Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77419.t1 | XP_003613746.1 | 92.4 | 471 | 23 | 2 | 1 | 464 | 1 | 465 | 2.50E-236 | 827.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77419.t1 | Q9SWI1 | 33.9 | 446 | 212 | 18 | 21 | 439 | 31 | 420 | 1.8e-33 | 145.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77419.t1 | G7KDX6 | 92.4 | 471 | 23 | 2 | 1 | 464 | 1 | 465 | 1.8e-236 | 827.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053813 | MS.gene77419 | 0.828065 | 1.11E-54 | -1.69E-46 |
MS.gene054010 | MS.gene77419 | 0.828861 | 7.11E-55 | -1.69E-46 |
MS.gene054011 | MS.gene77419 | 0.817945 | 2.53E-52 | -1.69E-46 |
MS.gene054012 | MS.gene77419 | 0.815494 | 8.98E-52 | -1.69E-46 |
MS.gene054013 | MS.gene77419 | 0.82038 | 7.07E-53 | -1.69E-46 |
MS.gene054183 | MS.gene77419 | 0.808012 | 3.82E-50 | -1.69E-46 |
MS.gene055604 | MS.gene77419 | 0.806656 | 7.40E-50 | -1.69E-46 |
MS.gene055911 | MS.gene77419 | 0.810778 | 9.73E-51 | -1.69E-46 |
MS.gene056902 | MS.gene77419 | 0.801317 | 9.53E-49 | -1.69E-46 |
MS.gene057448 | MS.gene77419 | 0.802947 | 4.41E-49 | -1.69E-46 |
MS.gene057449 | MS.gene77419 | 0.809295 | 2.03E-50 | -1.69E-46 |
MS.gene05858 | MS.gene77419 | 0.800366 | 1.49E-48 | -1.69E-46 |
MS.gene059420 | MS.gene77419 | 0.806975 | 6.34E-50 | -1.69E-46 |
MS.gene059711 | MS.gene77419 | 0.80443 | 2.17E-49 | -1.69E-46 |
MS.gene059807 | MS.gene77419 | 0.810736 | 9.94E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77419.t1 | MTR_5g040340 | 92.144 | 471 | 24 | 2 | 1 | 464 | 1 | 465 | 0.0 | 874 |
MS.gene77419.t1 | MTR_8g055860 | 46.245 | 506 | 171 | 25 | 17 | 464 | 29 | 491 | 1.22e-98 | 305 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77419.t1 | AT2G02950 | 36.341 | 410 | 171 | 20 | 55 | 439 | 76 | 420 | 3.26e-47 | 169 |
MS.gene77419.t1 | AT1G14280 | 33.570 | 423 | 173 | 23 | 52 | 435 | 63 | 416 | 6.46e-42 | 154 |
Find 69 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAGAAGAAGATGGAGAAAT+TGG | 0.158218 | 5.1:-30455659 | MS.gene77419:CDS |
GAATTAAACGATGTTCTTAT+TGG | 0.158853 | 5.1:+30454720 | None:intergenic |
TCACTTGGTGCATAGAAATT+TGG | 0.171246 | 5.1:+30454840 | None:intergenic |
GCCTCAGATGACAAGGTTTA+AGG | 0.196735 | 5.1:-30454550 | MS.gene77419:CDS |
TTTCAAGTACTTGAGTTTAT+TGG | 0.250362 | 5.1:+30455568 | None:intergenic |
TGCACTTTCTATTCTCTTGT+TGG | 0.253513 | 5.1:+30455543 | None:intergenic |
