Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76032.t1 | KEH17312.1 | 97.1 | 407 | 11 | 1 | 1 | 406 | 1 | 407 | 2.40E-222 | 781.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76032.t1 | Q93ZR6 | 23.9 | 406 | 293 | 6 | 6 | 402 | 74 | 472 | 8.2e-30 | 132.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76032.t1 | A0A072TIR8 | 97.1 | 407 | 11 | 1 | 1 | 406 | 1 | 407 | 1.7e-222 | 781.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene76032 | 0.812666 | 3.78E-51 | -1.69E-46 |
| MS.gene051199 | MS.gene76032 | 0.816907 | 4.34E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene76032 | 0.828236 | 1.01E-54 | -1.69E-46 |
| MS.gene051720 | MS.gene76032 | 0.832746 | 7.93E-56 | -1.69E-46 |
| MS.gene053144 | MS.gene76032 | 0.805976 | 1.03E-49 | -1.69E-46 |
| MS.gene053174 | MS.gene76032 | 0.808472 | 3.05E-50 | -1.69E-46 |
| MS.gene054550 | MS.gene76032 | 0.807987 | 3.86E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene76032 | 0.808725 | 2.69E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene76032 | 0.812843 | 3.46E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene76032 | 0.817045 | 4.04E-52 | -1.69E-46 |
| MS.gene055537 | MS.gene76032 | 0.818037 | 2.42E-52 | -1.69E-46 |
| MS.gene060519 | MS.gene76032 | 0.803188 | 3.93E-49 | -1.69E-46 |
| MS.gene060884 | MS.gene76032 | 0.808718 | 2.70E-50 | -1.69E-46 |
| MS.gene060886 | MS.gene76032 | 0.806718 | 7.18E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76032.t1 | MTR_0024s0190 | 97.052 | 407 | 11 | 1 | 1 | 406 | 1 | 407 | 0.0 | 814 |
| MS.gene76032.t1 | MTR_0024s0170 | 78.025 | 405 | 83 | 4 | 5 | 405 | 69 | 471 | 0.0 | 638 |
| MS.gene76032.t1 | MTR_7g009960 | 52.393 | 397 | 188 | 1 | 7 | 403 | 70 | 465 | 6.37e-163 | 466 |
| MS.gene76032.t1 | MTR_4g078480 | 53.769 | 398 | 181 | 3 | 2 | 399 | 63 | 457 | 5.23e-157 | 451 |
| MS.gene76032.t1 | MTR_4g078413 | 53.401 | 397 | 183 | 2 | 5 | 401 | 66 | 460 | 1.35e-156 | 450 |
| MS.gene76032.t1 | MTR_4g078440 | 55.000 | 400 | 177 | 3 | 2 | 401 | 40 | 436 | 3.19e-156 | 448 |
| MS.gene76032.t1 | MTR_4g078417 | 55.959 | 386 | 168 | 2 | 5 | 390 | 66 | 449 | 1.59e-154 | 444 |
| MS.gene76032.t1 | MTR_4g078390 | 52.736 | 402 | 185 | 3 | 5 | 405 | 67 | 464 | 2.98e-151 | 436 |
| MS.gene76032.t1 | MTR_4g078390 | 52.764 | 398 | 183 | 3 | 9 | 405 | 2 | 395 | 8.67e-151 | 432 |
| MS.gene76032.t1 | MTR_7g078060 | 51.523 | 394 | 185 | 4 | 6 | 397 | 68 | 457 | 1.25e-146 | 425 |
| MS.gene76032.t1 | MTR_4g478280 | 51.372 | 401 | 189 | 4 | 5 | 401 | 67 | 465 | 2.52e-143 | 416 |
| MS.gene76032.t1 | MTR_7g009960 | 52.991 | 351 | 164 | 1 | 7 | 357 | 70 | 419 | 4.09e-143 | 414 |
| MS.gene76032.t1 | MTR_4g478260 | 51.662 | 391 | 183 | 4 | 5 | 391 | 75 | 463 | 3.62e-141 | 411 |
| MS.gene76032.t1 | MTR_4g478220 | 51.662 | 391 | 183 | 4 | 5 | 391 | 67 | 455 | 1.45e-140 | 409 |
| MS.gene76032.t1 | MTR_7g078060 | 51.791 | 363 | 169 | 4 | 37 | 397 | 7 | 365 | 4.67e-138 | 400 |
| MS.gene76032.t1 | MTR_4g078600 | 48.889 | 405 | 201 | 4 | 5 | 405 | 67 | 469 | 9.95e-134 | 392 |
| MS.gene76032.t1 | MTR_4g078390 | 51.692 | 325 | 148 | 4 | 5 | 328 | 67 | 383 | 1.12e-112 | 335 |
| MS.gene76032.t1 | MTR_4g078390 | 51.713 | 321 | 146 | 4 | 9 | 328 | 2 | 314 | 4.26e-112 | 331 |
| MS.gene76032.t1 | MTR_4g078460 | 55.556 | 189 | 83 | 1 | 5 | 193 | 66 | 253 | 2.16e-64 | 221 |
| MS.gene76032.t1 | MTR_4g078460 | 55.556 | 189 | 83 | 1 | 5 | 193 | 66 | 253 | 9.62e-64 | 221 |
| MS.gene76032.t1 | MTR_1g008160 | 27.251 | 411 | 271 | 9 | 7 | 397 | 23 | 425 | 3.73e-45 | 162 |
| MS.gene76032.t1 | MTR_1g008160 | 27.670 | 412 | 268 | 10 | 7 | 397 | 67 | 469 | 8.00e-45 | 162 |
