Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78163.t1 | XP_003595673.1 | 86.5 | 185 | 22 | 1 | 1 | 182 | 1 | 185 | 8.90E-84 | 319.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78163.t1 | Q9C9C0 | 55.0 | 191 | 70 | 5 | 4 | 182 | 5 | 191 | 2.9e-43 | 176.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78163.t1 | G7ISZ4 | 86.5 | 185 | 22 | 1 | 1 | 182 | 1 | 185 | 6.4e-84 | 319.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050577 | MS.gene78163 | 0.814061 | 1.87E-51 | -1.69E-46 |
| MS.gene050675 | MS.gene78163 | 0.806438 | 8.22E-50 | -1.69E-46 |
| MS.gene050950 | MS.gene78163 | 0.800906 | 1.16E-48 | -1.69E-46 |
| MS.gene050986 | MS.gene78163 | 0.802576 | 5.25E-49 | -1.69E-46 |
| MS.gene052164 | MS.gene78163 | 0.802015 | 6.86E-49 | -1.69E-46 |
| MS.gene052486 | MS.gene78163 | 0.801802 | 7.58E-49 | -1.69E-46 |
| MS.gene056040 | MS.gene78163 | 0.822264 | 2.60E-53 | -1.69E-46 |
| MS.gene056166 | MS.gene78163 | 0.806191 | 9.27E-50 | -1.69E-46 |
| MS.gene05666 | MS.gene78163 | 0.804909 | 1.72E-49 | -1.69E-46 |
| MS.gene056877 | MS.gene78163 | 0.805448 | 1.33E-49 | -1.69E-46 |
| MS.gene057831 | MS.gene78163 | 0.838577 | 2.65E-57 | -1.69E-46 |
| MS.gene058019 | MS.gene78163 | 0.807374 | 5.21E-50 | -1.69E-46 |
| MS.gene05883 | MS.gene78163 | 0.809616 | 1.73E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene78163 | 0.800264 | 1.56E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78163.t1 | MTR_2g058970 | 88.649 | 185 | 18 | 1 | 1 | 182 | 1 | 185 | 2.12e-101 | 306 |
| MS.gene78163.t1 | MTR_4g112860 | 71.698 | 106 | 29 | 1 | 78 | 182 | 68 | 173 | 9.51e-52 | 171 |
| MS.gene78163.t1 | MTR_4g112860 | 71.698 | 106 | 29 | 1 | 78 | 182 | 68 | 173 | 4.46e-51 | 171 |
| MS.gene78163.t1 | MTR_4g112860 | 71.698 | 106 | 29 | 1 | 78 | 182 | 68 | 173 | 1.24e-50 | 171 |
| MS.gene78163.t1 | MTR_4g112860 | 71.698 | 106 | 29 | 1 | 78 | 182 | 68 | 173 | 1.39e-50 | 172 |
| MS.gene78163.t1 | MTR_5g083090 | 51.899 | 79 | 32 | 3 | 105 | 180 | 1 | 76 | 1.72e-18 | 78.6 |
| MS.gene78163.t1 | MTR_4g134260 | 64.407 | 59 | 20 | 1 | 125 | 182 | 27 | 85 | 1.21e-17 | 79.7 |
| MS.gene78163.t1 | MTR_4g112820 | 40.000 | 110 | 38 | 1 | 73 | 182 | 41 | 122 | 5.94e-16 | 75.1 |
| MS.gene78163.t1 | MTR_4g130360 | 40.566 | 106 | 27 | 2 | 77 | 182 | 75 | 144 | 6.25e-16 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78163.t1 | AT1G73990 | 63.399 | 153 | 43 | 4 | 39 | 182 | 43 | 191 | 1.35e-55 | 185 |
