exon | 69142824 | 69142905 | 69142824 | ID=MS.gene74398.t1.exon5;Parent=MS.gene74398.t1 |
| chr6.2 | CDS | 69142824 | 69142905 | 69142824 | ID=cds.MS.gene74398.t1;Parent=MS.gene74398.t1 |
| chr6.2 | exon | 69144345 | 69144503 | 69144345 | ID=MS.gene74398.t1.exon6;Parent=MS.gene74398.t1 |
| chr6.2 | CDS | 69144345 | 69144503 | 69144345 | ID=cds.MS.gene74398.t1;Parent=MS.gene74398.t1 |
| Gene Sequence |
| Protein sequence |