| MS.gene76032.t1 | MTR_1g008160 | 27.297 | 370 | 242 | 8 | 7 | 357 | 23 | 384 | 6.74e-40 | 147 |
| MS.gene76032.t1 | MTR_1g008160 | 27.763 | 371 | 239 | 9 | 7 | 357 | 67 | 428 | 1.09e-39 | 147 |
| MS.gene76032.t1 | MTR_2055s0010 | 54.444 | 90 | 41 | 0 | 312 | 401 | 1 | 90 | 3.61e-28 | 106 |
| MS.gene76032.t1 | MTR_5g004770 | 31.416 | 226 | 149 | 5 | 173 | 394 | 162 | 385 | 8.03e-26 | 108 |
| MS.gene76032.t1 | MTR_5g004770 | 30.137 | 146 | 85 | 5 | 6 | 142 | 65 | 202 | 3.12e-12 | 68.2 |
| MS.gene76032.t1 | MTR_1g008160 | 29.048 | 210 | 138 | 5 | 7 | 210 | 67 | 271 | 5.67e-23 | 98.6 |
| MS.gene76032.t1 | MTR_1g008160 | 27.413 | 259 | 168 | 6 | 154 | 397 | 62 | 315 | 9.99e-21 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76032.t1 | AT3G49190 | 28.873 | 426 | 272 | 9 | 2 | 403 | 72 | 490 | 3.42e-48 | 172 |
| MS.gene76032.t1 | AT3G49200 | 27.635 | 427 | 275 | 8 | 7 | 406 | 87 | 506 | 3.43e-48 | 171 |
| MS.gene76032.t1 | AT5G12420 | 27.725 | 422 | 272 | 11 | 5 | 401 | 60 | 473 | 1.54e-44 | 161 |
| MS.gene76032.t1 | AT3G49210 | 25.995 | 427 | 274 | 9 | 8 | 400 | 90 | 508 | 2.53e-42 | 155 |
| MS.gene76032.t1 | AT5G53390 | 26.429 | 420 | 271 | 11 | 5 | 400 | 70 | 475 | 3.04e-42 | 155 |
| MS.gene76032.t1 | AT5G16350 | 27.431 | 401 | 270 | 11 | 5 | 395 | 61 | 450 | 3.20e-42 | 154 |
| MS.gene76032.t1 | AT5G22490 | 25.908 | 413 | 274 | 9 | 5 | 395 | 64 | 466 | 1.41e-40 | 150 |
| MS.gene76032.t1 | AT5G12420 | 27.397 | 365 | 234 | 9 | 5 | 345 | 60 | 417 | 3.30e-40 | 149 |
| MS.gene76032.t1 | AT1G72110 | 25.980 | 408 | 275 | 11 | 6 | 402 | 72 | 463 | 6.61e-40 | 148 |
| MS.gene76032.t1 | AT5G16350 | 27.033 | 418 | 270 | 12 | 5 | 395 | 61 | 470 | 1.18e-39 | 148 |
| MS.gene76032.t1 | AT2G38995 | 25.316 | 395 | 276 | 7 | 5 | 388 | 8 | 394 | 7.04e-37 | 139 |
| MS.gene76032.t1 | AT2G38995 | 25.316 | 395 | 276 | 7 | 5 | 388 | 77 | 463 | 2.07e-36 | 139 |
| MS.gene76032.t1 | AT5G53380 | 26.730 | 419 | 264 | 11 | 5 | 395 | 63 | 466 | 4.21e-36 | 138 |
| MS.gene76032.t1 | AT1G72110 | 25.245 | 408 | 269 | 12 | 6 | 402 | 72 | 454 | 2.90e-35 | 135 |
| MS.gene76032.t1 | AT2G38995 | 25.549 | 364 | 252 | 7 | 5 | 357 | 8 | 363 | 2.91e-33 | 129 |
| MS.gene76032.t1 | AT5G37300 | 23.892 | 406 | 293 | 6 | 6 | 402 | 74 | 472 | 6.98e-33 | 129 |
| MS.gene76032.t1 | AT5G37300 | 23.892 | 406 | 293 | 6 | 6 | 402 | 92 | 490 | 7.88e-33 | 129 |
| MS.gene76032.t1 | AT5G16350 | 26.769 | 325 | 204 | 11 | 5 | 303 | 61 | 377 | 4.49e-27 | 112 |
| MS.gene76032.t1 | AT3G49210 | 24.069 | 349 | 224 | 8 | 8 | 323 | 90 | 430 | 7.22e-27 | 111 |
| MS.gene76032.t1 | AT5G22490 | 25.962 | 312 | 199 | 9 | 5 | 294 | 64 | 365 | 2.06e-26 | 109 |
| MS.gene76032.t1 | AT5G37300 | 25.763 | 295 | 204 | 5 | 6 | 292 | 92 | 379 | 3.02e-25 | 106 |
| MS.gene76032.t1 | AT5G37300 | 25.366 | 205 | 150 | 2 | 6 | 210 | 92 | 293 | 1.06e-20 | 92.8 |
| MS.gene76032.t1 | AT2G38995 | 23.301 | 206 | 145 | 3 | 192 | 388 | 72 | 273 | 3.91e-12 | 67.0 |
Find 66 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATCCACTTGAATTTATT+TGG | 0.050307 | 6.3:+13946909 | MS.gene76032:CDS |
| CTTAGGTCTATGTTGGATTT+TGG | 0.123041 | 6.3:+13945587 | MS.gene76032:CDS |
| GATTTGTCACTTGGAAATTC+AGG | 0.273652 | 6.3:-13945251 | None:intergenic |
| TCTTTGGTCACACCTCTTAC+TGG | 0.285700 | 6.3:+13946965 | MS.gene76032:CDS |
| TACTGGCATGCTCTTAAATA+TGG | 0.300882 | 6.3:+13946982 | MS.gene76032:CDS |
| TCATCAGCACGTGACCTAAT+TGG | 0.310434 | 6.3:-13945653 | None:intergenic |
| CTCAAATGTTTCATTCACTA+TGG | 0.318832 | 6.3:+13945700 | MS.gene76032:CDS |
| AGTAACGATCATGAGCTATA+TGG | 0.326285 | 6.3:+13948860 | MS.gene76032:CDS |