| MS.gene78163.t1 | AT1G73990 | 58.757 | 177 | 49 | 6 | 15 | 182 | 30 | 191 | 1.92e-55 | 186 |
Find 50 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTATGATCCTCGAATTTC+TGG | 0.156422 | 2.3:-35640885 | MS.gene78163:CDS |
| GTCTTCTTCTTGAATGAGTT+TGG | 0.227850 | 2.3:+35642303 | None:intergenic |
| TCTTCTTCTTGAATGAGTTT+GGG | 0.270184 | 2.3:+35642304 | None:intergenic |
| TTTGAATTTGAACCTATTAC+TGG | 0.285214 | 2.3:-35642170 | MS.gene78163:CDS |
| CACAGTTTAAATTATCAATA+TGG | 0.314814 | 2.3:+35640853 | None:intergenic |
| TGGCTTGCCTCAAGAATATA+TGG | 0.328374 | 2.3:+35640797 | None:intergenic |
| GTAGAGGGAGGTGTGGAGGG+GGG | 0.333560 | 2.3:+35642403 | None:intergenic |
| AAATTCCTCCAACCAGTAAT+AGG | 0.377007 | 2.3:+35642158 | None:intergenic |
| GGCGGTAGAGGGAGGTGTGG+AGG | 0.383098 | 2.3:+35642399 | None:intergenic |
| TAGAGGGAGGTGTGGAGGGG+GGG | 0.389232 | 2.3:+35642404 | None:intergenic |
| GGTAGAGGGAGGTGTGGAGG+GGG | 0.392523 | 2.3:+35642402 | None:intergenic |
| TACAATGAAGCTTCGTGGCC+AGG | 0.399382 | 2.3:-35642072 | MS.gene78163:intron |
| TTCAAATTCAAATTCTCCAC+TGG | 0.413968 | 2.3:+35642181 | None:intergenic |
| TTGGAGGAATTTCGTCGTTA+AGG | 0.417101 | 2.3:-35642147 | MS.gene78163:CDS |
| CCTATGATCCTCGAATTTCT+GGG | 0.434964 | 2.3:-35640884 | MS.gene78163:CDS |
| CGGTAGAGGGAGGTGTGGAG+GGG | 0.441743 | 2.3:+35642401 | None:intergenic |
| GCGGTAGAGGGAGGTGTGGA+GGG | 0.446200 | 2.3:+35642400 | None:intergenic |
| CCCAGAAATTCGAGGATCAT+AGG | 0.470601 | 2.3:+35640884 | None:intergenic |
| AGATGCTCATTGCGTATCCA+TGG | 0.485437 | 2.3:-35642121 | MS.gene78163:CDS |
| TTGAACCTATTACTGGTTGG+AGG | 0.497114 | 2.3:-35642163 | MS.gene78163:CDS |
| ATAAGGTGTTGCGGCGGTAG+AGG | 0.501582 | 2.3:+35642387 | None:intergenic |
| AGTTTGGGGAAGAGAGTGAA+AGG | 0.501583 | 2.3:+35642319 | None:intergenic |
| GATAATTTAAACTGTGGGTG+GGG | 0.510915 | 2.3:-35640846 | MS.gene78163:CDS |
| GTTCTTACAATGAAGCTTCG+TGG | 0.512091 | 2.3:-35642077 | MS.gene78163:CDS |
| TGATAATTTAAACTGTGGGT+GGG | 0.512890 | 2.3:-35640847 | MS.gene78163:CDS |
| TTGATAATTTAAACTGTGGG+TGG | 0.515648 | 2.3:-35640848 | MS.gene78163:CDS |
| AGTGAAGAGTAGATTCTCTC+CGG | 0.517158 | 2.3:-35640949 | MS.gene78163:CDS |
| GGAAGAATCAAAAGCGCGAA+GGG | 0.529032 | 2.3:+35642274 | None:intergenic |
| AATTTGAACCTATTACTGGT+TGG | 0.537190 | 2.3:-35642166 | MS.gene78163:CDS |
| CATATTGATAATTTAAACTG+TGG | 0.542891 | 2.3:-35640852 | MS.gene78163:CDS |
| CTTCTTCTTGAATGAGTTTG+GGG | 0.549616 | 2.3:+35642305 | None:intergenic |
