Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77767.t1 | XP_013445244.1 | 92.1 | 152 | 12 | 0 | 1 | 152 | 1 | 152 | 9.30E-79 | 302.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77767.t1 | Q9SSK5 | 34.0 | 150 | 96 | 3 | 3 | 150 | 7 | 155 | 8.9e-22 | 104.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77767.t1 | A0A072U0G0 | 92.1 | 152 | 12 | 0 | 1 | 152 | 1 | 152 | 6.7e-79 | 302.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene77767 | 0.812577 | 3.95E-51 | -1.69E-46 |
| MS.gene049549 | MS.gene77767 | 0.808384 | 3.18E-50 | -1.69E-46 |
| MS.gene052211 | MS.gene77767 | 0.822499 | 2.29E-53 | -1.69E-46 |
| MS.gene05240 | MS.gene77767 | 0.805608 | 1.23E-49 | -1.69E-46 |
| MS.gene054146 | MS.gene77767 | 0.803752 | 3.00E-49 | -1.69E-46 |
| MS.gene054277 | MS.gene77767 | 0.819998 | 8.65E-53 | -1.69E-46 |
| MS.gene054742 | MS.gene77767 | 0.810131 | 1.34E-50 | -1.69E-46 |
| MS.gene056590 | MS.gene77767 | 0.810162 | 1.32E-50 | -1.69E-46 |
| MS.gene056591 | MS.gene77767 | 0.808484 | 3.03E-50 | -1.69E-46 |
| MS.gene056697 | MS.gene77767 | 0.805718 | 1.17E-49 | -1.69E-46 |
| MS.gene056920 | MS.gene77767 | 0.810738 | 9.93E-51 | -1.69E-46 |
| MS.gene056988 | MS.gene77767 | 0.800163 | 1.64E-48 | -1.69E-46 |
| MS.gene057261 | MS.gene77767 | 0.802903 | 4.50E-49 | -1.69E-46 |
| MS.gene058381 | MS.gene77767 | 0.982989 | 1.56E-156 | -1.69E-46 |
| MS.gene060087 | MS.gene77767 | 0.839241 | 1.78E-57 | -1.69E-46 |
| MS.gene060358 | MS.gene77767 | 0.822692 | 2.07E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77767.t1 | MTR_8g045555 | 92.105 | 152 | 12 | 0 | 1 | 152 | 1 | 152 | 1.47e-103 | 293 |
| MS.gene77767.t1 | MTR_8g045520 | 72.848 | 151 | 41 | 0 | 1 | 151 | 1 | 151 | 9.60e-85 | 245 |
| MS.gene77767.t1 | MTR_8g045570 | 71.053 | 152 | 44 | 0 | 1 | 152 | 1 | 152 | 8.48e-82 | 238 |
| MS.gene77767.t1 | MTR_8g045490 | 71.711 | 152 | 43 | 0 | 1 | 152 | 1 | 152 | 2.25e-81 | 237 |
| MS.gene77767.t1 | MTR_8g045400 | 69.737 | 152 | 45 | 1 | 1 | 152 | 1 | 151 | 3.13e-78 | 229 |
| MS.gene77767.t1 | MTR_8g045695 | 67.763 | 152 | 48 | 1 | 1 | 152 | 1 | 151 | 6.66e-77 | 226 |
| MS.gene77767.t1 | MTR_8g045300 | 65.563 | 151 | 52 | 0 | 1 | 151 | 1 | 151 | 1.67e-76 | 224 |
| MS.gene77767.t1 | MTR_8g045735 | 65.132 | 152 | 52 | 1 | 1 | 152 | 1 | 151 | 1.34e-73 | 217 |
| MS.gene77767.t1 | MTR_8g045665 | 65.132 | 152 | 52 | 1 | 1 | 152 | 1 | 151 | 3.91e-73 | 216 |
| MS.gene77767.t1 | MTR_8g045640 | 65.132 | 152 | 52 | 1 | 1 | 152 | 1 | 151 | 2.14e-72 | 214 |