| CTTAACAGATTTATAACCTT+TGG | 0.338221 | 6.3:-13946792 | None:intergenic |
| GAACAATAATGGTGCTGCTT+GGG | 0.343031 | 6.3:+13946829 | MS.gene76032:CDS |
| TGGAGATGGTTACTCTCTAA+TGG | 0.346016 | 6.3:+13945430 | MS.gene76032:CDS |
| GTACATGCAAGAATGCAAAT+TGG | 0.367878 | 6.3:-13946856 | None:intergenic |
| AAATCCACTTGAATTTATTT+GGG | 0.373517 | 6.3:+13946910 | MS.gene76032:CDS |
| TTATAAATCTGTTAAGGAAA+TGG | 0.385669 | 6.3:+13946799 | MS.gene76032:CDS |
| AAATCTCTTGATGATTGCTT+TGG | 0.392775 | 6.3:-13945543 | None:intergenic |
| ACAACAATCTCAAATATCAT+TGG | 0.392777 | 6.3:+13948140 | MS.gene76032:CDS |
| GGTCTATACTTCATGGTTGT+TGG | 0.404548 | 6.3:+13948203 | MS.gene76032:CDS |
| AAGATGATCTATCACCAATT+AGG | 0.408538 | 6.3:+13945639 | MS.gene76032:CDS |
| GCCAAAGCCATTTGTTCCAC+TGG | 0.413818 | 6.3:-13948164 | None:intergenic |
| GGATCATTAAGCTCTGGAAT+TGG | 0.416306 | 6.3:-13946878 | None:intergenic |
| GCCAGTGGAACAAATGGCTT+TGG | 0.420543 | 6.3:+13948163 | MS.gene76032:CDS |
| GGAAAGTTAAGAATTGCATT+TGG | 0.420776 | 6.3:+13948882 | MS.gene76032:CDS |
| AGCATAAATGATGTGATTGC+TGG | 0.428607 | 6.3:+13946671 | MS.gene76032:CDS |
| CAAAGGTTATAAATCTGTTA+AGG | 0.429440 | 6.3:+13946793 | MS.gene76032:CDS |
| TACCACAAGATAGACCACTA+TGG | 0.446500 | 6.3:+13945336 | MS.gene76032:CDS |
| GAAGAAAGTTGAAGTTAACT+TGG | 0.449319 | 6.3:+13945211 | MS.gene76032:CDS |
| CATTGGGCCAGTGGAACAAA+TGG | 0.460169 | 6.3:+13948157 | MS.gene76032:CDS |
| GTAACGATCATGAGCTATAT+GGG | 0.461877 | 6.3:+13948861 | MS.gene76032:CDS |
| AACAATAATGGTGCTGCTTG+GGG | 0.468362 | 6.3:+13946830 | MS.gene76032:CDS |
| AGTCAAAGGTCTATACTTCA+TGG | 0.470361 | 6.3:+13948196 | MS.gene76032:CDS |
| CTCAACACTTAGGTCTATGT+TGG | 0.474846 | 6.3:+13945580 | MS.gene76032:CDS |
| AGAACAATAATGGTGCTGCT+TGG | 0.477369 | 6.3:+13946828 | MS.gene76032:CDS |
| GGAGATGGTTACTCTCTAAT+GGG | 0.478243 | 6.3:+13945431 | MS.gene76032:CDS |
| AAGTGTTGAGGATAAAATAG+AGG | 0.480128 | 6.3:-13945567 | None:intergenic |
| CAACAATCTCAAATATCATT+GGG | 0.482094 | 6.3:+13948141 | MS.gene76032:CDS |
| TGACTTGATGGTAATGTGAA+TGG | 0.486385 | 6.3:-13945497 | None:intergenic |
| ATGGTTAGTAAGAACAATAA+TGG | 0.489635 | 6.3:+13946818 | MS.gene76032:CDS |
| AATTTAGGATCATTAAGCTC+TGG | 0.498716 | 6.3:-13946884 | None:intergenic |
| TTTAAGAGCATGCCAGTAAG+AGG | 0.504387 | 6.3:-13946977 | None:intergenic |
| TTCAAACTTCATCATGCACT+TGG | 0.508359 | 6.3:+13945410 | MS.gene76032:CDS |
| CTCAAATATCATTGGGCCAG+TGG | 0.511478 | 6.3:+13948148 | MS.gene76032:CDS |
| ATAATGTGAATTTCCCATAG+TGG | 0.529373 | 6.3:-13945350 | None:intergenic |
| CTTCATCATGCACTTGGAGA+TGG | 0.529838 | 6.3:+13945416 | MS.gene76032:CDS |
| GAGTTGGATGATTTGTCACT+TGG | 0.532091 | 6.3:-13945260 | None:intergenic |
| AAAAGCTAGCTCAACAGCAT+TGG | 0.543886 | 6.3:+13946748 | MS.gene76032:CDS |
| TCCCATAGTGGTCTATCTTG+TGG | 0.549468 | 6.3:-13945338 | None:intergenic |
| ACCACAAGATAGACCACTAT+GGG | 0.562247 | 6.3:+13945337 | MS.gene76032:CDS |
| GCTTCCCAAATAAATTCAAG+TGG | 0.566789 | 6.3:-13946914 | None:intergenic |
| CATGGTTGTTGGTCCACCTG+AGG | 0.568111 | 6.3:+13948214 | MS.gene76032:CDS |
| AAGCTCATAAAGAAATCAGC+AGG | 0.570044 | 6.3:+13946933 | MS.gene76032:CDS |
| ATATTCATCATAGAATGAGT+TGG | 0.572118 | 6.3:-13945276 | None:intergenic |
| AAAGAAGTGAAAACAAGACT+TGG | 0.583599 | 6.3:+13945731 | MS.gene76032:CDS |
| TAGATCATGGACCAATTCGA+TGG | 0.587902 | 6.3:+13945176 | None:intergenic |
| ATGAAGTATAGACCTTTGAC+TGG | 0.589453 | 6.3:-13948194 | None:intergenic |
| ATGATGAAGTTTGAATACTA+AGG | 0.593170 | 6.3:-13945402 | None:intergenic |
| GGTAATGTGAATGGAAGAGA+AGG | 0.595054 | 6.3:-13945488 | None:intergenic |