TTGCATCTTTCATCTAATAT+TGG | 0.263596 | 5.1:+30455104 | None:intergenic |
CTTGAGTTTATTGGCATCTA+AGG | 0.270047 | 5.1:+30455577 | None:intergenic |
TTCCTTTCTGTTGCTGATAA+AGG | 0.278838 | 5.1:+30455703 | None:intergenic |
TCCTTTCTGTTGCTGATAAA+GGG | 0.296457 | 5.1:+30455704 | None:intergenic |
AAGAGTCTTCTTGCTACTAT+TGG | 0.302021 | 5.1:-30455398 | MS.gene77419:CDS |
CAGAAAGCTGTTGGTGTTGC+TGG | 0.351018 | 5.1:-30454624 | MS.gene77419:CDS |
AGGTTTAAGGTGGAAAGTTT+TGG | 0.354957 | 5.1:-30454537 | MS.gene77419:CDS |
AGGAAAACATTGGAAGTGTT+TGG | 0.359214 | 5.1:-30455131 | MS.gene77419:CDS |
AGAAAGTGCAAAGTTCAATA+TGG | 0.368278 | 5.1:-30455530 | MS.gene77419:CDS |
ACAACATCACATGTTGCTTC+TGG | 0.368292 | 5.1:-30454873 | MS.gene77419:CDS |
CATTCAATGCTTGCTTCACT+TGG | 0.371898 | 5.1:+30454825 | None:intergenic |
AGAAATGAACAACATGGTTA+TGG | 0.378020 | 5.1:-30454510 | MS.gene77419:CDS |
CTTGATTCTGAGCCAACACT+TGG | 0.447581 | 5.1:+30455503 | None:intergenic |
CGGCGTCATGGAAAATTGTT+GGG | 0.449202 | 5.1:-30454657 | MS.gene77419:CDS |
CTTCTTCTTTCTTTACTCCA+AGG | 0.457657 | 5.1:+30455672 | None:intergenic |
GCGGCGTCATGGAAAATTGT+TGG | 0.460904 | 5.1:-30454658 | MS.gene77419:CDS |
AGTCAATAAGCTTTGATATG+AGG | 0.461128 | 5.1:-30455082 | MS.gene77419:CDS |
TTCAACAAAAGTGCAGTTCA+AGG | 0.462298 | 5.1:-30455311 | MS.gene77419:CDS |
AAGGTTCAGTAGTAACTATA+AGG | 0.462753 | 5.1:-30454746 | MS.gene77419:CDS |
TTTGAGATTGAAAGCTTCAC+TGG | 0.464240 | 5.1:-30454927 | MS.gene77419:CDS |
GAAGACTCTTTCTATGAACT+TGG | 0.474532 | 5.1:+30455411 | None:intergenic |
TTTGTAGCAGCTTCCCAAGA+TGG | 0.486138 | 5.1:+30455050 | None:intergenic |
GCATCTAAGGTAGCAAGTCT+TGG | 0.492321 | 5.1:+30455590 | None:intergenic |
CTTGAACAACAAGGAAGTAA+AGG | 0.492569 | 5.1:-30455750 | MS.gene77419:CDS |
TTCTGTTGCTGATAAAGGGG+TGG | 0.493694 | 5.1:+30455708 | None:intergenic |
TTCCGCTGCAGCACGAGTCT+CGG | 0.494266 | 5.1:+30455217 | None:intergenic |
GTTTCAGATCATGAAGATCA+AGG | 0.495758 | 5.1:-30454765 | MS.gene77419:CDS |
GGTGAATTTGATCTCTTAAG+AGG | 0.500716 | 5.1:+30454480 | None:intergenic |
CAAGTGAAGCAAGCATTGAA+TGG | 0.508457 | 5.1:-30454824 | MS.gene77419:CDS |
GGGTGGATTGAATCAGCAAA+AGG | 0.523505 | 5.1:+30455725 | None:intergenic |
ACATCGTTTAATTCATCGAA+TGG | 0.528036 | 5.1:-30454711 | MS.gene77419:CDS |
TTCTTTACTCCAAGGTGAAG+AGG | 0.529025 | 5.1:+30455680 | None:intergenic |