| AAGTGACGATGATGATGATA+AGG | 0.550787 | 2.3:+35642370 | None:intergenic |
| ATATTGATAATTTAAACTGT+GGG | 0.552578 | 2.3:-35640851 | MS.gene78163:CDS |
| CCTTTACGAACACGTTCCCA+TGG | 0.553283 | 2.3:+35642104 | None:intergenic |
| CCATGGGAACGTGTTCGTAA+AGG | 0.554425 | 2.3:-35642104 | MS.gene78163:CDS |
| TCAAATTCAAATTCTCCACT+GGG | 0.565424 | 2.3:+35642182 | None:intergenic |
| TAAGGTGTTGCGGCGGTAGA+GGG | 0.571866 | 2.3:+35642388 | None:intergenic |
| GATGCTCATTGCGTATCCAT+GGG | 0.597452 | 2.3:-35642120 | MS.gene78163:CDS |
| AGATAGACCCCAGAAATTCG+AGG | 0.602106 | 2.3:+35640876 | None:intergenic |
| GTGAAGAGTAGATTCTCTCC+GGG | 0.602919 | 2.3:-35640948 | MS.gene78163:CDS |
| TGCGGCGGTAGAGGGAGGTG+TGG | 0.607201 | 2.3:+35642396 | None:intergenic |
| GGTGTTGCGGCGGTAGAGGG+AGG | 0.613375 | 2.3:+35642391 | None:intergenic |
| GTAAAGTAGAAGAAATTCGA+AGG | 0.619983 | 2.3:-35640824 | MS.gene78163:CDS |
| AGGAAGAATCAAAAGCGCGA+AGG | 0.632352 | 2.3:+35642273 | None:intergenic |
| CTATGATCCTCGAATTTCTG+GGG | 0.650704 | 2.3:-35640883 | MS.gene78163:CDS |
| ATTTGAGGTAGAGAAAGTCC+CGG | 0.652101 | 2.3:+35640930 | None:intergenic |
| AGGCAAGCCATATATTCTTG+AGG | 0.654985 | 2.3:-35640804 | None:intergenic |
| ATGATGATGATAAGGTGTTG+CGG | 0.714238 | 2.3:+35642378 | None:intergenic |
| GCTGATGAAGATTATCCCAG+TGG | 0.718921 | 2.3:-35642197 | MS.gene78163:CDS |
| ATGATGATAAGGTGTTGCGG+CGG | 0.786339 | 2.3:+35642381 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTATTTTATTTTGTTTAA+TGG | + | chr2.3:35641630-35641649 | None:intergenic | 10.0% |
| !! | AACATACTATATGTATATTT+GGG | + | chr2.3:35642202-35642221 | None:intergenic | 15.0% |
| !! | AATGTAATGTAAAAAAGTTT+GGG | - | chr2.3:35641285-35641304 | MS.gene78163:intron | 15.0% |
| !! | TAATGTAATGTAAAAAAGTT+TGG | - | chr2.3:35641284-35641303 | MS.gene78163:intron | 15.0% |
| !!! | ATATTGATAATTTAAACTGT+GGG | - | chr2.3:35642383-35642402 | MS.gene78163:CDS | 15.0% |
| !! | CACAGTTTAAATTATCAATA+TGG | + | chr2.3:35642384-35642403 | None:intergenic | 20.0% |
| !! | GAACATACTATATGTATATT+TGG | + | chr2.3:35642203-35642222 | None:intergenic | 20.0% |
| !! | TTATGAAAATAAGCTGAATA+TGG | - | chr2.3:35641707-35641726 | MS.gene78163:intron | 20.0% |
| !!! | AAGAAATAGTTTGAGTTTAA+CGG | + | chr2.3:35641451-35641470 | None:intergenic | 20.0% |
| !!! | CATATTGATAATTTAAACTG+TGG | - | chr2.3:35642382-35642401 | MS.gene78163:CDS | 20.0% |