| TTGGCTAATCATCCAGTCAA+AGG | 0.595631 | 6.3:+13948182 | MS.gene76032:CDS |
| ACAATAATGGTGCTGCTTGG+GGG | 0.601910 | 6.3:+13946831 | MS.gene76032:CDS |
| CAACATAGACCTAAGTGTTG+AGG | 0.605511 | 6.3:-13945579 | None:intergenic |
| AGTGAAAACAAGACTTGGAG+TGG | 0.610857 | 6.3:+13945736 | MS.gene76032:CDS |
| AGTGTTGAGGATAAAATAGA+GGG | 0.611072 | 6.3:-13945566 | None:intergenic |
| TTGAATACAAGAAATACCAA+AGG | 0.636653 | 6.3:+13946776 | MS.gene76032:CDS |
| AAGAAATCATATACCTCAGG+TGG | 0.652514 | 6.3:-13948227 | None:intergenic |
| GTAATGTGAATGGAAGAGAA+GGG | 0.658623 | 6.3:-13945487 | None:intergenic |
| GAAAACACTCAGAGGACCTG+AGG | 0.672682 | 6.3:+13947006 | MS.gene76032:CDS |
| AATATGGTGAAAACACTCAG+AGG | 0.710280 | 6.3:+13946998 | MS.gene76032:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACATAATAAGAATAA+CGG | - | chr6.3:13948491-13948510 | None:intergenic | 10.0% |
| !! | AAAACTTGTATATTAATAAA+TGG | + | chr6.3:13948066-13948085 | MS.gene76032:intron | 10.0% |
| !!! | ATTTAAATTTATTTTTCATG+TGG | - | chr6.3:13946327-13946346 | None:intergenic | 10.0% |
| !!! | TAGACTATATTATTTTTTTA+GGG | - | chr6.3:13947369-13947388 | None:intergenic | 10.0% |
| !!! | TTAGACTATATTATTTTTTT+AGG | - | chr6.3:13947370-13947389 | None:intergenic | 10.0% |
| !!! | TTTAAATTTATTTTTCATGT+GGG | - | chr6.3:13946326-13946345 | None:intergenic | 10.0% |
| !! | AAAAATTGCAAGATATTAAA+AGG | + | chr6.3:13945999-13946018 | MS.gene76032:intron | 15.0% |
| !! | AAAATTGCAAGATATTAAAA+GGG | + | chr6.3:13946000-13946019 | MS.gene76032:intron | 15.0% |
| !! | AAGTTCAATCAATTTATTTA+GGG | + | chr6.3:13947730-13947749 | MS.gene76032:intron | 15.0% |
| !! | ACATACAAAATTTGATATTT+AGG | - | chr6.3:13947493-13947512 | None:intergenic | 15.0% |
| !! | ATATAATTAGGAGTTTAATT+AGG | - | chr6.3:13945900-13945919 | None:intergenic | 15.0% |
| !! | ATTAAACTCCTAATTATATT+AGG | + | chr6.3:13945901-13945920 | MS.gene76032:intron | 15.0% |
| !! | CATCAAAAATTACAAAAAAA+TGG | + | chr6.3:13945873-13945892 | MS.gene76032:intron | 15.0% |
| !! | GGATATAATTTCTAATAAAA+AGG | - | chr6.3:13946305-13946324 | None:intergenic | 15.0% |
| !! | GGTATAAAAAAAGTTTATAT+AGG | + | chr6.3:13947280-13947299 | MS.gene76032:intron | 15.0% |
| !! | TAAGTTCAATCAATTTATTT+AGG | + | chr6.3:13947729-13947748 | MS.gene76032:intron | 15.0% |
| !! | TGACATTTATATAAAAAGAA+TGG | - | chr6.3:13947098-13947117 | None:intergenic | 15.0% |
| !! | TTAAACTCCTAATTATATTA+GGG | + | chr6.3:13945902-13945921 | MS.gene76032:intron | 15.0% |
| !!! | AAAAATAAACCTTTTAGAAA+AGG | - | chr6.3:13948784-13948803 | None:intergenic | 15.0% |
| !!! | AAGGTTTATTTTTTACATTT+TGG | + | chr6.3:13948791-13948810 | MS.gene76032:intron | 15.0% |
| !!! | TGGACTTTTATTTTATTTTT+TGG | + | chr6.3:13945779-13945798 | MS.gene76032:intron | 15.0% |
| !!! | TTTTATACAATGTTGAAATA+TGG | - | chr6.3:13948340-13948359 | None:intergenic | 15.0% |
| !! | AAAATCCACTTGAATTTATT+TGG | + | chr6.3:13946909-13946928 | MS.gene76032:CDS | 20.0% |
| !! | AAACTGAACAACTATTATTA+TGG | - | chr6.3:13946397-13946416 | None:intergenic | 20.0% |
| !! | AAATCCACTTGAATTTATTT+GGG | + | chr6.3:13946910-13946929 | MS.gene76032:CDS | 20.0% |
| !! | AAATTGCAAGATATTAAAAG+GGG | + | chr6.3:13946001-13946020 | MS.gene76032:intron | 20.0% |
| !! | AACTGAACAACTATTATTAT+GGG | - | chr6.3:13946396-13946415 | None:intergenic | 20.0% |
| !! | AATCATACATTAGCTATAAT+AGG | + | chr6.3:13946260-13946279 | MS.gene76032:intron | 20.0% |
| !! | ACACATAATTATAACAATTG+AGG | + | chr6.3:13946203-13946222 | MS.gene76032:intron | 20.0% |
| !! | ATAATAATAGTTGTTCAGTT+TGG | + | chr6.3:13946396-13946415 | MS.gene76032:intron | 20.0% |