CCTTTCTGTTGCTGATAAAG+GGG | 0.530407 | 5.1:+30455705 | None:intergenic |
GAGATGCCGAGGCGGCGTCA+TGG | 0.530887 | 5.1:-30454669 | MS.gene77419:CDS |
GGAGTAAAGAAAGAAGAAGA+TGG | 0.538350 | 5.1:-30455668 | MS.gene77419:CDS |
ACCTTAAACCTTGTCATCTG+AGG | 0.538940 | 5.1:+30454549 | None:intergenic |
AACCGAGACTCGTGCTGCAG+CGG | 0.552008 | 5.1:-30455219 | MS.gene77419:CDS |
TTCAACAAGTAGAGAATCCA+AGG | 0.552480 | 5.1:-30455151 | MS.gene77419:CDS |
CCCCTTTATCAGCAACAGAA+AGG | 0.557673 | 5.1:-30455705 | MS.gene77419:CDS |
AGAGAATCCAAGGAAAACAT+TGG | 0.562983 | 5.1:-30455141 | MS.gene77419:CDS |
GTTATTCTGAGAGGTGAAAG+TGG | 0.569101 | 5.1:+30455808 | None:intergenic |
TGTAATAGTCAGAAAGCTGT+TGG | 0.572244 | 5.1:-30454633 | MS.gene77419:CDS |
GTTATTGTTGTTATTCTGAG+AGG | 0.577463 | 5.1:+30455799 | None:intergenic |
CAGGTTGTAAAAGTGCACTT+TGG | 0.581251 | 5.1:+30455471 | None:intergenic |
CAATATGGAACTCCAAGTGT+TGG | 0.581850 | 5.1:-30455515 | MS.gene77419:CDS |
GAATTTGATCTCTTAAGAGG+TGG | 0.585210 | 5.1:+30454483 | None:intergenic |
CTCTTCATACTTGAACAACA+AGG | 0.600465 | 5.1:-30455759 | MS.gene77419:CDS |
AGAAAGGAACCTCTTCACCT+TGG | 0.604048 | 5.1:-30455689 | MS.gene77419:CDS |
AAATGTTGCCTCAGATGACA+AGG | 0.605171 | 5.1:-30454557 | MS.gene77419:CDS |
TCAGATGACAAGGTTTAAGG+TGG | 0.630245 | 5.1:-30454547 | MS.gene77419:CDS |
AAATCAACAAAGAGATGCCG+AGG | 0.636605 | 5.1:-30454680 | MS.gene77419:CDS |
GGTGCAAGAAATGAACAACA+TGG | 0.655080 | 5.1:-30454516 | MS.gene77419:CDS |
TCAACAAAGAGATGCCGAGG+CGG | 0.670252 | 5.1:-30454677 | MS.gene77419:CDS |
AAGAGATCAAATTCACCACA+TGG | 0.683671 | 5.1:-30454474 | MS.gene77419:CDS |
AACAACAATAACCTCCGTGG+TGG | 0.687252 | 5.1:-30455788 | MS.gene77419:CDS |
GTTGATGTAAGTGATCATGC+AGG | 0.688347 | 5.1:-30455344 | MS.gene77419:CDS |
ACAACAACAAATGAGAAACA+TGG | 0.697642 | 5.1:-30454591 | MS.gene77419:CDS |
AGCAAGCATTGAATGGAGTG+TGG | 0.726329 | 5.1:-30454817 | MS.gene77419:CDS |
ATGAAGAGAAAGAACCACCA+CGG | 0.734637 | 5.1:+30455774 | None:intergenic |
TACAAAAGTTGTGCACCATG+TGG | 0.736641 | 5.1:+30454459 | None:intergenic |
AATAACAACAATAACCTCCG+TGG | 0.749739 | 5.1:-30455791 | MS.gene77419:CDS |
AGTGGTTGCTGAGATAACCA+TGG | 0.758373 | 5.1:+30455826 | None:intergenic |
AAGAGAAAGAACCACCACGG+AGG | 0.793634 | 5.1:+30455777 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | GAATTAAACGATGTTCTTAT+TGG | + | chr5.1:30455559-30455578 | None:intergenic | 25.0% |