| !!! | GAATGTGATTAAATTGTTTT+AGG | - | chr2.3:35641905-35641924 | MS.gene78163:intron | 20.0% |
| ! | AAAAAATTCTCGCATATTTG+AGG | + | chr2.3:35642322-35642341 | None:intergenic | 25.0% |
| ! | ACATGGTAGTAAGATATAAT+TGG | - | chr2.3:35641830-35641849 | MS.gene78163:intron | 25.0% |
| ! | AGTATGATTATAATTGAGCA+TGG | + | chr2.3:35642135-35642154 | None:intergenic | 25.0% |
| ! | CAAAATAAGCCAATTCAAAT+AGG | - | chr2.3:35641806-35641825 | MS.gene78163:intron | 25.0% |
| ! | CTAGTTTAATTAAGTGACAT+AGG | - | chr2.3:35641526-35641545 | MS.gene78163:intron | 25.0% |
| ! | CTCAAATATTTACTCAACAA+AGG | + | chr2.3:35641224-35641243 | None:intergenic | 25.0% |
| ! | GTAAAAAAGTTTGGGAAAAT+AGG | - | chr2.3:35641293-35641312 | MS.gene78163:intron | 25.0% |
| ! | GTATGATTATAATTGAGCAT+GGG | + | chr2.3:35642134-35642153 | None:intergenic | 25.0% |
| ! | TGTTCATATGATAAGCAATT+AGG | + | chr2.3:35641870-35641889 | None:intergenic | 25.0% |
| ! | TTTGAATTTGAACCTATTAC+TGG | - | chr2.3:35641064-35641083 | MS.gene78163:intron | 25.0% |
| !! | ATTTTACACTAACATCCAAT+AGG | + | chr2.3:35641405-35641424 | None:intergenic | 25.0% |
| !! | TTATGTTGTTTATCCAAATC+AGG | + | chr2.3:35641552-35641571 | None:intergenic | 25.0% |
| !!! | AATCACTTTTTCTTCGATTT+TGG | + | chr2.3:35640993-35641012 | None:intergenic | 25.0% |
| !!! | ATGAACACTATTTCTAGAAA+GGG | - | chr2.3:35641883-35641902 | MS.gene78163:intron | 25.0% |
| !!! | TATGAACACTATTTCTAGAA+AGG | - | chr2.3:35641882-35641901 | MS.gene78163:intron | 25.0% |
| !!! | TCTGCTTTCATTTTTCAAAT+TGG | - | chr2.3:35642221-35642240 | MS.gene78163:CDS | 25.0% |
| !!! | TGTTTATGTTTGAGTTGAAT+TGG | - | chr2.3:35641252-35641271 | MS.gene78163:intron | 25.0% |
| AAGGATAAGAAATGTGATGA+TGG | + | chr2.3:35641205-35641224 | None:intergenic | 30.0% | |
| AAGTACTTATGTGAGTAGAA+AGG | - | chr2.3:35641781-35641800 | MS.gene78163:intron | 30.0% | |
| AATTTGAACCTATTACTGGT+TGG | - | chr2.3:35641068-35641087 | MS.gene78163:intron | 30.0% | |
| CAAATCATGACGCAATATTA+AGG | - | chr2.3:35642011-35642030 | MS.gene78163:intron | 30.0% | |
| GAAGAAAAAGTGATTCAAGA+AGG | - | chr2.3:35640998-35641017 | MS.gene78163:intron | 30.0% | |
| GTAAAGTAGAAGAAATTCGA+AGG | - | chr2.3:35642410-35642429 | MS.gene78163:CDS | 30.0% | |
| TCAAATTCAAATTCTCCACT+GGG | + | chr2.3:35641055-35641074 | None:intergenic | 30.0% | |
| TCTTCTTCTTGAATGAGTTT+GGG | + | chr2.3:35640933-35640952 | None:intergenic | 30.0% | |
| TGATAATTTAAACTGTGGGT+GGG | - | chr2.3:35642387-35642406 | MS.gene78163:CDS | 30.0% | |