| !! | ATCATACATTAGCTATAATA+GGG | + | chr6.3:13946261-13946280 | MS.gene76032:intron | 20.0% |
| !! | CATAAAACCCTAATATAATT+AGG | - | chr6.3:13945912-13945931 | None:intergenic | 20.0% |
| !! | TAAATTAGTTGTACACATAT+AGG | + | chr6.3:13947259-13947278 | MS.gene76032:intron | 20.0% |
| !! | TAATAATAGTTGTTCAGTTT+GGG | + | chr6.3:13946397-13946416 | MS.gene76032:intron | 20.0% |
| !! | TATAGATTGTATTGAATGTA+AGG | + | chr6.3:13947689-13947708 | MS.gene76032:intron | 20.0% |
| !! | TTATAAATCTGTTAAGGAAA+TGG | + | chr6.3:13946799-13946818 | MS.gene76032:CDS | 20.0% |
| !! | TTATATGTCAAAAATAGCAA+TGG | + | chr6.3:13945307-13945326 | MS.gene76032:CDS | 20.0% |
| !!! | ATTAGACTATAAAGTTTTCA+AGG | - | chr6.3:13947235-13947254 | None:intergenic | 20.0% |
| !!! | ATTATATTAGGGTTTTATGA+TGG | + | chr6.3:13945913-13945932 | MS.gene76032:intron | 20.0% |
| !!! | CATTTTGGTATCATATATTT+TGG | + | chr6.3:13948806-13948825 | MS.gene76032:intron | 20.0% |
| !!! | GATTAATTTTCTTTGGAATT+CGG | + | chr6.3:13946693-13946712 | MS.gene76032:CDS | 20.0% |
| !!! | TAGTATTGACTTTTTTAGAT+CGG | + | chr6.3:13948628-13948647 | MS.gene76032:intron | 20.0% |
| !!! | TGTTTGAAAGTATATTTCTT+AGG | + | chr6.3:13947564-13947583 | MS.gene76032:intron | 20.0% |
| !!! | TTATAGCTAATGTATGATTT+TGG | - | chr6.3:13946259-13946278 | None:intergenic | 20.0% |
| !!! | TTGGTATTAAAAATTGACTT+AGG | - | chr6.3:13945527-13945546 | None:intergenic | 20.0% |
| ! | AAGCAACGTAAAAATCATAA+AGG | + | chr6.3:13948412-13948431 | MS.gene76032:intron | 25.0% |
| ! | ACAACAATCTCAAATATCAT+TGG | + | chr6.3:13948140-13948159 | MS.gene76032:CDS | 25.0% |
| ! | AGCTTAGATTATGCATAAAT+AGG | - | chr6.3:13947893-13947912 | None:intergenic | 25.0% |
| ! | ATATTAAAAGGGGAACAATT+TGG | + | chr6.3:13946011-13946030 | MS.gene76032:intron | 25.0% |
| ! | ATATTCATCATAGAATGAGT+TGG | - | chr6.3:13945279-13945298 | None:intergenic | 25.0% |
| ! | ATGATGAAGTTTGAATACTA+AGG | - | chr6.3:13945405-13945424 | None:intergenic | 25.0% |
| ! | ATGGTTAGTAAGAACAATAA+TGG | + | chr6.3:13946818-13946837 | MS.gene76032:CDS | 25.0% |
| ! | CAAAGGTTATAAATCTGTTA+AGG | + | chr6.3:13946793-13946812 | MS.gene76032:CDS | 25.0% |
| ! | CAACAATCTCAAATATCATT+GGG | + | chr6.3:13948141-13948160 | MS.gene76032:CDS | 25.0% |
| ! | CATATCATTGATGAGTTTAT+AGG | + | chr6.3:13946502-13946521 | MS.gene76032:intron | 25.0% |
| ! | CTTAACAGATTTATAACCTT+TGG | - | chr6.3:13946795-13946814 | None:intergenic | 25.0% |
| ! | GTCTAAAAATTTGATTGAGA+GGG | + | chr6.3:13947068-13947087 | MS.gene76032:intron | 25.0% |
| ! | GTTCTTCAAAACTAATTCAT+AGG | + | chr6.3:13948031-13948050 | MS.gene76032:intron | 25.0% |
| ! | TAGAAACGATTGTTAAGAAA+TGG | + | chr6.3:13947656-13947675 | MS.gene76032:intron | 25.0% |
| ! | TATTAAAAGGGGAACAATTT+GGG | + | chr6.3:13946012-13946031 | MS.gene76032:intron | 25.0% |
| ! | TATTAATAAATGGTGTTTCC+AGG | + | chr6.3:13948076-13948095 | MS.gene76032:intron | 25.0% |
| ! | TCATAAAGGACATGTATATA+CGG | + | chr6.3:13948426-13948445 | MS.gene76032:intron | 25.0% |
| ! | TGTCTAAAAATTTGATTGAG+AGG | + | chr6.3:13947067-13947086 | MS.gene76032:intron | 25.0% |
| ! | TTGAATACAAGAAATACCAA+AGG | + | chr6.3:13946776-13946795 | MS.gene76032:CDS | 25.0% |
| !! | ACATTGTTTCCTTTTCTAAA+AGG | + | chr6.3:13948772-13948791 | MS.gene76032:intron | 25.0% |
| !! | ATTGCTGGATTAATTTTCTT+TGG | + | chr6.3:13946686-13946705 | MS.gene76032:CDS | 25.0% |
| !!! | TCAAGTGGATTTTCAAATTT+AGG | - | chr6.3:13946902-13946921 | None:intergenic | 25.0% |
| AAAGAAGTGAAAACAAGACT+TGG | + | chr6.3:13945731-13945750 | MS.gene76032:CDS | 30.0% | |
| AAAGCGTAAACAAACTGTTA+GGG | + | chr6.3:13947618-13947637 | MS.gene76032:intron | 30.0% | |