| MS.gene77767.t1 | MTR_8g045560 | 63.816 | 152 | 54 | 1 | 1 | 152 | 1 | 151 | 2.40e-70 | 209 |
| MS.gene77767.t1 | MTR_1g030810 | 43.137 | 153 | 84 | 2 | 1 | 151 | 1 | 152 | 2.66e-41 | 135 |
| MS.gene77767.t1 | MTR_1g030820 | 37.255 | 153 | 93 | 2 | 1 | 151 | 1 | 152 | 1.11e-37 | 126 |
| MS.gene77767.t1 | MTR_1g030840 | 39.103 | 156 | 87 | 4 | 1 | 149 | 1 | 155 | 1.29e-32 | 114 |
| MS.gene77767.t1 | MTR_1g031640 | 35.811 | 148 | 86 | 4 | 7 | 152 | 7 | 147 | 1.02e-27 | 100 |
| MS.gene77767.t1 | MTR_8g012550 | 33.103 | 145 | 94 | 3 | 6 | 149 | 8 | 150 | 3.49e-26 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77767.t1 | AT1G70890 | 34.000 | 150 | 96 | 3 | 3 | 150 | 7 | 155 | 3.07e-27 | 100 |
| MS.gene77767.t1 | AT5G28010 | 34.000 | 150 | 96 | 3 | 3 | 150 | 15 | 163 | 1.20e-26 | 98.6 |
| MS.gene77767.t1 | AT5G28010 | 34.000 | 150 | 96 | 3 | 3 | 150 | 15 | 163 | 1.20e-26 | 98.6 |
| MS.gene77767.t1 | AT1G70840 | 32.667 | 150 | 98 | 3 | 3 | 150 | 20 | 168 | 1.46e-26 | 98.6 |
| MS.gene77767.t1 | AT1G70830 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 2.01e-26 | 98.2 |
| MS.gene77767.t1 | AT1G70830 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 3.46e-26 | 98.6 |
| MS.gene77767.t1 | AT1G70830 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 1.28e-25 | 98.2 |
| MS.gene77767.t1 | AT1G70830 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 4.19e-25 | 98.6 |
| MS.gene77767.t1 | AT1G70830 | 33.333 | 150 | 97 | 3 | 3 | 150 | 184 | 332 | 2.10e-23 | 94.0 |
| MS.gene77767.t1 | AT1G70850 | 32.667 | 150 | 98 | 3 | 3 | 150 | 9 | 157 | 4.39e-24 | 94.0 |
| MS.gene77767.t1 | AT1G70830 | 33.333 | 150 | 97 | 3 | 3 | 150 | 137 | 285 | 8.32e-24 | 94.4 |
| MS.gene77767.t1 | AT1G70830 | 32.258 | 93 | 62 | 1 | 59 | 150 | 31 | 123 | 5.24e-14 | 67.8 |
| MS.gene77767.t1 | AT1G70850 | 32.667 | 150 | 98 | 3 | 3 | 150 | 9 | 157 | 1.43e-23 | 94.0 |
| MS.gene77767.t1 | AT1G70850 | 33.571 | 140 | 90 | 3 | 13 | 150 | 175 | 313 | 4.43e-23 | 92.8 |
| MS.gene77767.t1 | AT1G70850 | 32.667 | 150 | 98 | 3 | 3 | 150 | 9 | 157 | 1.43e-23 | 94.0 |
| MS.gene77767.t1 | AT1G70850 | 33.571 | 140 | 90 | 3 | 13 | 150 | 175 | 313 | 4.43e-23 | 92.8 |
| MS.gene77767.t1 | AT1G23130 | 30.201 | 149 | 102 | 2 | 3 | 150 | 10 | 157 | 3.94e-23 | 89.4 |
| MS.gene77767.t1 | AT1G70870 | 35.099 | 151 | 85 | 4 | 1 | 151 | 1 | 138 | 1.37e-22 | 87.4 |
| MS.gene77767.t1 | AT5G28000 | 28.000 | 150 | 105 | 3 | 3 | 150 | 13 | 161 | 1.54e-20 | 82.8 |