| TTCAAATTCAAATTCTCCAC+TGG | + | chr2.3:35641056-35641075 | None:intergenic | 30.0% | |
| TTTGCTTTCATGAGCTATAT+TGG | - | chr2.3:35641679-35641698 | MS.gene78163:intron | 30.0% | |
| ! | CACTATGTTTAAAATCGTAG+AGG | - | chr2.3:35641492-35641511 | MS.gene78163:intron | 30.0% |
| ! | GAGAAATAGTTGATTCCTAT+TGG | - | chr2.3:35641387-35641406 | MS.gene78163:intron | 30.0% |
| ! | TGTTTAAAATCGTAGAGGTA+TGG | - | chr2.3:35641497-35641516 | MS.gene78163:intron | 30.0% |
| ! | TTGATAATTTAAACTGTGGG+TGG | - | chr2.3:35642386-35642405 | MS.gene78163:CDS | 30.0% |
| !! | AAGAAATGTGATGATGGTAA+AGG | + | chr2.3:35641199-35641218 | None:intergenic | 30.0% |
| !! | TTTTTCTTCGATTTTGGTGT+CGG | + | chr2.3:35640987-35641006 | None:intergenic | 30.0% |
| AAATTCCTCCAACCAGTAAT+AGG | + | chr2.3:35641079-35641098 | None:intergenic | 35.0% | |
| CTTCTTCTTGAATGAGTTTG+GGG | + | chr2.3:35640932-35640951 | None:intergenic | 35.0% | |
| GATAATTTAAACTGTGGGTG+GGG | - | chr2.3:35642388-35642407 | MS.gene78163:CDS | 35.0% | |
| GTCTTCTTCTTGAATGAGTT+TGG | + | chr2.3:35640934-35640953 | None:intergenic | 35.0% | |
| TACCATGTGCCTATTTGAAT+TGG | + | chr2.3:35641818-35641837 | None:intergenic | 35.0% | |
| ! | AAGTGACGATGATGATGATA+AGG | + | chr2.3:35640867-35640886 | None:intergenic | 35.0% |
| ! | ACTATTTCTCCACCTCTATT+AGG | + | chr2.3:35641377-35641396 | None:intergenic | 35.0% |
| ! | TAAAATCGTAGAGGTATGGT+AGG | - | chr2.3:35641501-35641520 | MS.gene78163:intron | 35.0% |
| !! | ATGATGATGATAAGGTGTTG+CGG | + | chr2.3:35640859-35640878 | None:intergenic | 35.0% |
| !! | TGATGATGGTAAAGGAAAGA+AGG | + | chr2.3:35641191-35641210 | None:intergenic | 35.0% |
| AGCCAATTCAAATAGGCACA+TGG | - | chr2.3:35641813-35641832 | MS.gene78163:intron | 40.0% | |
| AGTGAAGAGTAGATTCTCTC+CGG | - | chr2.3:35642285-35642304 | MS.gene78163:CDS | 40.0% | |
| CCTATGATCCTCGAATTTCT+GGG | - | chr2.3:35642350-35642369 | MS.gene78163:CDS | 40.0% | |
| CTATGATCCTCGAATTTCTG+GGG | - | chr2.3:35642351-35642370 | MS.gene78163:CDS | 40.0% | |
| GTAAAGGAAAGAAGGAAACC+TGG | + | chr2.3:35641183-35641202 | None:intergenic | 40.0% | |
| GTTCTTACAATGAAGCTTCG+TGG | - | chr2.3:35641157-35641176 | MS.gene78163:intron | 40.0% | |
| TAAGTGACATAGGCCTGATT+TGG | - | chr2.3:35641536-35641555 | MS.gene78163:intron | 40.0% | |
| TCCACCTCTATTAGGTGATT+TGG | + | chr2.3:35641369-35641388 | None:intergenic | 40.0% | |
| TCTGCCAAATCACCTAATAG+AGG | - | chr2.3:35641362-35641381 | MS.gene78163:intron | 40.0% | |