| AAGATGATCTATCACCAATT+AGG | + | chr6.3:13945639-13945658 | MS.gene76032:CDS | 30.0% | |
| AATTCGATGGAGAGAAAAAA+TGG | + | chr6.3:13945189-13945208 | MS.gene76032:CDS | 30.0% | |
| ACTGCCTCAAATAAAATTTG+AGG | - | chr6.3:13945841-13945860 | None:intergenic | 30.0% | |
| ATAATGTGAATTTCCCATAG+TGG | - | chr6.3:13945353-13945372 | None:intergenic | 30.0% | |
| CTCAAATGTTTCATTCACTA+TGG | + | chr6.3:13945700-13945719 | MS.gene76032:CDS | 30.0% | |
| CTGCCTCAAATAAAATTTGA+GGG | - | chr6.3:13945840-13945859 | None:intergenic | 30.0% | |
| GAAGAAAGTTGAAGTTAACT+TGG | + | chr6.3:13945211-13945230 | MS.gene76032:CDS | 30.0% | |
| GACTAGTGATCATAAAATCA+AGG | - | chr6.3:13947917-13947936 | None:intergenic | 30.0% | |
| GGAAAGTTAAGAATTGCATT+TGG | + | chr6.3:13948882-13948901 | MS.gene76032:CDS | 30.0% | |
| TAGGTGAAATATCTCAAAGT+TGG | + | chr6.3:13945759-13945778 | MS.gene76032:intron | 30.0% | |
| TAGGTTCTTCTTCTATCTTT+AGG | - | chr6.3:13947772-13947791 | None:intergenic | 30.0% | |
| TCAACTAATTATGTTATGCC+AGG | + | chr6.3:13947944-13947963 | MS.gene76032:intron | 30.0% | |
| TTATTATGGGTGTACAAACT+AGG | - | chr6.3:13946383-13946402 | None:intergenic | 30.0% | |
| TTCAGTCTATGAAGTTGTAT+AGG | + | chr6.3:13948536-13948555 | MS.gene76032:intron | 30.0% | |
| ! | AAATCTCTTGATGATTGCTT+TGG | - | chr6.3:13945546-13945565 | None:intergenic | 30.0% |
| ! | AATTTAGGATCATTAAGCTC+TGG | - | chr6.3:13946887-13946906 | None:intergenic | 30.0% |
| ! | AGTGTTGAGGATAAAATAGA+GGG | - | chr6.3:13945569-13945588 | None:intergenic | 30.0% |
| ! | ATACTTTCGAATTGACTTTG+AGG | + | chr6.3:13947594-13947613 | MS.gene76032:intron | 30.0% |
| ! | ATGATAGTGCCATAAATTAG+TGG | - | chr6.3:13946485-13946504 | None:intergenic | 30.0% |
| ! | CTATTTTATCCTCAACACTT+AGG | + | chr6.3:13945570-13945589 | MS.gene76032:CDS | 30.0% |
| ! | TACTTTCGAATTGACTTTGA+GGG | + | chr6.3:13947595-13947614 | MS.gene76032:intron | 30.0% |
| ! | TTTTGACATCGATGCATATT+TGG | - | chr6.3:13948369-13948388 | None:intergenic | 30.0% |
| !! | AAGTGTTGAGGATAAAATAG+AGG | - | chr6.3:13945570-13945589 | None:intergenic | 30.0% |
| !! | ACTTTTGAACCATCTAGTTT+TGG | + | chr6.3:13945813-13945832 | MS.gene76032:intron | 30.0% |
| !! | ATACTATTAGAGAGTACTTG+AGG | + | chr6.3:13947814-13947833 | MS.gene76032:intron | 30.0% |
| !!! | ATTTTTTCTCTCCATCGAAT+TGG | - | chr6.3:13945190-13945209 | None:intergenic | 30.0% |
| !!! | TTTTTTAGATCGGTCAATCT+TGG | + | chr6.3:13948638-13948657 | MS.gene76032:intron | 30.0% |
| AACAATCGTTTCTACCTCTA+AGG | - | chr6.3:13947650-13947669 | None:intergenic | 35.0% | |
| AAGAAATCATATACCTCAGG+TGG | - | chr6.3:13948230-13948249 | None:intergenic | 35.0% | |
| AAGCTCATAAAGAAATCAGC+AGG | + | chr6.3:13946933-13946952 | MS.gene76032:CDS | 35.0% | |
| AATATGGTGAAAACACTCAG+AGG | + | chr6.3:13946998-13947017 | MS.gene76032:CDS | 35.0% | |
| AATCGTAAACACTTGTGCTT+AGG | - | chr6.3:13947791-13947810 | None:intergenic | 35.0% | |
| AGCATAAATGATGTGATTGC+TGG | + | chr6.3:13946671-13946690 | MS.gene76032:CDS | 35.0% | |
| AGTAACGATCATGAGCTATA+TGG | + | chr6.3:13948860-13948879 | MS.gene76032:CDS | 35.0% | |
| AGTCAAAGGTCTATACTTCA+TGG | + | chr6.3:13948196-13948215 | MS.gene76032:CDS | 35.0% | |
| ATGAAGTATAGACCTTTGAC+TGG | - | chr6.3:13948197-13948216 | None:intergenic | 35.0% | |
| CAGCAGGAAGAAAAATTCTT+TGG | + | chr6.3:13946949-13946968 | MS.gene76032:CDS | 35.0% | |
| CATGTTTGTGTAATTACACC+TGG | - | chr6.3:13947965-13947984 | None:intergenic | 35.0% | |
| GAGTTTATAGGTGAAGTTGT+TGG | + | chr6.3:13946514-13946533 | MS.gene76032:intron | 35.0% | |
| GCTTCCCAAATAAATTCAAG+TGG | - | chr6.3:13946917-13946936 | None:intergenic | 35.0% | |
