Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77560.t1 | XP_024635450.1 | 91.2 | 373 | 17 | 3 | 1 | 371 | 53 | 411 | 2.20E-190 | 674.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77560.t1 | G7JBC2 | 91.2 | 373 | 17 | 3 | 1 | 371 | 1 | 359 | 1.6e-190 | 674.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene77560.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene77560 | 0.818101 | 2.34E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene77560 | 0.828351 | 9.43E-55 | -1.69E-46 |
| MS.gene051234 | MS.gene77560 | 0.811907 | 5.54E-51 | -1.69E-46 |
| MS.gene051328 | MS.gene77560 | 0.810468 | 1.14E-50 | -1.69E-46 |
| MS.gene051885 | MS.gene77560 | 0.808394 | 3.16E-50 | -1.69E-46 |
| MS.gene052335 | MS.gene77560 | 0.810025 | 1.42E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene77560 | 0.813784 | 2.15E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene77560 | 0.825728 | 4.00E-54 | -1.69E-46 |
| MS.gene053581 | MS.gene77560 | 0.826984 | 2.01E-54 | -1.69E-46 |
| MS.gene053599 | MS.gene77560 | 0.803875 | 2.83E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene77560 | 0.807571 | 4.74E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene77560 | 0.801559 | 8.50E-49 | -1.69E-46 |
| MS.gene055468 | MS.gene77560 | 0.828563 | 8.39E-55 | -1.69E-46 |
| MS.gene055469 | MS.gene77560 | 0.801349 | 9.39E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene77560 | 0.806288 | 8.85E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene77560 | 0.803966 | 2.71E-49 | -1.69E-46 |
| MS.gene055580 | MS.gene77560 | -0.818957 | 1.49E-52 | -1.69E-46 |
| MS.gene055891 | MS.gene77560 | 0.807131 | 5.87E-50 | -1.69E-46 |
| MS.gene056043 | MS.gene77560 | -0.827687 | 1.36E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77560.t1 | MTR_3g084750 | 90.885 | 373 | 18 | 3 | 1 | 371 | 53 | 411 | 0.0 | 664 |
| MS.gene77560.t1 | MTR_3g084750 | 90.617 | 373 | 19 | 3 | 1 | 371 | 1 | 359 | 0.0 | 662 |
| MS.gene77560.t1 | MTR_1g015930 | 46.185 | 249 | 130 | 3 | 44 | 292 | 50 | 294 | 3.41e-63 | 206 |
| MS.gene77560.t1 | MTR_1g019050 | 33.203 | 256 | 138 | 8 | 37 | 284 | 43 | 273 | 1.84e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77560.t1 | AT4G12240 | 56.977 | 344 | 126 | 5 | 38 | 371 | 30 | 361 | 3.38e-135 | 390 |
| MS.gene77560.t1 | AT5G52010 | 46.400 | 250 | 128 | 4 | 42 | 291 | 71 | 314 | 6.33e-63 | 206 |
Find 91 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGCTATTCTGAGCTTAT+TGG | 0.177466 | 3.2:+72928914 | None:intergenic |