| MS.gene77767.t1 | AT1G23120 | 27.083 | 144 | 100 | 3 | 7 | 150 | 7 | 145 | 2.89e-20 | 81.6 |
| MS.gene77767.t1 | AT1G70880 | 28.000 | 150 | 105 | 3 | 3 | 150 | 8 | 156 | 3.56e-20 | 81.6 |
| MS.gene77767.t1 | AT1G23120 | 27.083 | 144 | 100 | 3 | 7 | 150 | 57 | 195 | 1.12e-19 | 81.6 |
| MS.gene77767.t1 | AT1G14930 | 30.968 | 155 | 100 | 4 | 1 | 152 | 1 | 151 | 2.76e-19 | 79.3 |
| MS.gene77767.t1 | AT4G23670 | 30.968 | 155 | 100 | 4 | 1 | 152 | 1 | 151 | 7.05e-17 | 73.2 |
| MS.gene77767.t1 | AT2G01520 | 30.323 | 155 | 101 | 4 | 1 | 152 | 1 | 151 | 7.68e-17 | 72.8 |
| MS.gene77767.t1 | AT1G24020 | 30.065 | 153 | 103 | 3 | 1 | 151 | 1 | 151 | 1.14e-15 | 70.1 |
| MS.gene77767.t1 | AT1G24020 | 30.065 | 153 | 103 | 3 | 1 | 151 | 1 | 151 | 1.14e-15 | 70.1 |
| MS.gene77767.t1 | AT4G14060 | 30.323 | 155 | 101 | 4 | 1 | 152 | 1 | 151 | 3.70e-15 | 68.6 |
| MS.gene77767.t1 | AT1G35260 | 22.517 | 151 | 113 | 3 | 2 | 150 | 1 | 149 | 4.52e-15 | 68.6 |
| MS.gene77767.t1 | AT1G14940 | 28.477 | 151 | 105 | 3 | 1 | 150 | 1 | 149 | 6.91e-15 | 67.8 |
| MS.gene77767.t1 | AT4G23680 | 29.032 | 155 | 103 | 4 | 1 | 152 | 1 | 151 | 1.48e-14 | 67.0 |
| MS.gene77767.t1 | AT2G01530 | 29.032 | 155 | 103 | 4 | 1 | 152 | 1 | 151 | 1.69e-14 | 67.0 |
| MS.gene77767.t1 | AT1G14950 | 28.758 | 153 | 104 | 4 | 1 | 151 | 1 | 150 | 1.80e-13 | 64.3 |
| MS.gene77767.t1 | AT1G30990 | 25.828 | 151 | 108 | 4 | 1 | 150 | 1 | 148 | 1.18e-11 | 59.3 |
| MS.gene77767.t1 | AT1G14960 | 26.316 | 152 | 109 | 3 | 1 | 151 | 1 | 150 | 8.49e-11 | 57.0 |
| MS.gene77767.t1 | AT3G26450 | 26.282 | 156 | 107 | 5 | 1 | 152 | 1 | 152 | 8.79e-11 | 57.0 |
Find 29 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTCTTCGGTGGAGATAT+TGG | 0.245046 | 8.1:+59882811 | MS.gene77767:CDS |
| AGCTCTTCGGTGGAGATATT+GGG | 0.329670 | 8.1:+59882812 | MS.gene77767:CDS |
| ATATTCAATTGTCCATTTGA+TGG | 0.352752 | 8.1:-59882896 | None:intergenic |
| GTCATCCCCTTGATGTAGCT+TGG | 0.401893 | 8.1:-59881300 | None:intergenic |
| AAACATTGGACTTATGTCAT+AGG | 0.403651 | 8.1:+59881344 | MS.gene77767:CDS |
| TAGAGATATTGATGCTCATC+TGG | 0.421031 | 8.1:+59882981 | MS.gene77767:CDS |
| ATTCAAATAATTGATAATAG+TGG | 0.432059 | 8.1:+59882862 | MS.gene77767:CDS |
| ACGTAGTCCATCCAGCCATT+AGG | 0.444330 | 8.1:-59882946 | None:intergenic |
| AGATATTGGGGAGAACTATA+AGG | 0.448937 | 8.1:+59882825 | MS.gene77767:CDS |
| AGCTACATCAAGGGGATGAC+TGG | 0.453220 | 8.1:+59881303 | MS.gene77767:CDS |