| GTAACGATCATGAGCTATAT+GGG | + | chr6.3:13948861-13948880 | MS.gene76032:CDS | 35.0% | |
| GTAATGTGAATGGAAGAGAA+GGG | - | chr6.3:13945490-13945509 | None:intergenic | 35.0% | |
| GTACATGCAAGAATGCAAAT+TGG | - | chr6.3:13946859-13946878 | None:intergenic | 35.0% | |
| TACTGGCATGCTCTTAAATA+TGG | + | chr6.3:13946982-13947001 | MS.gene76032:CDS | 35.0% | |
| TATCCAACAAAAAATGCAGC+TGG | + | chr6.3:13945377-13945396 | MS.gene76032:CDS | 35.0% | |
| TCGATTGCTAGAGAAGTTTA+GGG | + | chr6.3:13948729-13948748 | MS.gene76032:intron | 35.0% | |
| TGCAAGAAATCATATACCTC+AGG | - | chr6.3:13948233-13948252 | None:intergenic | 35.0% | |
| TTCAAACTTCATCATGCACT+TGG | + | chr6.3:13945410-13945429 | MS.gene76032:CDS | 35.0% | |
| TTCGATTGCTAGAGAAGTTT+AGG | + | chr6.3:13948728-13948747 | MS.gene76032:intron | 35.0% | |
| ! | CCATAAATTAGTGGATGCAA+GGG | - | chr6.3:13946476-13946495 | None:intergenic | 35.0% |
| ! | CTTAGGTCTATGTTGGATTT+TGG | + | chr6.3:13945587-13945606 | MS.gene76032:CDS | 35.0% |
| ! | GAAAGCGTAAACAAACTGTT+AGG | + | chr6.3:13947617-13947636 | MS.gene76032:intron | 35.0% |
| ! | GATTTGTCACTTGGAAATTC+AGG | - | chr6.3:13945254-13945273 | None:intergenic | 35.0% |
| ! | GCAAAAAATCAAGTGTTGTG+TGG | + | chr6.3:13948929-13948948 | MS.gene76032:CDS | 35.0% |
| ! | TGACTTGATGGTAATGTGAA+TGG | - | chr6.3:13945500-13945519 | None:intergenic | 35.0% |
| !! | GGTCCCTCAAATTTTATTTG+AGG | + | chr6.3:13945834-13945853 | MS.gene76032:intron | 35.0% |
| !!! | GACTTAGGTTTTTGACTTGA+TGG | - | chr6.3:13945512-13945531 | None:intergenic | 35.0% |
| !!! | TACGTTGCTTTTTCTCTCTT+CGG | - | chr6.3:13948402-13948421 | None:intergenic | 35.0% |
| AAAACAAGACTTGGAGTGGT+AGG | + | chr6.3:13945740-13945759 | MS.gene76032:intron | 40.0% | |
| AAAAGCTAGCTCAACAGCAT+TGG | + | chr6.3:13946748-13946767 | MS.gene76032:CDS | 40.0% | |
| ACCACAAGATAGACCACTAT+GGG | + | chr6.3:13945337-13945356 | MS.gene76032:CDS | 40.0% | |
| AGTGAAAACAAGACTTGGAG+TGG | + | chr6.3:13945736-13945755 | MS.gene76032:CDS | 40.0% | |
| CAGCAAACAAATGATCGTGA+AGG | - | chr6.3:13948692-13948711 | None:intergenic | 40.0% | |
| CCCTTGCATCCACTAATTTA+TGG | + | chr6.3:13946473-13946492 | MS.gene76032:intron | 40.0% | |
| CTCAACACTTAGGTCTATGT+TGG | + | chr6.3:13945580-13945599 | MS.gene76032:CDS | 40.0% | |
| GGAGATGGTTACTCTCTAAT+GGG | + | chr6.3:13945431-13945450 | MS.gene76032:CDS | 40.0% | |
| GGTAATGTGAATGGAAGAGA+AGG | - | chr6.3:13945491-13945510 | None:intergenic | 40.0% | |
| GGTCTATACTTCATGGTTGT+TGG | + | chr6.3:13948203-13948222 | MS.gene76032:CDS | 40.0% | |
| TAAGTCTAACTACCAACCTC+AGG | - | chr6.3:13947025-13947044 | None:intergenic | 40.0% | |
| TACCACAAGATAGACCACTA+TGG | + | chr6.3:13945336-13945355 | MS.gene76032:CDS | 40.0% | |
| TGGAGATGGTTACTCTCTAA+TGG | + | chr6.3:13945430-13945449 | MS.gene76032:CDS | 40.0% | |
| TGTTAGGGTTTGATCCTTAG+AGG | + | chr6.3:13947633-13947652 | MS.gene76032:intron | 40.0% | |
| TTGGCTAATCATCCAGTCAA+AGG | + | chr6.3:13948182-13948201 | MS.gene76032:CDS | 40.0% | |
| TTTCTCTCTTCGGTTCCTAT+TGG | - | chr6.3:13948392-13948411 | None:intergenic | 40.0% | |
| TTTGAGGGACCAAAACTAGA+TGG | - | chr6.3:13945825-13945844 | None:intergenic | 40.0% | |
| ! | CAACATAGACCTAAGTGTTG+AGG | - | chr6.3:13945582-13945601 | None:intergenic | 40.0% |
| ! | GAGTTGGATGATTTGTCACT+TGG | - | chr6.3:13945263-13945282 | None:intergenic | 40.0% |
| ! | GCATCGATGTCAAAACCAAT+AGG | + | chr6.3:13948374-13948393 | MS.gene76032:intron | 40.0% |
| ! | GCCATAAATTAGTGGATGCA+AGG | - | chr6.3:13946477-13946496 | None:intergenic | 40.0% |
| ! | GGCTATCATTAACTTGATCG+AGG | + | chr6.3:13948659-13948678 | MS.gene76032:intron | 40.0% |