! | TTGCATCTTTCATCTAATAT+TGG | + | chr5.1:30455175-30455194 | None:intergenic | 25.0% |
!! | TTTCAAGTACTTGAGTTTAT+TGG | + | chr5.1:30454711-30454730 | None:intergenic | 25.0% |
AAAGAAGAAGATGGAGAAAT+TGG | - | chr5.1:30454617-30454636 | MS.gene77419:CDS | 30.0% | |
AAGGTTCAGTAGTAACTATA+AGG | - | chr5.1:30455530-30455549 | MS.gene77419:CDS | 30.0% | |
ACAACAACAAATGAGAAACA+TGG | - | chr5.1:30455685-30455704 | MS.gene77419:CDS | 30.0% | |
ACATCGTTTAATTCATCGAA+TGG | - | chr5.1:30455565-30455584 | MS.gene77419:CDS | 30.0% | |
AGAAATGAACAACATGGTTA+TGG | - | chr5.1:30455766-30455785 | MS.gene77419:CDS | 30.0% | |
GATGCTGAAAAATACTTCAA+TGG | - | chr5.1:30454647-30454666 | MS.gene77419:CDS | 30.0% | |
! | AATGATGATGATGATGATGT+TGG | - | chr5.1:30455304-30455323 | MS.gene77419:CDS | 30.0% |
! | AGAAAGTGCAAAGTTCAATA+TGG | - | chr5.1:30454746-30454765 | MS.gene77419:CDS | 30.0% |
! | AGTCAATAAGCTTTGATATG+AGG | - | chr5.1:30455194-30455213 | MS.gene77419:CDS | 30.0% |
! | ATGTTTGAAGAGTTTTTCTG+AGG | + | chr5.1:30454999-30455018 | None:intergenic | 30.0% |
! | GTTATTGTTGTTATTCTGAG+AGG | + | chr5.1:30454480-30454499 | None:intergenic | 30.0% |
!! | GAAGTAGAATTTTTCAAAGC+AGG | + | chr5.1:30454827-30454846 | None:intergenic | 30.0% |
AAGAGATCAAATTCACCACA+TGG | - | chr5.1:30455802-30455821 | MS.gene77419:CDS | 35.0% | |
AAGAGTCTTCTTGCTACTAT+TGG | - | chr5.1:30454878-30454897 | MS.gene77419:CDS | 35.0% | |
AATAACAACAATAACCTCCG+TGG | - | chr5.1:30454485-30454504 | MS.gene77419:CDS | 35.0% | |
AGAGAATCCAAGGAAAACAT+TGG | - | chr5.1:30455135-30455154 | MS.gene77419:CDS | 35.0% | |
CTCTTCATACTTGAACAACA+AGG | - | chr5.1:30454517-30454536 | MS.gene77419:CDS | 35.0% | |
CTTCTTCTTTCTTTACTCCA+AGG | + | chr5.1:30454607-30454626 | None:intergenic | 35.0% | |
CTTGAACAACAAGGAAGTAA+AGG | - | chr5.1:30454526-30454545 | MS.gene77419:CDS | 35.0% | |
CTTGAGTTTATTGGCATCTA+AGG | + | chr5.1:30454702-30454721 | None:intergenic | 35.0% | |
GAAGACTCTTTCTATGAACT+TGG | + | chr5.1:30454868-30454887 | None:intergenic | 35.0% | |
GAATTTGATCTCTTAAGAGG+TGG | + | chr5.1:30455796-30455815 | None:intergenic | 35.0% | |
GAGGCTAAAAATACCATCTT+GGG | - | chr5.1:30455213-30455232 | MS.gene77419:CDS | 35.0% | |
GGAGTAAAGAAAGAAGAAGA+TGG | - | chr5.1:30454608-30454627 | MS.gene77419:CDS | 35.0% | |
GGTGAATTTGATCTCTTAAG+AGG | + | chr5.1:30455799-30455818 | None:intergenic | 35.0% | |