| TTGGAGGAATTTCGTCGTTA+AGG | - | chr2.3:35641087-35641106 | MS.gene78163:intron | 40.0% | |
| ! | AGGTGATTTGGCAGAATACA+CGG | + | chr2.3:35641357-35641376 | None:intergenic | 40.0% |
| ! | ATTTGAGGTAGAGAAAGTCC+CGG | + | chr2.3:35642307-35642326 | None:intergenic | 40.0% |
| ! | TTGAACCTATTACTGGTTGG+AGG | - | chr2.3:35641071-35641090 | MS.gene78163:intron | 40.0% |
| AAGGTTGTTGCCTTGTGAGT+TGG | - | chr2.3:35642030-35642049 | MS.gene78163:intron | 45.0% | |
| AGATAGACCCCAGAAATTCG+AGG | + | chr2.3:35642361-35642380 | None:intergenic | 45.0% | |
| AGATGCTCATTGCGTATCCA+TGG | - | chr2.3:35641113-35641132 | MS.gene78163:intron | 45.0% | |
| AGTTTGGGGAAGAGAGTGAA+AGG | + | chr2.3:35640918-35640937 | None:intergenic | 45.0% | |
| CCCAGAAATTCGAGGATCAT+AGG | + | chr2.3:35642353-35642372 | None:intergenic | 45.0% | |
| GATGCTCATTGCGTATCCAT+GGG | - | chr2.3:35641114-35641133 | MS.gene78163:intron | 45.0% | |
| GCCAAATCACCTAATAGAGG+TGG | - | chr2.3:35641365-35641384 | MS.gene78163:intron | 45.0% | |
| GCCTATGATCCTCGAATTTC+TGG | - | chr2.3:35642349-35642368 | MS.gene78163:CDS | 45.0% | |
| GCTGATGAAGATTATCCCAG+TGG | - | chr2.3:35641037-35641056 | MS.gene78163:intron | 45.0% | |
| GTGAAGAGTAGATTCTCTCC+GGG | - | chr2.3:35642286-35642305 | MS.gene78163:CDS | 45.0% | |
| TAGAAACAGCTTTCCGCTTG+CGG | - | chr2.3:35642072-35642091 | MS.gene78163:intron | 45.0% | |
| ! | AGGAAGAATCAAAAGCGCGA+AGG | + | chr2.3:35640964-35640983 | None:intergenic | 45.0% |
| ! | GGAAGAATCAAAAGCGCGAA+GGG | + | chr2.3:35640963-35640982 | None:intergenic | 45.0% |
| !! | ATGATGATAAGGTGTTGCGG+CGG | + | chr2.3:35640856-35640875 | None:intergenic | 45.0% |
| !!! | TTCTTCGATTTTGGTGTCGG+AGG | + | chr2.3:35640984-35641003 | None:intergenic | 45.0% |
| AGAAACAGCTTTCCGCTTGC+GGG | - | chr2.3:35642073-35642092 | MS.gene78163:CDS | 50.0% | |
| CATGGGTGATTAAGCACACG+AGG | + | chr2.3:35642117-35642136 | None:intergenic | 50.0% | |
| CCATGGGAACGTGTTCGTAA+AGG | - | chr2.3:35641130-35641149 | MS.gene78163:intron | 50.0% | |
| CCTTTACGAACACGTTCCCA+TGG | + | chr2.3:35641133-35641152 | None:intergenic | 50.0% | |
| CTCATGACCTCCAACTCACA+AGG | + | chr2.3:35642043-35642062 | None:intergenic | 50.0% | |
| TACAATGAAGCTTCGTGGCC+AGG | - | chr2.3:35641162-35641181 | MS.gene78163:intron | 50.0% | |
| ! | GTTGTTGCCTTGTGAGTTGG+AGG | - | chr2.3:35642033-35642052 | MS.gene78163:intron | 50.0% |
| !! | GCAAGCGGAAAGCTGTTTCT+AGG | + | chr2.3:35642073-35642092 | None:intergenic | 50.0% |
