AlfalfaGEDB | MS.gene77682

M. sativa cultivar XinJiangDaYe / MS.gene77682

KEGG: K13095
GO: GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0097159 GO:1901363
PFAM: PF00013.32 PF00076.25 PF16275.8

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77682.t1	XP_013455377.1	91.8	767	59	1	1	763	1	767	8.50E-282	979.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77682.t1	Q9LU44	83.8	433	62	3	105	530	132	563	9.8e-186	651.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77682.t1	A0A072UK27	91.8	767	59	1	1	763	1	767	6.2e-282	979.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049297	MS.gene77682	-0.808701	2.72E-50	-1.69E-46
MS.gene050227	MS.gene77682	-0.808369	3.20E-50	-1.69E-46
MS.gene050228	MS.gene77682	-0.802144	6.45E-49	-1.69E-46
MS.gene050303	MS.gene77682	-0.816096	6.59E-52	-1.69E-46
MS.gene050330	MS.gene77682	0.832684	8.22E-56	-1.69E-46
MS.gene050623	MS.gene77682	0.805335	1.40E-49	-1.69E-46
MS.gene052176	MS.gene77682	-0.858016	1.10E-62	-1.69E-46
MS.gene052302	MS.gene77682	-0.809825	1.56E-50	-1.69E-46
MS.gene052309	MS.gene77682	0.879368	1.32E-69	-1.69E-46
MS.gene052358	MS.gene77682	0.850385	1.76E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene037361	MS.gene77682	PPI
MS.gene067412	MS.gene77682	PPI
MS.gene09686	MS.gene77682	PPI
MS.gene21500	MS.gene77682	PPI
MS.gene54212	MS.gene77682	PPI
MS.gene64193	MS.gene77682	PPI
MS.gene77682	MS.gene069405	PPI
MS.gene77682	MS.gene015344	PPI
MS.gene77682	MS.gene86409	PPI
MS.gene77682	MS.gene63990	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77682.t1	MTR_4g036415	98.305	767	9	1	1	763	1	767	0.0	1514
MS.gene77682.t1	MTR_2g005590	47.154	123	59	2	213	329	162	284	1.98e-26	110
MS.gene77682.t1	MTR_7g074100	46.341	123	60	3	213	329	136	258	6.65e-26	108
MS.gene77682.t1	MTR_8g005550	44.776	134	67	4	202	329	121	253	1.08e-25	107
MS.gene77682.t1	MTR_8g006580	44.776	134	67	4	202	329	121	253	1.08e-25	107
MS.gene77682.t1	MTR_8g006605	44.776	134	67	4	202	329	121	253	1.08e-25	107
MS.gene77682.t1	MTR_8g005430	44.361	133	68	3	202	329	121	252	1.87e-25	107
MS.gene77682.t1	MTR_2g005590	46.774	124	59	3	213	329	162	285	7.62e-25	106
MS.gene77682.t1	MTR_3g010220	39.623	159	85	5	180	329	113	269	1.92e-24	104
MS.gene77682.t1	MTR_3g083770	30.973	226	119	6	91	304	68	268	1.92e-24	109

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77682.t1	AT5G51300	66.957	805	196	18	5	763	24	804	0.0	944
MS.gene77682.t1	AT5G51300	66.957	805	196	18	5	763	24	804	0.0	944
MS.gene77682.t1	AT5G51300	66.957	805	196	18	5	763	24	804	0.0	944
MS.gene77682.t1	AT1G09660	46.565	131	62	3	207	329	142	272	5.06e-28	115
MS.gene77682.t1	AT1G09660	46.565	131	62	3	207	329	142	272	5.06e-28	115
MS.gene77682.t1	AT3G08620	44.361	133	67	3	202	328	83	214	6.19e-26	107
MS.gene77682.t1	AT3G08620	44.361	133	67	3	202	328	128	259	7.91e-26	108
MS.gene77682.t1	AT2G38610	43.704	135	69	3	202	330	129	262	3.40e-25	106
MS.gene77682.t1	AT2G38610	43.704	135	69	3	202	330	129	262	3.40e-25	106
MS.gene77682.t1	AT4G26480	44.715	123	62	3	213	329	78	200	5.73e-24	101