GTTTCAGATCATGAAGATCA+AGG | - | chr5.1:30455511-30455530 | MS.gene77419:CDS | 35.0% | |
TCCTTTCTGTTGCTGATAAA+GGG | + | chr5.1:30454575-30454594 | None:intergenic | 35.0% | |
TGAGGCTAAAAATACCATCT+TGG | - | chr5.1:30455212-30455231 | MS.gene77419:CDS | 35.0% | |
TGCACTTTCTATTCTCTTGT+TGG | + | chr5.1:30454736-30454755 | None:intergenic | 35.0% | |
TGTAATAGTCAGAAAGCTGT+TGG | - | chr5.1:30455643-30455662 | MS.gene77419:CDS | 35.0% | |
TTCAACAAGTAGAGAATCCA+AGG | - | chr5.1:30455125-30455144 | MS.gene77419:CDS | 35.0% | |
TTCCTTTCTGTTGCTGATAA+AGG | + | chr5.1:30454576-30454595 | None:intergenic | 35.0% | |
! | AACACTTCCAATGTTTTCCT+TGG | + | chr5.1:30455145-30455164 | None:intergenic | 35.0% |
! | TTCAACAAAAGTGCAGTTCA+AGG | - | chr5.1:30454965-30454984 | MS.gene77419:CDS | 35.0% |
! | TTTGAGATTGAAAGCTTCAC+TGG | - | chr5.1:30455349-30455368 | MS.gene77419:CDS | 35.0% |
!! | AGGAAAACATTGGAAGTGTT+TGG | - | chr5.1:30455145-30455164 | MS.gene77419:CDS | 35.0% |
!! | AGGTTTAAGGTGGAAAGTTT+TGG | - | chr5.1:30455739-30455758 | MS.gene77419:CDS | 35.0% |
!! | TCACTTGGTGCATAGAAATT+TGG | + | chr5.1:30455439-30455458 | None:intergenic | 35.0% |
AAATCAACAAAGAGATGCCG+AGG | - | chr5.1:30455596-30455615 | MS.gene77419:CDS | 40.0% | |
AAATGTTGCCTCAGATGACA+AGG | - | chr5.1:30455719-30455738 | MS.gene77419:CDS | 40.0% | |
ACCTTAAACCTTGTCATCTG+AGG | + | chr5.1:30455730-30455749 | None:intergenic | 40.0% | |
ATGAAGAGAAAGAACCACCA+CGG | + | chr5.1:30454505-30454524 | None:intergenic | 40.0% | |
CAATATGGAACTCCAAGTGT+TGG | - | chr5.1:30454761-30454780 | MS.gene77419:CDS | 40.0% | |
CATTCAATGCTTGCTTCACT+TGG | + | chr5.1:30455454-30455473 | None:intergenic | 40.0% | |
CCTTTCTGTTGCTGATAAAG+GGG | + | chr5.1:30454574-30454593 | None:intergenic | 40.0% | |
GGTGCAAGAAATGAACAACA+TGG | - | chr5.1:30455760-30455779 | MS.gene77419:CDS | 40.0% | |
GTTGATGTAAGTGATCATGC+AGG | - | chr5.1:30454932-30454951 | MS.gene77419:CDS | 40.0% | |
TACAAAAGTTGTGCACCATG+TGG | + | chr5.1:30455820-30455839 | None:intergenic | 40.0% | |
TCAGATGACAAGGTTTAAGG+TGG | - | chr5.1:30455729-30455748 | MS.gene77419:CDS | 40.0% | |
TTCTTTACTCCAAGGTGAAG+AGG | + | chr5.1:30454599-30454618 | None:intergenic | 40.0% | |
! | ACAACATCACATGTTGCTTC+TGG | - | chr5.1:30455403-30455422 | MS.gene77419:CDS | 40.0% |
! | CAGGTTGTAAAAGTGCACTT+TGG | + | chr5.1:30454808-30454827 | None:intergenic | 40.0% |