| AGCTGAAACGGGCAGGGTTT+TGG | 0.228799 | 3.2:-72928518 | MS.gene77560:CDS |
| TATGTAGAGTAGGGCTGTTC+TGG | 0.246065 | 3.2:-72928983 | MS.gene77560:CDS |
| AGAATAGCTGCAGCTTCTTT+TGG | 0.246225 | 3.2:-72928903 | MS.gene77560:CDS |
| TGTCTCAAGACTGTTGTTAT+TGG | 0.251511 | 3.2:-72928345 | MS.gene77560:CDS |
| GTCTCAAGACTGTTGTTATT+GGG | 0.278322 | 3.2:-72928344 | MS.gene77560:CDS |
| AGGGAGTAGAAAGGTGAAAT+TGG | 0.313386 | 3.2:-72928628 | MS.gene77560:CDS |
| TGAGACGACACTGTCATTCT+TGG | 0.314624 | 3.2:-72929046 | MS.gene77560:CDS |
| GAGACGACACTGTCATTCTT+GGG | 0.319372 | 3.2:-72929045 | MS.gene77560:CDS |
| GGGTAAGTATGCTATGAAAA+TGG | 0.326589 | 3.2:-72928604 | MS.gene77560:CDS |
| TTCATAAGGTGGGATTGAAT+TGG | 0.333130 | 3.2:+72928941 | None:intergenic |
| TTGGGGTCACGGAAGGATTT+CGG | 0.339709 | 3.2:-72929027 | MS.gene77560:CDS |
| TCATAGGCGGGTTGAGTGTT+TGG | 0.351038 | 3.2:-72928424 | MS.gene77560:CDS |
| AGCTTATTGGCAACTTCATA+AGG | 0.365446 | 3.2:+72928927 | None:intergenic |
| ACAGGAACTGTTGTATCGTT+TGG | 0.373770 | 3.2:-72928799 | MS.gene77560:CDS |
| CTGTATCGGTTGTGGAAAAC+TGG | 0.377175 | 3.2:-72928233 | MS.gene77560:CDS |
| GTTGTATCGTTTGGAGGATA+AGG | 0.381598 | 3.2:-72928790 | MS.gene77560:CDS |
| CTCATGTTTGTCGTGTTTGT+GGG | 0.391232 | 3.2:-72928746 | MS.gene77560:CDS |
| GGGTTCAAACTGTGTTAGAT+AGG | 0.398462 | 3.2:-72928497 | MS.gene77560:CDS |
| CCTCATGTTTGTCGTGTTTG+TGG | 0.413883 | 3.2:-72928747 | MS.gene77560:CDS |
| GCCAAACCATACCCAACTTT+AGG | 0.418960 | 3.2:+72928546 | None:intergenic |
| TCCTAAAGTTGGGTATGGTT+TGG | 0.425982 | 3.2:-72928547 | MS.gene77560:CDS |
| TTGACTCCTAAAGTTGGGTA+TGG | 0.429889 | 3.2:-72928552 | MS.gene77560:CDS |
| TCATAAGGTGGGATTGAATT+GGG | 0.443856 | 3.2:+72928942 | None:intergenic |
| TTTGATGGGGAAGGCGAAGA+AGG | 0.453176 | 3.2:-72928259 | MS.gene77560:CDS |
| GATGCAGTTCCTAAAACATC+TGG | 0.457052 | 3.2:-72928135 | MS.gene77560:CDS |
| AAATTAGACTCCGATGATAA+TGG | 0.457209 | 3.2:-72928042 | MS.gene77560:CDS |
| TTGTATCGTTTGGAGGATAA+GGG | 0.462961 | 3.2:-72928789 | MS.gene77560:CDS |
| GCTGATGAGCTGAAACGGGC+AGG | 0.464292 | 3.2:-72928525 | MS.gene77560:CDS |
| TGGTGGATATGATGGATCAT+AGG | 0.472905 | 3.2:-72928440 | MS.gene77560:CDS |
| TCGTGATATATTGAAAAGAT+TGG | 0.474466 | 3.2:-72928205 | MS.gene77560:CDS |
| ATTGCTAAAAGTGTGGCTAT+TGG | 0.475645 | 3.2:+72928854 | None:intergenic |
| TGAGTGTTTGGTTCTTGTAT+CGG | 0.489683 | 3.2:-72928412 | MS.gene77560:CDS |