| GAGGATATTGACCCTCCTAA+TGG | 0.460289 | 8.1:+59882931 | MS.gene77767:CDS |
| GCAGCAGTGCTGCCATCAAA+TGG | 0.475803 | 8.1:+59882884 | MS.gene77767:CDS |
| GGTAAACTTAGTACTGAACT+TGG | 0.476618 | 8.1:+59881191 | MS.gene77767:CDS |
| CTTCCAAGGATGGTGCTCAA+TGG | 0.508173 | 8.1:+59881170 | None:intergenic |
| AAACTCACTTACAAGCTCTT+CGG | 0.512951 | 8.1:+59882799 | MS.gene77767:CDS |
| CATGAAACCAAGCTACATCA+AGG | 0.525025 | 8.1:+59881293 | MS.gene77767:CDS |
| ATATTGACCCTCCTAATGGC+TGG | 0.525673 | 8.1:+59882935 | MS.gene77767:CDS |
| TTTCATGAACTCTTTCACAA+TGG | 0.533960 | 8.1:-59881277 | None:intergenic |
| TAGTCCATCCAGCCATTAGG+AGG | 0.553714 | 8.1:-59882943 | None:intergenic |
| TGACCCTCCTAATGGCTGGA+TGG | 0.577019 | 8.1:+59882939 | MS.gene77767:CDS |
| TGACTGGCATCACACTGATA+CGG | 0.601188 | 8.1:+59881319 | MS.gene77767:CDS |
| GTAAACTTAGTACTGAACTT+GGG | 0.605653 | 8.1:+59881192 | MS.gene77767:CDS |
| ACACTGATACGGTTAAACAT+TGG | 0.605669 | 8.1:+59881330 | MS.gene77767:CDS |
| GCTCTTCGGTGGAGATATTG+GGG | 0.615379 | 8.1:+59882813 | MS.gene77767:CDS |
| CTCACTTACAAGCTCTTCGG+TGG | 0.619750 | 8.1:+59882802 | MS.gene77767:CDS |
| ATGAAACCAAGCTACATCAA+GGG | 0.623559 | 8.1:+59881294 | MS.gene77767:CDS |
| TGAAACCAAGCTACATCAAG+GGG | 0.635241 | 8.1:+59881295 | MS.gene77767:CDS |
| AGTCCATCCAGCCATTAGGA+GGG | 0.659406 | 8.1:-59882942 | None:intergenic |
| TGAATATGAGAAGATCAATG+AGG | 0.677949 | 8.1:+59882912 | MS.gene77767:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAGAACAATATTTGT+AGG | - | chr8.1:59882616-59882635 | None:intergenic | 15.0% |
| !! | ACGTAAATTGTTAAAATAAA+AGG | - | chr8.1:59881699-59881718 | None:intergenic | 15.0% |
| !!! | ATTCAAATAATTGATAATAG+TGG | + | chr8.1:59882862-59882881 | MS.gene77767:CDS | 15.0% |
| !!! | CTTTCTAATTTTATCATTTT+GGG | - | chr8.1:59881625-59881644 | None:intergenic | 15.0% |
| !!! | TAAAATTACTTTAAAACAAC+TGG | + | chr8.1:59882530-59882549 | MS.gene77767:intron | 15.0% |
| !! | ATTATTGAAAACGAAAGATA+AGG | - | chr8.1:59882664-59882683 | None:intergenic | 20.0% |
| !! | CATATGAAAATAAAATTGTG+TGG | - | chr8.1:59882696-59882715 | None:intergenic | 20.0% |
| !! | TATTCTAATTAAGGTCTTTA+AGG | + | chr8.1:59881571-59881590 | MS.gene77767:intron | 20.0% |
| !!! | CACACAATTTTATTTTCATA+TGG | + | chr8.1:59882694-59882713 | MS.gene77767:intron | 20.0% |
| !!! | GCTTTCTAATTTTATCATTT+TGG | - | chr8.1:59881626-59881645 | None:intergenic | 20.0% |
| !!! | TAATTTTATCATTTTGGGAT+AGG | - | chr8.1:59881620-59881639 | None:intergenic | 20.0% |