! | GTTATTCTGAGAGGTGAAAG+TGG | + | chr5.1:30454471-30454490 | None:intergenic | 40.0% |
!! | CAAGTGAAGCAAGCATTGAA+TGG | - | chr5.1:30455452-30455471 | MS.gene77419:CDS | 40.0% |
!! | GTCATCTGAGGCAACATTTT+TGG | + | chr5.1:30455718-30455737 | None:intergenic | 40.0% |
AACAACAATAACCTCCGTGG+TGG | - | chr5.1:30454488-30454507 | MS.gene77419:CDS | 45.0% | |
AGAAAGGAACCTCTTCACCT+TGG | - | chr5.1:30454587-30454606 | MS.gene77419:CDS | 45.0% | |
CCCCTTTATCAGCAACAGAA+AGG | - | chr5.1:30454571-30454590 | MS.gene77419:CDS | 45.0% | |
CGGCGTCATGGAAAATTGTT+GGG | - | chr5.1:30455619-30455638 | MS.gene77419:CDS | 45.0% | |
CTTGATTCTGAGCCAACACT+TGG | + | chr5.1:30454776-30454795 | None:intergenic | 45.0% | |
GCCTCAGATGACAAGGTTTA+AGG | - | chr5.1:30455726-30455745 | MS.gene77419:CDS | 45.0% | |
TTCTGTTGCTGATAAAGGGG+TGG | + | chr5.1:30454571-30454590 | None:intergenic | 45.0% | |
TTTGTAGCAGCTTCCCAAGA+TGG | + | chr5.1:30455229-30455248 | None:intergenic | 45.0% | |
! | GCATCTAAGGTAGCAAGTCT+TGG | + | chr5.1:30454689-30454708 | None:intergenic | 45.0% |
!! | AGCAAGCATTGAATGGAGTG+TGG | - | chr5.1:30455459-30455478 | MS.gene77419:CDS | 45.0% |
!! | GGGTGGATTGAATCAGCAAA+AGG | + | chr5.1:30454554-30454573 | None:intergenic | 45.0% |
AAGAGAAAGAACCACCACGG+AGG | + | chr5.1:30454502-30454521 | None:intergenic | 50.0% | |
GCGGCGTCATGGAAAATTGT+TGG | - | chr5.1:30455618-30455637 | MS.gene77419:CDS | 50.0% | |
TCAACAAAGAGATGCCGAGG+CGG | - | chr5.1:30455599-30455618 | MS.gene77419:CDS | 50.0% | |
! | AATTTTCCATGACGCCGCCT+CGG | + | chr5.1:30455616-30455635 | None:intergenic | 50.0% |
!! | CAGAAAGCTGTTGGTGTTGC+TGG | - | chr5.1:30455652-30455671 | MS.gene77419:CDS | 50.0% |
AACCGAGACTCGTGCTGCAG+CGG | - | chr5.1:30455057-30455076 | MS.gene77419:CDS | 60.0% | |
TTCCGCTGCAGCACGAGTCT+CGG | + | chr5.1:30455062-30455081 | None:intergenic | 60.0% | |
GAGATGCCGAGGCGGCGTCA+TGG | - | chr5.1:30455607-30455626 | MS.gene77419:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 30454452 | 30455846 | 30454452 | ID=MS.gene77419 |
chr5.1 | mRNA | 30454452 | 30455846 | 30454452 | ID=MS.gene77419.t1;Parent=MS.gene77419 |
chr5.1 | exon | 30454452 | 30455846 | 30454452 | ID=MS.gene77419.t1.exon1;Parent=MS.gene77419.t1 |
chr5.1 | CDS | 30454452 | 30455846 | 30454452 | ID=cds.MS.gene77419.t1;Parent=MS.gene77419.t1 |
Gene Sequence |
Protein sequence |