| TCTCAAGACTGTTGTTATTG+GGG | 0.494985 | 3.2:-72928343 | MS.gene77560:CDS |
| TATTGCATTGCAAAAGCATA+TGG | 0.499781 | 3.2:-72928460 | MS.gene77560:CDS |
| CACTGTCATTCTTGGGGTCA+CGG | 0.505218 | 3.2:-72929038 | MS.gene77560:CDS |
| ACTCTACATAGCTTCTCATT+CGG | 0.506498 | 3.2:+72928996 | None:intergenic |
| GAAGGAGGCTGTATCGGTTG+TGG | 0.514904 | 3.2:-72928241 | MS.gene77560:CDS |
| GCAGTGATGGAGTCTTGAAA+AGG | 0.516098 | 3.2:-72928314 | MS.gene77560:CDS |
| ATGTAGAGTAGGGCTGTTCT+GGG | 0.518539 | 3.2:-72928982 | MS.gene77560:CDS |
| GTTTGGCTGATGAGCTGAAA+CGG | 0.521781 | 3.2:-72928530 | MS.gene77560:CDS |
| GGCGAAGAAGGAGGCTGTAT+CGG | 0.522314 | 3.2:-72928247 | MS.gene77560:CDS |
| AAAGCATATGGTGGATATGA+TGG | 0.523680 | 3.2:-72928448 | MS.gene77560:CDS |
| GTCATTCTTGGGGTCACGGA+AGG | 0.525218 | 3.2:-72929034 | MS.gene77560:CDS |
| GGAACTGTTGTATCGTTTGG+AGG | 0.537669 | 3.2:-72928796 | MS.gene77560:CDS |
| GAAAATGGAAAAGTATAAGA+AGG | 0.542297 | 3.2:-72928589 | MS.gene77560:CDS |
| TCGTGAGAGGAGGAAAGAAC+AGG | 0.542932 | 3.2:-72928817 | MS.gene77560:CDS |
| CTCCTCTCACGAACAACGTG+GGG | 0.546733 | 3.2:+72928828 | None:intergenic |
| AATGAGAAGCTATGTAGAGT+AGG | 0.549536 | 3.2:-72928993 | MS.gene77560:CDS |
| AAGGCGGAATCAGATAGAAT+CGG | 0.553848 | 3.2:-72928655 | MS.gene77560:CDS |
| TATTGGCAACTTCATAAGGT+GGG | 0.553988 | 3.2:+72928931 | None:intergenic |
| CTATTGTGTAGAATATTCTA+CGG | 0.555084 | 3.2:+72929099 | None:intergenic |
| TTTGGCTGATGAGCTGAAAC+GGG | 0.555204 | 3.2:-72928529 | MS.gene77560:CDS |
| ACAAGGATGACAGAGGTCCT+TGG | 0.556458 | 3.2:-72928068 | MS.gene77560:CDS |
| TGGAGTTGTTCGACATATGG+TGG | 0.559762 | 3.2:-72928883 | MS.gene77560:CDS |
| ATGAGAAGCTATGTAGAGTA+GGG | 0.561703 | 3.2:-72928992 | MS.gene77560:CDS |
| CTGATGAGCTGAAACGGGCA+GGG | 0.566688 | 3.2:-72928524 | MS.gene77560:CDS |
| ATCGGCTAGAGGGAGTAGAA+AGG | 0.569230 | 3.2:-72928637 | MS.gene77560:CDS |
| AGAATATTCTACGGAACTTG+AGG | 0.572133 | 3.2:+72929108 | None:intergenic |
| GGATATGATGGATCATAGGC+GGG | 0.572337 | 3.2:-72928436 | MS.gene77560:CDS |
| GAGTAGAAAGGTGAAATTGG+TGG | 0.573655 | 3.2:-72928625 | MS.gene77560:CDS |
| ATCAGATAGAATCGGCTAGA+GGG | 0.575206 | 3.2:-72928647 | MS.gene77560:CDS |
| ATTTGCAACACCATTATCAT+CGG | 0.578456 | 3.2:+72928032 | None:intergenic |
| ATGAGCGTGAGCATGCGAAA+AGG | 0.580807 | 3.2:-72928674 | MS.gene77560:CDS |
| TAAGGTGGGATTGAATTGGG+TGG | 0.598304 | 3.2:+72928945 | None:intergenic |
| TCCTCCTCTCACGAACAACG+TGG | 0.601028 | 3.2:+72928826 | None:intergenic |