| ! | ATATTCAATTGTCCATTTGA+TGG | - | chr8.1:59882899-59882918 | None:intergenic | 25.0% |
| ! | CTTAAACTAGAAATCTGAAA+AGG | + | chr8.1:59882573-59882592 | MS.gene77767:intron | 25.0% |
| !! | TACATGTACTATTTTATCGT+TGG | - | chr8.1:59882178-59882197 | None:intergenic | 25.0% |
| AAAACAACTGGTACAAAACT+TGG | + | chr8.1:59882542-59882561 | MS.gene77767:intron | 30.0% | |
| AAACATTGGACTTATGTCAT+AGG | + | chr8.1:59881344-59881363 | MS.gene77767:CDS | 30.0% | |
| AAACTTAGAGATCCAACTAA+GGG | - | chr8.1:59882347-59882366 | None:intergenic | 30.0% | |
| ACAAGTTAACATTTCCCTTA+GGG | + | chr8.1:59881894-59881913 | MS.gene77767:intron | 30.0% | |
| GTGAATAAGATTTGCAGAAT+CGG | + | chr8.1:59882493-59882512 | MS.gene77767:intron | 30.0% | |
| TAAACTTAGAGATCCAACTA+AGG | - | chr8.1:59882348-59882367 | None:intergenic | 30.0% | |
| TCTTAAGTGTTACACTTTGT+GGG | - | chr8.1:59882113-59882132 | None:intergenic | 30.0% | |
| TGAATATGAGAAGATCAATG+AGG | + | chr8.1:59882912-59882931 | MS.gene77767:CDS | 30.0% | |
| TTTCATGAACTCTTTCACAA+TGG | - | chr8.1:59881280-59881299 | None:intergenic | 30.0% | |
| ! | GATGAATTGATGATACTATG+AGG | - | chr8.1:59882033-59882052 | None:intergenic | 30.0% |
| ! | GTAAACTTAGTACTGAACTT+GGG | + | chr8.1:59881192-59881211 | MS.gene77767:CDS | 30.0% |
| ! | TTGATAGTAAGTAAACGTAG+AGG | - | chr8.1:59881670-59881689 | None:intergenic | 30.0% |
| !! | AGTGTTAACTTGTGTCTTTA+GGG | + | chr8.1:59881732-59881751 | MS.gene77767:intron | 30.0% |
| !!! | AGTCATGAGAATGACTTTTT+TGG | + | chr8.1:59881932-59881951 | MS.gene77767:intron | 30.0% |
| !!! | GATTCTAGTGTGTTTTTTGA+AGG | + | chr8.1:59882464-59882483 | MS.gene77767:intron | 30.0% |
| AAACTCACTTACAAGCTCTT+CGG | + | chr8.1:59882799-59882818 | MS.gene77767:CDS | 35.0% | |
| AATCATTACCTTGTGTCTTG+AGG | + | chr8.1:59881869-59881888 | MS.gene77767:intron | 35.0% | |
| ACACTGATACGGTTAAACAT+TGG | + | chr8.1:59881330-59881349 | MS.gene77767:CDS | 35.0% | |
| AGATATTGGGGAGAACTATA+AGG | + | chr8.1:59882825-59882844 | MS.gene77767:CDS | 35.0% | |
| AGTAATGCTTTGCAACATCT+TGG | - | chr8.1:59882204-59882223 | None:intergenic | 35.0% | |
| ATCATTACCTTGTGTCTTGA+GGG | + | chr8.1:59881870-59881889 | MS.gene77767:intron | 35.0% | |
| ATGAAACCAAGCTACATCAA+GGG | + | chr8.1:59881294-59881313 | MS.gene77767:CDS | 35.0% | |
| ATGCCATTGTACAAATAGTG+GGG | - | chr8.1:59881998-59882017 | None:intergenic | 35.0% | |
| CTTAAGTGTTACACTTTGTG+GGG | - | chr8.1:59882112-59882131 | None:intergenic | 35.0% | |