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Find 292 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATCATCCTCAAGAGT+GGG	0.620492	4.4:+67504534	None:intergenic
AAATCAGGAAGTTGAATTAC+CGG	0.338043	4.4:+67505572	None:intergenic
AACCTATATATGATAATATG+GGG	0.606432	4.4:-67505421	MS.gene77682:CDS
AACGACGCCGTAGAAGCCGA+TGG	0.617732	4.4:-67505685	MS.gene77682:CDS
AAGAGGATGGAGAAGGAGAC+TGG	0.491145	4.4:-67505185	MS.gene77682:CDS
AAGATTGTGATTCGGGGTAA+AGG	0.445533	4.4:-67505158	MS.gene77682:CDS
AAGGGTCGGTGAAAGAAGGT+AGG	0.578669	4.4:-67505139	MS.gene77682:CDS
AAGGTAGGTTGCAGCAGAAG+AGG	0.533663	4.4:-67505124	MS.gene77682:CDS
AATCCACTTCTCTCCGAAAA+CGG	0.458472	4.4:-67505779	MS.gene77682:CDS
AATCTGGCTGTGGGTCCCAT+CGG	0.566587	4.4:+67505669	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCAGGAAGTTGAATTAC+CGG	+	chr4.4:67503960-67503979	None:intergenic	30.0%
AATTCAACTTCCTGATTTCA+TGG	-	chr4.4:67503962-67503981	MS.gene77682:CDS	30.0%
ATAAGTAGAATGTTGCAATC+TGG	-	chr4.4:67504038-67504057	MS.gene77682:CDS	30.0%
ATTCAACTTCCTGATTTCAT+GGG	-	chr4.4:67503963-67503982	MS.gene77682:CDS	30.0%
CACCAAATTGTTGAAACAAT+TGG	+	chr4.4:67505024-67505043	None:intergenic	30.0%
GATTAAGACAACTAGTACTT+TGG	-	chr4.4:67504829-67504848	MS.gene77682:CDS	30.0%
TGATGAGTATCAGAATTTCT+TGG	-	chr4.4:67504775-67504794	MS.gene77682:CDS	30.0%
TTCTGAGTATGAGAAATTCA+TGG	-	chr4.4:67505885-67505904	MS.gene77682:CDS	30.0%
AATGCAATTGTTGCCATGAA+TGG	-	chr4.4:67505136-67505155	MS.gene77682:CDS	35.0%
ACAACTAGTACTTTGGCAAT+TGG	-	chr4.4:67504836-67504855	MS.gene77682:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	67503630	67505921	67503630	ID=MS.gene77682
chr4.4	mRNA	67503630	67505921	67503630	ID=MS.gene77682.t1;Parent=MS.gene77682
chr4.4	exon	67503630	67505921	67503630	ID=MS.gene77682.t1.exon1;Parent=MS.gene77682.t1
chr4.4	CDS	67503630	67505921	67503630	ID=cds.MS.gene77682.t1;Parent=MS.gene77682.t1