| AACAAATGTTTGAATGCCAG+TGG | 0.602266 | 3.2:+72929073 | None:intergenic |
| AGAATGACAGTGTCGTCTCA+AGG | 0.604787 | 3.2:+72929049 | None:intergenic |
| CCCACGTTGTTCGTGAGAGG+AGG | 0.604916 | 3.2:-72928827 | MS.gene77560:CDS |
| AATGCAATATCCGCAGCTTG+CGG | 0.606975 | 3.2:+72928474 | None:intergenic |
| AGACGACACTGTCATTCTTG+GGG | 0.607766 | 3.2:-72929044 | MS.gene77560:CDS |
| AGTAGAAAGGTGAAATTGGT+GGG | 0.609374 | 3.2:-72928624 | MS.gene77560:CDS |
| TGCATTGCAAAAGCATATGG+TGG | 0.610349 | 3.2:-72928457 | MS.gene77560:CDS |
| TTCTACACAATAGAAGCCAC+TGG | 0.610989 | 3.2:-72929089 | MS.gene77560:CDS |
| GTGGACATATAACCCAGAAG+TGG | 0.612100 | 3.2:-72928181 | MS.gene77560:CDS |
| TTATTGGCAACTTCATAAGG+TGG | 0.612373 | 3.2:+72928930 | None:intergenic |
| CCTCCTCTCACGAACAACGT+GGG | 0.620111 | 3.2:+72928827 | None:intergenic |
| GATGGGGAAGGCGAAGAAGG+AGG | 0.621967 | 3.2:-72928256 | MS.gene77560:CDS |
| AATCAGATAGAATCGGCTAG+AGG | 0.623094 | 3.2:-72928648 | MS.gene77560:CDS |
| ATGTTTGTCGTGTTTGTGGG+AGG | 0.623967 | 3.2:-72928743 | MS.gene77560:CDS |
| AGCGTGAGCATGCGAAAAGG+CGG | 0.626856 | 3.2:-72928671 | MS.gene77560:CDS |
| AGGATGACAGAGGTCCTTGG+TGG | 0.631079 | 3.2:-72928065 | MS.gene77560:CDS |
| GTTAGATAGGCCGCAAGCTG+CGG | 0.632475 | 3.2:-72928484 | MS.gene77560:CDS |
| TCATATTGATGATGACTACA+AGG | 0.634259 | 3.2:-72928085 | MS.gene77560:CDS |
| TTATGAAGGAAGCAAAGCTA+CGG | 0.640003 | 3.2:-72928368 | MS.gene77560:CDS |
| TGGATATGATGGATCATAGG+CGG | 0.652070 | 3.2:-72928437 | MS.gene77560:CDS |
| ATATATTGAAAAGATTGGAG+TGG | 0.659405 | 3.2:-72928200 | MS.gene77560:CDS |
| CCACAAACACGACAAACATG+AGG | 0.661362 | 3.2:+72928747 | None:intergenic |
| TCCTCTCACGAACAACGTGG+GGG | 0.698129 | 3.2:+72928829 | None:intergenic |
| TCGGAGTCTAATTTCCACCA+AGG | 0.709650 | 3.2:+72928051 | None:intergenic |
| GATGACTACAAGGATGACAG+AGG | 0.730694 | 3.2:-72928075 | MS.gene77560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATATATTGAAAAGATTGGAG+TGG | - | chr3.2:72928945-72928964 | MS.gene77560:CDS | 25.0% |
| ! | CTATTGTGTAGAATATTCTA+CGG | + | chr3.2:72928049-72928068 | None:intergenic | 25.0% |
| ! | TCGTGATATATTGAAAAGAT+TGG | - | chr3.2:72928940-72928959 | MS.gene77560:CDS | 25.0% |
| !! | GAAAATGGAAAAGTATAAGA+AGG | - | chr3.2:72928556-72928575 | MS.gene77560:CDS | 25.0% |
| AAATTAGACTCCGATGATAA+TGG | - | chr3.2:72929103-72929122 | MS.gene77560:CDS | 30.0% | |
| ATTTGCAACACCATTATCAT+CGG | + | chr3.2:72929116-72929135 | None:intergenic | 30.0% | |