| GACAAGTTAACATTTCCCTT+AGG | + | chr8.1:59881893-59881912 | MS.gene77767:intron | 35.0% | |
| GATGCCATTGTACAAATAGT+GGG | - | chr8.1:59881999-59882018 | None:intergenic | 35.0% | |
| GTACAATGGCATCAAAAGTT+TGG | + | chr8.1:59882006-59882025 | MS.gene77767:intron | 35.0% | |
| GTCTTAAGTGTTACACTTTG+TGG | - | chr8.1:59882114-59882133 | None:intergenic | 35.0% | |
| TAGAGATATTGATGCTCATC+TGG | + | chr8.1:59882981-59883000 | MS.gene77767:CDS | 35.0% | |
| TGATGCCATTGTACAAATAG+TGG | - | chr8.1:59882000-59882019 | None:intergenic | 35.0% | |
| TGTTACGCTTATAACAAGGT+TGG | - | chr8.1:59882089-59882108 | None:intergenic | 35.0% | |
| TTCCCTTAGGGAAAATTCTA+TGG | + | chr8.1:59881906-59881925 | MS.gene77767:intron | 35.0% | |
| ! | CACCATAGAATTTTCCCTAA+GGG | - | chr8.1:59881911-59881930 | None:intergenic | 35.0% |
| ! | GCTTTTACATGTTCTCTTGT+TGG | + | chr8.1:59881644-59881663 | MS.gene77767:intron | 35.0% |
| ! | GGTAAACTTAGTACTGAACT+TGG | + | chr8.1:59881191-59881210 | MS.gene77767:CDS | 35.0% |
| ! | TCACCATAGAATTTTCCCTA+AGG | - | chr8.1:59881912-59881931 | None:intergenic | 35.0% |
| !! | CAGTGTTAACTTGTGTCTTT+AGG | + | chr8.1:59881731-59881750 | MS.gene77767:intron | 35.0% |
| !!! | GTGTGTTTTTTGAAGGACTA+AGG | + | chr8.1:59882471-59882490 | MS.gene77767:intron | 35.0% |
| ACACCCCACTATTTGTACAA+TGG | + | chr8.1:59881992-59882011 | MS.gene77767:intron | 40.0% | |
| CATGAAACCAAGCTACATCA+AGG | + | chr8.1:59881293-59881312 | MS.gene77767:CDS | 40.0% | |
| TAGAGATCCAACTAAGGGAA+GGG | - | chr8.1:59882342-59882361 | None:intergenic | 40.0% | |
| TCATTACCTTGTGTCTTGAG+GGG | + | chr8.1:59881871-59881890 | MS.gene77767:intron | 40.0% | |
| TGAAACCAAGCTACATCAAG+GGG | + | chr8.1:59881295-59881314 | MS.gene77767:CDS | 40.0% | |
| TTAGAGATCCAACTAAGGGA+AGG | - | chr8.1:59882343-59882362 | None:intergenic | 40.0% | |
| !! | GTCTTTAAGGAGTACTCAAG+AGG | + | chr8.1:59881584-59881603 | MS.gene77767:intron | 40.0% |
| AAGCTCTTCGGTGGAGATAT+TGG | + | chr8.1:59882811-59882830 | MS.gene77767:CDS | 45.0% | |
| AGCTCTTCGGTGGAGATATT+GGG | + | chr8.1:59882812-59882831 | MS.gene77767:CDS | 45.0% | |
| ATATTGACCCTCCTAATGGC+TGG | + | chr8.1:59882935-59882954 | MS.gene77767:CDS | 45.0% | |
| GAGGATATTGACCCTCCTAA+TGG | + | chr8.1:59882931-59882950 | MS.gene77767:CDS | 45.0% | |
| TGACTGGCATCACACTGATA+CGG | + | chr8.1:59881319-59881338 | MS.gene77767:CDS | 45.0% | |
| TGCCATCTGTTGTCATGTGA+CGG | - | chr8.1:59882729-59882748 | None:intergenic | 45.0% | |