Gene Sequence

>MS.gene77682

ATGGAGGCTCTCGATTCCAATCCACTACCGCTCAACGATAAACCCGAAACCCTAATTCCCCAAAACGGCATCAACGGCACCACCACCACCGATAACACCGATTCACGTCCACCGATTCCAAATCCACTTCTCTCCGAAAACGGTTTAACCGGCGGCAACACCCGAAGCGGAACCGACAAAGATCAATCAGGCGGAGAAGAAGAAACAACAAGCAAACGACGCCGTAGAAGCCGATGGGACCCACAGCCAGATTCAAACGATCAGAACGGCGAAGCCGCCACCGGGACGAAGAAAAGGAAATCCAGATGGGCTGATGACGAACCGAAACCGGTAATTCAACTTCCTGATTTCATGGGTGGTATTGAATTTGATCCTGAAATTCAAACATTGAATAGTAGATTGCTTGAGATAAGTAGAATGTTGCAATCTGGTTTGCCTTTAGATGATCGTCCTGAAGGGGCTAGATCTCCTTCACCTGAACCTATATATGATAATATGGGGATTAGGATTAATACTAGAGAGTATCGTGCTCGTGAGAGGTTTCAGAAAGAGAGACAAGAGATTATTTCACAGATTATTAAGAAAAATCCTGCTTTTAAGCCACCTGCTGATTATAGACCACCAAAGCTTCAGAAGAAGCTTTATATACCGATGAAAGAGTATCCGGGGTATAATTTTATTGGGCTTATTATTGGGCCTAGGGGGAATACTCAGAAGAGGATGGAGAAGGAGACTGGTGCTAAGATTGTGATTCGGGGTAAAGGGTCGGTGAAAGAAGGTAGGTTGCAGCAGAAGAGGGATTTGAAACCGGATCCGTCGGAGAATGAGGATTTGCATGTTTTGGTTGAGGCGGATACGGCTGATGCGCTTGAGGCTGCGGCTGGTATGGTGGAGAAGCTATTGCAGCCTGTGGATGAGGTTTTGAATGAGCATAAGAGGCAGCAACTTAGGGAGCTTGCGGCTTTGAATGGGACGATTAGGGATGAAGAGTATTGTAGGTTGTGTGGTGAGCCTGGGCATCGGCAGTATGCGTGTCCTACAAGGACTTCGACGTTTAAGAGTGAGGTTGTTTGTAAGCATTGTGGGGATGGTGGTCATCCTAGTATTGATTGTCCGGTGAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAATTTCTTGGCTGAGTTGGGTGGTACAGTTCCTGAATCTGCGATTAAGACAACTAGTACTTTGGCAATTGGTTCGGGCAGTTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTGGTTCTGGTGGTAGTACACCACAAGCTGGATTAGGGGCTGGTGCGGTTAAAAAGGAAATTGATGATACAAATTTGTACATTGGGTATTTGCCACCCACTCTTGAGGATGATGGTTTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCAAAAGTTATTAAGGATCGAATGACAGGTTTGAGTAAAGGATACGGGTTTGTGAAGTATGCTGATATCACAATGGCAAACAATGCAATTGTTGCCATGAATGGCTATCGCCTTGAGGGTCGAACTATTGCAGTAAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCAGGCCCACCTGCGTCGGCTGTGCCCACTTATCCTGTTCAAAGCCAGCCAATTGGTGCCTATCCATCCCAACAATATACCGGTGGCGGTCCCATTGGGAGTGCTCCTCCTGGGAGTTATGGAGGCACTCCTGTCCCATGGGGACCTCCTATTCCTCCTCCATACAATCCTTATGCTCCTCCCCCGCCTGGATCAACTATGTATCCTCCTATGCATGGTCAACCTATGCCTCCTTATGGTGTTCAATACCCACCCATGCCGACAGGTCCCCCTGGTGCCACTCCCCCACCCCCTGCTTCTGGTGAAATGCAGCAGAATTACCCTCCTGGGGTGCAGTCTGATAATAATTCATCTACTCAGTCTGTACCGACCAACATGTATGGGAACACAATGCCTTCAATGCCACCAGCAGCTCCACCAACATATCCTGCATCTTATGGATATCCTCCTCCACCTTACTATAATGCAGTTCCTCCACCACCTCCCCCTCCTGCCCCTACTTCAGACCAATCACACAGCATTGCAAATGCGCCTTGGGCCAGTAATCATTCCGCCCCTCCTCCTCCTTCGTCTGCAGATCAATCCCAGAGCATTGGAAATGTGCCTCCACCTATGCCTCCTCCTAACTCATCGGCGGAAAAGACGTCATATGGAGCTGATTCTGAGTATGAGAAATTCATGGCAGAGATGAAATGA

Protein sequence

>MS.gene77682.t1

MEALDSNPLPLNDKPETLIPQNGINGTTTTDNTDSRPPIPNPLLSENGLTGGNTRSGTDKDQSGGEEETTSKRRRRSRWDPQPDSNDQNGEAATGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQTLNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERFQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTADALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESAIKTTSTLAIGSGSSGSNPPWANNSGSGGSTPQAGLGAGAVKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAIVAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVQSQPIGAYPSQQYTGGGPIGSAPPGSYGGTPVPWGPPIPPPYNPYAPPPPGSTMYPPMHGQPMPPYGVQYPPMPTGPPGATPPPPASGEMQQNYPPGVQSDNNSSTQSVPTNMYGNTMPSMPPAAPPTYPASYGYPPPPYYNAVPPPPPPPAPTSDQSHSIANAPWASNHSAPPPPSSADQSQSIGNVPPPMPPPNSSAEKTSYGADSEYEKFMAEMK