| GGATAAAAAGAAACACAACT+TGG | - | chr3.2:72928985-72929004 | MS.gene77560:CDS | 30.0% | |
| ! | GTTTCTTTTTATCCACTTCT+GGG | + | chr3.2:72928979-72928998 | None:intergenic | 30.0% |
| ! | TATTGCATTGCAAAAGCATA+TGG | - | chr3.2:72928685-72928704 | MS.gene77560:CDS | 30.0% |
| ! | TGATTTTGTCGATGTTATGA+AGG | - | chr3.2:72928763-72928782 | MS.gene77560:CDS | 30.0% |
| ! | TGTTTCTTTTTATCCACTTC+TGG | + | chr3.2:72928980-72928999 | None:intergenic | 30.0% |
| !! | TCATATTGATGATGACTACA+AGG | - | chr3.2:72929060-72929079 | MS.gene77560:CDS | 30.0% |
| AACAAATGTTTGAATGCCAG+TGG | + | chr3.2:72928075-72928094 | None:intergenic | 35.0% | |
| AATGAGAAGCTATGTAGAGT+AGG | - | chr3.2:72928152-72928171 | MS.gene77560:CDS | 35.0% | |
| ACTCTACATAGCTTCTCATT+CGG | + | chr3.2:72928152-72928171 | None:intergenic | 35.0% | |
| AGAATATTCTACGGAACTTG+AGG | + | chr3.2:72928040-72928059 | None:intergenic | 35.0% | |
| AGCTTATTGGCAACTTCATA+AGG | + | chr3.2:72928221-72928240 | None:intergenic | 35.0% | |
| AGTAGAAAGGTGAAATTGGT+GGG | - | chr3.2:72928521-72928540 | MS.gene77560:CDS | 35.0% | |
| ATGAGAAGCTATGTAGAGTA+GGG | - | chr3.2:72928153-72928172 | MS.gene77560:CDS | 35.0% | |
| GGGTAAGTATGCTATGAAAA+TGG | - | chr3.2:72928541-72928560 | MS.gene77560:CDS | 35.0% | |
| TATTGGCAACTTCATAAGGT+GGG | + | chr3.2:72928217-72928236 | None:intergenic | 35.0% | |
| TCATAAGGTGGGATTGAATT+GGG | + | chr3.2:72928206-72928225 | None:intergenic | 35.0% | |
| TGTCTCAAGACTGTTGTTAT+TGG | - | chr3.2:72928800-72928819 | MS.gene77560:CDS | 35.0% | |
| TTATGAAGGAAGCAAAGCTA+CGG | - | chr3.2:72928777-72928796 | MS.gene77560:CDS | 35.0% | |
| TTATTGGCAACTTCATAAGG+TGG | + | chr3.2:72928218-72928237 | None:intergenic | 35.0% | |
| TTCATAAGGTGGGATTGAAT+TGG | + | chr3.2:72928207-72928226 | None:intergenic | 35.0% | |
| TTGTATCGTTTGGAGGATAA+GGG | - | chr3.2:72928356-72928375 | MS.gene77560:CDS | 35.0% | |
| ! | ATTGCTAAAAGTGTGGCTAT+TGG | + | chr3.2:72928294-72928313 | None:intergenic | 35.0% |
| ! | GTCTCAAGACTGTTGTTATT+GGG | - | chr3.2:72928801-72928820 | MS.gene77560:CDS | 35.0% |
| ! | TCATCAACTCCAGATGTTTT+AGG | + | chr3.2:72929022-72929041 | None:intergenic | 35.0% |
| ! | TCTCAAGACTGTTGTTATTG+GGG | - | chr3.2:72928802-72928821 | MS.gene77560:CDS | 35.0% |
| !! | AAAGCATATGGTGGATATGA+TGG | - | chr3.2:72928697-72928716 | MS.gene77560:CDS | 35.0% |
| !! | TGAGTGTTTGGTTCTTGTAT+CGG | - | chr3.2:72928733-72928752 | MS.gene77560:CDS | 35.0% |
| !! | TTCTTGGGAGGATATTTTGA+TGG | - | chr3.2:72928871-72928890 | MS.gene77560:CDS | 35.0% |