| ! | CTACTAGTTTCTCCTCCTGA+AGG | + | chr8.1:59882369-59882388 | MS.gene77767:intron | 45.0% |
| ! | GGGGTGTTACGCTTATAACA+AGG | - | chr8.1:59882093-59882112 | None:intergenic | 45.0% |
| !! | TATAAAAAATATTCTAATTA+AGG | + | chr8.1:59881562-59881581 | MS.gene77767:intron | 5.0% |
| !!! | AATTGAATTTAAAAAATTTT+AGG | - | chr8.1:59881448-59881467 | None:intergenic | 5.0% |
| ACGTAGTCCATCCAGCCATT+AGG | - | chr8.1:59882949-59882968 | None:intergenic | 50.0% | |
| ACTTGTCCCCTCAAGACACA+AGG | - | chr8.1:59881880-59881899 | None:intergenic | 50.0% | |
| AGAAGCTCCCTTCCCTTAGT+TGG | + | chr8.1:59882332-59882351 | MS.gene77767:intron | 50.0% | |
| AGCTACATCAAGGGGATGAC+TGG | + | chr8.1:59881303-59881322 | MS.gene77767:CDS | 50.0% | |
| AGTCCATCCAGCCATTAGGA+GGG | - | chr8.1:59882945-59882964 | None:intergenic | 50.0% | |
| CTCACTTACAAGCTCTTCGG+TGG | + | chr8.1:59882802-59882821 | MS.gene77767:CDS | 50.0% | |
| GAATCGAACCTGAGACCTTC+AGG | - | chr8.1:59882387-59882406 | None:intergenic | 50.0% | |
| GCCATCTGTTGTCATGTGAC+GGG | - | chr8.1:59882728-59882747 | None:intergenic | 50.0% | |
| GCTCTTCGGTGGAGATATTG+GGG | + | chr8.1:59882813-59882832 | MS.gene77767:CDS | 50.0% | |
| GTCATCCCCTTGATGTAGCT+TGG | - | chr8.1:59881303-59881322 | None:intergenic | 50.0% | |
| TAGTCCATCCAGCCATTAGG+AGG | - | chr8.1:59882946-59882965 | None:intergenic | 50.0% | |
| TCCCGTCACATGACAACAGA+TGG | + | chr8.1:59882724-59882743 | MS.gene77767:intron | 50.0% | |
| TTTCTCCTCCTGAAGGTCTC+AGG | + | chr8.1:59882376-59882395 | MS.gene77767:intron | 50.0% | |
| GCAGCAGTGCTGCCATCAAA+TGG | + | chr8.1:59882884-59882903 | MS.gene77767:CDS | 55.0% | |
| GGAGCTTCTACAGTGCAGTC+AGG | - | chr8.1:59882321-59882340 | None:intergenic | 55.0% | |
| TCGAACCTGAGACCTTCAGG+AGG | - | chr8.1:59882384-59882403 | None:intergenic | 55.0% | |
| TGACCCTCCTAATGGCTGGA+TGG | + | chr8.1:59882939-59882958 | MS.gene77767:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 59881179 | 59883014 | 59881179 | ID=MS.gene77767 |
| chr8.1 | mRNA | 59881179 | 59883014 | 59881179 | ID=MS.gene77767.t1;Parent=MS.gene77767 |
| chr8.1 | exon | 59881179 | 59881365 | 59881179 | ID=MS.gene77767.t1.exon1;Parent=MS.gene77767.t1 |
| chr8.1 | CDS | 59881179 | 59881365 | 59881179 | ID=cds.MS.gene77767.t1;Parent=MS.gene77767.t1 |
| chr8.1 | exon | 59882743 | 59883014 | 59882743 | ID=MS.gene77767.t1.exon2;Parent=MS.gene77767.t1 |
| chr8.1 | CDS | 59882743 | 59883014 | 59882743 | ID=cds.MS.gene77767.t1;Parent=MS.gene77767.t1 |
| Gene Sequence |
| Protein sequence |