| ! | GGTCTATGTTGGATTTTGGA+TGG | + | chr6.3:13945591-13945610 | MS.gene76032:CDS | 40.0% |
| ! | TTTAAGAGCATGCCAGTAAG+AGG | - | chr6.3:13946980-13946999 | None:intergenic | 40.0% |
| !! | AACAATAATGGTGCTGCTTG+GGG | + | chr6.3:13946830-13946849 | MS.gene76032:CDS | 40.0% |
| !! | AGAACAATAATGGTGCTGCT+TGG | + | chr6.3:13946828-13946847 | MS.gene76032:CDS | 40.0% |
| !! | GAACAATAATGGTGCTGCTT+GGG | + | chr6.3:13946829-13946848 | MS.gene76032:CDS | 40.0% |
| !! | GGATCATTAAGCTCTGGAAT+TGG | - | chr6.3:13946881-13946900 | None:intergenic | 40.0% |
| !! | TTTTCAAGGTGTAGCTCAAG+TGG | - | chr6.3:13947221-13947240 | None:intergenic | 40.0% |
| !!! | GTACCAGCTGCATTTTTTGT+TGG | - | chr6.3:13945383-13945402 | None:intergenic | 40.0% |
| CTCAAATATCATTGGGCCAG+TGG | + | chr6.3:13948148-13948167 | MS.gene76032:CDS | 45.0% | |
| CTTCATCATGCACTTGGAGA+TGG | + | chr6.3:13945416-13945435 | MS.gene76032:CDS | 45.0% | |
| TCATCAGCACGTGACCTAAT+TGG | - | chr6.3:13945656-13945675 | None:intergenic | 45.0% | |
| TCCCATAGTGGTCTATCTTG+TGG | - | chr6.3:13945341-13945360 | None:intergenic | 45.0% | |
| TCTTTGGTCACACCTCTTAC+TGG | + | chr6.3:13946965-13946984 | MS.gene76032:CDS | 45.0% | |
| !! | ACAATAATGGTGCTGCTTGG+GGG | + | chr6.3:13946831-13946850 | MS.gene76032:CDS | 45.0% |
| !! | AAAAAATAAAAAGTTTATAT+AGG | + | chr6.3:13947311-13947330 | MS.gene76032:intron | 5.0% |
| !! | TAAAAAAATAAAGTTTATAT+AGG | + | chr6.3:13947340-13947359 | MS.gene76032:intron | 5.0% |
| !!! | AATCTAATTTTTTTTTTATT+TGG | + | chr6.3:13948007-13948026 | MS.gene76032:intron | 5.0% |
| !!! | ATAAACTTTTTATTTTTTTA+GGG | - | chr6.3:13947309-13947328 | None:intergenic | 5.0% |
| !!! | ATATAAACTTTATTTTTTTA+GGG | - | chr6.3:13947340-13947359 | None:intergenic | 5.0% |
| !!! | TATAAACTTTTTATTTTTTT+AGG | - | chr6.3:13947310-13947329 | None:intergenic | 5.0% |
| !!! | TATATAAACTTTATTTTTTT+AGG | - | chr6.3:13947341-13947360 | None:intergenic | 5.0% |
| CATTGGGCCAGTGGAACAAA+TGG | + | chr6.3:13948157-13948176 | MS.gene76032:CDS | 50.0% | |
| GAAAACACTCAGAGGACCTG+AGG | + | chr6.3:13947006-13947025 | MS.gene76032:CDS | 50.0% | |
| GCCAAAGCCATTTGTTCCAC+TGG | - | chr6.3:13948167-13948186 | None:intergenic | 50.0% | |
| GCCAGTGGAACAAATGGCTT+TGG | + | chr6.3:13948163-13948182 | MS.gene76032:CDS | 50.0% | |
| GTACATATCTAGCTGCAGCC+TGG | - | chr6.3:13948097-13948116 | None:intergenic | 50.0% | |
| ACACTCAGAGGACCTGAGGT+TGG | + | chr6.3:13947010-13947029 | MS.gene76032:intron | 55.0% | |
| CATGGTTGTTGGTCCACCTG+AGG | + | chr6.3:13948214-13948233 | MS.gene76032:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 13945182 | 13949001 | 13945182 | ID=MS.gene76032 |
| chr6.3 | mRNA | 13945182 | 13949001 | 13945182 | ID=MS.gene76032.t1;Parent=MS.gene76032 |
| chr6.3 | exon | 13945182 | 13945757 | 13945182 | ID=MS.gene76032.t1.exon1;Parent=MS.gene76032.t1 |
| chr6.3 | CDS | 13945182 | 13945757 | 13945182 | ID=cds.MS.gene76032.t1;Parent=MS.gene76032.t1 |
| chr6.3 | exon | 13946671 | 13947027 | 13946671 | ID=MS.gene76032.t1.exon2;Parent=MS.gene76032.t1 |
| chr6.3 | CDS | 13946671 | 13947027 | 13946671 | ID=cds.MS.gene76032.t1;Parent=MS.gene76032.t1 |
| chr6.3 | exon | 13948098 | 13948235 | 13948098 | ID=MS.gene76032.t1.exon3;Parent=MS.gene76032.t1 |
| chr6.3 | CDS | 13948098 | 13948235 | 13948098 | ID=cds.MS.gene76032.t1;Parent=MS.gene76032.t1 |
| chr6.3 | exon | 13948852 | 13949001 | 13948852 | ID=MS.gene76032.t1.exon4;Parent=MS.gene76032.t1 |
| chr6.3 | CDS | 13948852 | 13949001 | 13948852 | ID=cds.MS.gene76032.t1;Parent=MS.gene76032.t1 |
| Gene Sequence |
| Protein sequence |