| !!! | CTGTTTTGACTCCTAAAGTT+GGG | - | chr3.2:72928588-72928607 | MS.gene77560:CDS | 35.0% |
| !!! | TCTTGGGAGGATATTTTGAT+GGG | - | chr3.2:72928872-72928891 | MS.gene77560:CDS | 35.0% |
| !!! | TTTTGGAGTTGTTCGACATA+TGG | - | chr3.2:72928259-72928278 | MS.gene77560:CDS | 35.0% |
| AAGGCGGAATCAGATAGAAT+CGG | - | chr3.2:72928490-72928509 | MS.gene77560:CDS | 40.0% | |
| AATCAGATAGAATCGGCTAG+AGG | - | chr3.2:72928497-72928516 | MS.gene77560:CDS | 40.0% | |
| ACAGGAACTGTTGTATCGTT+TGG | - | chr3.2:72928346-72928365 | MS.gene77560:CDS | 40.0% | |
| AGGGAGTAGAAAGGTGAAAT+TGG | - | chr3.2:72928517-72928536 | MS.gene77560:CDS | 40.0% | |
| ATCAGATAGAATCGGCTAGA+GGG | - | chr3.2:72928498-72928517 | MS.gene77560:CDS | 40.0% | |
| CTCATGTTTGTCGTGTTTGT+GGG | - | chr3.2:72928399-72928418 | MS.gene77560:CDS | 40.0% | |
| CTCCCAAGAAAAAGCAGTAT+CGG | + | chr3.2:72928861-72928880 | None:intergenic | 40.0% | |
| GAGTAGAAAGGTGAAATTGG+TGG | - | chr3.2:72928520-72928539 | MS.gene77560:CDS | 40.0% | |
| GATGCAGTTCCTAAAACATC+TGG | - | chr3.2:72929010-72929029 | MS.gene77560:CDS | 40.0% | |
| GGGTTCAAACTGTGTTAGAT+AGG | - | chr3.2:72928648-72928667 | MS.gene77560:CDS | 40.0% | |
| GTTGTATCGTTTGGAGGATA+AGG | - | chr3.2:72928355-72928374 | MS.gene77560:CDS | 40.0% | |
| TCCTAAAGTTGGGTATGGTT+TGG | - | chr3.2:72928598-72928617 | MS.gene77560:CDS | 40.0% | |
| TGCAGCTATTCTGAGCTTAT+TGG | + | chr3.2:72928234-72928253 | None:intergenic | 40.0% | |
| TTCTACACAATAGAAGCCAC+TGG | - | chr3.2:72928056-72928075 | MS.gene77560:CDS | 40.0% | |
| TTGACTCCTAAAGTTGGGTA+TGG | - | chr3.2:72928593-72928612 | MS.gene77560:CDS | 40.0% | |
| ! | AGAATAGCTGCAGCTTCTTT+TGG | - | chr3.2:72928242-72928261 | MS.gene77560:CDS | 40.0% |
| ! | TGCATTGCAAAAGCATATGG+TGG | - | chr3.2:72928688-72928707 | MS.gene77560:CDS | 40.0% |
| !! | ATTGGGGATTTTAGCAGTGA+TGG | - | chr3.2:72928818-72928837 | MS.gene77560:CDS | 40.0% |
| !! | TGGATATGATGGATCATAGG+CGG | - | chr3.2:72928708-72928727 | MS.gene77560:CDS | 40.0% |
| !! | TGGTGGATATGATGGATCAT+AGG | - | chr3.2:72928705-72928724 | MS.gene77560:CDS | 40.0% |
| !!! | CTTGGGAGGATATTTTGATG+GGG | - | chr3.2:72928873-72928892 | MS.gene77560:CDS | 40.0% |
| !!! | GCTGTTTTGACTCCTAAAGT+TGG | - | chr3.2:72928587-72928606 | MS.gene77560:CDS | 40.0% |
| !!! | TGCCGATACTGCTTTTTCTT+GGG | - | chr3.2:72928856-72928875 | MS.gene77560:CDS | 40.0% |
| AATGCAATATCCGCAGCTTG+CGG | + | chr3.2:72928674-72928693 | None:intergenic | 45.0% | |