| !! | ATAAGGTGTTGCGGCGGTAG+AGG | + | chr2.3:35640850-35640869 | None:intergenic | 55.0% |
| !! | TAAGGTGTTGCGGCGGTAGA+GGG | + | chr2.3:35640849-35640868 | None:intergenic | 55.0% |
| AAGCACACGAGGCTTCCACC+AGG | + | chr2.3:35642106-35642125 | None:intergenic | 60.0% | |
| ACACGAGGCTTCCACCAGGT+GGG | + | chr2.3:35642102-35642121 | None:intergenic | 60.0% | |
| ACGAGGCTTCCACCAGGTGG+GGG | + | chr2.3:35642100-35642119 | None:intergenic | 65.0% | |
| CACACGAGGCTTCCACCAGG+TGG | + | chr2.3:35642103-35642122 | None:intergenic | 65.0% | |
| CACGAGGCTTCCACCAGGTG+GGG | + | chr2.3:35642101-35642120 | None:intergenic | 65.0% | |
| ! | CGGTAGAGGGAGGTGTGGAG+GGG | + | chr2.3:35640836-35640855 | None:intergenic | 65.0% |
| ! | GCGGTAGAGGGAGGTGTGGA+GGG | + | chr2.3:35640837-35640856 | None:intergenic | 65.0% |
| ! | GGTAGAGGGAGGTGTGGAGG+GGG | + | chr2.3:35640835-35640854 | None:intergenic | 65.0% |
| ! | GTAGAGGGAGGTGTGGAGGG+GGG | + | chr2.3:35640834-35640853 | None:intergenic | 65.0% |
| ! | TAGAGGGAGGTGTGGAGGGG+GGG | + | chr2.3:35640833-35640852 | None:intergenic | 65.0% |
| TGCGGCGGTAGAGGGAGGTG+TGG | + | chr2.3:35640841-35640860 | None:intergenic | 70.0% | |
| ! | GAGGTGTGGAGGGGGGGTGT+GGG | + | chr2.3:35640827-35640846 | None:intergenic | 70.0% |
| ! | GGCGGTAGAGGGAGGTGTGG+AGG | + | chr2.3:35640838-35640857 | None:intergenic | 70.0% |
| ! | GGTGTTGCGGCGGTAGAGGG+AGG | + | chr2.3:35640846-35640865 | None:intergenic | 70.0% |
| CCAGGTGGGGGACCCGCAAG+CGG | + | chr2.3:35642088-35642107 | None:intergenic | 75.0% | |
| CTTGCGGGTCCCCCACCTGG+TGG | - | chr2.3:35642088-35642107 | MS.gene78163:CDS | 75.0% | |
| ! | GGAGGTGTGGAGGGGGGGTG+TGG | + | chr2.3:35640828-35640847 | None:intergenic | 75.0% |
| ! | CCGCTTGCGGGTCCCCCACC+TGG | - | chr2.3:35642085-35642104 | MS.gene78163:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 35640806 | 35642450 | 35640806 | ID=MS.gene78163 |
| chr2.3 | mRNA | 35640806 | 35642450 | 35640806 | ID=MS.gene78163.t1;Parent=MS.gene78163 |
| chr2.3 | exon | 35642073 | 35642450 | 35642073 | ID=MS.gene78163.t1.exon1;Parent=MS.gene78163.t1 |
| chr2.3 | CDS | 35642073 | 35642450 | 35642073 | ID=cds.MS.gene78163.t1;Parent=MS.gene78163.t1 |
| chr2.3 | exon | 35640806 | 35640982 | 35640806 | ID=MS.gene78163.t1.exon2;Parent=MS.gene78163.t1 |
| chr2.3 | CDS | 35640806 | 35640982 | 35640806 | ID=cds.MS.gene78163.t1;Parent=MS.gene78163.t1 |
| Gene Sequence |
| Protein sequence |