| AGAATGACAGTGTCGTCTCA+AGG | + | chr3.2:72928099-72928118 | None:intergenic | 45.0% | |
| AGACGACACTGTCATTCTTG+GGG | - | chr3.2:72928101-72928120 | MS.gene77560:CDS | 45.0% | |
| ATGTAGAGTAGGGCTGTTCT+GGG | - | chr3.2:72928163-72928182 | MS.gene77560:CDS | 45.0% | |
| ATGTTTGTCGTGTTTGTGGG+AGG | - | chr3.2:72928402-72928421 | MS.gene77560:CDS | 45.0% | |
| CCACAAACACGACAAACATG+AGG | + | chr3.2:72928401-72928420 | None:intergenic | 45.0% | |
| CCTCATGTTTGTCGTGTTTG+TGG | - | chr3.2:72928398-72928417 | MS.gene77560:CDS | 45.0% | |
| GAGACGACACTGTCATTCTT+GGG | - | chr3.2:72928100-72928119 | MS.gene77560:CDS | 45.0% | |
| GATGACTACAAGGATGACAG+AGG | - | chr3.2:72929070-72929089 | MS.gene77560:CDS | 45.0% | |
| GCCAAACCATACCCAACTTT+AGG | + | chr3.2:72928602-72928621 | None:intergenic | 45.0% | |
| GGAACTGTTGTATCGTTTGG+AGG | - | chr3.2:72928349-72928368 | MS.gene77560:CDS | 45.0% | |
| GTGGACATATAACCCAGAAG+TGG | - | chr3.2:72928964-72928983 | MS.gene77560:CDS | 45.0% | |
| GTTTGGCTGATGAGCTGAAA+CGG | - | chr3.2:72928615-72928634 | MS.gene77560:CDS | 45.0% | |
| TAAGGTGGGATTGAATTGGG+TGG | + | chr3.2:72928203-72928222 | None:intergenic | 45.0% | |
| TATGTAGAGTAGGGCTGTTC+TGG | - | chr3.2:72928162-72928181 | MS.gene77560:CDS | 45.0% | |
| TCGGAGTCTAATTTCCACCA+AGG | + | chr3.2:72929097-72929116 | None:intergenic | 45.0% | |
| TGAGACGACACTGTCATTCT+TGG | - | chr3.2:72928099-72928118 | MS.gene77560:CDS | 45.0% | |
| TGGAGTTGTTCGACATATGG+TGG | - | chr3.2:72928262-72928281 | MS.gene77560:CDS | 45.0% | |
| TTTGGCTGATGAGCTGAAAC+GGG | - | chr3.2:72928616-72928635 | MS.gene77560:CDS | 45.0% | |
| ! | GCAGTGATGGAGTCTTGAAA+AGG | - | chr3.2:72928831-72928850 | MS.gene77560:CDS | 45.0% |
| !! | CTGTATCGGTTGTGGAAAAC+TGG | - | chr3.2:72928912-72928931 | MS.gene77560:CDS | 45.0% |
| !! | GGATATGATGGATCATAGGC+GGG | - | chr3.2:72928709-72928728 | MS.gene77560:CDS | 45.0% |
| !!! | CGATACTGCTTTTTCTTGGG+AGG | - | chr3.2:72928859-72928878 | MS.gene77560:CDS | 45.0% |
| !!! | CTGCCGATACTGCTTTTTCT+TGG | - | chr3.2:72928855-72928874 | MS.gene77560:CDS | 45.0% |
| !!! | GGAGGATATTTTGATGGGGA+AGG | - | chr3.2:72928877-72928896 | MS.gene77560:CDS | 45.0% |
| ACAAGGATGACAGAGGTCCT+TGG | - | chr3.2:72929077-72929096 | MS.gene77560:CDS | 50.0% | |
| ATCGGCTAGAGGGAGTAGAA+AGG | - | chr3.2:72928508-72928527 | MS.gene77560:CDS | 50.0% | |
| ATGAGCGTGAGCATGCGAAA+AGG | - | chr3.2:72928471-72928490 | MS.gene77560:CDS | 50.0% | |
| CACTGTCATTCTTGGGGTCA+CGG | - | chr3.2:72928107-72928126 | MS.gene77560:CDS | 50.0% | |
| GGGGGACATTGCTAAAAGTG+TGG | + | chr3.2:72928301-72928320 | None:intergenic | 50.0% | |
| TCGTGAGAGGAGGAAAGAAC+AGG | - | chr3.2:72928328-72928347 | MS.gene77560:CDS | 50.0% | |
| TTGGGGTCACGGAAGGATTT+CGG | - | chr3.2:72928118-72928137 | MS.gene77560:CDS | 50.0% | |
| TTTGATGGGGAAGGCGAAGA+AGG | - | chr3.2:72928886-72928905 | MS.gene77560:CDS | 50.0% | |
| !! | TCATAGGCGGGTTGAGTGTT+TGG | - | chr3.2:72928721-72928740 | MS.gene77560:CDS | 50.0% |
| AGCGTGAGCATGCGAAAAGG+CGG | - | chr3.2:72928474-72928493 | MS.gene77560:CDS | 55.0% | |
| AGGATGACAGAGGTCCTTGG+TGG | - | chr3.2:72929080-72929099 | MS.gene77560:CDS | 55.0% | |
| CCTCCTCTCACGAACAACGT+GGG | + | chr3.2:72928321-72928340 | None:intergenic | 55.0% | |
| CTCCTCTCACGAACAACGTG+GGG | + | chr3.2:72928320-72928339 | None:intergenic | 55.0% | |
| CTGATGAGCTGAAACGGGCA+GGG | - | chr3.2:72928621-72928640 | MS.gene77560:CDS | 55.0% | |
| GGCGAAGAAGGAGGCTGTAT+CGG | - | chr3.2:72928898-72928917 | MS.gene77560:CDS | 55.0% | |
| GTCATTCTTGGGGTCACGGA+AGG | - | chr3.2:72928111-72928130 | MS.gene77560:CDS | 55.0% | |
| GTTAGATAGGCCGCAAGCTG+CGG | - | chr3.2:72928661-72928680 | MS.gene77560:CDS | 55.0% | |
| TCCTCCTCTCACGAACAACG+TGG | + | chr3.2:72928322-72928341 | None:intergenic | 55.0% | |
| TCCTCTCACGAACAACGTGG+GGG | + | chr3.2:72928319-72928338 | None:intergenic | 55.0% | |
| ! | AGCTGAAACGGGCAGGGTTT+TGG | - | chr3.2:72928627-72928646 | MS.gene77560:CDS | 55.0% |
| ! | GCTGAAACGGGCAGGGTTTT+GGG | - | chr3.2:72928628-72928647 | MS.gene77560:CDS | 55.0% |
| !! | GAAGGAGGCTGTATCGGTTG+TGG | - | chr3.2:72928904-72928923 | MS.gene77560:CDS | 55.0% |
| CCCACGTTGTTCGTGAGAGG+AGG | - | chr3.2:72928318-72928337 | MS.gene77560:CDS | 60.0% | |
| GATGGGGAAGGCGAAGAAGG+AGG | - | chr3.2:72928889-72928908 | MS.gene77560:CDS | 60.0% | |
| GCTGATGAGCTGAAACGGGC+AGG | - | chr3.2:72928620-72928639 | MS.gene77560:CDS | 60.0% | |
| TCCCCCACGTTGTTCGTGAG+AGG | - | chr3.2:72928315-72928334 | MS.gene77560:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 72928026 | 72929141 | 72928026 | ID=MS.gene77560 |
| chr3.2 | mRNA | 72928026 | 72929141 | 72928026 | ID=MS.gene77560.t1;Parent=MS.gene77560 |
| chr3.2 | exon | 72928026 | 72929141 | 72928026 | ID=MS.gene77560.t1.exon1;Parent=MS.gene77560.t1 |
| chr3.2 | CDS | 72928026 | 72929141 | 72928026 | ID=cds.MS.gene77560.t1;Parent=MS.gene77560.t1 |
| Gene Sequence |
| Protein sequence |
